gentoo resync : 15.06.2021

7 files changed, 0 insertions, 286 deletions

diff --git a/sci-chemistry/rasmol/Manifest b/sci-chemistry/rasmol/Manifest
deleted file mode 100644
index 1578aefbece1..000000000000
--- a/sci-chemistry/rasmol/Manifest
+++ /dev/null
@@ -1,7 +0,0 @@
-AUX 2.7.5-bundled-lib.patch 2513 BLAKE2B d913fb8572abb58ffcb6a48f2f855432e33ef74168b6461d3b2d18bba9c0fedb33a975a5d754ac9ffc56644d9256bf428694afbf0b3a078421ab372c6c84570d SHA512 940e85bbe35ed6055d8deb1d761e925aec3b60d63c3e91bcc3c08596f1b8269efd4c8a257ff9efdbe32888e987852e85ed19cba5566d8d610e8d625a23b0994a
-AUX rasmol-2.7.5.2-format-security.patch 1617 BLAKE2B d9a083ae6c72724359274da5b61683b615ca1daf8e0dd8763e999ee7cfbe7ec23cdefffd4d5fda94c9d5366c812f51fef663578d9c39805b6a6eaa8f9e3c569a SHA512 cab29465d5830e669eca152880ae60c403f90668ee5bf97e3694b6e754e2e23086a520717c2df990c74fcfbafc761a460bea111d868a57ae63f13bce1603f074
-AUX rasmol-2.7.5.2-glib.h.patch 770 BLAKE2B 1c83587711540a9e2b91b53ffd0836cde27f040c593b7d771eb185edf8e72b50f09d1c38ef0b2510effee95649bbaf3adf7d0340f49a38381bd15200fd94e749 SHA512 d743b89817d0ed2aa551f3a6529e5bcc50c811d79c0deddd50d07a59614cb0c2d71500452ff9aec4b4b84e4985d9851f61aafa30196356aa1724212b5159375e
-AUX rasmol-2.7.5.2-longlong.patch 396 BLAKE2B 68ce4bff3584bbc6331ad5e27171d23e443be2d24b60bbd45dd02d4f04b5531cfd7fdb18904471c85ef107875fb23574f6b3212b78706746cc73c39d09cda801 SHA512 4c3ce01ade36fe8a9512bdac62bcd47268bcc5a0448f4af69b26d8add9cc8495d376bac33a8ae5aeae42fa114a1cba980ce86559bf2d52334257f2e001c011d3
-DIST rasmol-2.7.5.2-13May11.tar.gz 9768769 BLAKE2B dcc9bfe9381ebab6bbf5a12e233490f076ead2388a22e3186421e3489bedde987813b1f65ce7b17ef168389c33d03bd7d4a8162635c0a79b3dc704eade23715d SHA512 c4fd149c002a34d8ce7620a7eed37aa6020acd83fc352a4c16697eb94e6a0377c55455cb6da5fb3f492f879248a6707f677f4b35572f2295b23fc924ddf3128f
-EBUILD rasmol-2.7.5.2-r2.ebuild 2335 BLAKE2B 3eb46ccf0799da8a5514e963193593ee4319cda48f474c616bb09191e59163c49d922f1c865b43fc5e49abc4e146c0725a66a95527e8ae55aff79368d9ee3ebc SHA512 c67480fea952676dbaee686ca6e6a5c4a7b0750b72ab45247f469c8643ec8a4a46b5d60c89aab531c84666560a3414fc0ccd176dab0ea17094cc7c7db3ff9bc8
-MISC metadata.xml 355 BLAKE2B 71f9b1537eea00556419ae1c9920458d86992e3c0b01083d55ca02f162c420f82e8f52ee8af224573912e2b988497901702962ed3b54342991f22e1eec37ce2e SHA512 98822367149551ef6af6d75e4bd0b9104f1a625a5a17e1a2dad32e7ed83345870dc45392525cfe7e49514eae29f986e8ac2ed253ec22fec94d6152f96620b916
diff --git a/sci-chemistry/rasmol/files/2.7.5-bundled-lib.patch b/sci-chemistry/rasmol/files/2.7.5-bundled-lib.patch
deleted file mode 100644
index 10705165ad47..000000000000
--- a/sci-chemistry/rasmol/files/2.7.5-bundled-lib.patch
+++ /dev/null
@@ -1,80 +0,0 @@
-diff --git a/src/Imakefile b/src/Imakefile
-index 03be00e..a0c68f9 100755
---- a/src/Imakefile
-+++ b/src/Imakefile
-@@ -176,7 +176,7 @@ XFORMSLIB_DIR = /usr/local
- #endif
- endif
- XFORMSLIB_INCLUDE_DIR = $(XFORMSLIB_DIR)/include
--XFORMSLIB_LDLIB = -lXpm -L$(XFORMSLIB_DIR)/lib -lforms
