gentoo auto-resync : 20:10:2023 - 15:52:41

3 files changed, 15 insertions, 1 deletions

diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 665e1b5dee73..d4c862325462 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -1,5 +1,6 @@
 AUX gromacs-2019.6-missing-include.patch 1052 BLAKE2B 01d7e592caa1e975a1fcea99bc37dd61ea7c039ed32243852f532c87d08911f9e83d0752d3a09e46643ca433339fe7c8d510c09e4af1070060735f9ee8a151d0 SHA512 8ed2e1de98cd35d87c0a0ea6867a99d4c1b33940040506feac09da929389afd1e19f34691c9032b1f59b156986b56c49aed1d0c8f8e7e64ad7a78e6dfd521912
 AUX gromacs-2020-pytest.patch 1346 BLAKE2B 4b0b34bf4f46ec1acc3d0088ac11323938ee44b700beecc32b083885727d31904649798e38b824a6cf04ea7f9129dbd40e66bdde6e5a88fa4734db51bdf4cc46 SHA512 2c05e243b0e7bb8f9d25051d7bc86463dffa722502586799f0a8ce53bebd24fd0e367b6840365ac4ebc30595ffb8bbccb10a88d0c81148ae198941966cebddb0
+AUX gromacs-2021-cstdint-include.patch 361 BLAKE2B 98c09c5c82d722fc2fcc320741d8f8ed4f661eed7acd66e72ff1423aa2f0eac316add28f5b2b8b65a3b82c160d36aef6948078d3bad3248ffbd7bd63211980d1 SHA512 decf900c565ad9afed33e9a257a2364b63f0f872a5521dc6de4bdf6c7335e15b1cadaf06041f963573c116f1ffcf289a73d0b482df86740ff0874e0ee598825f
 AUX gromacs-2021-cuda-detection.patch 21849 BLAKE2B 4976321e5f2c5bc9b45feeaa29206d77d04d6148ca910652bd3f7923b6e74b7b10f039b5bcc4430826745f6d64b232c536a8ef75cce61556275942e94945acc0 SHA512 6a1d1f0467d27267d214bc4df95c4b15438fffcae6b84e03763425f869e2551490c0f5e2d28774f9dda2daa07da8b5555617721d46e8b4f067eba2b2b86b353d
 AUX gromacs-2021-musl-stdint.patch 601 BLAKE2B 2e871d22655950ee9b9951229e78bc022f74ce7a8aa8063bafa30e0fd97cd0451e0621ab48f985d813fd5d890c0f2d0c9ced6d4b26d86e9d1f6774c084f169af SHA512 d36497423beb86a26ad011432dd6da7169ae42dc00d15bc90ba14de6ecf5eb3217ac987260dce479e5f92d5f3a40fa28c5eb1b51816a92b6a37745f674581280
 DIST gromacs-2018.8.tar.gz 29913703 BLAKE2B 8780032305928067fbfe1559efe9eedc4d47e27ab2f6ab54d6dba39edfcbeefbee4673d8910009048a850620b5a08ba8feb622db652c439cfa50a149ec5f0015 SHA512 6717895942f2ab7b54019511ed2aebadadde8e96d3c4b7414bb9168ffe418432d2dee330192e199f7b9d2f665c71f5d4f1ef0911aa7243d525a2ca182ef5b122
@@ -33,7 +34,7 @@ EBUILD gromacs-2018.8-r2.ebuild 6678 BLAKE2B 02eaf7b1141c3942990493ea43d1e07700b
 EBUILD gromacs-2019.6-r3.ebuild 7056 BLAKE2B 3a2b43e4a0152c5f081d5cb675971c5bb86d59c8ec0432bcfb9143fcdb35ef807553c6aa60c376307aa2a285379da8a7ac6378e47f8682d08252680ffee68164 SHA512 2521b048d84392b972a0247fa586256da1b827838cd954ee2672d8da55c0dc0b57cedb9bac7704ae0594e304433b5a0c2568b49a0fe272d23ff1c03aee16b3e0
 EBUILD gromacs-2020.7-r1.ebuild 9850 BLAKE2B 1bdc5d13bcfa5624e4069469a9f8e4d02652b4d64f54215d70e62651aafc06e0a3edfb73b3ed6568025e23670411e81b46c0ee773b641f9e0e82031ac41f14d4 SHA512 f88deaf0117b3de34a00935df82caa6996b8be4af995dd4747a4eb363ea806aedd59187888480c71a01a178e8b6d83228a86db828116e3ab2435af0d2ae4942c
