reinit the tree, so we can have metadata

4 files changed, 360 insertions, 0 deletions

diff --git a/sci-libs/parmetis/Manifest b/sci-libs/parmetis/Manifest
new file mode 100644
index 000000000000..951dc05f3126
--- /dev/null
+++ b/sci-libs/parmetis/Manifest
@@ -0,0 +1,6 @@
+AUX parmetis-3.1.1-autotools.patch 10971 SHA256 a72047b7467f39a2058f29c3f6a7a847c58e7c0a85d6233eda7388dbd139a887 SHA512 4e0de7697391da0a49b7051f8f58d83ce4865a1cfc63dd0f6cb2085224385b2c951d0f9297f7e291a225b91ab7053a10a38f36ad369c81e2100d3298ed7b9a15 WHIRLPOOL 2dc767efca274ae3187d810ea6b9722cd1c814a8e7c31a05109746ab1a82c6603011df6d3caa209dd371ef247a587fb1b3325506b32af8d4218435d5dd17b406
+DIST ParMetis-3.2.0.tar.gz 5291841 SHA256 35e8b869d70b6478e0d5f4f51efba00c4783a5020ec90c6a7e7a63a56f141bde SHA512 be7e5affa6ed687c7e8cbef51c5f4838e6302aa7632796f337ed079f15361569d77aa73fc61b876b5c9973e974575571fd1e3e6c73505480b1ecdb7cf801a0d0 WHIRLPOOL a67356fa49780167be929ef393cd8f5168d7f8276c9c2ba4932dd382c6c45c7a23b53085df18be05fbdb2764d06465b82f2f8d8a15bfbf5a0ef8f50321fd5237
+EBUILD parmetis-3.2.0.ebuild 867 SHA256 ad21d711741881697dde00d4b7fb5c8032f0a3b0337256e072867f01ee843f6c SHA512 d7d4ba4be5f372187796ac6c6d9c80a342b54bb7a01034d84676eca9cff2e88f4cda9c4b6170560faa342038b94616a9444690fa13472372cca48c964feaa0ef WHIRLPOOL 7432e5bca813a7e6ca9af191d13d39edf0a8ed648d6531e95eb11758746cb523aa197ce0b1989a73020a86c421c5262afc85212643b9376964eb8c9208d50e60
+MISC ChangeLog 2471 SHA256 fd0d06acee7ee0d7ef47b897fc4ac6f8398b32dab1813a016d16a63719c92b83 SHA512 5e85642ff71f33505fea17e183650ea74b1114985b98b0abbcef353eb69717f1c2640df84ce4593b0b7adaaed03fe648e23fe9e1c60e1b233f90ff1cea11c8dd WHIRLPOOL 3aab019ff7219fe28754d226389e968612b7cb94d0e4e597a96568a4d710471dc80ccdfc85efcf324af113e218e770832d72ce064b24c5ae4a2cc03977a74744
+MISC ChangeLog-2015 2074 SHA256 6b21091475f6d73cb939c365f24148bb953196eec3ca0542208f34882ca8108e SHA512 7e48b087e53d45d1b53117e9e7ddd75255bd4051d66b9afabd6978f26f697ee0960daee0529d3a2e5d8cfe0c023c3082afc6ae6d4f2fbae7d191b16deb05b7cd WHIRLPOOL 75988303381a9e051bb657956a6be7da1cda0075caa7f93216b3332a0fb7147da1c698ec92c7dcab5a86200687de3323ca52c126b3f6a687047d4b54a08c6d68
+MISC metadata.xml 672 SHA256 be817b2935ac883a9e0d0351332357a9ac8d4057308f2106cede501f41db914a SHA512 1fe20c227ceb9ee6d52207ebc6eb3771f980204a4dcd5842ca3f1fc2accfdc24ccb9c6097bb1211b766ea24ff8a16c1bab09cf9f2f01d916d3688885eb5a9ff0 WHIRLPOOL e38276ab7dfcc8c435125ae4d2152ba913b072d1f7deb9671072f148b1b9076f89b1c33e1b690d73662cad74dd339478e9eea30fb09a220d48204f1bde2cee09
diff --git a/sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch b/sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch
new file mode 100644
index 000000000000..d38a2f7575cf
--- /dev/null
+++ b/sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch
@@ -0,0 +1,298 @@
+--- configure.ac	1970-01-01 01:00:00.000000000 +0100
++++ configure.ac	2009-03-14 11:37:58.804041439 +0000
+@@ -0,0 +1,18 @@
++# -*- Autoconf -*-
++AC_PREREQ(2.59)
++AC_INIT(parmetis, 3.1.1, karypis@cs.umn.edu)
++AM_INIT_AUTOMAKE([foreign])
++AC_CONFIG_HEADER([config.h])
++AC_PROG_INSTALL
++AC_PROG_LIBTOOL
++AC_CHECK_LIB(m, sqrt)
++sinclude(ax_mpi.m4)
++AC_LANG_PUSH([C])
