gentoo resync : 28.04.2018

10 files changed, 13 insertions, 17 deletions

diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index e8b2651cb0ec..c155261853fa 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
diff --git a/sci-biology/biopandas/Manifest b/sci-biology/biopandas/Manifest
index 6f225c710525..da5391211d4c 100644
--- a/sci-biology/biopandas/Manifest
+++ b/sci-biology/biopandas/Manifest
@@ -1,5 +1,5 @@
 DIST biopandas-0.1.4.tar.gz 5386 BLAKE2B 0ee7f9ddc9d6c51466ad601e0144ef4f073d7e4dd41be804ff9a0f1cd9e00f0b0dffb240985a92bfa948588521e8a17c68e498ec2b824421fc73754d17cb2722 SHA512 efd7ec94bbcc069d8bf0d160480e7ef2c7c0f9febe21a684b46b6b14c69cebb0b3d9f2c315897be6b0ae888ed40731e2f5a16dee45b9c932b05c2c0209b62b84
 DIST biopandas-0.2.1.tar.gz 209379 BLAKE2B 839a6f569f12b95c9b1c75dc755d009c77d7ef8224e517aed5026ffa6c33bd3826fe3862fec03469e967005a500600782fc372951d61358e2fe3bb56af734228 SHA512 0ea7aec84251d8d6ec4736c4968228133bd8622afb17d6916287168cb9f9757c5a97a4d5a52ac0e2f30027bf0edf9d76413db142f70d606f1359b8a4e06de7c8
-EBUILD biopandas-0.1.4.ebuild 1063 BLAKE2B c3ff0bbdae770568b9e21d606d44a30fc2cad09b06276b8f9037f210992b2a0f5191b12d5c2db1a325d8d8db0ade364d63ea4899adbd86537f92a2cb8bb881f2 SHA512 e17fe5110a1a3d5b0c4da0290177ebf86b36ae2811bb3342dcdc415247702633b1e8bf8138621b5c2d6572071ec5792b5e8d4ae24e90ade12856400582a74409
-EBUILD biopandas-0.2.1.ebuild 1065 BLAKE2B 40857a9dc256083ba9869198cc88a6061eca006bbbe717ea8381b6aedb0c5bb6638a7d31fbd5c21a0aaa7dbf3b3703c3b10a998c873193a9861216041239f652 SHA512 aaaa676c18347589a3784eddd14e76db13b6c414dff48cffc9e2c2161cc76e90c0034dc2dde7136e91e9a19fa2b771e89a7e38361321bcf5245fe2607c5d5b17
+EBUILD biopandas-0.1.4.ebuild 1064 BLAKE2B a7bc5d9755446107447ec155c655d0a00009e55e5be6394cabcc3bd29e8928ee7ac55ae612ea68875eab72011ecceecf08f9438d2b451ea8818eb7374f630dbe SHA512 8698dc5efc114fb5645200272d154ae4d938f7fc69daca042e0420d08ee76f151e66178bf8e42944dbd8e1a1028e38dc710258368b5a9ab3b52c75a4703431cb
+EBUILD biopandas-0.2.1.ebuild 1066 BLAKE2B 6e435b3e5cec6751551eacfaf351df69b16dfd43b4e4173aed3a7dfea3740dd7e395b4d78092267a43a38d6e4b5ccee0d5e4f688174125b6a8498f594ab3bbf7 SHA512 7226499bd7d132150b6c2caeb7fcbdda3ff8d2fd47755d535834584c6d3aa426b65d30a87d7265f638be9019b0fbf0f5f73e9dd3495c468c6a79624a1e908916
 MISC metadata.xml 536 BLAKE2B e3cb776d0332fff486a7e1ea1353c54694ff687d4685bbb51728db0ed2025bb3d09d39cf7c9ea9f11546cbf9c4727661348e2f5fdfc13ffac2329ef6dfbe7450 SHA512 502803e30ecfac53516b56501a7bffeb49c3c0bc44ce5b3dd87aac5c745de614c235523ba3be374fcbede1a9a7bcf11c328abb27d82e087b275303f38b80b166
diff --git a/sci-biology/biopandas/biopandas-0.1.4.ebuild b/sci-biology/biopandas/biopandas-0.1.4.ebuild
index 9e1fdc736873..4a1008eda8a8 100644
--- a/sci-biology/biopandas/biopandas-0.1.4.ebuild
