gentoo christmass resync : 25.12.2020

3 files changed, 6 insertions, 219 deletions

diff --git a/sci-libs/trilinos/Manifest b/sci-libs/trilinos/Manifest
index d3808fa0537e..e0b35e33b55a 100644
--- a/sci-libs/trilinos/Manifest
+++ b/sci-libs/trilinos/Manifest
@@ -1,10 +1,6 @@
-DIST trilinos-12.14.1-patches-r0.tar.xz 6448 BLAKE2B f852a4612c400ddfb6dcecb476e0b9b2cd0f38ac9cd74fd09fc1f99ccb2588a4703f8c8514689c81d23aa218aff3cdcbe9b5205becea8936723d6e339705d54d SHA512 206bd08f0a5b7f7107e60c9e9c1a15fa7e74916bacb5399cccdd936b426768834ff24424ea77e8d1706afa98d88bb5a098b3b0203039024a3b5f5388c4a9735b
-DIST trilinos-12.14.1.tar.gz 129036436 BLAKE2B e7401df2ff8408a7af4a8e90d93b1929df65228c4f5cf3c754d20ebdfa8f3835800f540e87c1198e0baf2fefe0920618ae497f59373720754ab0c9dc1da93136 SHA512 dfff0e0582cb5ad12614dd53e9635572c8d1ee86d96f432f5a6e046af63edb13f6bfa3037204ab89fbb0d27e9be9bd9661d47efb41ab2a6e421bca5eba6b6a87
-DIST trilinos-12.18.1-patches-r0.tar.xz 6236 BLAKE2B fdcdedde68ef855aa98671223ad2c42467284ad7ca364e2b5ca715094a6efacc463f2d1812ee63ac980ca87dbe16bb2ac04835f52efa1df34651a608cb5407e9 SHA512 e6db2be4642b8f9797b0be6dd05641ae469dd5117b1b04da54ed955bd56473d6aaa69d59dfd7869db1e7059d2d9b2cb2d9269dd5ef863663eabb90c5c256b987
-DIST trilinos-12.18.1.tar.gz 152007573 BLAKE2B 5dc2ee432d777712fb4ca1dc2d7ad68015f523fdbcbd4f55388a89d31c0946a1c5031b3e8f906952cf6b2f4f16928e6da5f17b1f6ee0f0e5669cfce5c8a09367 SHA512 e2a57df57e8e98ed97bbde9c1e768738f0eaccc32466aff6daa308573a860b3debee89bd570c113ca0f6a6458ff562aa6596ddf657236c368b7b2e26a4b4466b
 DIST trilinos-13.0.0-patches-r0.tar.xz 7672 BLAKE2B 6412f1226549086ef2fca3c4d8bba3c5541489879f4fa37c3598a7271128e3232fa1cc56a51d44fb88d679458a79a082c3984085ddbe4bc0884b0cb45ba683c0 SHA512 91372fe0f47a1f5d4dbc1856e2cfb9d4f1eb8cc0de941013a7a6e791730c9e10decdcd4ca39b36bae836ac66040bee70af187b4a056d46b0da0fe72e8c5943fc
 DIST trilinos-13.0.0.tar.gz 157960946 BLAKE2B 6336d71f469dd4561786092b175ec3396d6b7956aeec6ab8d9d6e87a1b1158a0840661a87514888fc16ea36c44d628dadb865a3244785c2c5d4b24213aca2096 SHA512 74b1e852971c8f040e8640688c879659bf6b03eed0bc6f76f31d768e7c4eb50b23fb8bfb9997d7f630001d80150161aac80fbd3237f52071657908320c1d723d
-EBUILD trilinos-12.14.1.ebuild 6148 BLAKE2B d8ef14be03e34742e59292426af03336fb3997f3e50b02e0d6a9d6114a5d67c7d3530e93f44e645e247f395343b1a3045383714f8408a41a0434cf125f6006c5 SHA512 b96f197cfd8435366940237eba40dd8cd48e950e6c814ebcb18b6c04125f374d4475cecaea3c25a2ec60b3685e3db2d52ac025a9f6031111c67039cfa00be2d8
-EBUILD trilinos-12.18.1.ebuild 6445 BLAKE2B 0e8efec55654b6f10ef389df708c6f3ce1f9d80be8f8d5a45a442520a656d59859a1ce7f796650445deaa8b16e5077ff4f2333401eb0a336ef3e5f50779036ad SHA512 639cf20e9bd4353c63a3c61e831ee6a24471c61cfccc4a9821f759b2fd652a63a9de7ac5c798aca5e65bbd856193659e105e1dc457f9f1ec0fa634e71935c515
+DIST trilinos-13.0.1.tar.gz 157950374 BLAKE2B 79f337b02a0fe9ddf7b55334e035946204b3bb469b92fff4063896a378c82d9c5f04c0bf0e9ddd21603ecf9d84a91860606482b545916f16029a11d2b6c64aa0 SHA512 22241a9ad8b6b6ab9117aba254f65195fc0c8e1b52eacb16e763c999086b6da6b0c180d8864fbe421704e0fe0c433d37512099755d54e60f13ed525dc6c0fd57