++AX_MPI([], AC_MSG_ERROR([could not compile an mpi test program]))
++AC_CONFIG_FILES([Makefile 
++		 metis.pc
++		 parmetis.pc
++		 ParMETISLib/Makefile
++		 METISLib/Makefile
++		 Programs/Makefile])
++AC_OUTPUT
+--- Makefile.am	1970-01-01 01:00:00.000000000 +0100
++++ Makefile.am	2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,5 @@
++SUBDIRS = METISLib ParMETISLib Programs
++EXTRA_DIST = CHANGES VERSION parmetis.pc.in metis.pc.in
++include_HEADERS = parmetis.h
++pkgconfigdir = $(libdir)/pkgconfig
++pkgconfig_DATA = metis.pc parmetis.pc
+--- METISLib/Makefile.am	1970-01-01 01:00:00.000000000 +0100
++++ METISLib/Makefile.am	2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,18 @@
++pkginclude_HEADERS = defs.h macros.h metis.h proto.h rename.h \
++	stdheaders.h struct.h
++pkgincludedir = $(includedir)/metis
++
++lib_LTLIBRARIES = libmetis.la
++libmetis_la_SOURCES = \
++	coarsen.c fm.c initpart.c match.c ccgraph.c \
++	pmetis.c pqueue.c refine.c util.c timing.c debug.c \
++	bucketsort.c graph.c stat.c kmetis.c kwayrefine.c \
++	kwayfm.c balance.c ometis.c srefine.c sfm.c separator.c \
++	mincover.c mmd.c mesh.c meshpart.c frename.c fortran.c \
++	myqsort.c compress.c parmetis.c estmem.c \
++	mpmetis.c mcoarsen.c mmatch.c minitpart.c mbalance.c \
++	mutil.c mkmetis.c mkwayrefine.c mkwayfmh.c \
++	mrefine2.c minitpart2.c mbalance2.c mfm2.c \
++	kvmetis.c kwayvolrefine.c kwayvolfm.c subdomains.c \
++	mfm.c memory.c mrefine.c checkgraph.c
++libmetis_la_LDFLAGS = -no-undefined -version-info 4:1:0 
+--- metis.pc.in	1970-01-01 01:00:00.000000000 +0100
++++ metis.pc.in	2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,10 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: METIS
++Description: Software for unstructured graph partitioning
++Version: @VERSION@
++Libs: -L${libdir} -lmetis
++Cflags: -I${includedir}/metis
+--- ParMETISLib/Makefile.am	1970-01-01 01:00:00.000000000 +0100
++++ ParMETISLib/Makefile.am	2009-03-14 11:57:08.006017954 +0000
+@@ -0,0 +1,21 @@
++pkginclude_HEADERS = defs.h macros.h parmetislib.h proto.h \
++	rename.h stdheaders.h struct.h
++pkgincludedir = $(includedir)/parmetis
++
++lib_LTLIBRARIES = libparmetis.la
++libparmetis_la_SOURCES = \
++	comm.c util.c debug.c setup.c grsetup.c timer.c \
++	node_refine.c initmsection.c order.c \
++	xyzpart.c pspases.c frename.c \
++	iintsort.c iidxsort.c ikeysort.c ikeyvalsort.c \
++	kmetis.c gkmetis.c ometis.c \
++	initpart.c match.c \
++	kwayfm.c kwayrefine.c kwaybalance.c \
++	remap.c stat.c fpqueue.c \
++	ametis.c rmetis.c lmatch.c initbalance.c \
++	mdiffusion.c diffutil.c wave.c \
++	csrmatch.c redomylink.c balancemylink.c \
++	selectq.c akwayfm.c serial.c move.c \
++	mmetis.c mesh.c memory.c weird.c backcompat.c
++libparmetis_la_LDFLAGS = -no-undefined -version-info 3:1:1
++libparmetis_la_LIBADD = @MPILIBS@ $(top_builddir)/METISLib/libmetis.la
+--- parmetis.pc.in	1970-01-01 01:00:00.000000000 +0100
++++ parmetis.pc.in	2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,11 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: ParMETIS
++Description: Software for parallel (mpi) unstructured graph partitioning
++Version: @VERSION@
++Requires: metis
++Libs: -L${libdir} -lparmetis
++Cflags: -I${includedir}