-+XFORMSLIB_LDLIB = -lXpm -L$(XFORMSLIB_DIR)/lib
- #endif
- #endif
- #endif
-@@ -281,17 +281,10 @@ RASMOLDIR = $(USRLIBDIR)/rasmol/
- 
- #ifndef USE_XFORMSLIB
- DEFINES = $(GTKCFLAGS) $(GUIDEF) -DRASMOLDIR=\"$(RASMOLDIR)\" $(DEPTHDEF) $(LOCALEDEF) \
--          -D_USE_RASMOL_H_ $(GUIOPTION) -I$(CBFLIB_INCLUDE_DIR) \
--          -I$(CQRLIB_INCLUDE_DIR) \
--          -I$(CVECTOR_INCLUDE_DIR) \
--          -I$(NEARTREE_INCLUDE_DIR)
-+          -D_USE_RASMOL_H_ $(GUIOPTION) -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib
- #else
- DEFINES = $(GTKCFLAGS) $(GUIDEF) -DRASMOLDIR=\"$(RASMOLDIR)\" $(DEPTHDEF) $(LOCALEDEF) \
--	-D_USE_RASMOL_H_ $(GUIOPTION) -I$(CBFLIB_INCLUDE_DIR) \
--	-I$(CQRLIB_INCLUDE_DIR) \
--	-I$(CVECTOR_INCLUDE_DIR) \
--	-I$(NEARTREE_INCLUDE_DIR) \
--  	-I$(XFORMSLIB_INCLUDE_DIR)
-+	-D_USE_RASMOL_H_ $(GUIOPTION) -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib
- #endif
- 
- 
-@@ -317,11 +310,11 @@ OBJS = rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o \
- # Additional RS6000 AIX MITSHM Library
- # LDLIBS = -lm -lXi -lXextSam $(XLIB)
- 
--LDLIBS = -lm -lXi $(XLIB) $(EXTRA_LIBRARIES) $(XFORMSLIB) $(GTKLIBS) \
--			$(CBFLIB_LDLIB) \
--			$(CQRLIB_LDLIB) \
--			$(CVECTOR_LDLIB) \
--			$(NEARTREE_LDLIB) $(XFORMSLIB_LDLIB)
-+LDLIBS = -lm -lXi $(XLIB) $(EXTRA_LIBRARIES) $(GTKLIBS) \
-+			-lcbf \
-+			-lCQRlib \
-+			-lCVector \
-+			-lCNearTree -lgfortran
- 
- 
- #
-@@ -425,11 +418,11 @@ $(NEARTREE_DIR):
- $(NEARTREE_DIR)/CNearTree.c: $(NEARTREE_DIR)
- #endif		  
- 
--$(OBJS):  $(EXTPKGDIR) $(CBFLIB_OBJDEP) \
--			$(CQRLIB_OBJDEP) \
--			$(CVECTOR_OBJDEP) \
--			$(NEARTREE_OBJDEP) \
--			$(XFORMSLIB_OBJDEP)
-+# $(OBJS):  $(EXTPKGDIR) $(CBFLIB_OBJDEP) \
-+#			$(CQRLIB_OBJDEP) \
-+#			$(CVECTOR_OBJDEP) \
-+#			$(NEARTREE_OBJDEP) \
-+#			$(XFORMSLIB_OBJDEP)
- 
- 
- gtkwin.c: gtkui.h
-diff --git a/src/Makefile.in b/src/Makefile.in
-index fc6d0af..bad90fc 100755
---- a/src/Makefile.in
-+++ b/src/Makefile.in
-@@ -165,7 +165,7 @@ $(CBFLIBDIR)/lib/libcbf.a: $(CBFLIBDIR)
- 
- all:		postdownload rasmol rastxt
- 
--rasmol:		postdownload $(X11OBJS) $(CBFLIBDIR)/lib/libcbf.a
-+rasmol:		postdownload $(X11OBJS) 
- 		$(CC) -o rasmol $(LFLAGS) $(X11OBJS) $(X11LIBS)
- 		chmod 755 rasmol
- 
diff --git a/sci-chemistry/rasmol/files/rasmol-2.7.5.2-format-security.patch b/sci-chemistry/rasmol/files/rasmol-2.7.5.2-format-security.patch
deleted file mode 100644
index 22eb229d8a3d..000000000000
--- a/sci-chemistry/rasmol/files/rasmol-2.7.5.2-format-security.patch
+++ /dev/null
@@ -1,39 +0,0 @@
-diff -urp RasMol-2.7.5.2/src/command.c RasMol-2.7.5.2_sprintf/src/command.c
---- RasMol-2.7.5.2/src/command.c	2011-05-15 01:23:49.000000000 +0700
-+++ RasMol-2.7.5.2_sprintf/src/command.c	2014-02-12 18:02:24.633489549 +0700
-@@ -1286,7 +1286,7 @@ void ShowRecordCommand( void ) {
-         if (record_on[1]) WriteString("record appearance on\n");
-         else WriteString("record apperance off\n");
-         if (RecordMaxMS == 1.) {
