reinit the tree, so we can have metadata

7 files changed, 248 insertions, 0 deletions

diff --git a/sci-libs/avogadrolibs/Manifest b/sci-libs/avogadrolibs/Manifest
new file mode 100644
index 000000000000..f2afc22581d7
--- /dev/null
+++ b/sci-libs/avogadrolibs/Manifest
@@ -0,0 +1,11 @@
+AUX avogadrolibs-0.7.2-6464.patch 902 SHA256 e4d0e73683ffd6da1a039bf6ea6544065c1d45533633c7793fb2329c924625d7 SHA512 3851a3c5f7c599e439b4faa491ea080264e60bf2a7c4d35e01a10726f901a5797026bf32535107b46ca44335c5723d9ec7f0b6a46e9eebf7ffd9f90c7f2103d3 WHIRLPOOL 2622bc8408f69f4deb0084d78265fe5c70f05f6095f94b1cb0a4b25793ec1d1c4e9f7ef8a13043ea1b6f185d1a7ea11579675ae8a5360e2582fd2e87dcd91074
+AUX avogadrolibs-0.8.0-underlinking.patch 1170 SHA256 51c69e4b440c6d8056c3a8facc45a8771301da6d73abe83afc983b26e57f5104 SHA512 2520af361e250dc2459beec78d073686f44b41166cf81fd7c2a98e2ed30c5f20b5c910fb3808a56202420068043044900e7a504657506a12d16bd0acac87a466 WHIRLPOOL 25bdb409dcd93369b13ade06615f869f20ef758394f0a5a3fdc29d28401a8d48baf2557fa8def9d5906c40b54e6e5c9e945498bcf64c60825bcf6c31807fe549
+DIST avogadrolibs-0.7.2.tar.gz 637001 SHA256 217eb5d62082bbaacefe8ad3c8c8ddbbd41931d306038774f761c0155aeccc76 SHA512 a796af1ab3eb77eb2e5484e9e9cb9d7cf68759c9afbd48ddeb237513583e2c207c7c70b2e87b37843886fc737410456ee451e8fe5a21707bdc01fdf600d4cbb8 WHIRLPOOL 81f0d1949c0a93b9efd1f47f276929b01ca761a5875015be3feafb493be3629b0b8e00c0ba930e1ca73b79fc621a67f7e2ab41ae5e4fc10dddd18449238d933f
+DIST avogadrolibs-0.8.0.tar.bz2 619784 SHA256 0f9a39e3469c4b4622a55ceeace3565c5f7f4df13fdadb73aa1f7d9bba43856c SHA512 edcd220e7c05962543b3cdd61faacb838060a69acb61677150256e2e8f36cad513f58a5071b6ef20510aa4aa6699e517c57d70017d8f1b57936c7f87c9da21c7 WHIRLPOOL 87ea3436af93ec860e90bdbe1b7c24408dae69e17755300f526a03b4e5d0f76217d0d3b695e917c5bf315758b4e2d3ee0c1511734d13e58251ade1d63709949b
+DIST avogadrolibs-0.9.0.tar.gz 742370 SHA256 be627991148ebcc50153ff5838ac147b6de2d90d25f1eeba700619810d353f69 SHA512 7cb000cd6399f33483c38b4f8a9c4a4688f5054cba35e101bed0f2371cea614ace6b3fc65c3ed1418976afef4462a09be868500435a5ae9c98a7ac496c10c36f WHIRLPOOL 9f7d10b2748b370a77ea22aa14abc50afefc49f23554e84600061d52b8c06c36953d1540d142068e4afa9a626b57a201720d9fae567d9a01bce9fca8e191e635
+EBUILD avogadrolibs-0.7.2-r1.ebuild 1134 SHA256 4d2d24e2268196656d6f03299b356c0bd1d40f116844fcf213d47df82b4e9f55 SHA512 647996bc7599e95c89f65e0527d682bab720a0b3c34f96ba979a41d8c4b5efde12de572d98146310a67cff8a8709cf0cc67f4ea49f93aab4cabbf80eb45f6572 WHIRLPOOL bf6e6dd9d1f2007deeaa8425696aa8333bceff6ec05088586d629fa440806647fde8765a5520a5fb61f1b962ed8dae5ecdaf2409e61e2d23f2ed22fa132ceed2
+EBUILD avogadrolibs-0.8.0.ebuild 1287 SHA256 8738be273e50e37cae03de61dabd91af7533e7d56a6e6ceec91bcf99680e22df SHA512 d233f1bec425686d2a8984fd63b135c6391e10db0b21ec95dcb9bd2014fea7bbb9ce16c4c03b9dcb928fc79e53160d26ef5fe2918623b9246a07482c309acff6 WHIRLPOOL f361d9fd74555bc80ca58fbcc290ddcd598dcf6155d8c1462f7f01e5ea3f07ff264dd157576b5d6cb50e4c33aa2569ea42afabfc699654512b2c336de8aaef0e
