reinit the tree, so we can have metadata

4 files changed, 239 insertions, 0 deletions

diff --git a/sci-libs/cdf/files/50cdf b/sci-libs/cdf/files/50cdf
new file mode 100644
index 000000000000..d967cbee6f22
--- /dev/null
+++ b/sci-libs/cdf/files/50cdf
@@ -0,0 +1,5 @@
+CDF_BASE=/usr
+CDF_INC=${CDF_BASE}/include
+CDF_LIB=${CDF_BASE}/lib
+CDF_BIN=${CDF_BASE}/bin
+CDF_HELP=${CDF_BASE}/lib/cdf/help
diff --git a/sci-libs/cdf/files/cdf-3.2-soname.patch b/sci-libs/cdf/files/cdf-3.2-soname.patch
new file mode 100644
index 000000000000..e4f28617faca
--- /dev/null
+++ b/sci-libs/cdf/files/cdf-3.2-soname.patch
@@ -0,0 +1,22 @@
+--- src/lib/Makefile.orig	2007-12-03 17:47:58.476149933 +0000
++++ src/lib/Makefile	2007-12-03 17:50:34.353032850 +0000
+@@ -94,7 +94,7 @@
+ 
+ shared.yes: libcdf.$(SHAREDEXT)
+ 
+-libcdf.so \
++libcdf.$(SHAREDEXT) \
+ libcdf.dylib \
+ libcdf.sl: $(OBJs)
+ 	@if [ -f $@ ] ; then rm $@ ; else $(NULL) ; fi
+@@ -102,8 +102,8 @@
+ 	  echo $(LD) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS); \
+ 	       $(LD) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS); \
+ 	else \
+-	  echo $(LD) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS); \
+-	       $(LD) $(LDFLAGS) -o $@ $(OBJs) $(SYSLIBS); \
++	  echo $(LD) $(LDFLAGS) -Wl,-soname,libcdf.$(SHAREDEXT) -o $@ $(OBJs) $(SYSLIBS); \
++	       $(LD) $(LDFLAGS) -Wl,-soname,libcdf.$(SHAREDEXT) -o $@ $(OBJs) $(SYSLIBS); \
+ 	fi
+ 
+ libcdf.o: $(OBJs)
diff --git a/sci-libs/cdf/files/cdf-3.4-Makefile.patch b/sci-libs/cdf/files/cdf-3.4-Makefile.patch
new file mode 100644
index 000000000000..4a6c0a0ef266
--- /dev/null
+++ b/sci-libs/cdf/files/cdf-3.4-Makefile.patch
@@ -0,0 +1,102 @@
+diff -Nur cdf34_1-dist.orig/Makefile cdf34_1-dist/Makefile
+--- cdf34_1-dist.orig/Makefile	2012-06-19 06:05:21.000000000 -0700
++++ cdf34_1-dist/Makefile	2012-08-03 10:11:38.672992055 -0700
+@@ -715,17 +715,17 @@
+ "PIC=$(PIC_$(OS)_$(ENV))" \
+ "CCx=$(CC_$(OS)_$(ENV))" \
+ "LDx=$(LD_$(OS)_$(ENV))" \
+-"COPTIONS=$(UCOPTIONS) $(COPTIONS_$(OS)_$(ENV))" \
++"COPTIONS=$(CFLAGS) $(COPTIONS_$(OS)_$(ENV))" \
+ "SYSLIBS=$(SYSLIBSshr_$(OS)_$(ENV))" \
+ "SHAREDEXT=$(SHAREDEXT_$(OS))" \
+-"LDOPTIONS=$(LDOPTIONS_$(OS)_$(ENV))" \
++"LDOPTIONS=$(LDFLAGS) $(LDOPTIONS_$(OS)_$(ENV))" \
+ "AROPTIONS=$(AROPTIONS_$(OS))" \
+ "RANLIB=$(RANLIB_$(OS))" \
+ all
+ 	@cd $(TOOLSsrcDIR); $(MAKE) \
+ "CURSES=$(AND.$(CURSES).$(CURSES_$(OS)_$(ENV)))" \
+ "CCx=$(CC_$(OS)_$(ENV))" \
+-"COPTIONS=$(COPTIONS_$(OS)_$(ENV))" \