+++ b/sci-biology/biopandas/biopandas-0.1.4.ebuild
@@ -14,7 +14,7 @@ DESCRIPTION="Molecular Structures in Pandas DataFrames"
 HOMEPAGE="
 	https://rasbt.github.io/biopandas/
 	https://github.com/rasbt/biopandas
-	https://pypi.org/project/BioPandas"
+	https://pypi.org/project/BioPandas/"
 SRC_URI="mirror://pypi/${MY_P:0:1}/${MY_PN}/${P}.tar.gz"
 
 LICENSE="BSD"
diff --git a/sci-biology/biopandas/biopandas-0.2.1.ebuild b/sci-biology/biopandas/biopandas-0.2.1.ebuild
index c8a752dce84f..315f6a4e0160 100644
--- a/sci-biology/biopandas/biopandas-0.2.1.ebuild
+++ b/sci-biology/biopandas/biopandas-0.2.1.ebuild
@@ -14,7 +14,7 @@ DESCRIPTION="Molecular Structures in Pandas DataFrames"
 HOMEPAGE="
 	https://rasbt.github.io/biopandas/
 	https://github.com/rasbt/biopandas
-	https://pypi.org/project/BioPandas"
+	https://pypi.org/project/BioPandas/"
 SRC_URI="mirror://pypi/${MY_P:0:1}/${MY_PN}/${P}.tar.gz"
 
 LICENSE="BSD"
diff --git a/sci-biology/foldingathome/Manifest b/sci-biology/foldingathome/Manifest
index 5506311dda2f..66801366f019 100644
--- a/sci-biology/foldingathome/Manifest
+++ b/sci-biology/foldingathome/Manifest
@@ -1,5 +1,5 @@
 AUX 7.3/folding-conf.d 339 BLAKE2B 93a0b3672777ad737ce27694aaca547634c375e180ad3c28c3adb9cae2cb1c054ff9458ee1fe04b70fe9841ae67d41198bcecfc4826d05d5de8df2759bd80910 SHA512 6fd10dc938262c05831e68176e93a24869bb6991508bcc48ece487b701788026561d073025bd347cd77ede13ca26f6b284861f30b07becf72ea77e4db22867b3
 DIST fahclient_7.4.4-32bit-release.tar.bz2 4313096 BLAKE2B bb0c0e2d2cb577e0e3e668aeb3521e900a1947dc42fd18e2976216de113e725c3c68872b1c43666a81acfbb2a447d9facf774d7011c451779ee1fb310caff91f SHA512 6a660b99c97c83518863ef671ae760b15e3ca33cacfde6485c11b29e98fab15a9d27833ba307c95b39e6ffb7f271cd0c7a47060ec5b8614961e9a5ee46494b3f
 DIST fahclient_7.4.4-64bit-release.tar.bz2 4451080 BLAKE2B a22b65d0415a291a53d222fbc98f62c93490b08530f1c091b6cf9fb8e1abe4b7a5649c4c008f00a9a75ab4d2066fe5ed1fcb70ef08430842a9643a958a90a1a4 SHA512 40fc93c4ec682342040a4c7a9fd92dc9d1727ef60af6d3fa3191575719c7e595868f289727561f6902f8374061f7b51dfcf565ac047706336ef4ae9a589ff9a8
-EBUILD foldingathome-7.4.4-r2.ebuild 4130 BLAKE2B 015209c4b41f95607e9ada0c8a0c93efc57980704226ca08f9b88914d371d6f3eabfd5024b0a3fd44f0619231c998fe3d151f1905fa5d7fad1304e4f0c961009 SHA512 3bd334277c1ffac0e26f4e773208441817c45aa9f40bd0cd169fc7cb782e8cc30058ee34173e60bbc0c5c18015df9b0714735044ac37c36131e8cb9ccf8e9608
+EBUILD foldingathome-7.4.4-r3.ebuild 4209 BLAKE2B 1520bead35b38a5e09e4a055eb2a819ad423595599256493b7e2f2b01ef499a566d2d26f4640945801e5b44dcd34028500cfe4e204525df7eba0dfb53a6c301c SHA512 b3acd07e111a5c023617f36317e7ceb67eb7ab52e0ac0effba07a497fd38963f74a2d5750438e1dc280c920e343a171e790b632090f9748ab4e1254c75a484f4
