gentoo resync : 10.09.2021

4 files changed, 1 insertions, 192 deletions

diff --git a/sci-libs/dealii/Manifest b/sci-libs/dealii/Manifest
index 9a0c2c37d2da..f9d7eedcc809 100644
--- a/sci-libs/dealii/Manifest
+++ b/sci-libs/dealii/Manifest
@@ -1,13 +1,9 @@
 AUX dealii-9.1.1-no-ld-flags.patch 1044 BLAKE2B fed995fbd5563bfee6b4dd232d5d9aaecd8f0d206f06679b5d79022420c83ac2752414417499ac9181c25ddc594e492bf8d6b6af19fdfd1f047e7e089193de5d SHA512 15346b31f4ac5df3b1a3a3dcb215d4bd49e3e67480c86d4c78dbd5d27ae33f6cfa8b03fdc561e38090a2c22ae8ba71d13cd9b1bbdda3eedefd498f5cedfd0a09
-AUX dealii-9.2.0-fix-boost-include-file.patch 533 BLAKE2B f8aad2b17a3083da8c1aaf5461e5cf2b4aac2e78b34c46c7a3b965495a9c263687db6d75498a404be44f09bb952e7eeea0ac005da047f98ae526edd5ee8af473 SHA512 9a05e7787b7352c59e4756729ca4080f6c2a21bcd84429f2ed22d3fcd8e6d7183cb5686a7d88b0fd5868b2bfe53130d1fb2e9c3940ca0ccb8c8119a5e7532625
-DIST dealii-9.2.0-offline_documentation.tar.gz 277987911 BLAKE2B d14e15bc252f481707b04e9ca3fd05b5469035537a099466a8272fa1d56833c99d845871534df75bbb2efb29063e738700a5a2815b653cdd14b49b3a93add368 SHA512 9680731b4d837561c3682a65391b442cfb8d2a947b0e4e37cad1df83877b371997d084eac52e2bf34b190ea54996d41ddd89bee79fff24d710199417f3f345ab
-DIST dealii-9.2.0.tar.gz 24688964 BLAKE2B 60a8ede72a49cb2e658b3d6d53fb332a96f44a7fb9bb499ba54175138d49f38a9b75d9bea2eaddcaa3f50d97ce53961692b35f89578f535d32301680e6f1d68b SHA512 7c76435e45c9c302c4f95f588229f5a9b81f0450bd029729553c706a25dfd16f5c02c50fd2618d7e285d18927b63426110d2c6a074242b91cf789bd4bc77acc5
 DIST dealii-9.3.0-offline_documentation.tar.gz 342390250 BLAKE2B 5ed1e5d5f7cd6a44f0dccc4b092c241fadc430facb77ec2a9ffb30d00dc13751f0ac08e2f05960584fbb60b26b64fa070c437f392e2e62b4ba1328e4efcd0677 SHA512 ff04cf3690160119041a9dc102ece81c351c41809fe1717cbc95aa97f2f1fe2ccc36e1b4b3045b73056a54fc7e3a27d3d734908760e9c34203b566b328b104b7
 DIST dealii-9.3.0.tar.gz 24458373 BLAKE2B 27cdaee4e7ec9c170e11c5ba9bff8fd654bb2a9452df3402d5639268a6fe31565faa38d240810a0323b7253f2ed665c25fa0948c56b9924f1836531f2414bc92 SHA512 d558b5dda1067f7d995bc5f265614e3bc5e70190d24c1c61047af1ddc52fa007013c51901b9b8eacfbe8b360dffcb22aca87e0019ee09581b928e00c39198c98
 DIST dealii-9.3.1-offline_documentation.tar.gz 342389060 BLAKE2B 71b47816dd22f490168f91c667308ecf10d5733bb4e4d6f7f214dfa729f47e6f44bf32382167f2f6c864038d04c994cab7ef91ae647b4188c53995c5c2904bf3 SHA512 7ab70b7821924a4383f2d46bcb44e702858206a8444870d3e2282d726b2c1cf3009f615888206312aed34eae9595ff19664da422e33c47720cce5c5fd37c1e18
 DIST dealii-9.3.1.tar.gz 24459280 BLAKE2B c7f1d461017da24efd6f3247217fd1b889e0cbf2ac62c3fd305e03aed90d5ba82b58ceb84d34a84608b833b734e12abc77a63693aaa6eed767b4f5f157233ba0 SHA512 c3ba3e16fa4792bb4f3e85163e67b08271c84faff72c49b858a955851401adf2499e278790803061a61c4024964f6da3f0ef7b09c0370d8d0b5af16b7c3bdaef
-EBUILD dealii-9.2.0-r1.ebuild 5191 BLAKE2B bc3895d34609823b0538d30a9bb068e8844d0e86aa76565e24548d5dd27ae182c50c7a1f0e7a73dc2e175a0664e04d12366720dfd4221a2ed72272cf083d875a SHA512 7b5a428482ca1011b77aad608322d0fa403f4df1e95f60a6c69c6f16a0aceaef86bbfc73ee714b4741caa32b418edf8a10bc6f3f3c08bf20371a11de659bd063
