gentoo auto-resync : 20:07:2024 - 12:29:37

4 files changed, 0 insertions, 194 deletions

diff --git a/sci-chemistry/aqua/Manifest b/sci-chemistry/aqua/Manifest
deleted file mode 100644
index de2fa35a0b3d..000000000000
--- a/sci-chemistry/aqua/Manifest
+++ /dev/null
@@ -1,5 +0,0 @@
-AUX aqua-3.2-flags.patch 4211 BLAKE2B 032048ea0f08aa798758489beda88aa0f07635e7ee965d25791b73a2995224920392c7eaf52b0da97d4e0df70df9901d5dd915c2a0adc499e6e17160e2fac467 SHA512 059cea5403fb4cb01b0fcd4d2a2fe4b4aea725e9362a6188ccd3756ced35e324cda5efb21d3ad2a95a842e9d83f8e728a16b36e4b6a479ae32da8816d7eafdfc
-DIST aqua-3.2-nmr_manual.tar.gz 632031 BLAKE2B 1f595a111af4b5e91fc059b5af590a6c37a44654fcae42e6003b40cf7fdf542cb772d3ef25bf2475455ce8638cd0aebcbbc8c66bb57688ce919af2eac9b535cb SHA512 9b125b03507afebf15301c893efffae9be4e9695b9c577e5c2a80e83b620d04b4c27e867adf06336afa1556eddc96aa97de936028e503b1e85e156542664da0f
-DIST aqua3.2.tar.gz 688408 BLAKE2B 898e0e3bbc4ff7b6ce8a8128ce6ffef45db607c74e2d78a70cefc26818d39049e4d18159b65250a3651112f64318ccce838037e563d3a985be7ef369d89b594e SHA512 1939f662a68122da613368aa106d7a31525903014420035eba9d10c3bd99b04d654d156328d308673003854233a02c1da48c036f3187fa1f0f303cc5928edd6a
-EBUILD aqua-3.2-r3.ebuild 2087 BLAKE2B 053412cfb8802a1fd07e2ab53e19d8cca8f422063bd0d64723e2152b4d2fce4fc4597db2fd906b08b899937fac27c390abf73e1638f0a77f356e3bf86dea7d7f SHA512 1d5e6cdefb415613ade4170837b0092772a2c76bbb29b4c10e6ef75044f380c724371509fc5ec50144828bc6dcbd04b282135a0147561b424267331ad79b802a
-MISC metadata.xml 266 BLAKE2B a03b1fcf7148cf43fb829f619c218219bcd4e66c45d12f563113401e3ae0b06cb0df9a8c0af01ea97e21453638d627d420e7df5b9b0d330ef1752253faa8aa32 SHA512 1dc293fa0d0296eba18ac2cbcd57f47ffc6cc822bf0d76e1cc86cb046700201f703d705375b5555b88cbe8780ef3750be05b8f9f8de092693e6d165c1734e049
diff --git a/sci-chemistry/aqua/aqua-3.2-r3.ebuild b/sci-chemistry/aqua/aqua-3.2-r3.ebuild
deleted file mode 100644
index 78d987ec1460..000000000000
--- a/sci-chemistry/aqua/aqua-3.2-r3.ebuild
+++ /dev/null
@@ -1,97 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit fortran-2 toolchain-funcs
-
-DESCRIPTION="Program suite in this distribution calculates restraint violations"
-HOMEPAGE="http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html"
-SRC_URI="
-	${PN}${PV}.tar.gz
-	doc? ( ${P}-nmr_manual.tar.gz )"
-
-SLOT="0"
-LICENSE="procheck"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc examples"
-
-RDEPEND="sci-chemistry/procheck"
-DEPEND="app-shells/tcsh"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}"/${PN}${PV}
-
-PATCHES=(
-	"${FILESDIR}"/${P}-flags.patch
-)
-
-pkg_nofetch() {
-	elog "Please visit http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/download.html"
-	elog "And follow the instructions for downloading the following into your DISTDIR"
-	elog "directory:"
-	elog "  ${PN}${PV}.tar.gz"
-	if use doc; then
-		elog "  nmr_manual.tar.gz  ->  ${P}-nmr_manual.tar.gz"
-	fi
-}
-
-src_prepare() {
-	sed \
-		-e 's:nawk:gawk:g' \
-		-e "s:/bin/gawk:${EPREFIX}/usr/bin/gawk:g" \