 MISC metadata.xml 360 BLAKE2B c0ef2b11cc9e6498a420dcd2e6c83ee71f7e286c3e78218257c56350bd2c0921732d48cc4207a31bcfd965a4a9dca65e9bdc4d62831dc430e86541d36fc691f8 SHA512 687f1516a8ec80270fa173b0a7d7c259f3f02ffefa69d3175b72e170bd11aeb786563edb43214390a83b6b61b1231e2734124e50bb2a523d1a564bc3b143f00b
diff --git a/sci-biology/foldingathome/foldingathome-7.4.4-r2.ebuild b/sci-biology/foldingathome/foldingathome-7.4.4-r3.ebuild
index 92d3b277ea7a..5df01b800ba7 100644
--- a/sci-biology/foldingathome/foldingathome-7.4.4-r2.ebuild
+++ b/sci-biology/foldingathome/foldingathome-7.4.4-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -75,11 +75,11 @@ Documentation=https://folding.stanford.edu/home/the-software/
 [Service]
 Type=simple
 User=foldingathome
-WorkingDirectory="${EPREFIX}/opt/foldingathome"
+WorkingDirectory=${EPREFIX}/opt/foldingathome
 PIDFile=/run/fahclient.pid
-ExecStart=./FAHClient -v start
-ExecReload=./FAHClient -v restart
-ExecStop=./FAHClient -v stop
+ExecStart=${EPREFIX}/opt/foldingathome/FAHClient -v start
+ExecReload=${EPREFIX}/opt/foldingathome/FAHClient -v restart
+ExecStop=${EPREFIX}/opt/foldingathome/FAHClient -v stop
 KillMode=process
 
 [Install]
diff --git a/sci-biology/picard/Manifest b/sci-biology/picard/Manifest
index 43e85b49afda..df4b520ca2aa 100644
--- a/sci-biology/picard/Manifest
+++ b/sci-biology/picard/Manifest
@@ -1,4 +1,4 @@
 AUX 1.103-gentoo.patch 5667 BLAKE2B 7d096dfb289a121a9e4cd27614dbf106fcbd17ea39666dd11508c7e58ec098c653c6bfb60ce69f173e3da25963c5d7335affb659566cf43d26f287d2898c37b2 SHA512 966b0cc9ffc5bbf4b23c003538e01533344df496c38797ab84fcd2b382e91e003cc797a0c6ff5a878406b1fc169c1b044bce447b68770c665cec327762f08f6d
 DIST picard-1.103.tar.bz2 15037887 BLAKE2B a4df3aad9242749964a997698d80634e14ce19af575de9609655483eba247d0968cbdc856dbf00d854ec7eae37da8f3d047c50e4b78843e9d08441d9ef18eff6 SHA512 f8db38a8fee278868cd2ea11f78275a5defadf36e053703133f0f90836df8e3a3ca08635fd7c02967ed99b52bc5baffa600a34b58a94288d3eede7f5c3dd79ca
 EBUILD picard-1.103.ebuild 1513 BLAKE2B 1755995201677c74108fbc0af289b46c1c518a620b87019adab0f90dd2fa6abc5a4d0135f2883f9716aadb96f60b76199fba109292ae4ff65b29dac82023e119 SHA512 e731bbabeed2d16707ad900a8a271143542c3c851c4becd240d79158b2f806bf5a4faf22b7c466427c406392faefc51628be621ec5b2d429a47a716d003a66c1
-MISC metadata.xml 452 BLAKE2B 0666cd14d39f192c1e1f48ef39bf276926211f0e6cf0c543807547bfbd8f460adf9792f0cd3fd1c061bd6fc319c68248bf5baff9b7183a12d613dbe62e2e3fb2 SHA512 ed6d1d46bfddc918f869d55be92079c75fd720a19b681b444e6214c94753a917e3a1621b4e4f9dbdc1a8e737e118856fb60e2d7a5dbebd6dc57ffc0391bb6eaf
+MISC metadata.xml 337 BLAKE2B 1849aa02406f03615330b7042432725da8209ed77f86fb3590b60501f0fa9093c76ce03ec4317f436ff2bd6ca8cdeaa3baebeb8729eb8e21272279bc7f9c6d8d SHA512 4eabbbfda109fb6c57df99156ca9dc48a05088a40f02276c654341e91b010ed2cc93ddf0da1c3ca0870ffcd8b82fbe0f0dc9d165f62e671fb88af6d25e8de661
