gentoo auto-resync : 25:02:2025 - 19:25:33

9 files changed, 275 insertions, 3 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index e9c94220f331..7ca88a1391ef 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/libqalculate/Manifest b/sci-libs/libqalculate/Manifest
index bba6be3448f6..a55baafb005a 100644
--- a/sci-libs/libqalculate/Manifest
+++ b/sci-libs/libqalculate/Manifest
@@ -5,5 +5,5 @@ DIST libqalculate-5.5.0.tar.gz 2209195 BLAKE2B 64781eeb1ad06bb25ac604fce10fb6a15
 EBUILD libqalculate-5.3.0-r1.ebuild 2024 BLAKE2B 0d97cc798bca2a1be1a0f9476fc0bfed859eeef6a91a14f97bce3d73d7a9264fb2b5aa5fd7bc8abbb446bc328477c9568de8a1a5d9d41229fb165be5be3109fb SHA512 209f7f45bd48e5465bf8baf0148b5a743501f38231111053ca368432ed5c96ea39559fa4a015b9aa44a0eed55c8a2dac5a8e5473ff763c289ea3d833b7dc8188
 EBUILD libqalculate-5.4.0.1.ebuild 2055 BLAKE2B 3e06de568764eb87ba1c6583e9488afc6c55363f97887f6e174e1dca34d98ab1941658652d6026da35a6fc0e1abec25123d09d05f94d273852e1d5fbd64c9512 SHA512 390a56f0437e02f8249316ec7e121705269fd594f08f01b0b5b73ac2d3d8c490396b6cde5c148ec47935f605203960e8582cf5305e452f3ac2ea8548799f4ea7
 EBUILD libqalculate-5.4.0.ebuild 2030 BLAKE2B a8c68135617a95f870d188bdf5d6930ba0e6f88797e61109fb4767e31555a1ea10e8f34cd630ebc4b03ef9c43db4667786d48babdff704b37eaac80c5c7ca8a5 SHA512 dfeaeb60112fc043b0dadb7d01cae32033973809283019d4f77e41514eb8776bc3354380818175e54f72cb4c21e0ce6f106279220e7e91e3d0bc772b094e8e0c
-EBUILD libqalculate-5.5.0.ebuild 2061 BLAKE2B 15cffc65c467b5e4d59dedc3edcba449772cc7b9c81e49e973929bd851dede7ddd6ec3cf81ac8702eec71627be86512401d2483ee02453ec5fe0104d3b6d2a81 SHA512 14d9d6980d19264b3451f488e25256b5206aaf703d69a01828e24bc69dc3c017b8decaaac0ff27d2922bf55d1e526615d3590f810efd037e3a7b3df63a216211
+EBUILD libqalculate-5.5.0.ebuild 2055 BLAKE2B 3e06de568764eb87ba1c6583e9488afc6c55363f97887f6e174e1dca34d98ab1941658652d6026da35a6fc0e1abec25123d09d05f94d273852e1d5fbd64c9512 SHA512 390a56f0437e02f8249316ec7e121705269fd594f08f01b0b5b73ac2d3d8c490396b6cde5c148ec47935f605203960e8582cf5305e452f3ac2ea8548799f4ea7
 MISC metadata.xml 807 BLAKE2B 84adb8d9b92f233d93cc630d9dbf89630a9ca1ea839f0d7d5100763c9c6e4a7065753bfe55f013e6aa99370822b4d638e7e788c8cb7bd30cae4b7bed2d7befd9 SHA512 d96812e36a70e9c1a776fe5882e1ded9fe2e7a3d1406a619202af25fc0d20180ed3209ed6df79e147697e450edb42cfcc6f38ee99ecec4e1513949b92576b4fd
diff --git a/sci-libs/libqalculate/libqalculate-5.5.0.ebuild b/sci-libs/libqalculate/libqalculate-5.5.0.ebuild
index 091c29f432b9..b9213fc29c4d 100644
--- a/sci-libs/libqalculate/libqalculate-5.5.0.ebuild
+++ b/sci-libs/libqalculate/libqalculate-5.5.0.ebuild
@@ -17,7 +17,7 @@ S="${WORKDIR}"/"${PN}-${MY_PV}"
 LICENSE="GPL-2+"
