gentoo auto-resync : 25:02:2025 - 19:25:33

4 files changed, 20 insertions, 3 deletions

diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index 64c07a4638ee..f585da4b9704 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
diff --git a/sci-biology/yass/Manifest b/sci-biology/yass/Manifest
index 9241b39b723c..8a0e8e730075 100644
--- a/sci-biology/yass/Manifest
+++ b/sci-biology/yass/Manifest
@@ -1,4 +1,5 @@
 AUX 1.14-as-needed.patch 6046 BLAKE2B d2d7d5f71a4db2780d1485fc9074caac6916428e3b3e28fc9553e0be29b0a58182b2af325b577934b94d831b81d1731226000cad4bdbdc297c6cd3dbf627b94e SHA512 4b9227bb16556084121336b01d6d02257ccf7e35765db53b4a6ba2b0a41946a6b600a9dd05156b763b4b37f18d30d2c9111eeca79a1656f757199ba1cda5b3dd
+AUX yass-1.14-lowmem-define.patch 276 BLAKE2B 8d68829f59e72a062c9172fb758df0e9423048b7b08b9dd97b977493bd2f8fa1a1754d51559c3fba55dcd0a7731b84cb70e46ae96f00d69181492d9b1a64d823 SHA512 f5c83dbb9fb467b45cb37fef185b6347729c1ab358583ffe759ea62671016328f7823a7f441503fe3fed459a0efae76b2ab55df0fc5e8a9cbfb2f750272dc47c
 DIST yass-1.14.tar.gz 235530 BLAKE2B 55b7e8e7834f3a76a09e5e509884b391053fe97a7d5aeb3132009c8050014fb6dae92f7b246c85646a872fd5bde7a4b8c3bd0124fb38c7d0f648b85c63d99ad7 SHA512 fdfac6f391848d0bd35829a966721a242697b0832803092bd7ea2116149332642ddf3bf5f095fe707f6edbbb9454efe068852fe6d5cdfe937445d9d32a521fa2
-EBUILD yass-1.14-r3.ebuild 590 BLAKE2B 5a8824abb72d60e6ba5026b1fe1a8102f24306715c79af1338470a5c22661e5be60ee44461251183b5485334d776f01fdf87d1d1ac7239939dfcf4e39f0cf985 SHA512 9df42f1b2c8fa9bdef143e0cb9ab55f1f1cad5d3941d023ad3b7dd5a5d2a7c665e6173d9728c08bfe7031177ec9958b4d7b184fbdaa11844d1badba9113b3d72
+EBUILD yass-1.14-r4.ebuild 631 BLAKE2B d98ae545e6a354ee2f9d4cda658f19fdca6e91ce86984e5110a2fc31c722aebed0f4477ed44e4242c756e44fd81ee5303fb27a560498eb54aa16c162afce1050 SHA512 7c026896261685596e6f59e7286e29fdd11984e65bfcb95c795ea36c95e7651d61947dc9bc9888602d1a838e7ed06ac34d894c9725ee6f11aa313dd6896e5e1f
 MISC metadata.xml 366 BLAKE2B 5dea39fae4ca5373e9bef9c525882e79ebe597fd3b9a6ae9df1c2f1800a63497bc85ea22ad0783f751bb18ac5fa66ebbb2379c0bb0596f7e0b14a964bdec55e3 SHA512 60f205d4a8b021b5390a2982c1ce2ab6844070e0ef44b6755bf743a1ec0aa7cb5bd507ac8f39c1230d4e54b58c976d2aa72763b8b0b36beaed5cd417448c64f6
diff --git a/sci-biology/yass/files/yass-1.14-lowmem-define.patch b/sci-biology/yass/files/yass-1.14-lowmem-define.patch
new file mode 100644
index 000000000000..64f2e216a05b
--- /dev/null
+++ b/sci-biology/yass/files/yass-1.14-lowmem-define.patch
@@ -0,0 +1,13 @@
+Add missing function definition to hash.c
+Whole hash.c is used only if USE=lowmem is enabled.
+https://bugs.gentoo.org/919215
+--- a/src/hash.h
++++ b/src/hash.h
+@@ -57,6 +57,7 @@
+   
+ }Table_hash;
+ 
++long int hashVerifie (Table_hash *table, char *mess,long int diag);
+ 
+ /*
+  *
diff --git a/sci-biology/yass/yass-1.14-r3.ebuild b/sci-biology/yass/yass-1.14-r4.ebuild
index be75847e2ad0..a484aca4269f 100644
--- a/sci-biology/yass/yass-1.14-r3.ebuild
+++ b/sci-biology/yass/yass-1.14-r4.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2024 Gentoo Authors
+# Copyright 1999-2025 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -14,7 +14,10 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="lowmem threads"
 
-PATCHES=( "${FILESDIR}"/${PV}-as-needed.patch )
+PATCHES=(
+	"${FILESDIR}"/${PV}-as-needed.patch
+	"${FILESDIR}"/${P}-lowmem-define.patch
+)
 
 src_prepare() {
 	default