++"COPTIONS=$(CFLAGS) $(COPTIONS_$(OS)_$(ENV))" \
+ "COPTIONSld=$(COPTIONSld_$(OS)_$(ENV))" \
+ "SYSLIBS=$(SYSLIBSexe_$(OS)_$(ENV))" \
+ "CURSESLIB=$(CURSESLIB_$(OS)_$(ENV))" \
+@@ -735,9 +735,9 @@
+ "FCx=$(FC_$(OS))" \
+ "CCx=$(CC_$(OS)_$(ENV))" \
+ "SHARED=$(AND.$(SHARED).$(SHARED_$(OS)))" \
+-"FOPTIONS=$(FOPTIONS_$(OS)) $(FOPTIONS_$(OS)_$(ENV))" \
++"FOPTIONS=$(FFLAGS) $(FOPTIONS_$(OS)) $(FOPTIONS_$(OS)_$(ENV))" \
+ "FOPTIONSld=$(FOPTIONSld_$(OS)) $(FOPTIONSld_$(OS)_$(ENV))" \
+-"COPTIONS=$(COPTIONS_$(OS)_$(ENV))" \
++"COPTIONS=$(CFLAGS) $(COPTIONS_$(OS)_$(ENV))" \
+ "COPTIONSld=$(COPTIONSld_$(OS)_$(ENV))" \
+ "SYSLIBS=$(SYSLIBSexe_$(OS)_$(ENV))" \
+ "SHAREDEXT=$(SHAREDEXT_$(OS))" \
+@@ -773,12 +773,17 @@
+ install.all: install.definitions install.include install.lib \
+ 	     install.tools install.help_ notify.user copy.leapseconds
+ 
+-install.definitions: create.bin copy.definitions change.definitions
++install.definitions: create.bin
+ install.include: create.include copy.include
+ install.tools: create.bin copy.tools
+ install.help_: create.help copy.help
+ 
+ install.lib: create.lib copy.lib.a
++	@if [ -f $(LIBsrcDIR)/libcdf.$(SHAREDEXT) ] ; then \
++	   $(MAKE) "INSTALLDIR=$(INSTALLDIR)" install.lib.so ; \
++	 else \
++	   $(NULL) ; \
++	 fi
+ 	@if [ -f $(LIBsrcDIR)/libcdf.so ] ; then \
+ 	   $(MAKE) "INSTALLDIR=$(INSTALLDIR)" install.lib.so ; \
+ 	 else \
+@@ -884,8 +889,8 @@
+ 	      cp $(INCsrcDIR)/cdfconfig.h $(INSTALLDIR)/include
+ 
+ copy.lib.so:
+-	@echo cp $(LIBsrcDIR)/libcdf.so $(INSTALLDIR)/lib
+-	      cp $(LIBsrcDIR)/libcdf.so $(INSTALLDIR)/lib
++	@echo cp $(LIBsrcDIR)/libcdf.$(SHAREDEXT) $(INSTALLDIR)/lib
++	      cp $(LIBsrcDIR)/libcdf.$(SHAREDEXT) $(INSTALLDIR)/lib
+ 
+ copy.lib.sl:
+ 	@echo cp $(LIBsrcDIR)/libcdf.sl $(INSTALLDIR)/lib
+@@ -1964,15 +1969,15 @@
+ show.supported:
+ 	@echo SHARED is $(SUPPORTED.$(SHARED_$(OS)))
+ 	@echo CURSES is $(SUPPORTED.$(CURSES_$(OS)_$(ENV)))
+-	@echo FOPTIONS=$(FOPTIONS_$(OS))
++	@echo FOPTIONS=$(FFLAGS) $(FOPTIONS_$(OS))
+ 	@echo FOPTIONSld=$(FOPTIONSld_$(OS))
+ 	@echo SHAREDEXT=$(SHAREDEXT_$(OS))
+-	@echo LDOPTIONSlibcdf=$(LDOPTIONS_$(OS)_$(ENV))
++	@echo LDOPTIONSlibcdf=$(LDFLAGS) $(LDOPTIONS_$(OS)_$(ENV))
+ 	@echo RANLIB=$(RANLIB_$(OS))
+ 	@echo FCx=$(FC_$(OS))
+ 	@echo CCx=$(CC_$(OS)_$(ENV))
+ 	@echo PIC=$(PIC_$(OS)_$(ENV))
+-	@echo COPTIONS=$(COPTIONS_$(OS)_$(ENV))
++	@echo COPTIONS=$(CFLAGS) $(COPTIONS_$(OS)_$(ENV))
+ 	@echo COPTIONSld=$(COPTIONSld_$(OS)_$(ENV))
+ 	@echo CURSESLIB=$(CURSESLIB_$(OS)_$(ENV))
