reinit the tree, so we can have metadata

1 files changed, 16 insertions, 0 deletions

diff --git a/sci-chemistry/mustang/files/mustang-3.2.1-gcc-4.7.patch b/sci-chemistry/mustang/files/mustang-3.2.1-gcc-4.7.patch
new file mode 100644
index 000000000000..9e5dea85afeb
--- /dev/null
+++ b/sci-chemistry/mustang/files/mustang-3.2.1-gcc-4.7.patch
@@ -0,0 +1,16 @@
+ src/superpose_on_core_2.cpp |    2 ++
+ 1 files changed, 2 insertions(+), 0 deletions(-)
+
+diff --git a/src/superpose_on_core_2.cpp b/src/superpose_on_core_2.cpp
+index ae137de..059dfe3 100644
+--- a/src/superpose_on_core_2.cpp
++++ b/src/superpose_on_core_2.cpp
+@@ -55,6 +55,8 @@ using std::ofstream ;
+ #include "multiple_superposition.h"
+ #include "3D_manip_functions.h"
+ 
++#include <unistd.h>
++
+ int **core_columns ;
+ int *core_columns_2 , NCORE = 0 ;
+ int **algn_to_seq_hash ;