diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
---|---|---|
committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sci-chemistry/ccpn/files |
reinit the tree, so we can have metadata
Diffstat (limited to 'sci-chemistry/ccpn/files')
-rw-r--r-- | sci-chemistry/ccpn/files/2.3.1-parallel.patch | 38 | ||||
-rw-r--r-- | sci-chemistry/ccpn/files/analysis | 8 | ||||
-rw-r--r-- | sci-chemistry/ccpn/files/dangle | 8 | ||||
-rw-r--r-- | sci-chemistry/ccpn/files/dataShifter | 8 | ||||
-rw-r--r-- | sci-chemistry/ccpn/files/depositionFileImporter | 8 | ||||
-rw-r--r-- | sci-chemistry/ccpn/files/eci | 8 | ||||
-rw-r--r-- | sci-chemistry/ccpn/files/extendNmr | 8 | ||||
-rw-r--r-- | sci-chemistry/ccpn/files/formatConverter | 8 | ||||
-rw-r--r-- | sci-chemistry/ccpn/files/pipe2azara | 8 | ||||
-rw-r--r-- | sci-chemistry/ccpn/files/xeasy2azara | 8 |
10 files changed, 110 insertions, 0 deletions
diff --git a/sci-chemistry/ccpn/files/2.3.1-parallel.patch b/sci-chemistry/ccpn/files/2.3.1-parallel.patch new file mode 100644 index 000000000000..fcf44707e082 --- /dev/null +++ b/sci-chemistry/ccpn/files/2.3.1-parallel.patch @@ -0,0 +1,38 @@ +diff --git a/ccpnmr2.3/c/Makefile b/ccpnmr2.3/c/Makefile +index 01fb25a..8e8e1fe 100644 +--- a/ccpnmr2.3/c/Makefile ++++ b/ccpnmr2.3/c/Makefile +@@ -5,22 +5,22 @@ all: compile + compile: global structure analysis clouds dynamics bayes + + global: +- cd memops/global && $(MAKE) ++ $(MAKE) -C memops/global + +-structure: +- cd ccp/structure && $(MAKE) ++structure: global ++ $(MAKE) -C ccp/structure + +-analysis: +- cd ccpnmr/analysis && $(MAKE) ++analysis: global ++ $(MAKE) -C ccpnmr/analysis + +-clouds: +- cd ccpnmr/clouds && $(MAKE) ++clouds: global ++ $(MAKE) -C ccpnmr/clouds + +-dynamics: +- cd ccpnmr/dynamics && $(MAKE) ++dynamics: global ++ $(MAKE) -C ccpnmr/dynamics + +-bayes: +- cd other/cambridge/bayes && $(MAKE) ++bayes: global ++ $(MAKE) -C other/cambridge/bayes + + clean: global_clean structure_clean analysis_clean clouds_clean dynamics_clean bayes_clean + diff --git a/sci-chemistry/ccpn/files/analysis b/sci-chemistry/ccpn/files/analysis new file mode 100644 index 000000000000..828ed4e64ae9 --- /dev/null +++ b/sci-chemistry/ccpn/files/analysis @@ -0,0 +1,8 @@ +#!/bin/bash + +export CCPNMR_TOP_DIR=gentoo_sitedir +export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python +export TCL_LIBRARY=gentootcl +export TK_LIBRARY=gentootk +export PSIPRED_DIR=gentoousr +gentoopython -i -O ${CCPNMR_TOP_DIR}/ccpn/python/ccpnmr/analysis/AnalysisGui.py $1 $2 $3 $4 $5 $6 diff --git a/sci-chemistry/ccpn/files/dangle b/sci-chemistry/ccpn/files/dangle new file mode 100644 index 000000000000..6d8a42e615de --- /dev/null +++ b/sci-chemistry/ccpn/files/dangle @@ -0,0 +1,8 @@ +#!/bin/bash + +export CCPNMR_TOP_DIR=gentoo_sitedir +export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python +export TCL_LIBRARY=gentootcl +export TK_LIBRARY=gentootk +export PSIPRED_DIR=gentoousr +gentoopython -O ${CCPNMR_TOP_DIR}/ccpn/python/cambridge/dangle/DangleGui.py $1 $2 $3 $4 $5 $6 diff --git a/sci-chemistry/ccpn/files/dataShifter b/sci-chemistry/ccpn/files/dataShifter new file mode 100644 index 000000000000..c083960f2f60 --- /dev/null +++ b/sci-chemistry/ccpn/files/dataShifter @@ -0,0 +1,8 @@ +#!