gentoo resync : 20.12.2017

6 files changed, 427 insertions, 164 deletions

diff --git a/sci-libs/parmgridgen/Manifest b/sci-libs/parmgridgen/Manifest
index 99bcb6ddac02..e71777b60788 100644
--- a/sci-libs/parmgridgen/Manifest
+++ b/sci-libs/parmgridgen/Manifest
@@ -1,5 +1,8 @@
-AUX parmgridgen-1.0-as-needed.patch 985 BLAKE2B 5ac23ebbd9345be4c1b74ddc49ed15f5d537f9785ad5ee833f6faa8a05c15dbcae782d03359e95666ab1f2f5b9f3204df5c19dde5ce6d7415357015221ac7f96 SHA512 3a7a2e854338253934a9e8a05f157465696b7e0307ea30a5046a710831910087937271a0818df325367d3ad65a544b971cd249f61d59d77c125cb3520934d0b5
-AUX parmgridgen-1.0-autotools.patch 14205 BLAKE2B 8b4bd90d4dff06edb5e3cc362cf4a66f12a94abba687b74862691c65c81a9720f6ad8fdf51eeae56294377679a589278f0401e0fe3f65ca089becdd557214520 SHA512 cfb39c82cc40dc034b125201cc75f825ae224eda7a0d3ac2ab460c7bf8fd194cc5a01742f869970d987613a35e327da5a107b161e0bd6c6612f189244bd01da5
-DIST ParMGridGen-1.0.tar.gz 2623528 SHA256 62cdb6e48cfc59124e5d5d360c2841e0fc2feecafe65bda110b74e942740b395 SHA512 e12ea3c923dd900c92ba4f2639daacc6c3596c5ea3c8d366b269c4c21247b10e6400c384321cfc65b486e4f8217dcd43f43eee27570b1fe1375deb02e255cb16 WHIRLPOOL a78187a71e04d15b0260e411c713b190c36a68931442ff04e537f7efbbb01ddfdb58c09835ac341dc6d7f3826fc855f64e8b32ea24d41d40b77c438a57db207e
+AUX parmgridgen-1.0-as-needed.patch 985 BLAKE2B 8e01377fd8fa74af161a2fd9582d1faa16915e4a221ba51dc43f521b821d362063ca6c84ea808bdd63acf849515bd8951a1b943b8c73b6164a89f4adf59a5ce9 SHA512 1fabedd43c4aa0bd58fcd8815fbe13d9a5ff6e7dfacee5f4858a46f1ea5125cc628689ed66c111b05e388ed2f04b602ed09b6c9cc9d6e3512b9f612242ca2cbd
+AUX parmgridgen-1.0-autotools.patch 15980 BLAKE2B 17ad43d00cc80bc699e8434b2c5d8801dc8c0d22217a0207956a935d84497ab29a75e919895490662d11ac9a409d3d37c2e72f2117166c8a3f01db7768161f30 SHA512 d12a553ccf76d1e142d5cbf7687d7e38050684b2f86aeafa812447dae5d629f77000d6c95a87d641683677d08ca5061ce047e0e7071aae8558b172db6f36ce37
+AUX parmgridgen-1.0-format-security.patch 1338 BLAKE2B 2b857f31ecb59afc9bb52272283dc6c7db9915e7fa3c9f4386abdb21f0f3965b099f360e843c164fedcecf4c090ef37d056c2959d07983be696324edc862a0db SHA512 5f7e3e2417f6764e8faa4c5db89d317ea741be14f3051ac3ba1f99b31cc48fab534d14f2c2d2f6fc240f5352c1f82c31fdecc3eea5ca99812fbc7fd332c24033
+AUX parmgridgen-1.0-impl-fct.patch 2207 BLAKE2B c9665f969730628a8811f24b5c5d8ce43cbc5c202ec4d277bdf770760f0cbdeaf5a4cef7ac94a52b3d04666b4e48911e39e49c917b40d56fe1344cfa82a76f2f SHA512 078690430ffefcc56a3f84942ee49e06663b1be995ba8be5755930e5bf1eb76fdaaf27eb1756474911ad9ada2250f3bf3ecfff9de240e2142cd5ea46083f001d
+DIST ParMGridGen-1.0.tar.gz 2623528 BLAKE2B 982e6d7a0df3b9c101993ecf397c75f10d0cf390914ccca6f02efbe5ae190c65bc31e5770bd57ff375a8e3a3aab878c56da50af4f3e5f0f422044137d90ddff8 SHA512 e12ea3c923dd900c92ba4f2639daacc6c3596c5ea3c8d366b269c4c21247b10e6400c384321cfc65b486e4f8217dcd43f43eee27570b1fe1375deb02e255cb16
+EBUILD parmgridgen-1.0-r1.ebuild 883 BLAKE2B bb3725e35203250496766d9bc23e281bc200bb1b5cb2714ce5a53b8318f0d37341a35dde2507870153c4c6e2668fcd75dc8713e6fa117cb8e80279fee047f426 SHA512 4a6c84be28ad08d6b3c071cf7eb3c9ef6ba0678b2e75aba58e9ff910dd6c50d8d9eba67f5b7e153aabf3362dbdf7d8edacdd4307f115b035873fdf2a88893381
