diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2020-04-12 03:41:30 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2020-04-12 03:41:30 +0100 |
| commit | 623ee73d661e5ed8475cb264511f683407d87365 (patch) | |
| tree | 993eb27c93ec7a2d2d19550300d888fc1fed9e69 /sci-biology/samtools | |
| parent | ceeeb463cc1eef97fd62eaee8bf2196ba04bc384 (diff) | |
gentoo Easter resync : 12.04.2020
Diffstat (limited to 'sci-biology/samtools')
| -rw-r--r-- | sci-biology/samtools/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-1.9-r1.ebuild (renamed from sci-biology/samtools/samtools-1.9.ebuild) | 19 |
2 files changed, 9 insertions, 12 deletions
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index cb820df291ac..45ef440561f3 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -5,5 +5,5 @@ DIST samtools-1.5.tar.bz2 4190142 BLAKE2B 1d3478f9adf76925a3721e145795ce4a4caf58 DIST samtools-1.9.tar.bz2 4440405 BLAKE2B 409265fed9ff3fcd09096c968224499750da69324eeded754e367430c0f53f9246ccc9a31e166f13ea7bc767fefab499bcfda4d008d5ac82971984c67b533aff SHA512 6c8207754615ae8dad84b278f93e7d57eb40b818efb80f6aff6aba22fde5772247724e86596e765791e3175ffbb683393dd3ddfe7681c73eef4eb4f2342bf68f EBUILD samtools-0.1.20-r3.ebuild 2363 BLAKE2B 6050d698f26b9962192cdbc6c3729bb812041fc92f4ba4490dc6f50e71c08853d6e2e4c6592c324c3efc3ac0da058e8b254475d6fc788f314798cdcaf85a4fc0 SHA512 f79e0f723d86e7c2060163a3b79e6624ea58d21e7c8ddeb87be40a7972cd97e60df82dacaae23b8a89cec2a0517ffdae8804ac71044685b40d5c5769f8964557 EBUILD samtools-1.5.ebuild 1107 BLAKE2B 2088a3fcc483de227bd92c80cd9ae2bf0257af773298bebcd077d7b2385eb43a6bfde82c7fadb0e2af3400b825e5b1b3c3c4f633cc7631beb4d0dcbb39cdd2cf SHA512 2f1701695fe3aa270bd75bedc3f847b3057ea1a6d9dca386a8f420df22ab78f51b12c8e1ca80d7d2fb1221d246047a78e914022c8e4c8bae5b0b053f3b130cfd -EBUILD samtools-1.9.ebuild 954 BLAKE2B 7019d0294f9a78d3957f56a006d0c8a401553c74c27ec14707e1eda401b9f3865089321267e873652ca8b8eff382ecb9777424b06773a4ec661ef5bd1a9267dc SHA512 4129a3ccb8e66aaa1ca1c0557acf76c27225486d1145d07fa372f48939a2c1fc30532964076e65aee5dde97c49e750f1423a0cc644966eabf0f6e54846a3bcfd +EBUILD samtools-1.9-r1.ebuild 926 BLAKE2B a71ab1165f9fad65f0ff932880a661fb43435ebc1c72839ed8f57d3a1ee8b11d5441d53404ed650d634334a8f197d4275f82831d7332bdbbe6f110506f0d0230 SHA512 f75851ece84f8863c7352fad6133fe66299cfe94561a62f7dd4a2bf9a82d2a2400be483874d109b67b643807a25d6907d47c8310732d4b13577e27af685857bd MISC metadata.xml 408 BLAKE2B 28b519bf32b116c92c1a695553637a44815ff1aaf18468a5d2d5ef448d8dd53728aadf7606c6ab53ae6bb21e88fa4a48c7b443e3d0a13a5658592dc0e768ed3c SHA512 8c8d240fd37400e43637e12f008f8f2b03fcca062883dd63ccc6956bbfc46d05709f032d146a95452db35b546ff828239b108b3a331f5295ec97872d6c9478fb diff --git a/sci-biology/samtools/samtools-1.9.ebuild b/sci-biology/samtools/samtools-1.9-r1.ebuild index bdcd115aafee..0d0f993895fc 100644 --- a/sci-biology/samtools/samtools-1.9.ebuild +++ b/sci-biology/samtools/samtools-1.9-r1.ebuild @@ -1,11 +1,9 @@ -# Copyright 1999-2018 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python2_7 ) - -inherit autotools python-single-r1 toolchain-funcs +inherit autotools toolchain-funcs DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" HOMEPAGE="http://www.htslib.org/" @@ -15,22 +13,18 @@ LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" IUSE="examples" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND=" dev-lang/perl =sci-libs/htslib-${PV}* sys-libs/ncurses:0= - sys-libs/zlib:= - ${PYTHON_DEPS}" -DEPEND="${RDEPEND} - virtual/pkgconfig" + sys-libs/zlib:=" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" src_prepare() { default - python_fix_shebang misc/varfilter.py - # remove bundled htslib rm -r htslib-* || die @@ -45,6 +39,9 @@ src_test() { src_install() { default + # varfilter.py has been retired upstream for being py2 only + rm "${ED}"/usr/bin/varfilter.py || die + if use examples; then dodoc -r examples docompress -x /usr/share/doc/${PF}/examples |