+ 	@echo SYSLIBSexe=$(SYSLIBSexe_$(OS)_$(ENV))
+diff -Nur cdf34_1-dist.orig/src/tools/Makefile cdf34_1-dist/src/tools/Makefile
+--- cdf34_1-dist.orig/src/tools/Makefile	2012-06-15 09:22:16.000000000 -0700
++++ cdf34_1-dist/src/tools/Makefile	2012-08-03 10:11:38.685992724 -0700
+@@ -35,10 +35,10 @@
+ INCLUDEcdf= ../include
+ 
+ CC=$(CCx)
+-CFLAGS=$(COPTIONS) -I$(INCLUDEcdf)
+-CFLAGSld=$(COPTIONSld)
++CFLAGS:=$(CFLAGS) $(COPTIONS) -I$(INCLUDEcdf)
++CFLAGSld=$(LDFLAGS) $(COPTIONSld)
+ 
+-LIBCDFa=../lib/libcdf.a 
++LIBCDFa=../lib/libcdf.so.3
+ LIBs1=$(LIBCDFa) $(SYSLIBS)
+ LIBs2=$(LIBCDFa) $(CURSESLIB) $(SYSLIBS)
+ 
diff --git a/sci-libs/cdf/files/cdf-3.5.0.2-Makefile.patch b/sci-libs/cdf/files/cdf-3.5.0.2-Makefile.patch
new file mode 100644
index 000000000000..3bab69dfc6ac
--- /dev/null
+++ b/sci-libs/cdf/files/cdf-3.5.0.2-Makefile.patch
@@ -0,0 +1,110 @@
+ Makefile           | 27 ++++++++++++++++-----------
+ src/tools/Makefile |  6 +++---
+ 2 files changed, 19 insertions(+), 14 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index 7f240db..222c4f1 100644
+--- a/Makefile
++++ b/Makefile
+@@ -771,17 +771,17 @@ all
+ "PIC=$(PIC_$(OS)_$(ENV))" \
+ "CCx=$(CC_$(OS)_$(ENV))" \
+ "LDx=$(LD_$(OS)_$(ENV))" \
+-"COPTIONS=$(UCOPTIONS) $(COPTIONS_$(OS)_$(ENV))" \
++"COPTIONS=$(CFLAGS) $(COPTIONS_$(OS)_$(ENV))" \
+ "SYSLIBS=$(SYSLIBSshr_$(OS)_$(ENV))" \
+ "SHAREDEXT=$(SHAREDEXT_$(OS))" \
+-"LDOPTIONS=$(LDOPTIONS_$(OS)_$(ENV))" \
++"LDOPTIONS=$(LDFLAGS) $(LDOPTIONS_$(OS)_$(ENV))" \
+ "AROPTIONS=$(AROPTIONS_$(OS))" \
+ "RANLIB=$(RANLIB_$(OS))" \
+ all
+ 	@cd $(TOOLSsrcDIR); $(MAKE) \
+ "CURSES=$(AND.$(CURSES).$(CURSES_$(OS)_$(ENV)))" \
+ "CCx=$(CC_$(OS)_$(ENV))" \
+-"COPTIONS=$(COPTIONS_$(OS)_$(ENV))" \
++"COPTIONS=$(CFLAGS) $(COPTIONS_$(OS)_$(ENV))" \
+ "COPTIONSld=$(COPTIONSld_$(OS)_$(ENV))" \
+ "SYSLIBS=$(SYSLIBSexe_$(OS)_$(ENV))" \
+ "CURSESLIB=$(CURSESLIB_$(OS)_$(ENV))" \
+@@ -791,9 +791,9 @@ all
+ "FCx=$(FC_$(OS))" \
+ "CCx=$(CC_$(OS)_$(ENV))" \
+ "SHARED=$(AND.$(SHARED).$(SHARED_$(OS)))" \
+-"FOPTIONS=$(FOPTIONS_$(OS)) $(FOPTIONS_$(OS)_$(ENV))" \
++"FOPTIONS=$(FFLAGS) $(FOPTIONS_$(OS)) $(FOPTIONS_$(OS)_$(ENV))" \
+ "FOPTIONSld=$(FOPTIONSld_$(OS)) $(FOPTIONSld_$(OS)_$(ENV))" \
+-"COPTIONS=$(COPTIONS_$(OS)_$(ENV))" \
++"COPTIONS=$(CFLAGS) $(COPTIONS_$(OS)_$(ENV))" \
+ "COPTIONSld=$(COPTIONSld_$(OS)_$(ENV))" \
+ "SYSLIBS=$(SYSLIBSexe_$(OS)_$(ENV))" \
+ "SHAREDEXT=$(SHAREDEXT_$(OS))" \
+@@ -829,12 +829,17 @@ install: install.$(PART)
