gentoo auto-resync : 02:04:2024 - 14:14:14

4 files changed, 107 insertions, 2 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index 972d041053fa..35a0dbd50498 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/netcdf/Manifest b/sci-libs/netcdf/Manifest
index 6a21a25f45bb..2af3e697f10c 100644
--- a/sci-libs/netcdf/Manifest
+++ b/sci-libs/netcdf/Manifest
@@ -1,4 +1,5 @@
 AUX netcdf-4.7.4-big-endian-test.patch 689 BLAKE2B ab28269ee5922816e7ef7834dddec974c98951a41c0025041f9ee67d92c7bfe57887f5ac8d8beb2426e2c095fc06cf4b29046a9b29873b125d681b169c9613b6 SHA512 72575f890615a05a6f1beeebfd3edcd367fe148be017a32847b0a7db96c594e6bb5d01acd865257b25410e0a22699b1beef2c54748ccb09ea5e41009f4e0f9ee
 DIST netcdf-c-4.9.2.tar.gz 7142536 BLAKE2B b24135070d2f1f0b53fe738f8839039547eceba16d36905bb8cd7be983ce0c1127b7b01ae37dbde50087aa82fd56f00fab9bfa75c7d94fd4478031bb8a6da247 SHA512 7a96bcf673d5a9e1537d660aaf085a1dfaefc7dfb0fc96358462d92e7bbfe541184583681797e6a54d11b8588504b7d8a9b0b9bd850eecd02ed73aa2eb5ffa0d
+EBUILD netcdf-4.9.2-r1.ebuild 2573 BLAKE2B f28fd58e2482bf1391bf235c2219d4260b28094418fa4299987cad232fffc31a8d69f8526a2c2d21bd0ff9d3b5b10174d5aad60b7d6bf4f5f874b1daf952542a SHA512 1dfb8049d5bfa04e5abca4e02b55b00bff6314e0db8150ece4a588ad330a4d5882681d1a9e59b23ed5cbc2f891bc73542172fc3b84d35af814e22f7963bef51c
 EBUILD netcdf-4.9.2.ebuild 1654 BLAKE2B 659bd08ff2776a86da5b6496cf9fc92e5b0bf8bd356f56dcfd6d1ea8ee5b6bf8bd2c51c19ccd035415b43c29bd5ddd3a41a5602a920252347e6abc1b196166b5 SHA512 a4ed28c724d7b6242fb2a48ebc667a5a4fc8ce57bf38ace9986a73fb9e32d5ba30c61f0bf66eca47cc839d2ed25af5b2d11553a47648f56d5d87ee43da90499d
-MISC metadata.xml 990 BLAKE2B 17406dcf87f633cd22c32a239799a5e3bb2e89d3d7669cc1d066c137ea06a3bc2f07478d434ad0776a6843339f181623dd2e9a8cbf9d24d325e4d9d7ec66fe6f SHA512 209a76790a7ad18447cb27d880e0d741763415567ce43c05ee6551544a673a86c9e8d7ed337f08f153681b23827958b1ada462524d0c66279ad1ef55f26310ba
+MISC metadata.xml 1131 BLAKE2B 2578a44e7142d8d072820f31db58de4e5550e4e9d1b3fb7d420f7d41d810580b98757d7fead672e28ea615820fa3e7f27738fe6a04c4201250596f8b37533271 SHA512 77b14836750cc93bbc38613c00ef125ebc89705bcc29b68823675662fdaeb1ddb43d6c0023a71920e23e458bd10c55e89248676fa7994d6d15992c9fdc2bce38
diff --git a/sci-libs/netcdf/metadata.xml b/sci-libs/netcdf/metadata.xml
index 710afdc8ff08..dec0009bbcb4 100644
--- a/sci-libs/netcdf/metadata.xml
+++ b/sci-libs/netcdf/metadata.xml
@@ -14,8 +14,9 @@
   access, and sharing of scientific data.