 # SONAME changes pretty often on bumps. Check!
 SLOT="0/23.3"
-KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~loong ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~alpha amd64 ~arm arm64 ~hppa ~loong ppc ppc64 ~riscv sparc x86 ~amd64-linux ~x86-linux"
 IUSE="curl icu gnuplot +hardened readline test"
 RESTRICT="!test? ( test )"
 
diff --git a/sci-libs/taucs/Manifest b/sci-libs/taucs/Manifest
index 393f1d8f7ea6..d11acc935b79 100644
--- a/sci-libs/taucs/Manifest
+++ b/sci-libs/taucs/Manifest
@@ -1,4 +1,9 @@
+AUX taucs-2.2-missing-include.patch 832 BLAKE2B c2187358f0aedaf10564d39de771e06d4683dacd354bb9dadb063c8e4b1294b4085281cfc20d1bebf293d0a5c29e8f10d5dc6cf3a82bd7b565589996b21feff7 SHA512 1260dbbb69e7e67cbe4488999dad83fd49d5347f1cc7711bcf7f7cf8aa818c9c1c10884a4b06a2663ae8af4d8e4a48a1a02ffdab48aef517c1880d287bc5792b
 AUX taucs-2.2-respect-ar.patch 635 BLAKE2B 59ea54427651adc597caf85bf5eafe8055a6223e3c588939519e660661ffec4082d574c08aebff8106508f4b5afe147d1f7ef5c1972b17461d286273c9cbb76a SHA512 b18551f3d386ebd203b422c9848bfb14c7d8bb67e0facb450869d0846ca23e35902339cfa519ef7b33d1cf0dfb6301bad5b9f2fcd2035d1e02b150a0c15a26e3
+AUX taucs-2.2.1-C23.patch 2966 BLAKE2B 11d3dc4752539589999650680e231f8a5bac252683bfd2c527f68ab06c5230763e8b0821badd1fb4883e692ed783ed5e8f841c6381c038650600d2a9fd1a467f SHA512 47662bb2ad8c4dfcb27c7455e43e969d99e4891b5b4bc388aa897e7b7f6e1403f63e7f60a30ea8c11df84b82d805bb139dfd59fc9af49d829bc130520044a558
+AUX taucs-2.2.1-allocate-memory-in-test.patch 777 BLAKE2B 4d5ccc3a4297126f648e17907188a3b8ffc4bad4fac7e14e9082b706baac601d11aff5f5995cdd6107aaaa680e260c5be9431d97c86e34fdf235b84ec5b8f8d9 SHA512 ccb0a81c68bad2da8797ac81f352cec328f2e82bb32165fc5af62bd9e4f2ec2e26273d9fd25dece263102590cc732998964b02725d296aa599f9e853913e734f
+DIST taucs-2.2.1.tar.gz 1594127 BLAKE2B 426f5a6f919415480a14d231233214d4e560ecfb257b67751fc26ce0897acab504ee50d0dd074dd99c9c0b74c1bcad2c2f88e8a9708107a5c2dfe52d452eba02 SHA512 727f05a7ea89cb74893905b17571ae9275db283e0fbe1d5538dfd72c0f9ed1a47325b1845b1e8b381793a513b4b538b35d503f5dbb63db222e1b01fd1169f1e9
 DIST taucs-2.2.tgz 1573863 BLAKE2B 21cf7479d7ce1f27678431e0d3dcaea1b3f8b11071b44651207791d6980bf5be0ed51cab7915f9e8da88d5da777c0f03a8d058e2ac8881e0d0b244ddfd796f5c SHA512 d8652de2da343dfd19c4278ac99313bcb577d976decdd3bd3875f0c9576832605b787feaef916eb4e82f22907c8bd029125c2ae56c827639e4d535ad62f20fcf
 EBUILD taucs-2.2-r1.ebuild 1967 BLAKE2B a9e232cadb1bd1a1f35335fd645b4103a2e9d44539bae7b83b009c79c1ae946fa6c423ef6def6f1a806ecc527f2305d4e650f667cd1ee14b3d221d42e415a450 SHA512 e2931a7f3ef767f77a04bb1b7bb9ad2d200181a45b34d782d92f73049c8406e3b7230a30bf3744231c6565e5705df539a4d0aa38fec0a0a877d1d0a63cc1e124
-MISC metadata.xml 1070 BLAKE2B 587dedd3574665d544778ab9048c5c5558072f25fe7e471bcfb9d4482c7dcafeb3dd64534df8fde8ddb2f6a78beb359b8d50b9db571ae6e572852121e8cdf512 SHA512 adc87df19bdb8589cade774312a3f056cb4abc373166e5a9a6b84d52e99c65b0344ef2e045ad641e168abfcbd74b92c6d1e40fbf33bc51a507e6591ac0bd0b4a