 EBUILD gromacs-2021.6.ebuild 10055 BLAKE2B 30bf21addedf543188153211a8b89204bd86b18d7a3fda1d30bba80db5049e45d1113110eafd0ed5ee899481385d890b69dbe8c0b3ce3f7f75a1740b334c6960 SHA512 b171081fabae29c44e7827c36dcda8a4b787dd6a335c3ee31ad6c2a811fac05331381213b3a978daf28d62dd96bb930c5d1bb05182b2b537ad8bd56c2acc4d35
-EBUILD gromacs-2021.7-r1.ebuild 10106 BLAKE2B ee30c3428b48bf3a5ade852faddff95f2ca74bd6dd3cc1554466c05660dd0920d2169ec699e6a9c28293a0b962f9d2a176986e23c93ae4df18361450b055e876 SHA512 577c291d7f0d47ca77509cde1a7e25573214748adc0f32b121dc310a88c4e0388b70a7badf4e6a64565f2881c9721ba7caf8afc16cfc59b61dd32b417de2a74e
+EBUILD gromacs-2021.7-r1.ebuild 10154 BLAKE2B 254bc7d02cd28b695b74423cb5c97affa0b235121c31df79e943f027d4812e4f6a355e4f672cf78d97224fdfd04db5819fda1159c2eaf5ffb40163a637d054bc SHA512 9487cc4a9a79080deadcdeb0e3383b33177e979f49db407ee68e6c20d1d078aa03d28d463bf4e361f02b51c3718a43c81c20fe08741c9dc7ab2fcc3ded2c37d0
 EBUILD gromacs-2022.5-r1.ebuild 9598 BLAKE2B 934002e01c79ff4e9bf06ce3ceb397fbc5fbca2803d8a1efc4896678d631294a34cb0dd4d468b316c1d293084c052240aaa5569e4eaaab497eec3b8e70e70569 SHA512 001c68fd73dee20a2813252ba8ef397da2fa1f6b7a4c4983d8317496641a91e06a2bea065c74067bda7a57ed40a984671373c2a608369bd86aac28cfc0b3fddb
 EBUILD gromacs-2022.6.ebuild 9598 BLAKE2B 934002e01c79ff4e9bf06ce3ceb397fbc5fbca2803d8a1efc4896678d631294a34cb0dd4d468b316c1d293084c052240aaa5569e4eaaab497eec3b8e70e70569 SHA512 001c68fd73dee20a2813252ba8ef397da2fa1f6b7a4c4983d8317496641a91e06a2bea065c74067bda7a57ed40a984671373c2a608369bd86aac28cfc0b3fddb
 EBUILD gromacs-2022.9999.ebuild 9598 BLAKE2B 934002e01c79ff4e9bf06ce3ceb397fbc5fbca2803d8a1efc4896678d631294a34cb0dd4d468b316c1d293084c052240aaa5569e4eaaab497eec3b8e70e70569 SHA512 001c68fd73dee20a2813252ba8ef397da2fa1f6b7a4c4983d8317496641a91e06a2bea065c74067bda7a57ed40a984671373c2a608369bd86aac28cfc0b3fddb
diff --git a/sci-chemistry/gromacs/files/gromacs-2021-cstdint-include.patch b/sci-chemistry/gromacs/files/gromacs-2021-cstdint-include.patch
new file mode 100644
index 000000000000..5952aa3dd8e8
--- /dev/null
+++ b/sci-chemistry/gromacs/files/gromacs-2021-cstdint-include.patch
@@ -0,0 +1,12 @@
+# https://bugs.gentoo.org/915694
+# Not needed for newer branches, that greatly refactored the code
+--- a/src/gromacs/utility/flags.h~	2023-01-31 12:45:46.000000000 +0100
++++ b/src/gromacs/utility/flags.h	2023-10-16 10:15:24.087340444 +0200
+@@ -42,7 +42,7 @@
+  */
+ #ifndef GMX_UTILITY_FLAGS_H
+ #define GMX_UTILITY_FLAGS_H
+-
++#include <cstdint>
+ namespace gmx
+ {
diff --git a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
index f209fdeadb3e..ba32eebe7d85 100644
--- a/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2021.7-r1.ebuild
@@ -88,6 +88,7 @@ RESTRICT="!test? ( test )"
 PATCHES=(
 	"${FILESDIR}/${PN}-2021-musl-stdint.patch"
 	"${FILESDIR}/${PN}-2021-cuda-detection.patch"
+	"${FILESDIR}/${PN}-2021-cstdint-include.patch"
 )
 
 if [[ ${PV} != *9999 ]]; then