/bin/bash + +export CCPNMR_TOP_DIR=gentoo_sitedir +export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python +export TCL_LIBRARY=gentootcl +export TK_LIBRARY=gentootk +export PSIPRED_DIR=gentoousr +gentoopython -O ${CCPNMR_TOP_DIR}/ccpn/python/ccpnmr/format/gui/DataShifter.py $1 $2 $3 $4 $5 $6 diff --git a/sci-chemistry/ccpn/files/depositionFileImporter b/sci-chemistry/ccpn/files/depositionFileImporter new file mode 100644 index 000000000000..09505ccc4925 --- /dev/null +++ b/sci-chemistry/ccpn/files/depositionFileImporter @@ -0,0 +1,8 @@ +#!/bin/bash + +export CCPNMR_TOP_DIR=gentoo_sitedir +export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python +export TCL_LIBRARY=gentootcl +export TK_LIBRARY=gentootk +export PSIPRED_DIR=gentoousr +gentoopython -O ${CCPNMR_TOP_DIR}/ccpn/python/pdbe/deposition/dataFileImport/dataFileImportGui.py $@ diff --git a/sci-chemistry/ccpn/files/eci b/sci-chemistry/ccpn/files/eci new file mode 100644 index 000000000000..54d913348718 --- /dev/null +++ b/sci-chemistry/ccpn/files/eci @@ -0,0 +1,8 @@ +#!/bin/bash + +export CCPNMR_TOP_DIR=gentoo_sitedir +export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python +export TCL_LIBRARY=gentootcl +export TK_LIBRARY=gentootk +export PSIPRED_DIR=gentoousr +gentoopython -O ${CCPNMR_TOP_DIR}/ccpn/python/ccpnmr/eci/EntryCompletionGui.py $* diff --git a/sci-chemistry/ccpn/files/extendNmr b/sci-chemistry/ccpn/files/extendNmr new file mode 100644 index 000000000000..a2fe4c997c7c --- /dev/null +++ b/sci-chemistry/ccpn/files/extendNmr @@ -0,0 +1,8 @@ +#!/bin/bash + +export CCPNMR_TOP_DIR=gentoo_sitedir +export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python +export TCL_LIBRARY=gentootcl +export TK_LIBRARY=gentootk +export PSIPRED_DIR=gentoousr +gentoopython -O -i -O ${CCPNMR_TOP_DIR}/ccpn/python/extendNmr/ExtendNmrGui.py $@ diff --git a/sci-chemistry/ccpn/files/formatConverter b/sci-chemistry/ccpn/files/formatConverter new file mode 100644 index 000000000000..6cb273612352 --- /dev/null +++ b/sci-chemistry/ccpn/files/formatConverter @@ -0,0 +1,8 @@ +#!/bin/bash + +export CCPNMR_TOP_DIR=gentoo_sitedir +export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python +export TCL_LIBRARY=gentootcl +export TK_LIBRARY=gentootk +export PSIPRED_DIR=gentoousr +gentoopython -O ${CCPNMR_TOP_DIR}/ccpn/python/ccpnmr/format/gui/FormatConverter.py $1 $2 $3 $4 $5 $6 diff --git a/sci-chemistry/ccpn/files/pipe2azara b/sci-chemistry/ccpn/files/pipe2azara new file mode 100644 index 000000000000..5a3710a134a7 --- /dev/null +++ b/sci-chemistry/ccpn/files/pipe2azara @@ -0,0 +1,8 @@ +#!/bin/bash + +export CCPNMR_TOP_DIR=gentoo_sitedir +export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python +export TCL_LIBRARY=gentootcl +export TK_LIBRARY=gentootk +export PSIPRED_DIR=gentoousr +gentoopython -O ${CCPNMR_TOP_DIR}/ccpn/python/ccp/format/spectra/params/NmrPipeData.py $1 $2 $3 $4 $5 $6 diff --git a/sci-chemistry/ccpn/files/xeasy2azara b/sci-chemistry/ccpn/files/xeasy2azara new file mode 100644 index 000000000000..7b73714c2fa5 --- /dev/null +++ b/sci-chemistry/ccpn/files/xeasy2azara @@ -0,0 +1,8 @@ +#!/bin/bash + +export CCPNMR_TOP_DIR=gentoo_sitedir +export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python +export TCL_LIBRARY=gentootcl +export TK_LIBRARY=gentootk +export PSIPRED_DIR=gentoousr +gentoopython -O ${CCPNMR_TOP_DIR}/ccpn/python/ccp/format/spectra/params/XeasyData.py $1 $2 $3 $4 $5 $6 |