diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2017-12-18 15:11:02 +0000 |
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committer | V3n3RiX <venerix@redcorelinux.org> | 2017-12-18 15:11:02 +0000 |
commit | 0fb71e0215ed52863e462cccef73c01aff44d43d (patch) | |
tree | 428fc3fa92f9c69ed02878e9b6151a9fb810e651 /sci-chemistry/tinker/tinker-8.2.1.ebuild | |
parent | 9bd54251864651f49e673a08aec9ef79cfe08f04 (diff) |
gentoo resync : 18.12.2017
Diffstat (limited to 'sci-chemistry/tinker/tinker-8.2.1.ebuild')
-rw-r--r-- | sci-chemistry/tinker/tinker-8.2.1.ebuild | 105 |
1 files changed, 105 insertions, 0 deletions
diff --git a/sci-chemistry/tinker/tinker-8.2.1.ebuild b/sci-chemistry/tinker/tinker-8.2.1.ebuild new file mode 100644 index 000000000000..5dfafe90e1f4 --- /dev/null +++ b/sci-chemistry/tinker/tinker-8.2.1.ebuild @@ -0,0 +1,105 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs + +DESCRIPTION="Molecular modeling package that includes force fields, such as AMBER and CHARMM" +HOMEPAGE="http://dasher.wustl.edu/tinker/" +SRC_URI="http://dasher.wustl.edu/${PN}/downloads/${P}.tar.gz" + +SLOT="0" +LICENSE="Tinker" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples" + +DEPEND=" + >=virtual/jdk-1.6" + +RDEPEND=" + >=sci-libs/fftw-3.2.2-r1[fortran,threads] + dev-libs/maloc + !sys-apps/bar + !dev-util/diffuse + >=virtual/jre-1.6" + +RESTRICT="mirror" + +S="${WORKDIR}"/${PN}/source + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + tc-has-openmp || die "Please use an openmp capable compiler like gcc[openmp]" +} + +src_prepare() { + sed 's:strip:true:g' -i ../make/Makefile || die + [[ $(tc-getFC) =~ "ifort" ]] && eapply "${FILESDIR}"/${PV}-openmp.patch + default +} + +src_compile() { + local javalib= + for i in $(java-config -g LDPATH | sed 's|:| |g'); do + [[ -f ${i}/libjvm.so ]] && javalib=${i} + done + + # use dummy routines in pmpb.f instead of apbs calls + rm pmpb.c || die + + if [[ $(tc-getFC) =~ "gfortran" ]]; then + append-flags -fopenmp + _omplib="-lgomp" + else + append-flags -openmp + _omplib="-liomp5" + fi + + _fftwlib="$($(tc-getPKG_CONFIG) --libs fftw3 fftw3_threads)" + + emake \ + -f ../make/Makefile \ + F77="$(tc-getFC)" \ + CC="$(tc-getCC) -c" \ + F77FLAGS=-c \ + OPTFLAGS="${FFLAGS}" \ + LINKFLAGS="${LDFLAGS} -Wl,-rpath ${javalib}" \ + INCLUDEDIR="$(java-pkg_get-jni-cflags) -I${EPREFIX}/usr/include" \ + LIBS="-lmaloc -L${javalib} -ljvm ${_omplib} ${_fftwlib}" \ + all + + mkdir "${S}"/../bin || die + + emake \ + -f ../make/Makefile \ + BINDIR="${S}"/../bin \ + rename_bin +} + +src_test() { + cd "${WORKDIR}"/${PN}/test/ + for test in *.run; do + einfo "Testing ${test} ..." + bash ${test} || die + done +} + +src_install() { + dobin "${WORKDIR}"/${PN}/perl/mdavg "${WORKDIR}"/${PN}/bin/* + + insinto /usr/share/${PN}/ + doins -r "${WORKDIR}"/${PN}/params + + dodoc \ + "${WORKDIR}"/${PN}/doc/{*.txt,*.pdf,0README} + + if use examples; then + insinto /usr/share/${P} + doins -r "${WORKDIR}"/${PN}/example + + doins -r "${WORKDIR}"/${PN}/test + fi + +} |