 EBUILD parmgridgen-1.0.ebuild 753 BLAKE2B 69c013bc95f832e473f30ba46f62c32e884ac7bbb86e7ad28cabc012aef852aab5ff0cec59f0e7f40ebaa9fa3773e545c83cb4fb520cc9bf0a09ac0f3d6f113b SHA512 147c3676e89ebc6b7130e9e74ea3e4bf39f808c6a44d6cc7840d133c704e8fd84b9ee6eb4d7a7faa154512dda7394d6998f5dfde7ca68ebb58ea741444f2778f
 MISC metadata.xml 247 BLAKE2B 5a20af3c9732ef7dba68131a08988652f5c93a6d186a82c4deb1bb9c06dc3ae73152a0d241cc346637f7b11caf4676da43301ba596c67b66669535e71db0b03e SHA512 29cf52c16b0cce69899d9c2da8acd9144b7d760442aa323b854dceadb42459e009545193b1df7911ac2241b59f4819b4a6bb1d206d6f57953f770031433bb6b7
diff --git a/sci-libs/parmgridgen/files/parmgridgen-1.0-as-needed.patch b/sci-libs/parmgridgen/files/parmgridgen-1.0-as-needed.patch
index 4f9addda4228..3b378552fab7 100644
--- a/sci-libs/parmgridgen/files/parmgridgen-1.0-as-needed.patch
+++ b/sci-libs/parmgridgen/files/parmgridgen-1.0-as-needed.patch
@@ -1,13 +1,13 @@
---- MGridGen/Lib/Makefile.am.old	2009-03-10 09:28:13.000000000 +0200
-+++ MGridGen/Lib/Makefile.am	2009-03-10 09:28:07.000000000 +0200
+--- a/MGridGen/Lib/Makefile.am	2009-03-10 09:28:13.000000000 +0200
++++ b/MGridGen/Lib/Makefile.am	2009-03-10 09:28:07.000000000 +0200
 @@ -8,3 +8,5 @@
  lib_LTLIBRARIES = libMGridGen.la
  libMGridGen_la_SOURCES = aratio.c  coarsen.c  kwayfm.c  match.c  merge.c  mgridgen.c  refine.c  setup.c
  libMGridGen_la_LDFLAGS = -no-undefined -export-dynamic -version-info 1:0:0
 +
 +libMGridGen_la_LIBADD = ../IMlib/libIMlib.la
---- ParMGridGen/ParLib/Makefile.am.old	2009-03-10 09:31:43.000000000 +0200
-+++ ParMGridGen/ParLib/Makefile.am	2009-03-10 09:35:13.000000000 +0200
+--- a/ParMGridGen/ParLib/Makefile.am	2009-03-10 09:31:43.000000000 +0200
++++ b/ParMGridGen/ParLib/Makefile.am	2009-03-10 09:35:13.000000000 +0200
 @@ -8,3 +8,8 @@
  lib_LTLIBRARIES = libParMGridGen.la
  libParMGridGen_la_SOURCES = comm.c  debug.c  grsetup.c  ikeysort.c  memory.c  move.c  parmgridgen.c  setup.c  util.c
diff --git a/sci-libs/parmgridgen/files/parmgridgen-1.0-autotools.patch b/sci-libs/parmgridgen/files/parmgridgen-1.0-autotools.patch
index 5a5f2369a3a8..1615f2232e5d 100644
--- a/sci-libs/parmgridgen/files/parmgridgen-1.0-autotools.patch
+++ b/sci-libs/parmgridgen/files/parmgridgen-1.0-autotools.patch
@@ -1,23 +1,192 @@
---- ParMGridGen-1.0-src/mgridgen.h	2001-11-09 00:41:22.000000000 +0100
-+++ ParMGridGen-1.0/mgridgen.h	1970-01-01 01:00:00.000000000 +0100
-@@ -1,7 +0,0 @@
--typedef int idxtype;
--typedef double realtype;
--
--
--void MGridGen(int, idxtype *, realtype *, realtype *, idxtype *, realtype *,
--              int, int, int *, int *, int *, idxtype *);
--
---- ParMGridGen-1.0-src/parmgridgen.h	2001-12-06 00:05:37.000000000 +0100
-+++ ParMGridGen-1.0/parmgridgen.h	1970-01-01 01:00:00.000000000 +0100
-@@ -1,5 +0,0 @@
--typedef int idxtype;
--typedef double realtype;
--
--void ParMGridGen(idxtype *, idxtype *, realtype *, realtype *, idxtype *,
--                 realtype *, int *, int, int, int *, idxtype *, MPI_Comm *);
---- ParMGridGen-1.0-src/acx_mpi.m4	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/acx_mpi.m4	2008-07-19 22:10:53.000000000 +0200
+From bbed136f01cd384bc4083aaca1761be9ee2d2a79 Mon Sep 17 00:00:00 2001
+From: Justin Lecher <jlec@gentoo.org>
+Date: Mon, 18 Dec 2017 18:30:09 +0000