--            sprintf(param,RecordTemplate);
-+            sprintf(param, "%s", RecordTemplate);
-         } else{
-             sprintf(param,RecordTemplate,millisec<0?0:millisec);
-         }
-@@ -1381,7 +1381,7 @@ void ShowPlayCommand( void ) {
-             WriteString(param);
-         }
-         if (PlayMaxMS == 1.) {
--            sprintf(param,PlayTemplate);
-+            sprintf(param, "%s", PlayTemplate);
-         } else{
-             sprintf(param,PlayTemplate,millisec<0?0:millisec);
-         }
-@@ -1469,7 +1469,7 @@ void WriteMovieFrame( void ) {
-         RecordPause = True;
-     } else {
-         if (RecordMaxMS == 1.) {
--          sprintf(param,RecordTemplate);
-+          sprintf(param, "%s", RecordTemplate);
-         } else{
-           sprintf(param,RecordTemplate,millisec);
-         }
-@@ -1505,7 +1505,7 @@ static int PlayMovieFrame( void ) {
-         for (play_frame[1] = 0;play_frame[1]<=millisec; play_frame[1]++) 
-         {
-             if (RecordMaxMS == 1.) {
--                sprintf(param,PlayTemplate);
-+                sprintf(param, "%s", PlayTemplate);
-             } else{
-                 sprintf(param,PlayTemplate,millisec-play_frame[1]);
-             }
diff --git a/sci-chemistry/rasmol/files/rasmol-2.7.5.2-glib.h.patch b/sci-chemistry/rasmol/files/rasmol-2.7.5.2-glib.h.patch
deleted file mode 100644
index 69c19dae5e8d..000000000000
--- a/sci-chemistry/rasmol/files/rasmol-2.7.5.2-glib.h.patch
+++ /dev/null
@@ -1,31 +0,0 @@
- src/egg-macros.h           |    3 ++-
- src/eggfileformatchooser.c |    2 ++
- 2 files changed, 4 insertions(+), 1 deletions(-)
-
-diff --git a/src/egg-macros.h b/src/egg-macros.h
-index 9a7caad..1a6bce0 100644
---- a/src/egg-macros.h
-+++ b/src/egg-macros.h
-@@ -9,7 +9,8 @@
- #ifndef _EGG_MACROS_H_
- #define _EGG_MACROS_H_
- 
--#include <glib/gmacros.h>
-+#include <glib.h>
-+#include <glib/gprintf.h>
- 
- G_BEGIN_DECLS
- 
-diff --git a/src/eggfileformatchooser.c b/src/eggfileformatchooser.c
-index 32ce2ab..febfc2e 100644
---- a/src/eggfileformatchooser.c
-+++ b/src/eggfileformatchooser.c
-@@ -19,6 +19,8 @@
- #include "eggfileformatchooser.h"
- #include "egg-macros.h"
- 
-+#include <glib.h>
-+#include <glib/gprintf.h>
- #include <glib/gi18n.h>
- #include <gtk/gtk.h>
- #include <string.h>
diff --git a/sci-chemistry/rasmol/files/rasmol-2.7.5.2-longlong.patch b/sci-chemistry/rasmol/files/rasmol-2.7.5.2-longlong.patch
deleted file mode 100644
index 3cff0fa2f98f..000000000000
--- a/sci-chemistry/rasmol/files/rasmol-2.7.5.2-longlong.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -urp rasmol-2.7.5-23Jul09/src/rasmol.h rasmol-2.7.5-23Jul09-64b/src/rasmol.h
---- rasmol-2.7.5-23Jul09/src/rasmol.h	2009-07-20 21:08:43.000000000 +0700
-+++ rasmol-2.7.5-23Jul09-64b/src/rasmol.h	2013-02-22 14:40:00.378574163 +0700
-@@ -125,6 +125,8 @@
- #define VECTOR_FAR 
- #endif
- 
-+#define _LONGLONG
-+
- /*========================*/
- /*  Default User Options! */
- /*========================*/