+--- Programs/Makefile.am	1970-01-01 01:00:00.000000000 +0100
++++ Programs/Makefile.am	2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,13 @@
++AM_CPPFLAGS = -I$(top_srcdir)/ParMETISLib
++LDADD = $(top_builddir)/METISLib/libmetis.la \
++	$(top_builddir)/ParMETISLib/libparmetis.la
++
++check_PROGRAMS = ptest mtest
++ptest_SOURCES = ptest.c io.c adaptgraph.c
++mtest_SOURCES = mtest.c io.c
++
++MPIRUN = mpirun -np 2
++
++check-local: $(check_PROGRAMS)
++	$(MPIRUN) ptest ../Graphs/rotor.graph
++	$(MPIRUN) mtest ../Graphs/bricks.hex3d 2
+--- ax_mpi.m4	1970-01-01 01:00:00.000000000 +0100
++++ ax_mpi.m4	2010-01-20 20:33:15.000000000 +0000
+@@ -0,0 +1,178 @@
++# ===========================================================================
++#             http://www.nongnu.org/autoconf-archive/ax_mpi.html
++# ===========================================================================
++#
++# SYNOPSIS
++#
++#   AX_MPI([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
++#
++# DESCRIPTION
++#
++#   This macro tries to find out how to compile programs that use MPI
++#   (Message Passing Interface), a standard API for parallel process
++#   communication (see http://www-unix.mcs.anl.gov/mpi/)
++#
++#   On success, it sets the MPICC, MPICXX, MPIF77, or MPIFC output variable
++#   to the name of the MPI compiler, depending upon the current language.
++#   (This may just be $CC/$CXX/$F77/$FC, but is more often something like
++#   mpicc/mpiCC/mpif77/mpif90.) It also sets MPILIBS to any libraries that
++#   are needed for linking MPI (e.g. -lmpi or -lfmpi, if a special
++#   MPICC/MPICXX/MPIF77/MPIFC was not found).
++#
++#   If you want to compile everything with MPI, you should set:
++#
++#     CC="MPICC" #OR# CXX="MPICXX" #OR# F77="MPIF77" #OR# FC="MPIFC"
++#     LIBS="$MPILIBS $LIBS"
++#
++#   NOTE: The above assumes that you will use $CC (or whatever) for linking
++#   as well as for compiling. (This is the default for automake and most
++#   Makefiles.)
++#
++#   The user can force a particular library/compiler by setting the
++#   MPICC/MPICXX/MPIF77/MPIFC and/or MPILIBS environment variables.
++#
++#   ACTION-IF-FOUND is a list of shell commands to run if an MPI library is
++#   found, and ACTION-IF-NOT-FOUND is a list of commands to run if it is not
++#   found. If ACTION-IF-FOUND is not specified, the default action will
++#   define HAVE_MPI.
++#
++# LICENSE
++#
++#   Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
++#   Copyright (c) 2008 Julian C. Cummings <cummings@cacr.caltech.edu>
++#
++#   This program is free software: you can redistribute it and/or modify it
++#   under the terms of the GNU General Public License as published by the
++#   Free Software Foundation, either version 3 of the License, or (at your
++#   option) any later version.
++#
++#   This program is distributed in the hope that it will be useful, but
++#   WITHOUT ANY WARRANTY; without even the implied warranty of
++#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
++#   Public License for more details.
++#
++#   You should have received a copy of the GNU General Public License along
++#   with this program. If not, see <http://www.gnu.org/licenses/>.