+Subject: [PATCH] autotools support
+
+Signed-off-by: Justin Lecher <jlec@gentoo.org>
+---
+ MGridGen/IMlib/Makefile.am                         |   8 +
+ MGridGen/Lib/Makefile.am                           |  10 ++
+ MGridGen/Makefile.am                               |   4 +
+ MGridGen/Programs/Makefile.am                      |   7 +
+ Makefile.am                                        |   7 +
+ ParMGridGen/IMParMetis-2.0/Makefile.am             |   4 +
+ ParMGridGen/IMParMetis-2.0/ParMETISLib/Makefile.am |   8 +
+ ParMGridGen/Makefile.am                            |   4 +
+ ParMGridGen/ParLib/Makefile.am                     |  10 ++
+ ParMGridGen/Programs/Makefile.am                   |  21 +++
+ acx_mpi.m4                                         | 181 +++++++++++++++++++++
+ configure.ac                                       |  24 +++
+ mgridgen.h                                         |   7 -
+ mgridgen.pc.in                                     |  10 ++
+ parmgridgen.h                                      |   5 -
+ parmgridgen.pc.in                                  |  10 ++
+ 16 files changed, 308 insertions(+), 12 deletions(-)
+ create mode 100644 MGridGen/IMlib/Makefile.am
+ create mode 100644 MGridGen/Lib/Makefile.am
+ create mode 100644 MGridGen/Makefile.am
+ create mode 100644 MGridGen/Programs/Makefile.am
+ create mode 100644 Makefile.am
+ create mode 100644 ParMGridGen/IMParMetis-2.0/Makefile.am
+ create mode 100644 ParMGridGen/IMParMetis-2.0/ParMETISLib/Makefile.am
+ create mode 100644 ParMGridGen/Makefile.am
+ create mode 100644 ParMGridGen/ParLib/Makefile.am
+ create mode 100644 ParMGridGen/Programs/Makefile.am
+ create mode 100644 acx_mpi.m4
+ create mode 100644 configure.ac
+ delete mode 100644 mgridgen.h
+ create mode 100644 mgridgen.pc.in
+ delete mode 100644 parmgridgen.h
+ create mode 100644 parmgridgen.pc.in
+
+diff --git a/MGridGen/IMlib/Makefile.am b/MGridGen/IMlib/Makefile.am
+new file mode 100644
+index 0000000..008c259
+--- /dev/null
++++ b/MGridGen/IMlib/Makefile.am
+@@ -0,0 +1,8 @@
++## Source directory
++
++pkginclude_HEADERS = IMlib.h
++pkgincludedir = $(includedir)/mgridgen
++
++lib_LTLIBRARIES = libIMlib.la
++libIMlib_la_SOURCES = blas.c  dfkeysort.c  dkeysort.c  file.c  ifkeysort.c  ifloatsort.c  iintsort.c  ikeysort.c  memory.c  sort.c  util.c
++libIMlib_la_LDFLAGS = -no-undefined -export-dynamic -version-info 1:0:0
+diff --git a/MGridGen/Lib/Makefile.am b/MGridGen/Lib/Makefile.am
+new file mode 100644
+index 0000000..39946b0
+--- /dev/null
++++ b/MGridGen/Lib/Makefile.am
+@@ -0,0 +1,10 @@
++## Source directory
++
++INCLUDES = -I../IMlib
++
++pkginclude_HEADERS = defs.h  macros.h  mgridgen.h  proto.h  struct.h
++pkgincludedir = $(includedir)/mgridgen
++
++lib_LTLIBRARIES = libMGridGen.la
++libMGridGen_la_SOURCES = aratio.c  coarsen.c  kwayfm.c  match.c  merge.c  mgridgen.c  refine.c  setup.c
++libMGridGen_la_LDFLAGS = -no-undefined -export-dynamic -version-info 1:0:0
+diff --git a/MGridGen/Makefile.am b/MGridGen/Makefile.am
+new file mode 100644
+index 0000000..040d716
+--- /dev/null
++++ b/MGridGen/Makefile.am
+@@ -0,0 +1,4 @@
++## middle directory
++
++#Build in these directories:
++SUBDIRS= IMlib Lib Programs
+diff --git a/MGridGen/Programs/Makefile.am b/MGridGen/Programs/Makefile.am
