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author | V3n3RiX <venerix@redcorelinux.org> | 2021-08-26 00:09:36 +0100 |
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committer | V3n3RiX <venerix@redcorelinux.org> | 2021-08-26 00:09:36 +0100 |
commit | b1c81de4fadbd00897700a7321f03b390d952b2e (patch) | |
tree | e6cc812351d4f105c110cfc363ebb497e996f47a /sci-biology/wise/wise-2.4.0_alpha-r1.ebuild | |
parent | 7c59acba5699c9c58090a7a738669669a7307023 (diff) |
gentoo resync : 26.08.2021
Diffstat (limited to 'sci-biology/wise/wise-2.4.0_alpha-r1.ebuild')
-rw-r--r-- | sci-biology/wise/wise-2.4.0_alpha-r1.ebuild | 71 |
1 files changed, 71 insertions, 0 deletions
diff --git a/sci-biology/wise/wise-2.4.0_alpha-r1.ebuild b/sci-biology/wise/wise-2.4.0_alpha-r1.ebuild new file mode 100644 index 000000000000..a033ffd011bb --- /dev/null +++ b/sci-biology/wise/wise-2.4.0_alpha-r1.ebuild @@ -0,0 +1,71 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit toolchain-funcs + +MY_PV="${PV/_}" +MY_P="${PN}${MY_PV}" +DESCRIPTION="Intelligent algorithms for DNA searches" +HOMEPAGE="http://www.ebi.ac.uk/Wise2/" +SRC_URI=" + ftp://ftp.ebi.ac.uk/pub/software/${PN}2/${MY_P}.tar.gz + https://dev.gentoo.org/~mgorny/dist/${P}-patchset.tar.bz2 +" +S="${WORKDIR}"/${MY_P} + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc" + +RDEPEND="~sci-biology/hmmer-2.3.2" +DEPEND="${RDEPEND}" +BDEPEND=" + app-shells/tcsh + dev-lang/perl + virtual/latex-base +" + +PATCHES=( + "${WORKDIR}"/${P}-patchset/${P}-glibc-2.10.patch + "${WORKDIR}"/${P}-patchset/${P}-cflags.patch +) + +src_prepare() { + default + cd docs || die + cat ../src/models/*.tex ../src/dynlibsrc/*.tex | perl gettex.pl > temp.tex || die + cat wise2api.tex temp.tex apiend.tex > api.tex || die + eapply "${FILESDIR}"/${PN}-api.tex.patch +} + +src_compile() { + tc-export CC + emake -C src all + + if use doc; then + cd docs || die + for i in api appendix dynamite wise2 wise3arch; do + latex ${i} || die + latex ${i} || die + dvips ${i}.dvi -o || die + done + fi +} + +src_test() { + cd src || die + WISECONFIGDIR="${S}/wisecfg" emake test +} + +src_install() { + dobin src/bin/* src/dynlibsrc/testgendb + + insinto /usr/share/${PN} + doins -r wisecfg + + use doc && dodoc docs/*.ps + newenvd "${WORKDIR}"/${P}-patchset/${PN}-env 24wise +} |