+EBUILD avogadrolibs-0.9.0.ebuild 1399 SHA256 7ae3aac2d40ad5825bf89528cda26b0913cf7f26ad7b82401e757eaa845f190a SHA512 321dff768e0ec9984630900adb06eea78f2d30f78da5f6ca53f1405d1aae6f24c4c7a2d0c4dc6d2abe9615e19221abd119baeb8bb8dbfa093ce684082a1b2cba WHIRLPOOL 843e148070d9f16de55d0e0dc2d2c10037b7acc409d69bac5b1fa83d622b154c34df2855119218620a4afde7b2b0e7adb94adf88f17722686e4ba32b3db43be6
+MISC ChangeLog 3059 SHA256 f9d2d15410969599521108e93525ae0c5d63bbd3c423c977aaa588d252e22ceb SHA512 0b9d6c1de7321db3cae6a2e307a1a0569c3a42a8f9464835865696da83e69174182f0325bb4e1629d91f6c1ec5f9356ba2ec8319e3593f2a2f8c23dd3f30ce2c WHIRLPOOL 58a4ff0e716850a43edde9705fbf06b6c652f854491b8f1f62720f25a5389e7112e4b8e33006711956d3fecbc1930870f4c73600b1108682c73f8cdc23f14ca8
+MISC ChangeLog-2015 1728 SHA256 854ce6d73ee64d3675d9aeb9450af44f9f2936835f17f728a1fc88dfa4a859a3 SHA512 cd403669a5ea336bc3a6ac16afa4939aa515ec3d4c81f9c6e7fb9b01b1fdde75fc6c6089944b9052e3c1dd1ea562c45e8cb8d4788e4da2fdb301ab38e9e6840f WHIRLPOOL 147a0bdaf79c36d347067ce4e448b81ee7b9cad59ee329d3579e42ebe5e48f1d384106d45bbc85b97131f95c39b69a802d06ba93e39130236fd6c23188cde4a3
+MISC metadata.xml 561 SHA256 f7a56fafd1cd4aa6c8a2c9b49a185fbb0320897a991817f35581ecde95b72785 SHA512 20bee27014f13bcb3d1ca6addad61f4553fb77197c6113d65e71f97cbd6bda4a69e5db7f3ca12db41dc5d4afb09882bb89312a8e4babf5110957d6e86c1cbc81 WHIRLPOOL 8a3961c0d7ed2ab533f389b2147573efb44d0807d7796adbdcac27f4661530f381f4f5a8b476fe4f53138c7a59903792a69bf37210de126de16392b0c54708cd
diff --git a/sci-libs/avogadrolibs/avogadrolibs-0.7.2-r1.ebuild b/sci-libs/avogadrolibs/avogadrolibs-0.7.2-r1.ebuild
new file mode 100644
index 000000000000..ea3c49c5231f
--- /dev/null
+++ b/sci-libs/avogadrolibs/avogadrolibs-0.7.2-r1.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit cmake-utils
+
+DESCRIPTION="Advanced molecule editor and visualizer 2 - libraries"
+HOMEPAGE="http://www.openchemistry.org/"
+SRC_URI="mirror://sourceforge/project/avogadro/avogadro2/${PV}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD GPL-2+"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc opengl qt4 static-plugins test vtk"
+
+REQUIRED_USE="qt4? ( opengl )"
+
+RDEPEND="
+	>=sci-chemistry/molequeue-0.7
+	sci-libs/chemkit
+	sci-libs/hdf5:=
+	opengl? (
+		dev-qt/qtopengl:4
+		media-libs/glew
+		)
+	qt4? (
+		dev-qt/qtcore:4
+		dev-qt/qtgui:4
+		)
+	vtk? ( sci-libs/vtk )
+"
+DEPEND="${DEPEND}
+	test? ( dev-cpp/gtest )"
+
+PATCHES=( "${FILESDIR}"/${P}-6464.patch )
+
+src_configure() {
+	local mycmakeargs=(
+		-DUSE_PROTOCALL=OFF
+		-DBUILD_GPL_PLUGINS=ON
+		$(cmake-utils_use_build doc DOCUMENTATION)
+		$(cmake-utils_use_use opengl OPENGL)
+		$(cmake-utils_use_use qt4 QT)
+		$(cmake-utils_use_build static-plugins STATIC_PLUGINS)
+		$(cmake-utils_use_enable test TESTING)
+		$(cmake-utils_use_use vtk VTK)
+		)
+	cmake-utils_src_configure
+}
diff --git a/sci-libs/avogadrolibs/avogadrolibs-0.8.0.ebuild b/sci-libs/avogadrolibs/avogadrolibs-0.8.0.ebuild
new file mode 100644
index 000000000000..489784bb1736
--- /dev/null
+++ b/sci-libs/avogadrolibs/avogadrolibs-0.8.0.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit cmake-utils
+
