gentoo auto-resync : 16:09:2024 - 12:11:35

9 files changed, 118 insertions, 50 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index 67c15a36fa1a..f15c3a1d9fe4 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/caffe2/Manifest b/sci-libs/caffe2/Manifest
index 3e4882eeda9e..873f28ba7273 100644
--- a/sci-libs/caffe2/Manifest
+++ b/sci-libs/caffe2/Manifest
@@ -2,12 +2,12 @@ AUX caffe2-2.4.0-cpp-httplib.patch 414 BLAKE2B fabe646c86f4c6736600fa44733ab6ea2
 AUX caffe2-2.4.0-cstdint.patch 263 BLAKE2B 52705466cc1f170f7c6f6ef2474fd92b294e8a07e6ab640804efa38e7e0526a72e7ff51c3b214662cc586eac7118b768b1a40df62a133834d617d5c8f7a712db SHA512 22f3c024ca11fe4483263956825f8190245c61eb6f200d1466a734a927729a0e3bc244d77050c85403b469ea647046941b5ba42e59c4f6410f8c8fa192de4268
 AUX caffe2-2.4.0-libfmt-11.patch 1560 BLAKE2B 816201b6abc3ad4c4924c649905068306f3a0c674eab36fb6a6772b84d2bf0806dd55d586d6873952b0eac56afae00513966071a380b9e60eff3c668e6aec737 SHA512 acdc879f2ed8ae546a6ce4db1b63faba3b6672374c61940d58e0c2b747c4b0d8d38fb34a2e66f3805f9f328fd4e0115dd705b541871b2fd99a2782756ca583e5
 DIST caffe2-patches-20240809.tar.gz 15242 BLAKE2B 77503c61487e7d85cca5afcab9a6e638f9833a70861845638cf1b62bc492d7b6650e6db81d53ebb2f39c6313509250d339f725f04d03ec6dd23dd0cf70843d8c SHA512 74b3b0b6671b655ecac93f7436c4ed7cb0157a83aafbf6afcc0811e11cef341cd8f638db1a111bcbb01e1a6dd4daf3a36b96d7a8ce90f04c2fa091bd6e3a142b
-DIST pytorch-2.2.2.tar.gz 116367503 BLAKE2B 0be22f2ec4b9aac6f5e976664cae01facf07929a32565cd57d7cc5b2d9888e9ae71ca301853752fe8f31d174d04c9974eb9ed2f3d452360a50ccf024f200726a SHA512 7990e0f9484038c3458c0bda2c863bf2b19e56edab81fc5938c6e0f08b17558287f853bb67350e8cca8f42bec0f1d4ba0e94e50a145db8da44bdd4bd703d91d0
 DIST pytorch-2.3.0.tar.gz 117029829 BLAKE2B 8f9c0d71ee0a9219b495eddccdcc65107f7ad537c43c68100b229f3d27b0e6c01ccb1659c7fffc356a48d80f2adc0a10361305dc8f1df20446de837d380f89f6 SHA512 67f7e9a096c3ffb952206ebf9105bedebb68c24ad82456083adf1d1d210437fcaa9dd52b68484cfc97d408c9eebc9541c76868c34a7c9982494dc3f424cfb07c
 DIST pytorch-2.3.1.tar.gz 117035696 BLAKE2B d419d7fa1342f1fb317ffce09ec9dc1447414627cc83d36578fe60f68c283c620b2b4d49f414cd206d537b90b16432a06cd1941662720db05d5e2b6c493325f5 SHA512 e1bcae44f9939fc7ccb1360a9b1970d92426f25e5de73e36964df3dd15ad5d8d9f5bd2f9a7dda6b8f64e2bba3674005bd869f542489cc442ad0125a02676f587
 DIST pytorch-2.4.0.tar.gz 115031093 BLAKE2B d206477963977011627df284efa01482fbf57e9fcb5f58f51d679c742b8e5dde6aa6affd8745ab817fcd09477d129a81e74e07be576b5d3585eaca1c735b8e01 SHA512 804d25944035f33de6591fd942fbda44d3de037717a4397d38a97474b01775d30eaf93d16dd708a832c0119050d24d73b90990fd3e3773be79d26ada25244d22
