gentoo resync : 26.11.2017

2 files changed, 29 insertions, 31 deletions

diff --git a/sci-biology/vienna-rna/Manifest b/sci-biology/vienna-rna/Manifest
index a1c0d2db95c5..9f2323a9aa04 100644
--- a/sci-biology/vienna-rna/Manifest
+++ b/sci-biology/vienna-rna/Manifest
@@ -1,12 +1,10 @@
-AUX vienna-rna-2.1.1-bindir.patch 361 SHA256 cf5f393cb9ad1aba9e054d9ba7a0f876812ee88f2fa4d619ddc0b0ae2de3136a SHA512 f2e9da29f1ae3c1d3e7594367ef13ad0d44ebbcf1d9badf9d55c415e50b7e5af170dba7bcdad6438505786b941518f84ddb154cf1a6df60a229f3856cf333a94 WHIRLPOOL 5d28000ea19a6fbec28ff2a893ae77bc4ba0a70d74b5cb510a37d09563f278789379ee72e4aabc4facda873f6992ef707bd14732407547372174a1a4b9cccefc
-AUX vienna-rna-2.1.1-impl-decl.patch 354 SHA256 9f9005092b060db501b51c37f215f9ca87da53720609ce971c3d9ad6bcf2ea39 SHA512 7c288b4889f11b5cc4e6db5b5db6dfcd70843aa135181e8d819ae86c90faed4a43e08f99b47f418caa23643642e68bf5e153f4d279f7566433af1c9093ec6e8b WHIRLPOOL 02ce683c58e4f5715ab75445d9efeb02c1c104a6faa25b19739dc43931f813d6c7637a6690026d18607da98f2f7a7185ffe3491c237d1f40dd09340dc44c651e
-AUX vienna-rna-2.1.1-prll.patch 885 SHA256 0438173aa9d336ae41d7024d66dd6b07c1bac3c812750198ef0113e6a8407dee SHA512 1b80636b43e1ce9ca54431358b45f2503ef3f49b8cd049b5ef501058e1771bda3628c88e63cc1bea9a32aff5a004ccef663b47dae385a5df6071793f292dff94 WHIRLPOOL 6a0661741d7aa0f0461c7dbc68b2967e10f380cf8c42c699fe7ae568e48441bc0e726c2c49942af1f9f2557725de1545718fa66fa336de00f84ea1660b984898
-AUX vienna-rna-2.1.1-setup.py 810 SHA256 035f9c8aff6b6bc575b089e48e79bffe7da093de499a1d88eb1785346025940a SHA512 57feac6d5701a25fcda01f93f506a422d4639595a7d0ef73575af88f283fabc3730a8ea3e116ccfd417b015611c813f08ff047c9e362eaa74d2ce275ae65f8b8 WHIRLPOOL 8d9eb802bb055e30992a9509c43638e5602d434c5237729d816833f3e10f858ead48fb228728c5842a9e09b678f85091fab32b976ca8db4cc023c4fad2382b85
-AUX vienna-rna-2.1.8-bindir.patch 367 SHA256 44f43ad3cec8e05107c67f6f8420573a8f85ee80c4ac62abd6c7166192b6ecfc SHA512 aee16e7ff546aff38dd4a29d43502f4eb50778e6377a7d57f6a010dacc6a5f02162418fde27df03d1ba27f02361835d63dcefd866b8ac22f17a926c28fa4e9bf WHIRLPOOL a74ee28add9902d2a4c3219fef94d85c96934d7b113b69b3a09faa8d104c0d83d50fcea953a3073a48958f5d6e94d075697b2ceade3b21b236a2882aab4843fa
+AUX vienna-rna-2.1.1-bindir.patch 361 BLAKE2B c05d660b422519274f3c88c922d9eac79a8af055df17b78ecfd13561e76f02820d0bdc0462b66100858a8e6b1f3f8bba41cacbc142b9684e47aeb11295edef93 SHA512 f2e9da29f1ae3c1d3e7594367ef13ad0d44ebbcf1d9badf9d55c415e50b7e5af170dba7bcdad6438505786b941518f84ddb154cf1a6df60a229f3856cf333a94
+AUX vienna-rna-2.1.1-impl-decl.patch 354 BLAKE2B d9d7a4e749a2c8681dc619961291f5e082681f15729a72ee1423bc4af71e8f745a558506e7147846c84df8fb7e5d316d1bc253f8125487a4ea6aab3c05b19bd8 SHA512 7c288b4889f11b5cc4e6db5b5db6dfcd70843aa135181e8d819ae86c90faed4a43e08f99b47f418caa23643642e68bf5e153f4d279f7566433af1c9093ec6e8b
+AUX vienna-rna-2.1.1-prll.patch 885 BLAKE2B 168d4b1a4c5ff0eb92379fe5762e7f0d6b7676c774c659422923c894bfcdb9efbbe20979ed87129c688b6ced9ad19cc51716164a0056b19fbc80fc27bbd32d57 SHA512 1b80636b43e1ce9ca54431358b45f2503ef3f49b8cd049b5ef501058e1771bda3628c88e63cc1bea9a32aff5a004ccef663b47dae385a5df6071793f292dff94
+AUX vienna-rna-2.1.1-setup.py 810 BLAKE2B 7db99496739eaf21a8964d8a545204c05026ae6e5de1070d14e820e64760ffb2544a2a0247543415cc909d8938ac423be7d57dddd68103e3d9cc007ac7db7833 SHA512 57feac6d5701a25fcda01f93f506a422d4639595a7d0ef73575af88f283fabc3730a8ea3e116ccfd417b015611c813f08ff047c9e362eaa74d2ce275ae65f8b8