+EBUILD taucs-2.2.1.ebuild 2306 BLAKE2B 6d21ec6d2c5625c8d51e0113fa6447e3cb25fe552c0d80cb2a348f68380c838af48a14c8db355846694f59c4c3755600cda25a7fc29f9a9e062586799349f930 SHA512 e5a1159ff124cf61aef079a860acefb3c13e435f53518cbfbb799b61bd6fce651b4559ea9333465b4f87bf7ba2a184a799820385e26dfd2d2754ce33da5ad295
+MISC metadata.xml 1152 BLAKE2B f8ecec1047be757e7b2300b2e6c7aad30c9e60ad5746d0ecf9d65343d6346b198538dcc559282e612605af95942f6cdb77955d35a94e41e71957d722e0823da1 SHA512 3d097acdbb9514f129d00190be4029cab5cf0736469dfbf6bf7bf01af6d2fcb529ace2eb086547d4d7755d1924188d6a57091412e2d2b03b176cb3942029bdbc
diff --git a/sci-libs/taucs/files/taucs-2.2-missing-include.patch b/sci-libs/taucs/files/taucs-2.2-missing-include.patch
new file mode 100644
index 000000000000..b5186aef3911
--- /dev/null
+++ b/sci-libs/taucs/files/taucs-2.2-missing-include.patch
@@ -0,0 +1,36 @@
+I don't know why he uses number of arguments to distinguish if
+it's windows or not. Add correct header, section off wrong
+mkdirs on Windows
+https://bugs.gentoo.org/898294
+--- a/configurator/taucs_config.c
++++ b/configurator/taucs_config.c
+@@ -1,6 +1,7 @@
+ #include <stdio.h>
+ #include <stdlib.h>
+ #include <string.h>
++#include <sys/stat.h>
+ 
+ #include "taucs_structure.h"
+ 
+@@ -242,8 +242,10 @@
+     sprintf(name,"%s%c%s",  configdir,pathsep,ostype);
+ 
+   if (win32) {
++#if defined _WIN32 || defined __CYGWIN__
+     mkdir(configdir);
+     mkdir(name);
++#endif
+   }
+   else {
+     mkdir(configdir,0777);
+@@ -301,8 +303,10 @@
+     sprintf(name,"%s%c%s",  configdir,pathsep,ostype);
+ 
+   if (win32) {
++#if defined _WIN32 || defined __CYGWIN__
+     mkdir(configdir);
+     mkdir(name);
++#endif
+   }
+   else {
+     mkdir(configdir,0777);
diff --git a/sci-libs/taucs/files/taucs-2.2.1-C23.patch b/sci-libs/taucs/files/taucs-2.2.1-C23.patch
new file mode 100644
index 000000000000..dec900f8603b
--- /dev/null
+++ b/sci-libs/taucs/files/taucs-2.2.1-C23.patch
@@ -0,0 +1,120 @@
+Port to C23. Various problems without the bug
+found in bumping package version
+--- a/src/taucs_ccs_ooc_llt.c
++++ b/src/taucs_ccs_ooc_llt.c
+@@ -281,7 +281,7 @@
+ 			       int            do_order,
+ 			       int            ipostorder[],
+ 			       double         given_mem,
+-			       void           (*sn_struct_handler)(),
++			       void           (*sn_struct_handler)(void* argument, int sn, int sn_up_size, int* sn_struct_ptr[]),
+ 			       void*          sn_struct_handler_arg
+ 			       )
+ {
+@@ -455,7 +455,7 @@
+ 				   int do_order,
+ 				   int do_column_to_sn_map,
+ 				   double given_mem,
+-				   void           (*sn_struct_handler)(),
++				   void           (*sn_struct_handler)(void* argument, int sn, int sn_up_size, int* sn_struct_ptr[]),
+ 				   void*          sn_struct_handler_arg
+ 				   )
+ {
+--- a/src/taucs_vaidya.c
++++ b/src/taucs_vaidya.c
+@@ -3046,7 +3046,7 @@
+   int row, col;
+   int *pi1 = 0; /* warning */
+   double x, y, min, max, not;
+-  byte bool=1;
++  byte Bool=1;
+   edge *p,*dummy, *pe ,*max_pe;
+   int count = 0;
+  
+@@ -3116,18 +3116,18 @@
+ 	  
+ 	  for(minrho=1;minrho<maxdist;minrho++)
+ 	    {
+-	      bool = 1;
++	      Bool = 1;
+ 	      for(k=0;k<min(j,classes);k++)
+ 		{