-		-e "s:/usr/local/bin/perl:${EPREFIX}/usr/bin/perl:g" \
-		-i $(find . -type f) || die
-	default
-}
-
-src_compile() {
-	cd src || die
-	emake \
-		MYROOT="${WORKDIR}" \
-		CC="$(tc-getCC)" \
-		FC="$(tc-getFC)" \
-		CFLAGS="${CFLAGS} -I../sub/lib" \
-		FFLAGS="${FFLAGS}" \
-		LDFLAGS="${LDFLAGS}" \
-		exth
-	emake \
-		MYROOT="${WORKDIR}" \
-		CC="$(tc-getCC)" \
-		FC="$(tc-getFC)" \
-		CFLAGS="${CFLAGS} -I../sub/lib" \
-		FFLAGS="${FFLAGS}" \
-		LDFLAGS="${LDFLAGS}"
-}
-
-src_install() {
-	rm -f scripts/conv* || die
-	dobin bin/* scripts/*
-	dosym AquaWhat /usr/bin/qwhat
-	dosym AquaHow /usr/bin/qhow
-	dosym AquaPseudo /usr/bin/qpseudo
-	dosym AquaDist /usr/bin/qdist
-	dosym AquaCalc /usr/bin/qcalc
-	dosym AquaAssign /usr/bin/qassign
-	dosym AquaRedun /usr/bin/qredun
-	dosym AquaCompl /usr/bin/qcompl
-
-	dodoc HISTORY HOW_TO_USE NEW README doc/*
-	dohtml html/*
-
-	insinto /usr/share/${PN}
-	doins data/*
-	if use examples; then
-		doins -r exmpls
-	fi
-
-	if use doc; then
-		dohtml -r manual
-	fi
-
-	cat >> "${T}"/34aqua <<- EOF
-	AQUADATADIR="${EPREFIX}/usr/share/${PN}"
-	EOF
-	doenvd "${T}"/34aqua
-}
diff --git a/sci-chemistry/aqua/files/aqua-3.2-flags.patch b/sci-chemistry/aqua/files/aqua-3.2-flags.patch
deleted file mode 100644
index a60841b8ce08..000000000000
--- a/sci-chemistry/aqua/files/aqua-3.2-flags.patch
+++ /dev/null
@@ -1,84 +0,0 @@
-diff --git a/src/makefile b/src/makefile
-index 3113471..dd7a320 100644
---- a/src/makefile
-+++ b/src/makefile
-@@ -176,47 +176,46 @@ nrutil.h:
- # Executable files
- 
- $(BIN)/AquaWhat:    AquaWhat.o $(OBJECTS) $(R_OBJECTS) $(RNG_OBJECTS)
--	$(CC) -o $(BIN)/AquaWhat AquaWhat.o $(OBJECTS) $(R_OBJECTS) $(RNG_OBJECTS) $(LDFLAGS)
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaWhat AquaWhat.o $(OBJECTS) $(R_OBJECTS) $(RNG_OBJECTS)
- 
- $(BIN)/AquaHow:	    AquaHow.o $(OBJECTS) $(R_OBJECTS) AquaFuncts_dr.o $(RNG_OBJECTS)
--	$(CC) -o $(BIN)/AquaHow AquaHow.o $(OBJECTS) $(R_OBJECTS) AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS)
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaHow AquaHow.o $(OBJECTS) $(R_OBJECTS) AquaFuncts_dr.o $(RNG_OBJECTS)
- 
- $(BIN)/AquaPseudo:  AquaPseudo.o $(OBJECTS) $(R_OBJECTS) 
--	$(CC) -o $(BIN)/AquaPseudo AquaPseudo.o $(OBJECTS) $(R_OBJECTS) $(LDFLAGS)
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaPseudo AquaPseudo.o $(OBJECTS) $(R_OBJECTS)
- 
- $(BIN)/AquaDist:    AquaDist.o $(OBJECTS) 
--	$(CC) -o $(BIN)/AquaDist AquaDist.o $(OBJECTS) $(LDFLAGS) -lm
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaDist AquaDist.o $(OBJECTS) -lm
- 
- $(BIN)/AquaCalc:    AquaCalc.o $(OBJECTS) $(RNG_OBJECTS)
--	$(CC) -o $(BIN)/AquaCalc AquaCalc.o $(OBJECTS) $(RNG_OBJECTS) $(LDFLAGS) -lm
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaCalc AquaCalc.o $(OBJECTS) $(RNG_OBJECTS) -lm
- 
- $(BIN)/AquaAssign:  AquaAssign.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS)
--	$(CC) -o $(BIN)/AquaAssign AquaAssign.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS)