+new file mode 100644
+index 0000000..3fe9ba5
+--- /dev/null
++++ b/MGridGen/Programs/Makefile.am
+@@ -0,0 +1,7 @@
++## Source directory
++
++INCLUDES = -I../IMlib -I../Lib
++
++bin_PROGRAMS = mgridgen
++mgridgen_SOURCES = io.c mgridgen.c
++mgridgen_LDADD = ../IMlib/libIMlib.la ../Lib/libMGridGen.la -lm
+diff --git a/Makefile.am b/Makefile.am
+new file mode 100644
+index 0000000..f97504c
+--- /dev/null
++++ b/Makefile.am
+@@ -0,0 +1,7 @@
++## top directory
++
++SUBDIRS = MGridGen ParMGridGen
++EXTRA_DIST = VERSION mgridgen.pc.in parmgridgen.pc.in
++
++pkgconfigdir = $(libdir)/pkgconfig
++pkgconfig_DATA = mgridgen.pc parmgridgen.pc
+diff --git a/ParMGridGen/IMParMetis-2.0/Makefile.am b/ParMGridGen/IMParMetis-2.0/Makefile.am
+new file mode 100644
+index 0000000..3fa93db
+--- /dev/null
++++ b/ParMGridGen/IMParMetis-2.0/Makefile.am
+@@ -0,0 +1,4 @@
++## middle directory
++
++#Build in these directories:
++SUBDIRS= ParMETISLib
+diff --git a/ParMGridGen/IMParMetis-2.0/ParMETISLib/Makefile.am b/ParMGridGen/IMParMetis-2.0/ParMETISLib/Makefile.am
+new file mode 100644
+index 0000000..c4d6e33
+--- /dev/null
++++ b/ParMGridGen/IMParMetis-2.0/ParMETISLib/Makefile.am
+@@ -0,0 +1,8 @@
++## Source directory
++
++pkginclude_HEADERS = defs.h  macros.h  parmetis.h  proto.h  rename.h  struct.h
++pkgincludedir = $(includedir)/imparmetis
++
++lib_LTLIBRARIES = libIMparmetis.la
++libIMparmetis_la_SOURCES = coarsen.c  comm.c  debug.c  diffuse.c  drivers.c  edge_refine.c  fused.c  grsetup.c  iidxsort.c  ikeysort.c  memory.c  remap.c  setup.c  timer.c  util.c  var.c
++libIMparmetis_la_LDFLAGS = -no-undefined -export-dynamic -version-info 1:0:0
+diff --git a/ParMGridGen/Makefile.am b/ParMGridGen/Makefile.am
+new file mode 100644
+index 0000000..0743f65
+--- /dev/null
++++ b/ParMGridGen/Makefile.am
+@@ -0,0 +1,4 @@
++## middle directory
++
++#Build in these directories:
++SUBDIRS= IMParMetis-2.0 ParLib Programs
+diff --git a/ParMGridGen/ParLib/Makefile.am b/ParMGridGen/ParLib/Makefile.am
+new file mode 100644
+index 0000000..78d03d9
+--- /dev/null
++++ b/ParMGridGen/ParLib/Makefile.am
+@@ -0,0 +1,10 @@
++## Source directory
++
++INCLUDES = -I$(top_builddir)/MGridGen/IMlib
++
++pkginclude_HEADERS = defs.h  macros.h  parmgridgen.h  proto.h  rename.h  struct.h
++pkgincludedir = $(includedir)/parmgridgen
++
++lib_LTLIBRARIES = libParMGridGen.la
++libParMGridGen_la_SOURCES = comm.c  debug.c  grsetup.c  ikeysort.c  memory.c  move.c  parmgridgen.c  setup.c  util.c
++libParMGridGen_la_LDFLAGS = -no-undefined -export-dynamic -version-info 1:0:0
+diff --git a/ParMGridGen/Programs/Makefile.am b/ParMGridGen/Programs/Makefile.am
+new file mode 100644
+index 0000000..0d586ee
+--- /dev/null
++++ b/ParMGridGen/Programs/Makefile.am
+@@ -0,0 +1,21 @@
++## Source directory
++
++INCLUDES = -I../ParLib -I$(top_builddir)/MGridGen/IMlib
++
++bin_PROGRAMS = parmgridgen
++parmgridgen_SOURCES = io.c  main.c  parmgridgen.c
++parmgridgen_LDADD = ../IMParMetis-2.0/ParMETISLib/libIMparmetis.la ../ParLib/libParMGridGen.la \
++	$(top_builddir)/MGridGen/IMlib/libIMlib.la $(top_builddir)/MGridGen/Lib/libMGridGen.la @MPILIBS@
++
++# AM_CPPFLAGS = -I$(top_srcdir)/ParMETISLib
++# LDADD = $(top_builddir)/METISLib/libmetis.la \