diff --git a/sci-biology/picard/metadata.xml b/sci-biology/picard/metadata.xml
index 513e8631c4c2..34f79a25054b 100644
--- a/sci-biology/picard/metadata.xml
+++ b/sci-biology/picard/metadata.xml
@@ -1,10 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<maintainer type="person">
-		<email>ercpe@gentoo.org</email>
-		<name>Johann Schmitz (ercpe)</name>
-	</maintainer>
 	<maintainer type="project">
 		<email>sci-biology@gentoo.org</email>
 		<name>Gentoo Biology Project</name>
diff --git a/sci-biology/pysam/Manifest b/sci-biology/pysam/Manifest
index 24f60a28e9f5..0172dca78024 100644
--- a/sci-biology/pysam/Manifest
+++ b/sci-biology/pysam/Manifest
@@ -1,4 +1,4 @@
 AUX pysam-0.12-fix-buildsystem.patch 2356 BLAKE2B 95542f99b411a00eeaa24836cb7489bf2bbf690d804669f69f6f1a8c07f66d9c6ef34624eb511036cd36b1268b49959d38db497cb557e9cc40f3a35b2d349f4d SHA512 24c5c521ddd2e8a88a713c2cab2aedb0cd9a589e2ae87696a60815f9714e2b222a5e0824c5ac293f9023f6f772a599256a5c07228b5a2df40b62a1bf7616c84a
 DIST pysam-0.12.0.1.tar.gz 2672020 BLAKE2B 4bc6330405724f7b1126da91ba3338687f4dd17f015895f42b971f22ffbb6c32eda65e2667035a4cc830c0370b34d95d3aa6ae0f026b2b3276af1fd6841eed28 SHA512 31460ca98ad2ac5489905ffce76bfbb5bf4a295159f3cc8e088c78dcfbfc34b30d6f7871fd1454de01da98f82b7438ac2aca678a771d7b97ae0029a418f29f1d
-EBUILD pysam-0.12.0.1.ebuild 1200 BLAKE2B bda63a62df74d841da55bdbc9ff8fe53d2e2e26836b0ffa339272d74d2318f030caecba25c0e9efb0ba404104f4e8a3446b59d647fba45e57bd28d5fd54b451f SHA512 98feb2846998b0f429520dec5fc28882bbdfe1975b60e9775d4667b8c5698732a72ef1d167ed0126e52ca946b823f92d25cab91aabae77a081353d0d0b058796
+EBUILD pysam-0.12.0.1.ebuild 1201 BLAKE2B 993515294284464b345fd755747a557fae1578e11fc2b37a7389cbd7432e1e2bb022c8d64e5012d152efae8a03b60f67e231c7124711b8b805eb1bf2ee0c5590 SHA512 8e54c955bc1e479b8ebbd4fe463a780c301c7819fab8685af77c00199d81a6b31706671f534233451d7769fad1dca25b86cc062288fc04ec6b8b05b9594864d6
 MISC metadata.xml 410 BLAKE2B ed86e3ffe38a306e581762625b37cf6596dc2a2ba404406ab12f681d5b48529764e281d40411bedbdf6016bc57d02adb705e8c8703b8120cf89b4961f75bed67 SHA512 38bcd511561b2466ef5d39473a6d1a838af0aff6eeb520307331fe0fc3177be3062fa0be39f48a333bb8e31841115cafd9dfb80a5985c316c9b8df1609f00810
diff --git a/sci-biology/pysam/pysam-0.12.0.1.ebuild b/sci-biology/pysam/pysam-0.12.0.1.ebuild
index d8328951bb17..a3f81bd40a96 100644
--- a/sci-biology/pysam/pysam-0.12.0.1.ebuild
+++ b/sci-biology/pysam/pysam-0.12.0.1.ebuild
@@ -10,7 +10,7 @@ inherit distutils-r1
 DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
 HOMEPAGE="
 	https://github.com/pysam-developers/pysam
-	https://pypi.org/project/pysam"
+	https://pypi.org/project/pysam/"
 SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
 
 LICENSE="MIT"