+DESCRIPTION="Advanced molecule editor and visualizer 2 - libraries"
+HOMEPAGE="http://www.openchemistry.org/"
+SRC_URI="mirror://sourceforge/project/avogadro/avogadro2/${PV}/${P}.tar.bz2"
+
+SLOT="0"
+LICENSE="BSD GPL-2+"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc opengl qt5 static-plugins test vtk"
+
+REQUIRED_USE="qt5? ( opengl )"
+
+RDEPEND="
+	>=sci-chemistry/molequeue-0.7
+	sci-libs/chemkit
+	sci-libs/hdf5:=
+	opengl? (
+		dev-qt/qtopengl:5
+		media-libs/glew
+		)
+	qt5? (
+		dev-qt/qtconcurrent:5
+		dev-qt/qtcore:5
+		dev-qt/qtnetwork:5
+		dev-qt/qtwebkit:5
+		dev-qt/qtwidgets:5
+		)
+	vtk? ( sci-libs/vtk )
+"
+DEPEND="${DEPEND}
+	dev-cpp/eigen:3
+	test? ( dev-cpp/gtest )"
+
+PATCHES=( "${FILESDIR}"/${PN}-0.7.2-6464.patch "${FILESDIR}/"${P}-underlinking.patch )
+
+src_configure() {
+	local mycmakeargs=(
+		-DUSE_PROTOCALL=OFF
+		-DBUILD_GPL_PLUGINS=ON
+		-DUSE_MOLEQUEUE=ON
+		$(cmake-utils_use_build doc DOCUMENTATION)
+		$(cmake-utils_use_use opengl OPENGL)
+		$(cmake-utils_use_use qt5 QT)
+		$(cmake-utils_use_build static-plugins STATIC_PLUGINS)
+		$(cmake-utils_use_enable test TESTING)
+		$(cmake-utils_use_use vtk VTK)
+		)
+	cmake-utils_src_configure
+}
diff --git a/sci-libs/avogadrolibs/avogadrolibs-0.9.0.ebuild b/sci-libs/avogadrolibs/avogadrolibs-0.9.0.ebuild
new file mode 100644
index 000000000000..ea71fa95ce6e
--- /dev/null
+++ b/sci-libs/avogadrolibs/avogadrolibs-0.9.0.ebuild
@@ -0,0 +1,66 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils
+
+DESCRIPTION="Advanced molecule editor and visualizer 2 - libraries"
+HOMEPAGE="http://www.openchemistry.org/"
+SRC_URI="https://github.com/OpenChemistry/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD GPL-2+"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc hdf5 opengl qt5 static-plugins test vtk"
+
+REQUIRED_USE="qt5? ( opengl )"
+
+RDEPEND="
+	>=sci-chemistry/molequeue-0.7
+	sci-libs/chemkit
+	hdf5? ( sci-libs/hdf5:= )
+	opengl? (
+		dev-qt/qtopengl:5
+		media-libs/glew
+	)
+	qt5? (
+		dev-qt/qtconcurrent:5
+		dev-qt/qtcore:5
+		dev-qt/qtgui:5
+		dev-qt/qtnetwork:5
+		dev-qt/qtwidgets:5
+	)
+	vtk? ( sci-libs/vtk )
+"
+DEPEND="${DEPEND}
+	dev-cpp/eigen:3
+	test? ( dev-cpp/gtest )"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-0.7.2-6464.patch
+	"${FILESDIR}/"${PN}-0.8.0-underlinking.patch
+)
+
+src_configure() {
+	local mycmakeargs=(
+		-DUSE_PROTOCALL=OFF
+		-DBUILD_GPL_PLUGINS=ON
+		-DUSE_MOLEQUEUE=ON
+		-DUSE_HDF5=$(usex hdf5)
+		-DBUILD_DOCUMENTATION=$(usex doc)
+		-DUSE_OPENGL=$(usex opengl)
+		-DUSE_QT=$(usex qt5)
+		-DBUILD_STATIC_PLUGINS=$(usex static-plugins)
+		-DENABLE_TESTING=$(usex test)
+		-DUSE_VTK=$(usex vtk)
+	)
+	cmake-utils_src_configure
+}
+
+src_install() {
+	cmake-utils_src_install
+
+	# TODO: bundles jsoncpp
+	rm "${ED%/}"/usr/lib64/libjsoncpp.a || die
+}
diff --git a/sci-libs/avogadrolibs/files/avogadrolibs-0.7.2-6464.patch b/sci-libs/avogadrolibs/files/avogadrolibs-0.7.2-6464.patch
new file mode 100644
index 000000000000..f763c242cc48
--- /dev/null
+++ b/sci-libs/avogadrolibs/files/avogadrolibs-0.7.2-6464.patch
@@ -0,0 +1,16 @@