+ install.all: install.definitions install.include install.lib \
+ 	     install.tools install.help_ notify.user copy.leapseconds
+ 
+-install.definitions: create.bin copy.definitions change.definitions
++install.definitions: create.bin
+ install.include: create.include copy.include
+ install.tools: create.bin copy.tools
+ install.help_: create.help copy.help
+ 
+ install.lib: create.lib copy.lib.a
++	@if [ -f $(LIBsrcDIR)/libcdf.$(SHAREDEXT) ] ; then \
++	   $(MAKE) "INSTALLDIR=$(INSTALLDIR)" install.lib.so ; \
++	 else \
++	   $(NULL) ; \
++	 fi
+ 	@if [ -f $(LIBsrcDIR)/libcdf.so ] ; then \
+ 	   $(MAKE) "INSTALLDIR=$(INSTALLDIR)" install.lib.so ; \
+ 	 else \
+@@ -940,8 +945,8 @@ copy.include:
+ 	      cp $(INCsrcDIR)/cdfconfig.h $(INSTALLDIR)/include
+ 
+ copy.lib.so:
+-	@echo cp $(LIBsrcDIR)/libcdf.so $(INSTALLDIR)/lib
+-	      cp $(LIBsrcDIR)/libcdf.so $(INSTALLDIR)/lib
++	@echo cp $(LIBsrcDIR)/libcdf.$(SHAREDEXT) $(INSTALLDIR)/lib
++	      cp $(LIBsrcDIR)/libcdf.$(SHAREDEXT) $(INSTALLDIR)/lib
+ 
+ copy.lib.sl:
+ 	@echo cp $(LIBsrcDIR)/libcdf.sl $(INSTALLDIR)/lib
+@@ -2128,15 +2133,15 @@ show.posix.alphaI: show.supported
+ show.supported:
+ 	@echo SHARED is $(SUPPORTED.$(SHARED_$(OS)))
+ 	@echo CURSES is $(SUPPORTED.$(CURSES_$(OS)_$(ENV)))
+-	@echo FOPTIONS=$(FOPTIONS_$(OS))
++	@echo FOPTIONS=$(FFLAGS) $(FOPTIONS_$(OS))
+ 	@echo FOPTIONSld=$(FOPTIONSld_$(OS))
+ 	@echo SHAREDEXT=$(SHAREDEXT_$(OS))
+-	@echo LDOPTIONSlibcdf=$(LDOPTIONS_$(OS)_$(ENV))
++	@echo LDOPTIONSlibcdf=$(LDFLAGS) $(LDOPTIONS_$(OS)_$(ENV))
+ 	@echo RANLIB=$(RANLIB_$(OS))
+ 	@echo FCx=$(FC_$(OS))
+ 	@echo CCx=$(CC_$(OS)_$(ENV))
+ 	@echo PIC=$(PIC_$(OS)_$(ENV))
+-	@echo COPTIONS=$(COPTIONS_$(OS)_$(ENV))
++	@echo COPTIONS=$(CFLAGS) $(COPTIONS_$(OS)_$(ENV))
+ 	@echo COPTIONSld=$(COPTIONSld_$(OS)_$(ENV))
+ 	@echo CURSESLIB=$(CURSESLIB_$(OS)_$(ENV))
+ 	@echo SYSLIBSexe=$(SYSLIBSexe_$(OS)_$(ENV))
+diff --git a/src/tools/Makefile b/src/tools/Makefile
+index 3773c0c..1cabf61 100644
+--- a/src/tools/Makefile
++++ b/src/tools/Makefile
+@@ -40,12 +40,12 @@ CURSESLIB=-lncurses
+ INCLUDEcdf= ../include
+ 
+ CC=$(CCx)
+-CFLAGS=$(COPTIONS) -I$(INCLUDEcdf)
+-CFLAGSld=$(COPTIONSld)
++CFLAGS:=$(CFLAGS) $(COPTIONS) -I$(INCLUDEcdf)
++CFLAGSld=$(LDFLAGS) $(COPTIONSld)
+ 
+ WHICHOS=$(shell uname -a | cut -f1 -d" ")
+ ifeq ("$(WHICHOS)","Darwin")
+-  LIBCDFa=../lib/libcdf.a
++  LIBCDFa=../lib/libcdf.so.3
+ else
+   WHICHOS=$(shell uname -a | cut -f7 -d" ")
+   ifeq ("$(WHICHOS)","Cygwin")