 EBUILD dealii-9.3.0-r1.ebuild 5321 BLAKE2B 0e665c64f381364e1319d2f79c66076c5e5d8c64a0449bf47e265f210553ca379f04e4bffcd1c77b4ff7fb3d0a62560f861e6815c3daa7d285f3c90c0e107d67 SHA512 42fc31b610dd96b26c2b96e35304a4f16e65d5bdedec2a23bd4dd1220c0a6e1c9d940b6e91832dd99bfce2f743339ac4d51bf6aabd2a1c3e60278b77f2596797
 EBUILD dealii-9.3.1.ebuild 5321 BLAKE2B 9184a815e1979ef36752a2596617d17057584b073d6fa9de0c62baba62399271abb059490efe0beb35ac89d05b9960d0213887ab831abf5604fe894c2c2d5d15 SHA512 5823d35c1a2c10fb40ad6a897e517e72e206e79df1f1361461b5ae029d08d1605266a8f5a9aa3484bfc31141cef28d756b0bf7f19d09f91ab90ff3208ef63663
 EBUILD dealii-9999.ebuild 5372 BLAKE2B 629be1d6fe6a18cc64e7733f11ea2af64003c367bc3f272e5c42e2bf0ee499597dec6379fc65f571fbdd3c2d0f2fe1e14759b74a43614787f819fa353e4a10d6 SHA512 e350d34c18c3c100ac2827e1f8c22704a4b42f677b774d5d68193da72b802c8e294849783b6c9a5f1afe51f73308637e3be18b0bd9b3ae8b49a2eeda35e1335b
-MISC metadata.xml 2636 BLAKE2B 8874dd9c20a2dbd781f4a157b3639b1d66faf1b3f32dc6ac1c42fea274c0035b9632108117472b62d9161fab705f5a365aeaaaa44f555a5c2658ebd0a0fff045 SHA512 149082068c7287346a42b901501eddeea6feaaf9cc91c46681f63e63c68dd2a7e3161c3520417a44dc7eec7e673c76c6e967b5b46e898714ce65c4ea4924d25d
+MISC metadata.xml 2439 BLAKE2B 98a47021be5563a29d707d80e7c3fee23e058a94003fcfacf0acf716a58f9a5d615566d411a95bf80a9d38dff8374cfb287ebe0eebaec4b8c40d3878595328dc SHA512 678bd613d2f7854a4f3131ec89a6aa77ddff54bcad040e71a8bb786aeb8719ccee1929a21df1d82135d0df6772707575eff17398dc91d30ec0dd68c974762983
diff --git a/sci-libs/dealii/dealii-9.2.0-r1.ebuild b/sci-libs/dealii/dealii-9.2.0-r1.ebuild
deleted file mode 100644
index fa6f92f0b59e..000000000000
--- a/sci-libs/dealii/dealii-9.2.0-r1.ebuild
+++ /dev/null
@@ -1,160 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit cmake-utils multilib
-
-# deal.II uses its own FindLAPACK.cmake file that calls into the system
-# FindLAPACK.cmake module and does additional internal setup. Do not remove
-# any of these modules:
-CMAKE_REMOVE_MODULES_LIST=""
-
-DESCRIPTION="Solving partial differential equations with the finite element method"
-HOMEPAGE="https://www.dealii.org/"
-
-if [[ ${PV} = *9999* ]]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/dealii/dealii.git"
-	SRC_URI=""
-else
-	SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}.tar.gz
-		doc? (
-			https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}-offline_documentation.tar.gz
-			)"
-	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-fi
-
-LICENSE="LGPL-2.1+"
-SLOT="0"
-IUSE="
-	adolc assimp arpack cpu_flags_x86_avx cpu_flags_x86_avx512f
-	cpu_flags_x86_sse2 cuda +debug doc +examples ginkgo gmsh +gsl hdf5
-	+lapack metis mpi muparser nanoflann opencascade p4est petsc
-	scalapack slepc +sparse static-libs sundials symengine +tbb trilinos
-"
-
-# TODO: add slepc use flag once slepc is packaged for gentoo-science
-REQUIRED_USE="
-	p4est? ( mpi )
-	slepc? ( petsc )
-	trilinos? ( mpi )"