++#
++#   As a special exception, the respective Autoconf Macro's copyright owner
++#   gives unlimited permission to copy, distribute and modify the configure
++#   scripts that are the output of Autoconf when processing the Macro. You
++#   need not follow the terms of the GNU General Public License when using
++#   or distributing such scripts, even though portions of the text of the
++#   Macro appear in them. The GNU General Public License (GPL) does govern
++#   all other use of the material that constitutes the Autoconf Macro.
++#
++#   This special exception to the GPL applies to versions of the Autoconf
++#   Macro released by the Autoconf Archive. When you make and distribute a
++#   modified version of the Autoconf Macro, you may extend this special
++#   exception to the GPL to apply to your modified version as well.
++
++AU_ALIAS([ACX_MPI], [AX_MPI])
++AC_DEFUN([AX_MPI], [
++AC_PREREQ(2.50) dnl for AC_LANG_CASE
++
++AC_LANG_CASE([C], [
++	AC_REQUIRE([AC_PROG_CC])
++	AC_ARG_VAR(MPICC,[MPI C compiler command])
++	AC_CHECK_PROGS(MPICC, mpicc hcc mpxlc_r mpxlc mpcc cmpicc, $CC)
++	ax_mpi_save_CC="$CC"
++	CC="$MPICC"
++	AC_SUBST(MPICC)
++],
++[C++], [
++	AC_REQUIRE([AC_PROG_CXX])
++	AC_ARG_VAR(MPICXX,[MPI C++ compiler command])
++	AC_CHECK_PROGS(MPICXX, mpic++ mpicxx mpiCC hcp mpxlC_r mpxlC mpCC cmpic++, $CXX)
++	ax_mpi_save_CXX="$CXX"
++	CXX="$MPICXX"
++	AC_SUBST(MPICXX)
++],
++[Fortran 77], [
++	AC_REQUIRE([AC_PROG_F77])
++	AC_ARG_VAR(MPIF77,[MPI Fortran 77 compiler command])
++	AC_CHECK_PROGS(MPIF77, mpif77 hf77 mpxlf_r mpxlf mpf77 cmpifc, $F77)
++	ax_mpi_save_F77="$F77"
++	F77="$MPIF77"
++	AC_SUBST(MPIF77)
++],
++[Fortran], [
++	AC_REQUIRE([AC_PROG_FC])
++	AC_ARG_VAR(MPIFC,[MPI Fortran compiler command])
++	AC_CHECK_PROGS(MPIFC, mpif90 mpxlf95_r mpxlf90_r mpxlf95 mpxlf90 mpf90 cmpif90c, $FC)
++	ax_mpi_save_FC="$FC"
++	FC="$MPIFC"
++	AC_SUBST(MPIFC)
++])
++
++if test x = x"$MPILIBS"; then
++	AC_LANG_CASE([C], [AC_CHECK_FUNC(MPI_Init, [MPILIBS=" "])],
++		[C++], [AC_CHECK_FUNC(MPI_Init, [MPILIBS=" "])],
++		[Fortran 77], [AC_MSG_CHECKING([for MPI_Init])
++			AC_LINK_IFELSE([AC_LANG_PROGRAM([],[      call MPI_Init])],[MPILIBS=" "
++				AC_MSG_RESULT(yes)], [AC_MSG_RESULT(no)])],
++		[Fortran], [AC_MSG_CHECKING([for MPI_Init])
++			AC_LINK_IFELSE([AC_LANG_PROGRAM([],[      call MPI_Init])],[MPILIBS=" "
++				AC_MSG_RESULT(yes)], [AC_MSG_RESULT(no)])])
++fi
++AC_LANG_CASE([Fortran 77], [
++	if test x = x"$MPILIBS"; then
++		AC_CHECK_LIB(fmpi, MPI_Init, [MPILIBS="-lfmpi"])
++	fi
++	if test x = x"$MPILIBS"; then
++		AC_CHECK_LIB(fmpich, MPI_Init, [MPILIBS="-lfmpich"])
++	fi
++],
++[Fortran], [
++	if test x = x"$MPILIBS"; then
++		AC_CHECK_LIB(fmpi, MPI_Init, [MPILIBS="-lfmpi"])
++	fi
++	if test x = x"$MPILIBS"; then
++		AC_CHECK_LIB(mpichf90, MPI_Init, [MPILIBS="-lmpichf90"])
++	fi
++])
++if test x = x"$MPILIBS"; then
++	AC_CHECK_LIB(mpi, MPI_Init, [MPILIBS="-lmpi"])
++fi
++if test x = x"$MPILIBS"; then
++	AC_CHECK_LIB(mpich, MPI_Init, [MPILIBS="-lmpich"])
++fi
++
++dnl We have to use AC_TRY_COMPILE and not AC_CHECK_HEADER because the
++dnl latter uses $CPP, not $CC (which may be mpicc).