+AUX vienna-rna-2.1.8-bindir.patch 367 BLAKE2B 9bf3df6c604d5ac0661188d4f662ee12387f8bb30c2e3ecbd4a7bfd0a73ff5419f7a10b2fe70efd53e4b634bfdd3c1039ec000b26e7f5edbbcc4242a4edf5914 SHA512 aee16e7ff546aff38dd4a29d43502f4eb50778e6377a7d57f6a010dacc6a5f02162418fde27df03d1ba27f02361835d63dcefd866b8ac22f17a926c28fa4e9bf
 DIST ViennaRNA-2.1.1.tar.gz 5327215 SHA256 bfea440dface4562d5dfb0a1c83bf226c0697bb18aacae0dc84c555282cedebe SHA512 b272afa1146543b290db605debab2badbdbf04fcdfd6130ed3b10604255476b3472b184e9af8a0bbeaa0def266f1a167c125d6cfd02aa3f7ae463697dc5226d5 WHIRLPOOL 48b6bcd96b2ff2523ba00335cac7fe141b6ed7f037a3192e6c174297266d0f967492a67afaaa6c05f8b28fdc0eb7c9b72d0d9daba286b5dd3dca4456cc058b1f
 DIST ViennaRNA-2.1.8.tar.gz 5464683 SHA256 37a0a0b7c8a167bcdab1a85d88bcb1025ad8e00a4b00a147bf36d45dc8ca7560 SHA512 84f9db1247ff7a77aa6550b6285d9bed31fa6ce179aab26eef798c65a07f5cbd89f944630dfa5d29a43401b12a439324b57ee69047a3985e3a4f1e88dffca60e WHIRLPOOL a79f30d49c9bbe047d9fe83054dc08e94535f17417ef1f412bbcdd374d1988a8f2faf679e154c1ed1d1a75799e6cc0232d30b3adf65b3fa19978322f67ace57e
-EBUILD vienna-rna-2.1.1.ebuild 2667 SHA256 9f6008c2895d9b6588e3305ee324906ab7d0e04f92947c59710335b0e7b29d56 SHA512 22b96fce6750fd8094e6943abd8085ec5e3035f66766f56a6a840f591faaebbffece2b0174e7db078d4e96bae30762bc6d15e21bc2e45a6e086115ddb2ca4bc1 WHIRLPOOL 18416ab6427db4f63a89c64c50bf2f8c4c78a4bf266907006707e3b045d240115c3777dce226e305b13dab895333851fb716c580701baa02777c28c1ed5772c5
-EBUILD vienna-rna-2.1.8.ebuild 2588 SHA256 9e2ef28f2b8020524fa9b29b07b4988a8977d961ceaa397979ffd8adc02045c8 SHA512 4474f2bf042a31e02fd7b9882f6b5ec17fef4ba9f23eab29a39e9c09ea29414e836c029e568a905a2c315370c763384f9d84547a56a8806216dc825d51c3d378 WHIRLPOOL 0adeaaf4815be6b2c2f2b3f6a1b5e5ce6e67abe2cc38e48f49e2308670d5d6793e0358d5aa16a3443b283bea7041f78a2f40cb7e775e28c885b82529a97bd9c4
-MISC ChangeLog 3325 SHA256 5216a998d8538cee5696af5084bfa0aa5f77b3a094e83d7ccae8e46ec7f7bf8c SHA512 77246295b10a7d717b4a335f837fc2ec28468eb2dd996d6c1efb724a11e32f47c905a4216cf2f00a0333f5c760eddbb463ed5710d3f5b92cb3d7c6e3d782356b WHIRLPOOL 295dc20d4686d5e6297ad203d4222423f222de9cc0d101296ed26b122ca8728ed2787503a91f85424608eb8fcc28aed1c3313e42da93bebdd5610b5608f8f87c
-MISC ChangeLog-2015 8565 SHA256 523813579b1e0c6beebf4e9aba734bc303dd41d88d0c57b936349cd3e4c185aa SHA512 b9f29ac13ca0774fbf2ea981876b04d07f2c7f8b5b601a507a64c90d1fea5c7b43eeb18a210588524f19e950437b7d3410ceecd877b9373ef7ab83e575a8b8ee WHIRLPOOL 83f012a519a5c50a310fcae41ffcb4a86db6b9212527b44a6d85c062adce90281820ce07caf2c8ae8a42248ece67f5fc791065dae9355c8952afe2a98d7ac196
-MISC metadata.xml 1315 SHA256 5afca47f48661e11afe2649369997eef235bb1224c0632912a3f43bcd37b53f5 SHA512 5aa9cb8fb220b9d6b0ca7c0a32a26eae6eb5e8585eb73a6668ef28821196617247c8dbe0dba5f10b76d0d5a3a86b1430e3d4616ff084fcd09fa108481e08068e WHIRLPOOL 3345b4e2f80c72ac38bb93cc4d12802dfcc2a0445847bf5b4e0858740aec95fdd13247796a85392ccb3fd47e4b5740b0b28233ae3d508435bfb14f3082583736
+EBUILD vienna-rna-2.1.1.ebuild 2667 BLAKE2B f81e3a8fd09cc846b570831ee21081e246163cfa36990a42c1e582b47adb8f59b137bd656277ed1b990a0fdddbfbc67e6c49d22a896c78842362bd1e16eaab0d SHA512 22b96fce6750fd8094e6943abd8085ec5e3035f66766f56a6a840f591faaebbffece2b0174e7db078d4e96bae30762bc6d15e21bc2e45a6e086115ddb2ca4bc1