-
-RDEPEND="dev-libs/boost
-	app-arch/bzip2
-	sys-libs/zlib
-	adolc? ( sci-libs/adolc )
-	arpack? ( sci-libs/arpack[mpi=] )
-	assimp? ( media-libs/assimp )
-	cuda? ( dev-util/nvidia-cuda-sdk )
-	ginkgo? ( sci-libs/ginkgo )
-	gmsh? ( sci-libs/gmsh )
-	gsl? ( sci-libs/gsl:= )
-	hdf5? ( sci-libs/hdf5[mpi=] )
-	lapack? ( virtual/lapack )
-	metis? (
-		>=sci-libs/metis-5
-		mpi? ( >=sci-libs/parmetis-4 )
-	)
-	mpi? ( virtual/mpi )
-	muparser? ( dev-cpp/muParser )
-	nanoflann? ( sci-libs/nanoflann )
-	opencascade? ( sci-libs/opencascade:* )
-	p4est? ( sci-libs/p4est[mpi] )
-	petsc? ( sci-mathematics/petsc[mpi=] )
-	scalapack? ( sci-libs/scalapack )
-	slepc? ( sci-mathematics/slepc[mpi=] )
-	sparse? ( sci-libs/umfpack )
-	sundials? ( <sci-libs/sundials-4:= )
-	symengine? ( >=sci-libs/symengine-0.4:= )
-	tbb? ( dev-cpp/tbb )
-	trilinos? ( sci-libs/trilinos )"
-
-DEPEND="${RDEPEND}
-	virtual/pkgconfig
-	doc? ( app-doc/doxygen[dot] dev-lang/perl )"
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-9.1.1-no-ld-flags.patch
-	"${FILESDIR}"/${PN}-9.2.0-fix-boost-include-file.patch
-)
-
-src_configure() {
-	# deal.II needs a custom build type:
-	local CMAKE_BUILD_TYPE=$(usex debug DebugRelease Release)
-
-	local mycmakeargs=(
-		-DDEAL_II_PACKAGE_VERSION="${PV}"
-		-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF
-		-DDEAL_II_ALLOW_AUTODETECTION=OFF
-		-DDEAL_II_ALLOW_BUNDLED=OFF
-		-DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF
-		-DDEAL_II_COMPILE_EXAMPLES=OFF
-		-DDEAL_II_DOCHTML_RELDIR="share/doc/${P}/html"
-		-DDEAL_II_DOCREADME_RELDIR="share/doc/${P}"
-		-DDEAL_II_COMPILE_EXAMPLES=OFF
-		-DDEAL_II_EXAMPLES_RELDIR="share/doc/${P}/examples"
-		-DDEAL_II_LIBRARY_RELDIR="$(get_libdir)"
-		-DDEAL_II_SHARE_RELDIR="share/${PN}"
-		-DDEAL_II_WITH_ZLIB=ON
-		-DDEAL_II_WITH_ADOLC="$(usex adolc)"
-		-DDEAL_II_WITH_ASSIMP="$(usex assimp)"
-		-DDEAL_II_WITH_ARPACK="$(usex arpack)"
-		-DDEAL_II_WITH_CUDA="$(usex cuda)"
-		-DDEAL_II_WITH_GINKGO="$(usex ginkgo)"
-		-DDEAL_II_COMPONENT_DOCUMENTATION="$(usex doc)"
-		-DDEAL_II_COMPONENT_EXAMPLES="$(usex examples)"
-		-DDEAL_II_WITH_GMSH="$(usex gmsh)"
-		-DDEAL_II_WITH_GSL="$(usex gsl)"
-		-DDEAL_II_WITH_HDF5="$(usex hdf5)"
-		-DDEAL_II_WITH_LAPACK="$(usex lapack)"
-		-DDEAL_II_WITH_METIS="$(usex metis)"
-		-DDEAL_II_WITH_MPI="$(usex mpi)"
-		-DDEAL_II_WITH_MUPARSER="$(usex muparser)"
-		-DDEAL_II_WITH_NANOFLANN="$(usex nanoflann)"
-		-DDEAL_II_WITH_OPENCASCADE="$(usex opencascade)"
-		-DDEAL_II_WITH_P4EST="$(usex p4est)"
-		-DDEAL_II_WITH_PETSC="$(usex petsc)"
-		-DDEAL_II_WITH_SCALAPACK="$(usex scalapack)"
-		-DDEAL_II_WITH_SLEPC="$(usex slepc)"
-		-DDEAL_II_WITH_SUNDIALS="$(usex sundials)"
-		-DDEAL_II_WITH_SYMENGINE="$(usex symengine)"
-		-DDEAL_II_WITH_UMFPACK="$(usex sparse)"
-		-DBUILD_SHARED_LIBS="$(usex !static-libs)"
-		-DDEAL_II_PREFER_STATIC_LIBS="$(usex static-libs)"
-		-DDEAL_II_WITH_THREADS="$(usex tbb)"
-		-DDEAL_II_WITH_TRILINOS="$(usex trilinos)"
-	)
-
-	# Do a little dance for purely cosmetic "QA" reasons.