++AC_LANG_CASE([C], [if test x != x"$MPILIBS"; then
++	AC_MSG_CHECKING([for mpi.h])
++	AC_TRY_COMPILE([#include <mpi.h>],[],[AC_MSG_RESULT(yes)], [MPILIBS=""
++		AC_MSG_RESULT(no)])
++fi],
++[C++], [if test x != x"$MPILIBS"; then
++	AC_MSG_CHECKING([for mpi.h])
++	AC_TRY_COMPILE([#include <mpi.h>],[],[AC_MSG_RESULT(yes)], [MPILIBS=""
++		AC_MSG_RESULT(no)])
++fi],
++[Fortran 77], [if test x != x"$MPILIBS"; then
++	AC_MSG_CHECKING([for mpif.h])
++	AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],[      include 'mpif.h'])],[AC_MSG_RESULT(yes)], [MPILIBS=""
++		AC_MSG_RESULT(no)])
++fi],
++[Fortran], [if test x != x"$MPILIBS"; then
++	AC_MSG_CHECKING([for mpif.h])
++	AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],[      include 'mpif.h'])],[AC_MSG_RESULT(yes)], [MPILIBS=""
++		AC_MSG_RESULT(no)])
++fi])
++
++AC_LANG_CASE([C], [CC="$ax_mpi_save_CC"],
++	[C++], [CXX="$ax_mpi_save_CXX"],
++	[Fortran 77], [F77="$ax_mpi_save_F77"],
++	[Fortran], [FC="$ax_mpi_save_FC"])
++
++AC_SUBST(MPILIBS)
++
++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
++if test x = x"$MPILIBS"; then
++        $2
++        :
++else
++        ifelse([$1],,[AC_DEFINE(HAVE_MPI,1,[Define if you have the MPI library.])],[$1])
++        :
++fi
++])dnl AX_MPI
diff --git a/sci-libs/parmetis/metadata.xml b/sci-libs/parmetis/metadata.xml
new file mode 100644
index 000000000000..744c4ff57d0c
--- /dev/null
+++ b/sci-libs/parmetis/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci@gentoo.org</email>
+    <name>Gentoo Science Project</name>
+  </maintainer>
+  <longdescription lang="en">
+  ParMETIS is an MPI-based parallel library that implements a variety
+  of algorithms for partitioning unstructured graphs and for computing
+  fill-reducing orderings of sparse matrices. ParMETIS extends the
+  functionality provided by METIS and includes routines that are
+  especially suited for parallel AMR computations and large scale
+  numerical simulations.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-libs/parmetis/parmetis-3.2.0.ebuild b/sci-libs/parmetis/parmetis-3.2.0.ebuild
new file mode 100644
index 000000000000..7d656c03b719
--- /dev/null
+++ b/sci-libs/parmetis/parmetis-3.2.0.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit eutils autotools
+
+MYP=ParMetis-${PV}
+
+DESCRIPTION="Parallel graph partitioner"
+HOMEPAGE="http://www-users.cs.umn.edu/~karypis/metis/parmetis/"
+SRC_URI="http://glaros.dtc.umn.edu/gkhome/fetch/sw/${PN}/OLD/${MYP}.tar.gz"
+
+SLOT="0"
+LICENSE="free-noncomm"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+IUSE="doc static-libs"
+
+DEPEND="virtual/mpi"
+RDEPEND="${DEPEND}
+	!sci-libs/metis"
+
+S="${WORKDIR}/${MYP}"
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PN}-3.1.1-autotools.patch
+	sed -i -e "s/3.1.1/${PV}/" configure.ac || die
+	sed -i -e 's/order.c//' -e 's/lmatch.c//' ParMETISLib/Makefile.am || die
+	eautoreconf
+	export CC=mpicc
+}
+
+src_configure() {
+	econf $(use_enable static-libs static)
+}
+
+src_install() {
+	default
+	use doc && dodoc Manual/*.pdf
+}