++# 	$(top_builddir)/ParMETISLib/libparmetis.la
++
++# check_PROGRAMS = parmgridgen
++# parmgridgen_SOURCES = io.c  main.c  parmgridgen.c
++
++MPIRUN = mpirun -np 4
++
++check-local: $(check_PROGRAMS)
++	$(MPIRUN) parmgridgen $(top_builddir)/Graphs/M6.metis 3 4 6 1 4 128
++
+diff --git a/acx_mpi.m4 b/acx_mpi.m4
+new file mode 100644
+index 0000000..bb2cb31
+--- /dev/null
++++ b/acx_mpi.m4
 @@ -0,0 +1,181 @@
 +# ===========================================================================
 +#                http://autoconf-archive.cryp.to/acx_mpi.html
@@ -200,34 +369,11 @@
 +        :
 +fi
 +])dnl ACX_MPI
---- ParMGridGen-1.0-src/mgridgen.pc.in	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/mgridgen.pc.in	2008-07-20 15:34:06.000000000 +0200
-@@ -0,0 +1,10 @@
-+prefix=@prefix@
-+exec_prefix=@exec_prefix@
-+libdir=@libdir@
-+includedir=@includedir@
-+
-+Name: MGridGen
-+Description: Software for generating coarse grids
-+Version: @VERSION@
-+Libs: -L${libdir} -lIMlib -lMGridGen
-+Cflags: -I${includedir}/mgridgen
---- ParMGridGen-1.0-src/parmgridgen.pc.in	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/parmgridgen.pc.in	2008-07-20 15:49:53.000000000 +0200
-@@ -0,0 +1,10 @@
-+prefix=@prefix@
-+exec_prefix=@exec_prefix@
-+libdir=@libdir@
-+includedir=@includedir@
-+
-+Name: ParMGridGen
-+Description: Software for parallel (mpi) generating coarse grids
-+Version: @VERSION@
-+Libs: -L${libdir} -lIMparmetis -lParMGridGen
-+Cflags: -I${includedir}/imparmetis -I${includedir}/parmgridgen
---- ParMGridGen-1.0-src/configure.ac	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/configure.ac	2008-07-20 16:05:45.000000000 +0200
+diff --git a/configure.ac b/configure.ac
+new file mode 100644
+index 0000000..daff95e
+--- /dev/null
++++ b/configure.ac
 @@ -0,0 +1,24 @@
 +# -*- Autoconf -*-
 +AC_PREREQ(2.61)
@@ -253,116 +399,62 @@
 +		 ParMGridGen/ParLib/Makefile
 +		 ParMGridGen/Programs/Makefile])
 +AC_OUTPUT
---- ParMGridGen-1.0-src/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/Makefile.am	2008-07-20 15:55:52.000000000 +0200
-@@ -0,0 +1,7 @@
-+## top directory
-+
-+SUBDIRS = MGridGen ParMGridGen
-+EXTRA_DIST = VERSION mgridgen.pc.in parmgridgen.pc.in
-+
-+pkgconfigdir = $(libdir)/pkgconfig
-+pkgconfig_DATA = mgridgen.pc parmgridgen.pc
---- ParMGridGen-1.0-src/MGridGen/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/MGridGen/Makefile.am	2008-07-19 22:53:47.000000000 +0200
-@@ -0,0 +1,4 @@
-+## middle directory
-+
-+#Build in these directories:
-+SUBDIRS= IMlib Lib Programs
---- ParMGridGen-1.0-src/MGridGen/IMlib/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/MGridGen/IMlib/Makefile.am	2008-07-19 22:48:10.000000000 +0200
-@@ -0,0 +1,8 @@
-+## Source directory
-+
-+pkginclude_HEADERS = IMlib.h
-+pkgincludedir = $(includedir)/mgridgen
-+
-+lib_LTLIBRARIES = libIMlib.la
-+libIMlib_la_SOURCES = blas.c  dfkeysort.c  dkeysort.c  file.c  ifkeysort.c  ifloatsort.c  iintsort.c  ikeysort.c  memory.c  sort.c  util.c
-+libIMlib_la_LDFLAGS = -no-undefined -export-dynamic -version-info 1:0:0
---- ParMGridGen-1.0-src/MGridGen/Lib/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/MGridGen/Lib/Makefile.am	2008-07-19 22:43:36.000000000 +0200
+diff --git a/mgridgen.h b/mgridgen.h