 EBUILD trilinos-13.0.0.ebuild 6530 BLAKE2B 655911a00a65ff877f2c3eae666ab44136db8b9651683120f0e8f85fbb883206c3ebce2f5464d9d140e9246102af741d2ed2ff688e0146055ac1c9aae15d47bb SHA512 ab20c26d14b3b03e4e5d66c4aa5f69913bafa34d933891269007613694fb2ec7c54bde1164e81daf9f8cad33bcd221532773e2b79cd693fa18d96e8bb0f1a2d0
+EBUILD trilinos-13.0.1.ebuild 6503 BLAKE2B 4610913cfba5220f83712b93a5dbc6e684bdd3da572171ee80bbf3375ff28466c7e1f57a68b9c1e0baf62a1375a12c2401f5700798be3a39820a113375cc7dd1 SHA512 28ec65d1bfe227f59585d5dc81aed40ed5a15236a40e38141bb658075dc28e6f6c76e1de9598cdfdc18fa9307c66dc05f41e994b02442d3348df4889835c0214
 MISC metadata.xml 2778 BLAKE2B 45cb2a647a1730c9b6b21271364b5f4acaf145f6ae33db356d0b9be7584705c29a645d3f96abfe0a9b87540ae55ab586ec202191776f4472b66291c274b9f24b SHA512 c58e98197353efe1c6fef038dd53d4a938e85aa66fc53f00cab0133d8ee89c629eead55c270c88583778b193f0a85b498c7235fc3f1e8f45a1abfff2d5f0cbec
diff --git a/sci-libs/trilinos/trilinos-12.14.1.ebuild b/sci-libs/trilinos/trilinos-12.14.1.ebuild
deleted file mode 100644
index affe878ba6ec..000000000000
--- a/sci-libs/trilinos/trilinos-12.14.1.ebuild
+++ /dev/null
@@ -1,211 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-CMAKE_MAKEFILE_GENERATOR=emake
-
-inherit cmake-utils toolchain-funcs multilib toolchain-funcs
-
-DESCRIPTION="Scientific library collection for large scale problems"
-HOMEPAGE="http://trilinos.sandia.gov/"
-MY_PV="${PV//\./-}"
-PATCHSET="r0"
-SRC_URI="https://github.com/${PN}/Trilinos/archive/${PN}-release-${MY_PV}.tar.gz -> ${P}.tar.gz
-	https://dev.gentoo.org/~tamiko/distfiles/${P}-patches-${PATCHSET}.tar.xz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-LICENSE="BSD LGPL-2.1"
-SLOT="0"
-
-IUSE="
-	adolc arprec boost clp cuda eigen glpk gtest hdf5 hwloc hypre
-	matio metis mkl mumps netcdf petsc qd scalapack scotch sparse
-	superlu taucs tbb test threads tvmet yaml zlib X
-"
-
-# TODO: fix export cmake function for tests
-RESTRICT="test"
-
-RDEPEND="
-	sys-libs/binutils-libs
-	virtual/blas
-	virtual/lapack
-	virtual/mpi
-	adolc? ( sci-libs/adolc )
-	arprec? ( sci-libs/arprec )
-	boost? ( dev-libs/boost )
-	clp? ( sci-libs/coinor-clp )
-	cuda? ( >=dev-util/nvidia-cuda-toolkit-3.2 )
-	eigen? ( dev-cpp/eigen:3 )
-	glpk? ( sci-mathematics/glpk )
-	gtest? ( dev-cpp/gtest )
-	hdf5? ( sci-libs/hdf5[mpi] )
-	hypre? ( sci-libs/hypre )
-	hwloc? ( sys-apps/hwloc )
-	matio? ( sci-libs/matio )
-	mkl? ( sci-libs/mkl )
-	metis? ( || ( sci-libs/parmetis sci-libs/metis ) )
-	mumps? ( sci-libs/mumps )
-	netcdf? ( sci-libs/netcdf )
-	petsc? ( sci-mathematics/petsc )
-	qd? ( sci-libs/qd )
-	scalapack? ( sci-libs/scalapack )
-	scotch? ( sci-libs/scotch )
-	sparse? ( sci-libs/cxsparse sci-libs/umfpack )
-	superlu? ( sci-libs/superlu )
-	taucs? ( sci-libs/taucs )
-	tbb? ( dev-cpp/tbb )
-	tvmet? ( dev-libs/tvmet )