   </longdescription>
   <use>
+    <flag name="blosc">Allow using blosc compression via <pkg>dev-libs/c-blosc</pkg></flag>
     <flag name="dap">Support for remote data access with the built-in OPeNDAP client</flag>
-    <flag name="hdf">Add support for the Hierarchical Data Format v.4 <pkg>sci-libs/hdf</pkg></flag>
+    <flag name="hdf">Build with HDF4 read capability(<pkg>sci-libs/hdf</pkg>, <pkg>sci-libs/hdf5</pkg> and <pkg>sys-libs/zlib</pkg> required).</flag>
   </use>
   <upstream>
     <remote-id type="github">Unidata/netcdf-c</remote-id>
diff --git a/sci-libs/netcdf/netcdf-4.9.2-r1.ebuild b/sci-libs/netcdf/netcdf-4.9.2-r1.ebuild
new file mode 100644
index 000000000000..458001188497
--- /dev/null
+++ b/sci-libs/netcdf/netcdf-4.9.2-r1.ebuild
@@ -0,0 +1,103 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+DESCRIPTION="Scientific library and interface for array oriented data access"
+HOMEPAGE="https://www.unidata.ucar.edu/software/netcdf/"
+SRC_URI="https://downloads.unidata.ucar.edu/netcdf-c/${PV}/${PN}-c-${PV}.tar.gz"
+S="${WORKDIR}"/${PN}-c-${PV}
+
+LICENSE="UCAR-Unidata"
+# SONAME of libnetcdf.so
+SLOT="0/19"
+KEYWORDS="~amd64 ~arm ~arm64 ~ia64 ~ppc ~ppc64 -riscv ~x86 ~amd64-linux ~x86-linux"
+IUSE="blosc bzip2 +dap doc examples hdf +hdf5 mpi szip test zstd"
+RESTRICT="!test? ( test )"
+
+# NOTE OPTION(ENABLE_HDF4 "Build netCDF-4 with HDF4 read capability(HDF4, HDF5 and Zlib required)." OFF)
+RDEPEND="
+	dev-libs/libxml2:=
+	sys-libs/zlib:=
+	blosc? ( dev-libs/c-blosc:= )
+	bzip2? ( app-arch/bzip2:= )
+	dap? ( net-misc/curl:= )
+	hdf? (
+		media-libs/libjpeg-turbo:=
+		sci-libs/hdf:=
+		sci-libs/hdf5:=
+	)
+	hdf5? ( sci-libs/hdf5:=[hl(+),mpi=,szip=,zlib] )
+	zstd? ( app-arch/zstd:= )
+"
+
+# deflate blosc zstd bz2
+DEPEND="${RDEPEND}"
+BDEPEND="
+	virtual/pkgconfig
+	doc? ( app-text/doxygen[dot] )
+"
+
+REQUIRED_USE="
+	szip? ( hdf5 )
+	mpi? ( hdf5 )
+"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.7.4-big-endian-test.patch
+)
+
+src_configure() {
+	use mpi && export CC=mpicc
+
+	local mycmakeargs=(
+		-DCMAKE_POLICY_DEFAULT_CMP0153="OLD" # exec_program
+
+		-DENABLE_DAP_REMOTE_TESTS=OFF
+		#-DENABLE_HDF4_FILE_TESTS=OFF
+		-DENABLE_LIBXML2=ON
+
+		-DBUILD_SHARED_LIBS="yes"
+		-DBUILD_TESTING="$(usex test)"
+		-DBUILD_UTILITIES="yes"
+
+		-DENABLE_DAP="$(usex dap)"
+		-DENABLE_DAP2="$(usex dap)"
+		-DENABLE_DAP4="$(usex dap)"
+
+		-DENABLE_DOXYGEN="$(usex doc)"
+		-DENABLE_EXAMPLES="$(usex examples)"
+		-DENABLE_HDF4="$(usex hdf)"
+		-DENABLE_NETCDF_4="$(usex hdf5)"
+		-DENABLE_TESTS="$(usex test)"
+
+		-DENABLE_NCZARR="yes"
+		# NOTE set these via MYCMAKEARGS if need be
+		# -DENABLE_NCZARR_FILTERS="yes"
+		# -DENABLE_NCZARR_FILTER_TESTING="yes"
+		# -DENABLE_NCZARR_ZIP="yes"
+
+		-DCMAKE_DISABLE_FIND_PACKAGE_Blosc="$(usex !blosc)"
+		-DCMAKE_DISABLE_FIND_PACKAGE_Bz2="$(usex !bzip2)"
+		-DCMAKE_DISABLE_FIND_PACKAGE_Szip="$(usex !szip)"
+		-DCMAKE_DISABLE_FIND_PACKAGE_Zstd="$(usex !zstd)"
+	)
+
+	cmake_src_configure
+}
+
+src_test() {
+	[[ -f "${BUILD_DIR}/nc_test4/run_par_test.sh" ]] && \
+	sed -e 's/mpiexec/mpiexec --use-hwthread-cpus/g' -i "${BUILD_DIR}/nc_test4/run_par_test.sh" || die
+
+	cmake_src_test
+}
+
+src_install() {
+	cmake_src_install
+
+	# bug #827188
+	sed -i -re "s:${EPREFIX}/usr/$(get_libdir)/lib(dl|m).(so|a);:\1;:g" "${ED}/usr/$(get_libdir)/cmake/netCDF/netCDFTargets.cmake" || die
+}