reinit the tree, so we can have metadata

4 files changed, 105 insertions, 0 deletions

diff --git a/sci-libs/cholmod/Manifest b/sci-libs/cholmod/Manifest
new file mode 100644
index 000000000000..dd9c7e598d76
--- /dev/null
+++ b/sci-libs/cholmod/Manifest
@@ -0,0 +1,6 @@
+AUX cholmod-1.7.4-parmetis32.patch 702 SHA256 fb8f2950c908d21ee649c16f8e26bbe5e37284c1417cf9b7f22e6f82532944f8 SHA512 a1694a7f42f10c7619e23817e93f76df35bc208200918b74a6dd68bb4662d57ce2f3665be424ad4b5c8a4ea9c3957676c48716aa0e47d9fb19337dc43e759ecc WHIRLPOOL ce45b6ad88acebba64df6209d12cfca54a22d7cee9b529b8f20d9f8d855dcdcda6d9485e110bac15b99a86af8b996fccedc0fd43f87bdff83a824d1c2cba1aa6
+DIST cholmod-2.1.2.tar.bz2 656458 SHA256 eea80ad7b797866df1505feafa8c33279f6bc7e7e5aec4f00a167a0a0e73675f SHA512 7aca97de4c60ff2d7a76a776be4c2d61243a159a51b9e147fa2480f2aaf61a5d966eb0f1cb57c0145510437f6c478fa30384b741709d0a02432b74ada3e78089 WHIRLPOOL 8f8f2c4f504f30905c442422042d0b3a203cb24ab289b51bdb4ee6606ca006eef3afb2611bcc6074c1532893caa5ec5a63e4c4d46d115e2528700d98b65dcb27
+EBUILD cholmod-2.1.2.ebuild 1776 SHA256 854badc928abd84bbeea9cd6a1a5f6f0c61e49498f7510ab6b427f52341956b2 SHA512 f83dc657b727a3b160fa8491d013e3c78a401ab9e1e79d620c2db23e003c84ac5375d6651ccacf8bafc0bd00e983effa382710fb092e1e99ff48cf8992c7200d WHIRLPOOL 560d9127b01ba49e2606a3e6ed7c728339fe6011434ace34879c67c3b62e405fdecc8bd2e9235d18a89967bbb6d703de1f5a54ac7a55c7fe3d2c4d29d51b812b
+MISC ChangeLog 2658 SHA256 ef0bb84fbc202ea953bff7019e80bb49f50e961b6dda7c87146ad75071c0c400 SHA512 2b01eb2340b2169a336c4215b148c8b4288a8d64434ce2ebc4689d651243f90c8a9f8359f1fe0769b7396892a92986db8d2c9dc8ea4d4bebc1eb1ddde898f748 WHIRLPOOL 65c2196421e027e52a213d03a7855d1edef22ab72f90ad6125cd0d7cad4f5bb4f3b52b09855352ce4da0b6b5d1a97d2984b876f6455bb050c37c95caec76af27
+MISC ChangeLog-2015 6846 SHA256 0bce94bab45022b8bca8d584227b24c799e58ce573d7309fb6323934e21c6515 SHA512 6c804d678836283443a25cb7af76bee629c0fc6d08d62c108598ad641b8c3d12c661a7d0b69da93b34b0bd7dbf39602deac6cd23eab6b073b6ed183449357617 WHIRLPOOL 5334066f64b241ac47a8774d02afb8f3b3c2412f289096ed3cc866efdba40816b8d790f9575af4fa82baf191a4c133a22ddf5576f0daac16c4c3e462576ffe90
+MISC metadata.xml 603 SHA256 fb114028f8b69f3352fcc875d0a4da48f3fffd42e59f980414d47f8f78a23406 SHA512 da9db58edeab0b40813e47567cbaa4e54ae8aa9f4cdc89cd87f1e35bb65991c305bc955e6aba744d322c6375de0e8ba1253415814175cf1f4bc2a01de2e11d22 WHIRLPOOL befdf5d17aae08a5d9eb0f59597f2c74bd9ad3f463df759c9eb5b4b03dcc602dfed11262e852dfb55d8ce13943d6b174d22b3b3d87bf7fbd9c95c545c8d87ac1
diff --git a/sci-libs/cholmod/cholmod-2.1.2.ebuild b/sci-libs/cholmod/cholmod-2.1.2.ebuild
new file mode 100644
index 000000000000..32bd49515a4b
--- /dev/null
+++ b/sci-libs/cholmod/cholmod-2.1.2.ebuild
@@ -0,0 +1,63 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit autotools-utils multilib toolchain-funcs
+
+DESCRIPTION="Sparse Cholesky factorization and update/downdate library"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/cholmod/"
+SRC_URI="https://dev.gentoo.org/~bicatali/distfiles/${P}.tar.bz2"
+