-	yaml? ( dev-cpp/yaml-cpp )
-	zlib? ( sys-libs/zlib )
-	X? ( x11-libs/libX11 )"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-S="${WORKDIR}/Trilinos-${PN}-release-${MY_PV}"
-
-PATCHES=(
-	"${WORKDIR}"/patches
-)
-
-trilinos_conf() {
-	local dirs libs d
-	for d in $($(tc-getPKG_CONFIG) --libs-only-L $1); do
-		dirs="${dirs};${d:2}"
-	done
-	[[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_DIRS=${dirs:1}" )
-	for d in $($(tc-getPKG_CONFIG) --libs-only-l $1); do
-		libs="${libs};${d:2}"
-	done
-	[[ -n ${libs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_NAMES=${libs:1}" )
-	dirs=""
-	for d in $($(tc-getPKG_CONFIG) --cflags-only-I $1); do
-		dirs="${dirs};${d:2}"
-	done
-	[[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_INCLUDE_DIRS=${dirs:1}" )
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DBUILD_SHARED_LIBS=ON
-		-DCMAKE_INSTALL_PREFIX="${EPREFIX}"
-		-DCMAKE_SKIP_INSTALL_RPATH=ON
-		-DTrilinos_INSTALL_CONFIG_DIR="${EPREFIX}/usr/$(get_libdir)/cmake"
-		-DTrilinos_INSTALL_INCLUDE_DIR="${EPREFIX}/usr/include/trilinos"
-		-DTrilinos_INSTALL_LIB_DIR="${EPREFIX}/usr/$(get_libdir)/trilinos"
-		-DTrilinos_ENABLE_ALL_PACKAGES=ON
-		-DTrilinos_ENABLE_PyTrilinos=OFF
-		-DTrilinos_ENABLE_SEACASChaco=OFF
-		-DTrilinos_ENABLE_SEACASExodiff="$(usex netcdf)"
-		-DTrilinos_ENABLE_SEACASExodus="$(usex netcdf)"
-		-DTrilinos_ENABLE_TESTS="$(usex test)"
-		-DZoltan2_ENABLE_Experimental=ON
-		-DTPL_ENABLE_BinUtils=ON
-		-DTPL_ENABLE_BLAS=ON
-		-DTPL_ENABLE_LAPACK=ON
-		-DTPL_ENABLE_MPI=ON
-		-DTPL_ENABLE_ADOLC="$(usex adolc)"
-		-DTPL_ENABLE_AMD="$(usex sparse)"
-		-DTPL_ENABLE_ARPREC="$(usex arprec)"
-		-DTPL_ENABLE_BLACS="$(usex scalapack)"
-		-DTPL_ENABLE_BoostLib="$(usex boost)"
-		-DTPL_ENABLE_Boost="$(usex boost)"
-		-DTPL_ENABLE_Clp="$(usex clp)"
-		-DTPL_ENABLE_CSparse="$(usex sparse)"
-		-DTPL_ENABLE_CUDA="$(usex cuda)"
-		-DTPL_ENABLE_CUSPARSE="$(usex cuda)"
-		-DTPL_ENABLE_Eigen="$(usex eigen)"
-		-DTPL_ENABLE_GLPK="$(usex glpk)"
-		-DTPL_ENABLE_gtest="$(usex gtest)"
-		-DTPL_ENABLE_HDF5="$(usex hdf5)"
-		-DTPL_ENABLE_HWLOC="$(usex hwloc)"
-		-DTPL_ENABLE_HYPRE="$(usex hypre)"
-		-DTPL_ENABLE_Matio="$(usex matio)"
-		-DTPL_ENABLE_METIS="$(usex metis)"
-		-DTPL_ENABLE_MKL="$(usex mkl)"
-		-DTPL_ENABLE_MUMPS="$(usex mumps)"
-		-DTPL_ENABLE_Netcdf="$(usex netcdf)"
-		-DTPL_ENABLE_PARDISO_MKL="$(usex mkl)"
-		-DTPL_ENABLE_PETSC="$(usex petsc)"
-		-DTPL_ENABLE_Pthread="$(usex threads)"
-		-DTPL_ENABLE_QD="$(usex qd)"
-		-DTPL_ENABLE_SCALAPACK="$(usex scalapack)"
-		-DTPL_ENABLE_Scotch="$(usex scotch)"
-		-DTPL_ENABLE_SuperLU="$(usex superlu)"
-		-DTPL_ENABLE_TAUCS="$(usex taucs)"
-		-DTPL_ENABLE_TBB="$(usex tbb)"
-		-DTPL_ENABLE_Thrust="$(usex cuda)"
-		-DTPL_ENABLE_TVMET="$(usex tvmet)"
-		-DTPL_ENABLE_UMFPACK="$(usex sparse)"
-		-DTPL_ENABLE_X11="$(usex X)"
-		-DTPL_ENABLE_yaml-cpp="$(usex yaml)"
-		-DTPL_ENABLE_Zlib="$(usex zlib)"
-		-DML_ENABLE_SuperLU:BOOL=OFF
-	)
-