+deleted file mode 100644
+index e1bfa2e..0000000
+--- a/mgridgen.h
++++ /dev/null
+@@ -1,7 +0,0 @@
+-typedef int idxtype;
+-typedef double realtype;
+-
+-
+-void MGridGen(int, idxtype *, realtype *, realtype *, idxtype *, realtype *,
+-              int, int, int *, int *, int *, idxtype *);
+-
+diff --git a/mgridgen.pc.in b/mgridgen.pc.in
+new file mode 100644
+index 0000000..d84810c
+--- /dev/null
++++ b/mgridgen.pc.in
 @@ -0,0 +1,10 @@
-+## Source directory
-+
-+INCLUDES = -I../IMlib
-+
-+pkginclude_HEADERS = defs.h  macros.h  mgridgen.h  proto.h  struct.h
-+pkgincludedir = $(includedir)/mgridgen
-+
-+lib_LTLIBRARIES = libMGridGen.la
-+libMGridGen_la_SOURCES = aratio.c  coarsen.c  kwayfm.c  match.c  merge.c  mgridgen.c  refine.c  setup.c
-+libMGridGen_la_LDFLAGS = -no-undefined -export-dynamic -version-info 1:0:0
---- ParMGridGen-1.0-src/MGridGen/Programs/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/MGridGen/Programs/Makefile.am	2008-07-19 23:38:41.000000000 +0200
-@@ -0,0 +1,7 @@
-+## Source directory
-+
-+INCLUDES = -I../IMlib -I../Lib
-+
-+bin_PROGRAMS = mgridgen
-+mgridgen_SOURCES = io.c mgridgen.c
-+mgridgen_LDADD = ../IMlib/libIMlib.la ../Lib/libMGridGen.la -lm
---- ParMGridGen-1.0-src/ParMGridGen/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/ParMGridGen/Makefile.am	2008-07-20 16:04:31.000000000 +0200
-@@ -0,0 +1,4 @@
-+## middle directory
-+
-+#Build in these directories:
-+SUBDIRS= IMParMetis-2.0 ParLib Programs
---- ParMGridGen-1.0-src/ParMGridGen/IMParMetis-2.0/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/Makefile.am	2008-07-20 15:24:55.000000000 +0200
-@@ -0,0 +1,4 @@
-+## middle directory
-+
-+#Build in these directories:
-+SUBDIRS= ParMETISLib
---- ParMGridGen-1.0-src/ParMGridGen/IMParMetis-2.0/ParMETISLib/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/Makefile.am	2008-07-20 16:18:31.000000000 +0200
-@@ -0,0 +1,8 @@
-+## Source directory
-+
-+pkginclude_HEADERS = defs.h  macros.h  parmetis.h  proto.h  rename.h  struct.h
-+pkgincludedir = $(includedir)/imparmetis
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
 +
-+lib_LTLIBRARIES = libIMparmetis.la
-+libIMparmetis_la_SOURCES = coarsen.c  comm.c  debug.c  diffuse.c  drivers.c  edge_refine.c  fused.c  grsetup.c  iidxsort.c  ikeysort.c  memory.c  remap.c  setup.c  timer.c  util.c  var.c
-+libIMparmetis_la_LDFLAGS = -no-undefined -export-dynamic -version-info 1:0:0
---- ParMGridGen-1.0-src/ParMGridGen/ParLib/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/ParMGridGen/ParLib/Makefile.am	2008-07-20 15:53:06.000000000 +0200
++Name: MGridGen
++Description: Software for generating coarse grids
++Version: @VERSION@
++Libs: -L${libdir} -lIMlib -lMGridGen
++Cflags: -I${includedir}/mgridgen
+diff --git a/parmgridgen.h b/parmgridgen.h
+deleted file mode 100644
+index 6a1a637..0000000
+--- a/parmgridgen.h
++++ /dev/null
+@@ -1,5 +0,0 @@
+-typedef int idxtype;
+-typedef double realtype;
+-
+-void ParMGridGen(idxtype *, idxtype *, realtype *, realtype *, idxtype *,
+-                 realtype *, int *, int, int, int *, idxtype *, MPI_Comm *);
+diff --git a/parmgridgen.pc.in b/parmgridgen.pc.in
+new file mode 100644
+index 0000000..a11a597
+--- /dev/null
++++ b/parmgridgen.pc.in