+ cmake/AvogadroLibsConfig.cmake.in | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/cmake/AvogadroLibsConfig.cmake.in b/cmake/AvogadroLibsConfig.cmake.in
+index ad57195..8a63400 100644
+--- a/cmake/AvogadroLibsConfig.cmake.in
++++ b/cmake/AvogadroLibsConfig.cmake.in
+@@ -10,7 +10,7 @@ set(AvogadroLibs_VERSION         "${AvogadroLibs_VERSION_MAJOR}.${AvogadroLibs_V
+ 
+ set(AvogadroLibs_INSTALL_PREFIX  "@CMAKE_INSTALL_PREFIX@")
+ set(AvogadroLibs_INCLUDE_DIRS    "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_INCLUDE_DIR@")
+-set(AvogadroLibs_LIBRARY_DIR     "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_LIBRARY_DIR@@LIB_SUFFIX@")
++set(AvogadroLibs_LIBRARY_DIR     "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_LIBRARY_DIR@")
+ set(AvogadroLibs_RUNTIME_DIR     "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_RUNTIME_DIR@")
+ set(AvogadroLibs_CMAKE_DIR       "${AvogadroLibs_LIBRARY_DIR}/cmake/avogadrolibs")
+ 
diff --git a/sci-libs/avogadrolibs/files/avogadrolibs-0.8.0-underlinking.patch b/sci-libs/avogadrolibs/files/avogadrolibs-0.8.0-underlinking.patch
new file mode 100644
index 000000000000..b29f3afe7613
--- /dev/null
+++ b/sci-libs/avogadrolibs/files/avogadrolibs-0.8.0-underlinking.patch
@@ -0,0 +1,34 @@
+Fix underlinking problems in shared libraries.
+
+--- avogadrolibs-0.8.0/avogadro/qtplugins/apbs/CMakeLists.txt
++++ avogadrolibs-0.8.0/avogadro/qtplugins/apbs/CMakeLists.txt
+@@ -23,4 +23,4 @@
+   "${apbs_uis}"
+ )
+ 
+-target_link_libraries(apbs LINK_PRIVATE AvogadroIO MoleQueueClient)
++target_link_libraries(apbs LINK_PRIVATE AvogadroIO MoleQueueClient AvogadroMoleQueue)
+--- avogadrolibs-0.8.0/avogadro/qtplugins/playertool/CMakeLists.txt
++++ avogadrolibs-0.8.0/avogadro/qtplugins/playertool/CMakeLists.txt
+@@ -7,3 +7,5 @@
+   ""
+   playertool.qrc
+ )
++
++target_link_libraries(PlayerTool LINK_PRIVATE Qt5OpenGL)
+--- avogadrolibs-0.8.0/avogadro/qtplugins/povray/CMakeLists.txt
++++ avogadrolibs-0.8.0/avogadro/qtplugins/povray/CMakeLists.txt
+@@ -8,3 +8,5 @@
+   "povray.cpp"
+   ""
+ )
++
++target_link_libraries(POVRay LINK_PRIVATE AvogadroRendering)
+--- avogadrolibs-0.8.0/avogadro/qtplugins/qtaim/CMakeLists.txt
++++ avogadrolibs-0.8.0/avogadro/qtplugins/qtaim/CMakeLists.txt
+@@ -34,3 +34,5 @@
+ 
+ target_link_libraries(QTAIMScenePlugin
+   LINK_PRIVATE AvogadroRendering ${Qt5Concurrent_LIBRARIES})
++target_link_libraries(QTAIMExtension
++  LINK_PRIVATE ${Qt5Concurrent_LIBRARIES})
diff --git a/sci-libs/avogadrolibs/metadata.xml b/sci-libs/avogadrolibs/metadata.xml
new file mode 100644
index 000000000000..ea8e4fdee064
--- /dev/null
+++ b/sci-libs/avogadrolibs/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci-chemistry@gentoo.org</email>
+		<name>Gentoo Chemistry Project</name>
+	</maintainer>
+	<use>
+		<flag name="static-plugins">Build all plugins statically into main plugin modules</flag>
+		<flag name="vtk">include vtk support</flag>
+	</use>
+	<upstream>
+		<remote-id type="github">OpenChemistry/avogadrolibs</remote-id>
+		<remote-id type="sourceforge">avogadro</remote-id>
+	</upstream>
+</pkgmetadata>