gentoo auto-resync : 20:07:2024 - 12:29:37

5 files changed, 0 insertions, 186 deletions

diff --git a/sci-chemistry/procheck/Manifest b/sci-chemistry/procheck/Manifest
deleted file mode 100644
index 176af33f9d5a..000000000000
--- a/sci-chemistry/procheck/Manifest
+++ /dev/null
@@ -1,7 +0,0 @@
-AUX procheck-3.5.4-close.patch 1073 BLAKE2B 54e9857e3d3ee920becebfc50da34145384046be019a2fcd01d47afc4f9242a5311aac166dcde7dc79de584c2ea08bd8e766ae58310700bff45f6bb1a2829abf SHA512 3d18df23858acc46a12f884d4904ca3f60e05e663746e768f5f08d0370b2e335cfde09c08566c4869adfa0f9c0d75ae527fe0ed2666f603818b11f91a3349307
-AUX procheck-3.5.4-ldflags.patch 1649 BLAKE2B 64506db2dbe1eba43dfc07bca233d573646ac553862e8d6eecce7970362047cfd8fdcd18f7c83bb74a0476fde78222ea92e0c2a56b24fba2d71d9c97c563fbb1 SHA512 f7f2e06a77058f7e743a1c1367d40c2683a2aefbf2910a807d1b0a77d19024446f978ec34a8e5187338a7e98b6651592a37c024e8a2ea955d9bd736d47bfeb4f
-DIST procheck-3.5.4-README 6585 BLAKE2B c61606848f30728b67d2ab51e0beadec1c30aaa0ca65a68834bff3ed3e3f466e34a0e4b64323e80cce9cee83854650ebe0805abf0509c0a9154bf08e3e0a2d6b SHA512 c6eff94cef9b67fd61884e88fa77ec381553d4dba53f477023738e1e44a6191c4241b14543ee7ecb93b049f16f262db2a09cf5d1a63248057633aab290f1f82a
-DIST procheck-3.5.4-manual.tar.gz 517840 BLAKE2B 33c5da5888bcd263e900cf2839f9287373e032fdde234e0375af061ec1c588d1ea5d2718da2a050da8060ba4003748a8fef3ff35b22f424c1cf6a1892aec0fe6 SHA512 0fa9c7d50b7ca43c626d5261c524166938d3a92be1d02221721bc7ce7e91ac4919e7200b946ce563f9bb696d7dab9588c1d1b31a4d551cafa2f2bce4931a212c
-DIST procheck-3.5.4.tar.gz 522013 BLAKE2B be6764bc741ec3f868aee349fc7e23608c612758029d0b745c421f40b47c896dd48de84ee7df6d09a64a20695bd5a1ed0a96464e6dcaf44de03da1ae231787f8 SHA512 1dd78b53070484fbcdca51001fd147ab13fd5e51b3d1da54fd529531917c31012393751ee514f0c79d579b17a1701dde04f81b1c9ac27b2b835a43fa96785ecc
-EBUILD procheck-3.5.4-r3.ebuild 1717 BLAKE2B 1919325faefdc9cad032d503166cdedc966f44c949bf1c2c34d3aa7b0132fdbb35a3a7e0f446a967166cbce66596143e114cea7b0c23aa9ca0c99acd9c29ec4a SHA512 04c58e977937275fd413ff217d97f7fa0dfacca2492c57b60d8f2d671565e640852c391e8c408618ed3e9da53f602f96c2863a009d8798011365a9b9f1fa93ec
-MISC metadata.xml 272 BLAKE2B 531e98b72776bbe9126811b70943add0f6f43141b01cb75b17ac2c8d1cfb6a9b349022fd411894d2b8eeb0612a73db10aed4ba71f9624bd6dbd172a05fca2c76 SHA512 04f5575703aaaa95e575460ae3de428d3da173b3b741ab52b4aad31e381fef78b325f49f99622ec26a65024437759ea013fc525bd63ee553003c71afcc40d10c
diff --git a/sci-chemistry/procheck/files/procheck-3.5.4-close.patch b/sci-chemistry/procheck/files/procheck-3.5.4-close.patch
deleted file mode 100644
index 16a0658e654d..000000000000
--- a/sci-chemistry/procheck/files/procheck-3.5.4-close.patch
+++ /dev/null
@@ -1,35 +0,0 @@
-diff --git a/pplot.f b/pplot.f
-index 7e06e68..c86b2b2 100644
---- a/pplot.f
-+++ b/pplot.f
-@@ -4720,6 +4720,7 @@ C---- Initialise variables
-           SCORE(IDIST) = 0.0
-  50   CONTINUE
- 
-+      REWIND(3)
- C---- If the required residue is of a greater number than that required,
- C     read through the file until come to it
-       IF (IRESID.GT.INRES) THEN
-diff --git a/ps.f b/ps.f
-index b652a7d..858b8e5 100644
---- a/ps.f
-+++ b/ps.f
-@@ -1705,12 +1705,14 @@ CVAX     -    CARRIAGECONTROL='LIST',
- C---- If this is an existing file, then read through all its records until
- C     get to the end of file
-       IF (.NOT.NEWFIL) THEN
-+          CLOSE(14)
-+          OPEN(14, file=fname, status='old', position='append', err=900)
- 
- C----     Loop through the file until reach the end
-- 100      CONTINUE
--             READ(14,110,END=500) IREC
-- 110         FORMAT(A)
--          GO TO 100
-+C 100      CONTINUE
-+C             READ(14,110,END=500) IREC
-+C 110         FORMAT(A)
-+C          GO TO 100
- 
- C---- If this is a new file, then write the header records to it
-       ELSE
\ No newline at end of file
diff --git a/sci-chemistry/procheck/files/procheck-3.5.4-ldflags.patch b/sci-chemistry/procheck/files/procheck-3.5.4-ldflags.patch
deleted file mode 100644
index 453aebe3211f..000000000000
--- a/sci-chemistry/procheck/files/procheck-3.5.4-ldflags.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-diff --git a/Makefile b/Makefile