+LICENSE="minimal? ( LGPL-2.1 ) !minimal? ( GPL-2 )"
+SLOT="0"
+KEYWORDS="~alpha amd64 ~arm ~arm64 hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~x86-macos"
+IUSE="cuda doc lapack metis minimal static-libs"
+
+RDEPEND="
+	>=sci-libs/amd-2.3
+	>=sci-libs/colamd-2.8
+	cuda? ( x11-drivers/nvidia-drivers dev-util/nvidia-cuda-toolkit )
+	lapack? ( virtual/lapack )
+	metis? (
+		>=sci-libs/camd-2.3
+		>=sci-libs/ccolamd-2.8
+		|| ( sci-libs/metis sci-libs/parmetis ) )"
+
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? ( virtual/latex-base )"
+
+src_prepare() {
+	# bug #399483 does not build with parmetis-3.2
+	has_version "=sci-libs/parmetis-3.2*" && \
+		epatch "${FILESDIR}"/${PN}-1.7.4-parmetis32.patch
+}
+
+src_configure() {
+	local lapack_libs=no
+	local blas_libs=no
+	if use lapack; then
+		blas_libs=$($(tc-getPKG_CONFIG) --libs blas)
+		lapack_libs=$($(tc-getPKG_CONFIG) --libs lapack)
+	fi
+	local myeconfargs=(
+		--with-blas="${blas_libs}"
+		--with-lapack="${lapack_libs}"
+		$(use_with doc)
+		$(use_with !minimal modify)
+		$(use_with !minimal matrixops)
+		$(use_with !minimal partition)
+		$(use_with metis camd)
+		$(use_with metis partition)
+		$(use_with lapack supernodal)
+	)
+	if use cuda; then
+		myeconfargs+=(
+			--with-cuda
+			--with-cublas-libs="-L${EPREFIX}/opt/cuda/$(get_libdir) -lcublas"
+			--with-cublas-cflags="-I${EPREFIX}/opt/cuda/include"
+		)
+	fi
+	autotools-utils_src_configure
+}
diff --git a/sci-libs/cholmod/files/cholmod-1.7.4-parmetis32.patch b/sci-libs/cholmod/files/cholmod-1.7.4-parmetis32.patch
new file mode 100644
index 000000000000..6b50ae8bcea7
--- /dev/null
+++ b/sci-libs/cholmod/files/cholmod-1.7.4-parmetis32.patch
@@ -0,0 +1,20 @@
+diff -Nur CHOLMOD.orig/Partition/cholmod_metis.c CHOLMOD/Partition/cholmod_metis.c
+--- CHOLMOD.orig/Partition/cholmod_metis.c	2012-03-13 03:57:37.000000000 +0000
++++ CHOLMOD/Partition/cholmod_metis.c	2012-03-13 04:02:22.000000000 +0000
+@@ -216,6 +216,7 @@
+     int Opt [8], nn, csp ;
+     size_t n1 ;
+     DEBUG (Int nsep) ;
++    float ubfactor = 1.05;
+ 
+     /* ---------------------------------------------------------------------- */
+     /* check inputs */
+@@ -370,7 +371,7 @@
+ #endif
+ 
+     nn = n ;
+-    METIS_NodeComputeSeparator (&nn, Mp, Mi, Mnw, Mew, Opt, &csp, Mpart) ;
++    METIS_NodeComputeSeparator (&nn, Mp, Mi, Mnw, Mew, &ubfactor, Opt, &csp, Mpart) ;
+     n = nn ;
+     csep = csp ;
+ 
diff --git a/sci-libs/cholmod/metadata.xml b/sci-libs/cholmod/metadata.xml
new file mode 100644
index 000000000000..79ccb35047bf
--- /dev/null
+++ b/sci-libs/cholmod/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci@gentoo.org</email>
+    <name>Gentoo Science Project</name>
+  </maintainer>
+  <longdescription lang="en">
+  CHOLMOD is a set of ANSI C routines for sparse Cholesky
+  factorization and update/downdate.
+</longdescription>
+  <use>
+    <flag name="cuda">Use nvidia cuda toolkit for speeding up computations</flag>
+    <flag name="metis">Enable the Partition module to cholmod using <pkg>sci-libs/metis</pkg></flag>
+  </use>
+</pkgmetadata>