diff --git a/sci-chemistry/rasmol/metadata.xml b/sci-chemistry/rasmol/metadata.xml
deleted file mode 100644
index 59ea086025a2..000000000000
--- a/sci-chemistry/rasmol/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-chemistry@gentoo.org</email>
-    <name>Gentoo Chemistry Project</name>
-  </maintainer>
-  <upstream>
-    <remote-id type="sourceforge">openrasmol</remote-id>
-  </upstream>
-</pkgmetadata>
diff --git a/sci-chemistry/rasmol/rasmol-2.7.5.2-r2.ebuild b/sci-chemistry/rasmol/rasmol-2.7.5.2-r2.ebuild
deleted file mode 100644
index 534cffb9bba5..000000000000
--- a/sci-chemistry/rasmol/rasmol-2.7.5.2-r2.ebuild
+++ /dev/null
@@ -1,106 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit epatch fortran-2 multilib prefix toolchain-funcs
-
-MY_P="RasMol_${PV}"
-VERS="13May11"
-
-DESCRIPTION="Molecular Graphics Visualisation Tool"
-HOMEPAGE="http://www.openrasmol.org/"
-#SRC_URI="http://www.rasmol.org/software/${MY_P}.tar.gz"
-SRC_URI="mirror://sourceforge/open${PN}/RasMol/RasMol_2.7.5/${P}-${VERS}.tar.gz"
-#SRC_URI="mirror://sourceforge/open${PN}/RasMol/RasMol_2.7.5/RasMol.tar.gz"
-
-LICENSE="|| ( GPL-2 RASLIC )"
-SLOT="0"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
-	dev-libs/cvector
-	dev-util/gtk-builder-convert
-	>=sci-libs/cbflib-0.9.2
-	>=sci-libs/cqrlib-1.1.2
-	>=sci-libs/neartree-3.1.1
-	x11-libs/cairo
-	x11-libs/gtk+:2
-	x11-libs/libXext
-	x11-libs/libXi
-	x11-libs/vte:0"
-DEPEND="${RDEPEND}
-	app-text/rman
-	x11-base/xorg-proto
-	>=x11-misc/imake-1.0.8-r1"
-
-#S="${WORKDIR}/${PN}-2.7.5-${VERS}"
-S="${WORKDIR}/RasMol-${PV}"
-
-src_prepare() {
-	cd src || die
-
-	epatch \
-		"${FILESDIR}"/${P}-glib.h.patch \
-		"${FILESDIR}"/${P}-format-security.patch \
-		"${FILESDIR}"/${P}-longlong.patch
-
-	if use amd64 || use amd64-linux; then
-		mv rasmol.h rasmol_amd64_save.h && \
-		echo "#define _LONGLONG"|cat - rasmol_amd64_save.h > rasmol.h
-	fi
-
-	sed \
-		-e 's:-traditional::g' \
-		-i Makefile* || die
-
-	cat > Imakefile <<- EOF
-	#define PIXELDEPTH 32
-	#define GTKWIN
-	EOF
-
-	cat Imakefile_base >> Imakefile || die
-	epatch "${FILESDIR}"/2.7.5-bundled-lib.patch
-
-	eprefixify Imakefile
-
-	sed \
-		-e 's:vector.c:v_ector.c:g' \
-		-e 's:vector.o:v_ector.o:g' \
-		-e 's:vector.h:v_ector.h:g' \
-		-i *akefile* || die
-
-	sed \
-		-e 's:vector.h:v_ector.h:g' \
-		-i *.c *.h || die
-
-	mv vector.c v_ector.c || die
-	mv vector.h v_ector.h || die
-
-	CC="$(tc-getBUILD_CC)" LD="$(tc-getLD)" \
-		IMAKECPP="${IMAKECPP:-$(tc-getCPP)}" xmkmf -DGTKWIN || die
-}
-
-src_compile() {
-	emake -C src clean
-	emake \
-		-C src \
-		DEPTHDEF=-DTHIRTYTWOBIT \
-		CC="$(tc-getCC)" \
-		CDEBUGFLAGS="${CFLAGS}" \
-		EXTRA_LDOPTIONS="${LDFLAGS}"
-}
-
-src_install() {
-	libdir=$(get_libdir)
-	insinto /usr/${libdir}/${PN}
-	doins doc/rasmol.hlp
-	dobin src/rasmol
-	dodoc PROJECTS {README,TODO}.txt doc/*.{ps,pdf}.gz doc/rasmol.txt.gz
-	doman doc/rasmol.1
-	insinto /usr/${libdir}/${PN}/databases
-	doins data/*
-
-	dohtml -r *html doc/*.html html_graphics
-}