-index c5bb58f..0394b0a 100644
---- a/Makefile
-+++ b/Makefile
-@@ -35,31 +35,31 @@ distrib :
- # Individual executables
- # ----------------------
- anglen : anglen.o
--	$(F77) $(FOPTS) -o $@ anglen.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ anglen.o
- clean : clean.o
--	$(F77) $(FOPTS) -o $@ clean.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ clean.o
- rmsdev : rmsdev.o
--	$(F77) $(FOPTS) -o $@ rmsdev.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ rmsdev.o
- secstr : secstr.o
--	$(F77) $(FOPTS) -o $@ secstr.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ secstr.o
- gfac2pdb : gfac2pdb.o ps.o
--	$(F77) $(FOPTS) -o $@ gfac2pdb.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ gfac2pdb.o ps.o
- pplot : pplot.o ps.o
--	$(F77) $(FOPTS) -o $@ pplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ pplot.o ps.o
- bplot : bplot.o ps.o
--	$(F77) $(FOPTS) -o $@ bplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ bplot.o ps.o
- tplot : tplot.o ps.o
--	$(F77) $(FOPTS) -o $@ tplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ tplot.o ps.o
- mplot : mplot.o ps.o
--	$(F77) $(FOPTS) -o $@ mplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ mplot.o ps.o
- vplot : vplot.o ps.o
--	$(F77) $(FOPTS) -o $@ vplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ vplot.o ps.o
- viol2pdb : viol2pdb.o ps.o
--	$(F77) $(FOPTS) -o $@ viol2pdb.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ viol2pdb.o ps.o
- wirplot : wirplot.o ps.o
--	$(F77) $(FOPTS) -o $@ wirplot.o ps.o
-+	$(F77) $(FOPTS) $(LDFLAGS) -o $@ wirplot.o ps.o
- nb : nb.c
--	$(CC) $(COPTS) -o nb nb.c $(CLIBS)
-+	$(CC) $(COPTS) $(LDFLAGS) -o nb nb.c $(CLIBS)
- 
- # Individual rules for FORTRAN files with .inc files
- # --------------------------------------------------
diff --git a/sci-chemistry/procheck/metadata.xml b/sci-chemistry/procheck/metadata.xml
deleted file mode 100644
index e490bcb8aa87..000000000000
--- a/sci-chemistry/procheck/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-chemistry@gentoo.org</email>
-    <name>Gentoo Chemistry Project</name>
-  </maintainer>
-</pkgmetadata>
diff --git a/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild b/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild
deleted file mode 100644
index 3db0e3f24244..000000000000
--- a/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild
+++ /dev/null
@@ -1,87 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit fortran-2 multilib toolchain-funcs versionator
-
-DESCRIPTION="Checks the stereochemical quality of a protein structure"
-HOMEPAGE="https://www.ebi.ac.uk/thornton-srv/software/PROCHECK"
-SRC_URI="
-	${P}.tar.gz ${P}-README
-	doc? ( ${P}-manual.tar.gz )"
-
-LICENSE="procheck"
-SLOT="0"
-KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc"
-
-RDEPEND="app-shells/tcsh"
-DEPEND="${RDEPEND}"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${PN}"
-
-pkg_nofetch() {
-	elog "Please visit https://www.ebi.ac.uk/thornton-srv/software/PROCHECK/download.html"
-	elog "and follow the instruction for downloading."
-	elog "Files should be renamed in the following way before being copied to your"
-	elog "DISTDIR directory:"
-	elog "  ${PN}.tar.gz  ->  ${P}.tar.gz"
-	elog "  README  ->  ${P}-README"
-	use doc && elog "  manual.tar.gz  ->  ${P}-manual.tar.gz"
-}
-
-PATCHES=(
-		"${FILESDIR}"/${P}-ldflags.patch
-		"${FILESDIR}"/${P}-close.patch
-)
-
-src_compile() {
-	emake \
-		F77="$(tc-getFC)" \
-		CC="$(tc-getCC)" \
-		COPTS="${CFLAGS}" \
-		FOPTS="${FFLAGS} -std=legacy"
-}
-
-src_install() {
-	for i in *.scr; do
-		newbin ${i} ${i%.scr}
-	done
-
-	exeinto /usr/libexec/${PN}/
-	doexe \
-		anglen \
-		clean \
-		rmsdev \
-		secstr \
-		gfac2pdb \
-		pplot \
-		bplot \
-		tplot \
-		mplot \
-		vplot \
-		viol2pdb \
-		wirplot \
-		nb
-	dodoc "${DISTDIR}"/${P}-README
-
-	insinto /usr/libexec/${PN}/
-	doins *.dat *.prm
-	newins resdefs.dat resdefs.data
-
-	cat >> "${T}"/30${PN} <<- EOF
-	prodir="${EPREFIX}/usr/libexec/${PN}/"
-	EOF
-
-	doenvd "${T}"/30${PN}
-
-	if use doc; then
-		pushd "${WORKDIR}" > /dev/null
-			docinto html
-			dodoc -r manual
-		popd > /dev/null
-	fi
-}