reinit the tree, so we can have metadata

3 files changed, 58 insertions, 0 deletions

diff --git a/sci-chemistry/prody/Manifest b/sci-chemistry/prody/Manifest
new file mode 100644
index 000000000000..c4ab436b4602
--- /dev/null
+++ b/sci-chemistry/prody/Manifest
@@ -0,0 +1,4 @@
+DIST prody-1.6.tar.gz 5333629 SHA256 db5f2223005640e64b5bfd5ef147744381b9b170ced61db7bc8f3a0fdb583c86 SHA512 d913ad45b034f1b0e7e36428a6f8f199b365b94bd85bee5ade8eb9eb2b04a18c93d894a2abd18b3a1342597725ffbf96f8ce8a49191fc27e5608f3d2c9a3c49a WHIRLPOOL a6435d88046970cca53290b258017d09b19457c4bbd5530743a3dc9cbc023ee78a28a4df81b190a5499df114d9909afff0697e571ef5bc4726311f4ea287c4be
+EBUILD prody-1.6.ebuild 989 SHA256 cf6f8c50d9ae71194d66891d4a694feb913e03f6ffc30b89e30b3230c402e6dd SHA512 c7d56510fcdf606616fde3b0e7199237c3114e053d3ccb03851db34b56cfbac7077e6c714b5a758942be5a29f6e2e92a0fc2945e29382234f439e8225b559cc1 WHIRLPOOL d053e9bf44605192a582f1948a50f0964d62b12eb7b0a7e81c781b323dea7f14da9af254986ff29d8e76b416ceb7686b11fcf4b50fdb9e592a8ac0cecc7b9e6e
+MISC ChangeLog 1413 SHA256 9c31f64932108ff256b7e84eb1026ce250e42f789f0e8016421b9ea7e3e0619b SHA512 5cec8c96399f4a966b040da71f18cb19e45391de3a8f822514883e362320e7ff6b5578a074f314346f0a1cbf322cbae73198b02bc65ea6eaae419c6c6aef40d0 WHIRLPOOL 2fc31e43b170a21457e446245dc088332700249848480d23e4481a29fc60c80a47350d9b645828c7a11c64cf2f1465c9ef9a1068aecc682a5bb5d111cac36d69
+MISC metadata.xml 351 SHA256 478c1e6dcab22d397cb9f6551a1d2c979e7e3d7daa344ba368a7d10bf386a02e SHA512 7e6be0c59b593d2de0f9e0237a039624a136b791c28afddad157c878a3d7efdf02637bb0e6b862957a057f3ab7aaf3db113eed6208e1491e4950795547ea4b2c WHIRLPOOL a05d743b0b1b5964093b1ef86ec3740382ea3027f8aa943631ed2b4386281bdd3e827e41e964f341afe355b1434f2c922049885dbe9e780ba17253df6d2262aa
diff --git a/sci-chemistry/prody/metadata.xml b/sci-chemistry/prody/metadata.xml
new file mode 100644
index 000000000000..d798ea1d6cdf
--- /dev/null
+++ b/sci-chemistry/prody/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-chemistry@gentoo.org</email>
+    <name>Gentoo Chemistry Project</name>
+  </maintainer>
+  <upstream>
+    <remote-id type="github">prody/ProDy</remote-id>
+  </upstream>
+</pkgmetadata>
diff --git a/sci-chemistry/prody/prody-1.6.ebuild b/sci-chemistry/prody/prody-1.6.ebuild
new file mode 100644
index 000000000000..abab32d7927e
--- /dev/null
+++ b/sci-chemistry/prody/prody-1.6.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Protein Dynamics Analysis"
+HOMEPAGE="http://prody.csb.pitt.edu/ https://github.com/prody/ProDy"
+SRC_URI="https://github.com/prody/ProDy/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+SLOT="0"
+LICENSE="MIT"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="test"
+
+RDEPEND="
+	dev-python/ipython[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.7[${PYTHON_USEDEP}]
+	dev-python/pyparsing[${PYTHON_USEDEP}]
+	sci-biology/biopython[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}
+	test? ( dev-python/nose[${PYTHON_USEDEP}] )"
+
+S="${WORKDIR}"/ProDy-${PV}
+
+DISTUTILS_IN_SOURCE_BUILD=true
+
+python_prepare_all() {
+	emake remove
+	distutils-r1_python_prepare_all
+}
+
+python_test() {
+	cd "${BUILD_DIR}" || die
+	PATH="${S}"/scripts:${PATH} \
+		nosetests --verbose || die
+}