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author | V3n3RiX <venerix@koprulu.sector> | 2023-03-30 16:00:34 +0100 |
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committer | V3n3RiX <venerix@koprulu.sector> | 2023-03-30 16:00:34 +0100 |
commit | 8b63b46fda85d54cfbe94df2444a3ddd3e63b8e4 (patch) | |
tree | ced0310e563ec21deb23ca12d5459aebadba36f6 /sci-biology/samtools/samtools-1.17.ebuild | |
parent | 93c735f5f1ff867aadcc947348d984ff2c5a29cb (diff) |
gentoo auto-resync : 30:03:2023 - 16:00:34
Diffstat (limited to 'sci-biology/samtools/samtools-1.17.ebuild')
-rw-r--r-- | sci-biology/samtools/samtools-1.17.ebuild | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/samtools/samtools-1.17.ebuild b/sci-biology/samtools/samtools-1.17.ebuild new file mode 100644 index 000000000000..e105621c7865 --- /dev/null +++ b/sci-biology/samtools/samtools-1.17.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit toolchain-funcs + +DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" +HOMEPAGE="http://www.htslib.org/" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" + +RDEPEND=" + dev-lang/perl + =sci-libs/htslib-$(ver_cut 1-2)*:= + sys-libs/ncurses:=[unicode(+)] + sys-libs/zlib" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" + +src_prepare() { + default + + # remove bundled htslib + rm -r htslib-* || die +} + +src_configure() { + econf \ + --with-ncurses \ + --with-htslib=system \ + CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)" +} + +src_compile() { + emake AR="$(tc-getAR)" +} + +src_install() { + default + + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples +} |