-	use opencascade && mycmakeargs+=( -DOPENCASCADE_DIR="${CASROOT}" )
-
-	# Do a little dance for purely cosmetic "QA" reasons. The build system
-	# does query for the highest instruction set first and skips the other
-	# variables if a "higher" variant is set
-	if use cpu_flags_x86_avx512f; then
-		mycmakeargs+=( -DDEAL_II_HAVE_AVX512=yes )
-	elif use cpu_flags_x86_avx; then
-		mycmakeargs+=( -DDEAL_II_HAVE_AVX=yes )
-	elif use cpu_flags_x86_avx; then
-		mycmakeargs+=( -DDEAL_II_HAVE_SSE2=yes )
-	fi
-
-	cmake-utils_src_configure
-}
-
-src_install() {
-	if use doc && [[ ${PV} != *9999* ]]; then
-		# copy missing images to the build directory:
-		cp -r "${WORKDIR}"/doc/doxygen/deal.II/images \
-			"${BUILD_DIR}"/doc/doxygen/deal.II || die
-		# replace links:
-		sed -i \
-			's#"http://www.dealii.org/images/steps/developer/\(step-.*\)"#"images/\1"#g' \
-			"${BUILD_DIR}"/doc/doxygen/deal.II/step_*.html || die "sed failed"
-	fi
-	cmake-utils_src_install
-
-	# decompress the installed example sources:
-	use examples && docompress -x /usr/share/doc/${PF}/examples
-}
diff --git a/sci-libs/dealii/files/dealii-9.2.0-fix-boost-include-file.patch b/sci-libs/dealii/files/dealii-9.2.0-fix-boost-include-file.patch
deleted file mode 100644
index 9fc6365d01c7..000000000000
--- a/sci-libs/dealii/files/dealii-9.2.0-fix-boost-include-file.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-From 9c1a580139f557433a226da437382b3f4307f7c8 Mon Sep 17 00:00:00 2001
-From: Luca Heltai <luca.heltai@sissa.it>
-Date: Wed, 30 Dec 2020 09:54:02 +0100
-Subject: [PATCH] Fix boost include file.
-
----
- source/fe/mapping.cc | 2 ++
- 1 file changed, 2 insertions(+)
-
-diff --git a/source/fe/mapping.cc b/source/fe/mapping.cc
-index 288a9debcb..4ef3ef7714 100644
---- a/source/fe/mapping.cc
-+++ b/source/fe/mapping.cc
-@@ -20,6 +20,8 @@
- 
- #include <deal.II/grid/tria.h>
- 
-+#include <boost/geometry.hpp>
-+
- DEAL_II_NAMESPACE_OPEN
- 
- 
--- 
-2.26.3
-
diff --git a/sci-libs/dealii/metadata.xml b/sci-libs/dealii/metadata.xml
index cfcb25d9e502..6bb4348a7cda 100644
--- a/sci-libs/dealii/metadata.xml
+++ b/sci-libs/dealii/metadata.xml
@@ -28,12 +28,10 @@ and extra output. If you want to get meaningful backtraces see
 		<flag name="opencascade">Add support for opencascade (<pkg>sci-libs/opencascade</pkg>)</flag>
 		<flag name="p4est">Add support for p4est (<pkg>sci-libs/p4est</pkg>)</flag>
 		<flag name="petsc">Add support for petsc (<pkg>sci-mathematics/petsc</pkg>)</flag>
-		<flag name="nanoflann">Adds support for nanoflann (<pkg>sci-libs/nanoflann</pkg>)</flag>
 		<flag name="scalapack">Add support for ScaLAPACK (<pkg>sci-libs/scalapack</pkg>)</flag>
 		<flag name="slepc">Add support for slepc (<pkg>sci-mathematics/slepc</pkg>)</flag>
 		<flag name="sparse">Add support for suitesparse (<pkg>sci-libs/suitesparse</pkg>)</flag>
 		<flag name="symengine">Add support for symengine (<pkg>sci-libs/symengine</pkg>)</flag>
-		<flag name="tbb">Add threading support with the help of the tbb library (<pkg>dev-cpp/tbb</pkg>)</flag>
 		<flag name="trilinos">Add support for trilinos (<pkg>sci-libs/trilinos</pkg>)</flag>
 		<flag name="assimp">Add support for assimp (<pkg>media-libs/assimp</pkg>)</flag>
 		<flag name="cuda">Add support for cuda (<pkg>dev-util/nvidia-cuda-sdk</pkg>)</flag>