-	use eigen && \
-		mycmakeargs+=(
-		-DEigen_INCLUDE_DIRS="${EPREFIX}/usr/include/eigen3"
-	)
-	use hypre && \
-		mycmakeargs+=(
-		-DHYPRE_INCLUDE_DIRS="${EPREFIX}/usr/include/hypre"
-	)
-	use scotch && \
-		mycmakeargs+=(
-		-DScotch_INCLUDE_DIRS="${EPREFIX}/usr/include/scotch"
-	)
-
-	# cxsparse is a rewrite of csparse + extras
-	use sparse && \
-		mycmakeargs+=(
-		-DCSparse_LIBRARY_NAMES="cxsparse"
-	)
-
-	# mandatory blas and lapack
-	trilinos_conf blas BLAS
-	trilinos_conf lapack LAPACK
-	use superlu && trilinos_conf superlu SuperLU
-	use metis && trilinos_conf metis METIS
-
-	# blacs library is included in scalapack these days
-	if use scalapack; then
-		trilinos_conf scalapack SCALAPACK
-		mycmakeargs+=(
-			-DBLACS_LIBRARY_NAMES="scalapack"
-			-DBLACS_INCLUDE_DIRS="${EPREFIX}/usr/include/blacs"
-		)
-	fi
-
-	#
-	# Make sure we use the compiler wrappers in order to build trilinos.
-	#
-	export CC=mpicc CXX=mpicxx && tc-export CC CXX
-
-	#
-	# cmake-utils eclass patches the base directory CMakeLists.txt
-	# which does not work for complex Trilinos CMake modules
-	#
-	CMAKE_BUILD_TYPE=RELEASE cmake-utils_src_configure
-}
-
-src_install() {
-	cmake-utils_src_install
-
-	# Clean up the mess:
-	mv "${ED}"/bin "${ED}/usr/$(get_libdir)"/trilinos || die "mv failed"
-	if [ -f "${ED}"/lib/exodus.py ]; then
-		mv "${ED}"/lib/exodus.py "${ED}/usr/$(get_libdir)"/trilinos || die "mv failed"
-	fi
-
-	#
-	# register $(get_libdir)/trilinos in LDPATH so that the dynamic linker
-	# has a chance to pick up the libraries...
-	#
-	cat >> "${T}"/99trilinos <<- EOF
-	LDPATH="${EPREFIX}/usr/$(get_libdir)/trilinos"
-	PATH="${EPREFIX}/usr/$(get_libdir)/trilinos/bin"
-	EOF
-	doenvd "${T}"/99trilinos
-}
diff --git a/sci-libs/trilinos/trilinos-12.18.1.ebuild b/sci-libs/trilinos/trilinos-13.0.1.ebuild
index d526edf1054c..c7868ab5db28 100644
--- a/sci-libs/trilinos/trilinos-12.18.1.ebuild
+++ b/sci-libs/trilinos/trilinos-13.0.1.ebuild
@@ -11,7 +11,7 @@ HOMEPAGE="http://trilinos.sandia.gov/"
 MY_PV="${PV//\./-}"
 PATCHSET="r0"
 SRC_URI="https://github.com/${PN}/Trilinos/archive/${PN}-release-${MY_PV}.tar.gz -> ${P}.tar.gz
-	https://dev.gentoo.org/~tamiko/distfiles/${P}-patches-${PATCHSET}.tar.xz"
+	https://dev.gentoo.org/~tamiko/distfiles/${PN}-13.0.0-patches-${PATCHSET}.tar.xz"
 
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 
@@ -101,7 +101,6 @@ src_configure() {
 		-DTrilinos_ENABLE_SEACASExodiff="$(usex netcdf)"
 		-DTrilinos_ENABLE_SEACASExodus="$(usex netcdf)"
 		-DTrilinos_ENABLE_TESTS="$(usex test)"
-		-DZoltan2_ENABLE_Experimental=ON
 		-DTPL_ENABLE_BinUtils=ON
 		-DTPL_ENABLE_BLAS=ON
 		-DTPL_ENABLE_LAPACK=ON
@@ -205,6 +204,9 @@ src_install() {
 		mv "${ED}"/usr/lib/pkgconfig "${ED}/usr/$(get_libdir)"
 	fi
 
+	mv "${ED}"/include/* "${ED}"/usr/include || die "mv failed"
+	rmdir "${ED}"/include
+
 	#
 	# register $(get_libdir)/trilinos in LDPATH so that the dynamic linker
 	# has a chance to pick up the libraries...