+EBUILD vienna-rna-2.1.8.ebuild 2588 BLAKE2B 5a1692be0a587cc85dcf0a60c609ff0c4eade92e5da98ce05bf2d90a195e606d9ca9262774c2c6875b1d9d53451b5043d7c4ae8a3446d4ebf3607effe039cd92 SHA512 4474f2bf042a31e02fd7b9882f6b5ec17fef4ba9f23eab29a39e9c09ea29414e836c029e568a905a2c315370c763384f9d84547a56a8806216dc825d51c3d378
+MISC metadata.xml 1324 BLAKE2B ba9d5e1f5893344fd1899e3723e1b86bac75546cde97b311fe7ef9dc2068f1a063cd5a5d2ac65d1195f532441194e8943ad2ec44db9a5c614ed0c8d894a900bb SHA512 8198db695aea5244b62fab23fd0a53a0657f8d37cc741f60869a39374e97c725b564086d852e37216c584083168881eba246f59b840d6a41bfe9246d3bd88d4b
diff --git a/sci-biology/vienna-rna/metadata.xml b/sci-biology/vienna-rna/metadata.xml
index 861e9e38c31c..bbc3d41fb4a6 100644
--- a/sci-biology/vienna-rna/metadata.xml
+++ b/sci-biology/vienna-rna/metadata.xml
@@ -1,25 +1,25 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-  <maintainer type="project">
-    <email>sci-biology@gentoo.org</email>
-    <name>Gentoo Biology Project</name>
-  </maintainer>
-  <longdescription>
-	The Vienna RNA Package consists of a C code library and several
-	stand-alone programs for the prediction and comparison of RNA secondary
-	structures. RNA secondary structure prediction through energy
-	minimization is the most used function in the package. We provide three
-	kinds of dynamic programming algorithms for structure prediction: the
-	minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a
-	single optimal structure, the partition function algorithm of
-	(McCaskill 1990) which calculates base pair probabilities in the
-	thermodynamic ensemble, and the suboptimal folding algorithm of
-	(Wuchty et.al 1999) which generates all suboptimal structures within a
-	given energy range of the optimal energy. For secondary structure
-	comparison, the package contains several measures of distance
-	(dissimilarities) using either string alignment or tree-editing
-	(Shapiro and Zhang 1990). Finally, we provide an algorithm to design
-	sequences with a predefined structure (inverse folding).
-</longdescription>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+	<longdescription>
+		The Vienna RNA Package consists of a C code library and several
+		stand-alone programs for the prediction and comparison of RNA secondary
+		structures. RNA secondary structure prediction through energy
+		minimization is the most used function in the package. We provide three
+		kinds of dynamic programming algorithms for structure prediction: the
+		minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a
+		single optimal structure, the partition function algorithm of
+		(McCaskill 1990) which calculates base pair probabilities in the
+		thermodynamic ensemble, and the suboptimal folding algorithm of
+		(Wuchty et.al 1999) which generates all suboptimal structures within a
+		given energy range of the optimal energy. For secondary structure
+		comparison, the package contains several measures of distance
+		(dissimilarities) using either string alignment or tree-editing
+		(Shapiro and Zhang 1990). Finally, we provide an algorithm to design
+		sequences with a predefined structure (inverse folding).
+	</longdescription>
 </pkgmetadata>