+ 		  if ((double)(findrho[(minrho+1)*classes+k]-findrho[minrho*classes+k]) > (findrho[minrho*classes+k])/x)
+-		    bool = 0;
++		    Bool = 0;
+ 		}
+-	      if (bool)
++	      if (Bool)
+ 		goto afterr;
+ 	    }
+ 	
+ 	afterr:
+-	  if (bool)
++	  if (Bool)
+ 	    {
+ 	      for(i=0;i<n;i++)
+ 		if ((d[i] <= minrho) && (d[i] != -1) )
+--- a/progs/direct.c
++++ b/progs/direct.c
+@@ -691,7 +691,6 @@
+   /***********************************************************/
+ 
+   if (A->flags & TAUCS_SINGLE) {
+-    float snrm2_();
+     int one = 1;
+ 
+     NormErr = 0.0;
+@@ -704,7 +703,6 @@
+   } 
+ 
+   if (A->flags & TAUCS_DOUBLE) {
+-    double dnrm2_();
+     int one = 1;
+ 
+     NormErr = 0.0;
+@@ -718,7 +716,6 @@
+ 
+ #ifdef TAUCS_CONFIG_DCOMPLEX
+   if (A->flags & TAUCS_DCOMPLEX) {
+-    double dznrm2_();
+     int one = 1;
+     double* pX  = (double*) Xz;
+     double* pNX = (double*) NXz;
+--- a/progs/direct_coverage.c
++++ b/progs/direct_coverage.c
+@@ -729,7 +729,6 @@
+   /***********************************************************/
+ 
+   if (A->flags & TAUCS_SINGLE) {
+-    float snrm2_();
+     int one = 1;
+ 
+     NormErr = 0.0;
+@@ -742,7 +741,6 @@
+   } 
+ 
+   if (A->flags & TAUCS_DOUBLE) {
+-    double dnrm2_();
+     int one = 1;
+ 
+     NormErr = 0.0;
+@@ -755,7 +753,6 @@
+   }
+ 
+   if (A->flags & TAUCS_DCOMPLEX) {
+-    double dznrm2_();
+     int one = 1;
+     double* pX  = (double*) Xz;
+     double* pNX = (double*) NXz;
+diff '--color=auto' -ur taucs-2.2.1.old/progs/test_cilk_snmf.c taucs-2.2.1/progs/test_cilk_snmf.c
+--- taucs-2.2.1.old/progs/test_cilk_snmf.c	2025-02-21 22:18:08.370013676 +0400
++++ taucs-2.2.1/progs/test_cilk_snmf.c	2025-02-21 22:18:37.175471226 +0400
+@@ -27,8 +27,6 @@
+ #define my_dnrm2 dnrm2
+ #endif
+ 
+-double my_dnrm2();
+-
+ int main()
+ {
+   int xyz = 30;
diff --git a/sci-libs/taucs/files/taucs-2.2.1-allocate-memory-in-test.patch b/sci-libs/taucs/files/taucs-2.2.1-allocate-memory-in-test.patch
new file mode 100644
index 000000000000..2aed8c1bc757
--- /dev/null
+++ b/sci-libs/taucs/files/taucs-2.2.1-allocate-memory-in-test.patch
@@ -0,0 +1,24 @@
+There may be more actions needed, before that memory was unallocated
+and nullptrs were dereferenced.
+--- a/progs/test_cilk_snmf.c
++++ b/progs/test_cilk_snmf.c
+@@ -54,6 +54,7 @@
+ 
+   Xd =(double*)malloc((A->n)*sizeof(double));
+   for(i=0; i<A->n; i++) (Xd)[i]=(float)((double)random()/RAND_MAX);
++  Bd =(double*)malloc((A->n)*sizeof(double));
+   taucs_ccs_times_vec(A,Xd,Bd);
+ 
+   taucs_ccs_order(A,&perm,&invperm,"metis");
+@@ -74,8 +75,11 @@
+     return 1;
+   }
+ 
++  PBd =(double*)malloc((A->n)*sizeof(double));
+   taucs_vec_permute(A->n,A->flags,Bd,PBd,perm);
++  NXd =(double*)malloc((A->n)*sizeof(double));
+   taucs_supernodal_solve_llt(L,PBd,NXd); /* direct solver */
++  PXd =(double*)malloc((A->n)*sizeof(double));
+   taucs_vec_ipermute(A->n,A->flags,PXd,NXd,perm);
+ 
+   {
diff --git a/sci-libs/taucs/metadata.xml b/sci-libs/taucs/metadata.xml
index db08cf08723b..dda4de5504d0 100644
--- a/sci-libs/taucs/metadata.xml
+++ b/sci-libs/taucs/metadata.xml
@@ -25,4 +25,7 @@
 		* Multilevel-Support-Graph Preconditioners.