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaAssign AquaAssign.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS)
- 
- $(BIN)/AquaCompl:  AquaCompl.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) 
--	$(CC) -o $(BIN)/AquaCompl AquaCompl.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS) -lm  
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaCompl AquaCompl.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) -lm
- 
- $(BIN)/AquaRedun:  AquaRedun.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) 
--	$(CC) -o $(BIN)/AquaRedun AquaRedun.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS)
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaRedun AquaRedun.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS)
- 
- $(BIN)/testnew:	    testnew.o $(OBJECTS)
--	$(CC) -o $(BIN)/testnew testnew.o $(OBJECTS) $(LDFLAGS)
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/testnew testnew.o $(OBJECTS)
- 
- $(BIN)/getproj:    getproj.c 
--	$(CC) -o $(BIN)/getproj -O getproj.c
-+	$(CC) $(CFLAGS) $(LDFLAGS) -o $(BIN)/getproj getproj.c
- 
- $(BIN)/AquaPlot:    AquaPlot.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o
--	$(CC) -o $(BIN)/AquaPlot AquaPlot.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o $(LDFLAGS)
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaPlot AquaPlot.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o
- 
- $(BIN)/Qext:	   Qext.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o
--	$(CC) -o $(BIN)/Qext Qext.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o $(LDFLAGS)
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/Qext Qext.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o
- 
- $(BIN)/StarTest:	StarTest.o
--	$(CC) -o $(BIN)/StarTest StarTest.o $(LDFLAGS) $(STARFLAGS) $(STARLIBS)
-+	$(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/StarTest StarTest.o $(STARFLAGS) $(STARLIBS)
- 
- exth:		exth.f
--	f77 -o exth -O2 exth.f
--	strip exth
-+	$(FC) $(FFLAGS) $(LDFLAGS) -o exth -O2 exth.f
- 
- 
- # Object files
-@@ -269,7 +268,7 @@ AquaCommon.o:	AquaCommon.c AquaCommon.h nrutil.h \
- 	$(CC) -c AquaCommon.c $(CFLAGS)
- 
- nrutil.o:	nrutil.c nrutil.h
--	$(CC) -c nrutil.c -DANSI
-+	$(CC) $(CFLAGS) -c nrutil.c -DANSI
- 
- AquaFuncts.o:	AquaFuncts.c AquaFuncts.h AquaFuncts_cv.h AquaFuncts_io.h\
- 		AquaStrucset.h AquaFiles.h\
-@@ -319,7 +318,7 @@ $(LIB)/MenuFuncts.o:	$(LIB)/MenuFuncts.c $(LIB)/MenuTypes.h $(LIB)/MenuFuncts.h\
- 	cd $(LIB); $(CC) -c MenuFuncts.c $(CFLAGS)
- 
- cv_subs.o:	cv_subs.f
--	f77 -c cv_subs.f $(FFLAGS)
-+	$(FC) -c cv_subs.f $(FFLAGS)
- 
- Qext.o:		Qext.c Qext.h\
- 		$(LIB)/MenuFuncts.h $(LIB)/Functs.h $(G_HEADERS)
diff --git a/sci-chemistry/aqua/metadata.xml b/sci-chemistry/aqua/metadata.xml
deleted file mode 100644
index d4ff1000a775..000000000000
--- a/sci-chemistry/aqua/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-chemistry@gentoo.org</email>
-		<name>Gentoo Chemistry Project</name>
-	</maintainer>
-</pkgmetadata>