 @@ -0,0 +1,10 @@
-+## Source directory
-+
-+INCLUDES = -I$(top_builddir)/MGridGen/IMlib
-+
-+pkginclude_HEADERS = defs.h  macros.h  parmgridgen.h  proto.h  rename.h  struct.h
-+pkgincludedir = $(includedir)/parmgridgen
-+
-+lib_LTLIBRARIES = libParMGridGen.la
-+libParMGridGen_la_SOURCES = comm.c  debug.c  grsetup.c  ikeysort.c  memory.c  move.c  parmgridgen.c  setup.c  util.c
-+libParMGridGen_la_LDFLAGS = -no-undefined -export-dynamic -version-info 1:0:0
---- ParMGridGen-1.0-src/ParMGridGen/Programs/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMGridGen-1.0/ParMGridGen/Programs/Makefile.am	2008-07-20 16:24:19.000000000 +0200
-@@ -0,0 +1,21 @@
-+## Source directory
-+
-+INCLUDES = -I../ParLib -I$(top_builddir)/MGridGen/IMlib
-+
-+bin_PROGRAMS = parmgridgen
-+parmgridgen_SOURCES = io.c  main.c  parmgridgen.c
-+parmgridgen_LDADD = ../IMParMetis-2.0/ParMETISLib/libIMparmetis.la ../ParLib/libParMGridGen.la \
-+	$(top_builddir)/MGridGen/IMlib/libIMlib.la $(top_builddir)/MGridGen/Lib/libMGridGen.la @MPILIBS@
-+
-+# AM_CPPFLAGS = -I$(top_srcdir)/ParMETISLib
-+# LDADD = $(top_builddir)/METISLib/libmetis.la \
-+# 	$(top_builddir)/ParMETISLib/libparmetis.la
-+
-+# check_PROGRAMS = parmgridgen
-+# parmgridgen_SOURCES = io.c  main.c  parmgridgen.c
-+
-+MPIRUN = mpirun -np 4
-+
-+check-local: $(check_PROGRAMS)
-+	$(MPIRUN) parmgridgen $(top_builddir)/Graphs/M6.metis 3 4 6 1 4 128
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
 +
++Name: ParMGridGen
++Description: Software for parallel (mpi) generating coarse grids
++Version: @VERSION@
++Libs: -L${libdir} -lIMparmetis -lParMGridGen
++Cflags: -I${includedir}/imparmetis -I${includedir}/parmgridgen
+-- 
+2.15.1
+
diff --git a/sci-libs/parmgridgen/files/parmgridgen-1.0-format-security.patch b/sci-libs/parmgridgen/files/parmgridgen-1.0-format-security.patch
new file mode 100644
index 000000000000..1ad445c705e9
--- /dev/null
+++ b/sci-libs/parmgridgen/files/parmgridgen-1.0-format-security.patch
@@ -0,0 +1,48 @@
+ ParMGridGen/IMParMetis-2.0/ParMETISLib/util.c | 4 ++--
+ ParMGridGen/ParLib/util.c                     | 4 ++--
+ 2 files changed, 4 insertions(+), 4 deletions(-)
+
+diff --git a/ParMGridGen/IMParMetis-2.0/ParMETISLib/util.c b/ParMGridGen/IMParMetis-2.0/ParMETISLib/util.c
+index d0dfc91..941f68e 100644
+--- a/ParMGridGen/IMParMetis-2.0/ParMETISLib/util.c
++++ b/ParMGridGen/IMParMetis-2.0/ParMETISLib/util.c
+@@ -25,7 +25,7 @@ void errexit(char *f_str,...)
+ 
+   sprintf(out2, "Error! %s", out1);
+ 
+-  fprintf(stdout, out2);
++  fprintf(stdout, "%s", out2);
+   fflush(stdout);
+ 
+   abort();
+@@ -46,7 +46,7 @@ void myprintf(CtrlType *ctrl, char *f_str,...)
+ 
+   sprintf(out2, "[%2d] %s", ctrl->mype, out1);
+ 
+-  fprintf(stdout, out2);
++  fprintf(stdout, "%s", out2);
+   fflush(stdout);
+ 
+ }
+diff --git a/ParMGridGen/ParLib/util.c b/ParMGridGen/ParLib/util.c
+index 9b8290d..c212b60 100644
+--- a/ParMGridGen/ParLib/util.c
++++ b/ParMGridGen/ParLib/util.c
+@@ -25,7 +25,7 @@ void MGriderrexit(char *f_str,...)
+ 
+   sprintf(out2, "Error! %s", out1);
+ 
+-  fprintf(stdout, out2);
++  fprintf(stdout, "%s", out2);
+   fflush(stdout);
+ 
+   abort();
+@@ -46,7 +46,7 @@ void MGridmyprintf(MGridCtrlType *ctrl, char *f_str,...)