 		* Utility Routines
 	</longdescription>
+	<upstream>
+		<remote-id type="github">sivantoledo/taucs</remote-id>
+	</upstream>
 </pkgmetadata>
diff --git a/sci-libs/taucs/taucs-2.2.1.ebuild b/sci-libs/taucs/taucs-2.2.1.ebuild
new file mode 100644
index 000000000000..c8bc53a1478d
--- /dev/null
+++ b/sci-libs/taucs/taucs-2.2.1.ebuild
@@ -0,0 +1,84 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit fortran-2 toolchain-funcs
+
+DESCRIPTION="C library of sparse linear solvers"
+HOMEPAGE="https://github.com/sivantoledo/taucs/"
+SRC_URI="https://github.com/sivantoledo/taucs/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc"
+RESTRICT="test"
+
+RDEPEND="
+	sci-libs/metis
+	virtual/blas
+	virtual/lapack"
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
+
+PATCHES=(
+	# bug 725588
+	"${FILESDIR}"/${PN}-2.2-respect-ar.patch
+	"${FILESDIR}"/${PN}-2.2-missing-include.patch
+	"${FILESDIR}"/${P}-C23.patch
+	"${FILESDIR}"/${P}-allocate-memory-in-test.patch
+)
+
+src_configure() {
+	cat > config/linux_shared.mk <<-EOF || die
+		AR=$(tc-getAR)
+		FC=$(tc-getFC)
+		CC=$(tc-getCC)
+		LD=$(tc-getFC)
+		RANLIB=$(tc-getRANLIB)
+		CFLAGS=${CFLAGS} -fPIC
+		FFLAGS=${FFLAGS} -fPIC
+		LDFLAGS=${LDFLAGS} -fPIC
+		LIBBLAS=$($(tc-getPKG_CONFIG) --libs blas)
+		LIBLAPACK=$($(tc-getPKG_CONFIG) --libs lapack)
+		LIBMETIS=$($(tc-getPKG_CONFIG) --libs metis)
+		LIBF77=
+	EOF
+	# no cat <<EOF because -o has a trailing space
+	cp config/linux.mk config/linux-musl.mk
+	cp config/linux_shared.mk config/linux-musl_shared.mk
+}
+
+src_compile() {
+	# not autotools configure. Uses difference in mkdir signature
+	# between windows and linux to recognize system.
+	CC="$(tc-getCC)" ./configure variant=_shared || die
+	emake
+
+	cd lib/linux$(usev elibc_musl -musl)_shared || die
+	$(tc-getFC) ${LDFLAGS} -shared -Wl,-soname=libtaucs.so.1 \
+		-Wl,--whole-archive libtaucs.a -Wl,--no-whole-archive \
+		$($(tc-getPKG_CONFIG) --libs blas lapack metis) \
+		-o libtaucs.so.1.0.0 \
+		|| die "shared lib linking failed"
+}
+
+src_test() {
+	LD_LIBRARY_PATH=lib/linux$(usev elibc_musl -musl)_shared \
+		./testscript variant=_shared || die "compile test failed"
+	if grep -q FAILED testscript.log; then
+		eerror "Test failed. See ${S}/testscript.log"
+		die "test failed"
+	fi
+}
+
+src_install() {
+	ln -s libtaucs.so.1.0.0 lib/linux$(usev elibc_musl -musl)_shared/libtaucs.so.1 || die
+	ln -s libtaucs.so.1 lib/linux$(usev elibc_musl -musl)_shared/libtaucs.so || die
+	dolib.so lib/linux$(usev elibc_musl -musl)_shared/libtaucs.so*
+
+	doheader build/*/*.h src/*.h
+
+	use doc && dodoc doc/*.pdf
+}