+ 
+   sprintf(out2, "[%2d] %s", ctrl->mype, out1);
+ 
+-  fprintf(stdout, out2);
++  fprintf(stdout, "%s", out2);
+   fflush(stdout);
+ 
+ }
diff --git a/sci-libs/parmgridgen/files/parmgridgen-1.0-impl-fct.patch b/sci-libs/parmgridgen/files/parmgridgen-1.0-impl-fct.patch
new file mode 100644
index 000000000000..1a464b99ed2f
--- /dev/null
+++ b/sci-libs/parmgridgen/files/parmgridgen-1.0-impl-fct.patch
@@ -0,0 +1,70 @@
+ ParMGridGen/ParLib/move.c          | 1 +
+ ParMGridGen/ParLib/parmgridgen.c   | 1 +
+ ParMGridGen/ParLib/util.c          | 2 +-
+ ParMGridGen/Programs/io.c          | 2 +-
+ ParMGridGen/Programs/parmgridgen.c | 2 +-
+ 5 files changed, 5 insertions(+), 3 deletions(-)
+
+diff --git a/ParMGridGen/ParLib/move.c b/ParMGridGen/ParLib/move.c
+index 881b1ad..b02b467 100644
+--- a/ParMGridGen/ParLib/move.c
++++ b/ParMGridGen/ParLib/move.c
+@@ -9,6 +9,7 @@
+  */
+ 
+ #include "parmgridgen.h"
++#include "IMlib.h"
+ 
+ /*************************************************************************
+ * This function moves the graph, and returns a new graph.
+diff --git a/ParMGridGen/ParLib/parmgridgen.c b/ParMGridGen/ParLib/parmgridgen.c
+index 6fd4aa3..262e05c 100644
+--- a/ParMGridGen/ParLib/parmgridgen.c
++++ b/ParMGridGen/ParLib/parmgridgen.c
+@@ -9,6 +9,7 @@
+  */
+ 
+ #include "parmgridgen.h"
++#include "IMlib.h"
+ 
+ /***********************************************************************************
+ * This function is the entry point of the parallel coarse grid construction.
+diff --git a/ParMGridGen/ParLib/util.c b/ParMGridGen/ParLib/util.c
+index 9b8290d..fa2e10a 100644
+--- a/ParMGridGen/ParLib/util.c
++++ b/ParMGridGen/ParLib/util.c
+@@ -9,7 +9,7 @@
+  */
+ 
+ #include "parmgridgen.h"
+-
++#include "IMlib.h"
+ 
+ /*************************************************************************
+ * This function prints an error message and exits
+diff --git a/ParMGridGen/Programs/io.c b/ParMGridGen/Programs/io.c
+index 318c8b4..ed5d495 100644
+--- a/ParMGridGen/Programs/io.c
++++ b/ParMGridGen/Programs/io.c
+@@ -9,7 +9,7 @@
+  */
+ 
+ #include "parmgridgen.h"
+-
++#include "IMlib.h"
+ 
+ /*************************************************************************
+ * This function reads the CSR matrix
+diff --git a/ParMGridGen/Programs/parmgridgen.c b/ParMGridGen/Programs/parmgridgen.c
+index 2c0d38c..e9956c5 100644
+--- a/ParMGridGen/Programs/parmgridgen.c
++++ b/ParMGridGen/Programs/parmgridgen.c
+@@ -9,7 +9,7 @@
+  */
+ 
+ #include "parmgridgen.h"
+-
++#include "IMlib.h"
+ 
+ /***********************************************************************************
+ * This function is the testing routine for the adaptive multilevel partitioning code.
diff --git a/sci-libs/parmgridgen/parmgridgen-1.0-r1.ebuild b/sci-libs/parmgridgen/parmgridgen-1.0-r1.ebuild
new file mode 100644
index 000000000000..c94cad2a63ac
--- /dev/null
+++ b/sci-libs/parmgridgen/parmgridgen-1.0-r1.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit autotools
+
+MYP=ParMGridGen-${PV}
+
+DESCRIPTION="Software for parallel (mpi) generating coarse grids"
+HOMEPAGE="http://www-users.cs.umn.edu/~moulitsa/software.html"
+SRC_URI="http://www-users.cs.umn.edu/~moulitsa/download/${MYP}.tar.gz"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="static-libs"
+
+RESTRICT="mirror bindist"
+
+DEPEND="virtual/mpi"
+RDEPEND="${DEPEND}"
+
+S=${WORKDIR}/${MYP}
+
+pkg_setup(){
+	export CC=mpicc
+}
+
+PATCHES=(
+	"${FILESDIR}/${P}-autotools.patch"
+	"${FILESDIR}/${P}-as-needed.patch"
+	"${FILESDIR}/${P}-format-security.patch"
+	"${FILESDIR}/${P}-impl-fct.patch"
+)
+
+src_prepare() {
+	default
+	eautoreconf
+}
+
+src_configure() {
+	econf \
+		$(use_enable static-libs static)
+}
+
+src_install() {
+	default
+	dodoc README Doc/*.pdf
+}