-EBUILD caffe2-2.2.2-r1.ebuild 7494 BLAKE2B f09d96b6a6ab71366a3b30ac7f8e6d89a20bf6034fb0d055a59f7f1d31f2dd08742307790982ed1f2768305ccea094e5d1655a2ac7d6e91e24b5620c1ed3f0cd SHA512 a10afef393275946a0fa51b2303a1ceaf567e7df30ff96bdf3343d929c575038945f404cd75118d7f40f49ed8d03ef66a2d8a3aef10ede1b4b411f0efee2e56e
+DIST pytorch-2.4.1.tar.gz 115029469 BLAKE2B c2909ff27d527bc57cba56b780d3b8cd07a043ab045caa6c6b27857a16f9ad10aaab2116b26226b1e46ee08ffb44007965d914464418e4ae14ca48c3f3f383bb SHA512 7e9b4485e242eaf0d648765c6621d73d95e7107b766646a098175436d1ab2e2b864badd0757a3bab6b7c318233f2120bad9ac07b39bb9e357897919580c87631
 EBUILD caffe2-2.3.0-r3.ebuild 8468 BLAKE2B b3e5d3bdd08fb7c2beabb0de3244b9de125b283ebd2a1d8dbccdc863b912555726eb40649d67af8593eb64dc9e23f9d021174a0868751fb3a5daf26d98884740 SHA512 6123ad17b0b1de6bd8d8ae3a52a7f7205385e3d54faa5f2fdf4006a9255ac69413caf08f4ba2c79679edadbe5c94cb7c187d5b5f2dc3ed6682d7ae601881e86b
 EBUILD caffe2-2.3.1.ebuild 8489 BLAKE2B 64b0ff8a65f46be8d3a80b4b4c47fb513eaaf78208e2d831ced3fcfa27f39cfa89d8648a64dea73a8b516476867f10cd04a4cb1873149659abe6114f88657ef4 SHA512 4bcb6fe1c3ab47879e57a453649866f8e5bf09da7cce6778de909447d6deb0ae0671512a1d182f5e275d246bb05c4553ff95bed490d4fd3f723653feae95b47e
 EBUILD caffe2-2.4.0-r1.ebuild 8334 BLAKE2B f904d32b44211fceaaee3ac78379980ff753c8487a9f0afb89eddb01b0ec3533ea5cb1b84f59e2aee83960e8a487bb360b2ca99f151b2b3f30f3d0b4cd2bc432 SHA512 3edc1603fed4db66ea6e3a908508739bb2dcb49b816b5980abc1054af027caa5e61e918129e3de283adb07bbcdc3f30c9cf37024cf1e24ac5d1db7c87390e084
+EBUILD caffe2-2.4.1.ebuild 8348 BLAKE2B b958c7fc23bc4dba1b0e4bfc1369faabfabd2950fdd706ca5776eb09fdd3e27e3b504ab4c5f7ac8a32e3e8212ed27ba07abc6309101afb8d1e4226abca49a728 SHA512 24af855f818a0078ef23b8f06d2622efbfc8dfec27e5088b83dc056052a0ccc8a3103fc66c166d1053bfd817441aaffd53fe0f64c2168ed7456e036a005dae24
 MISC metadata.xml 1225 BLAKE2B ab7fb0bf8b2d37ddaa1a9ecc815eb094e85465d20d3a30af081b42e0b60ade9858d0053b101ba0e7750a90cb48b5b79db9bdc2729bf66d0420732489da62fe54 SHA512 dfb58597fb4bcdd7df0fcc3f2514518e118e8fc9b1cd24868aab60c32a62ff419b8b72a7c294925eff4c8871cc8df606af7fa60bfa99901091d8195101ee1153
diff --git a/sci-libs/caffe2/caffe2-2.2.2-r1.ebuild b/sci-libs/caffe2/caffe2-2.4.1.ebuild
index 773808bc4f76..6af5a5c2e4c4 100644
--- a/sci-libs/caffe2/caffe2-2.2.2-r1.ebuild
+++ b/sci-libs/caffe2/caffe2-2.4.1.ebuild
@@ -4,8 +4,8 @@
 EAPI=8
 
 PYTHON_COMPAT=( python3_{10..12} )
-ROCM_VERSION=5.7
-inherit python-single-r1 cmake cuda flag-o-matic prefix rocm
+ROCM_VERSION=6.1
+inherit python-single-r1 cmake cuda flag-o-matic prefix rocm toolchain-funcs
 
 MYPN=pytorch
 MYP=${MYPN}-${PV}
@@ -21,15 +21,17 @@ S="${WORKDIR}"/${MYP}
 LICENSE="BSD"
 SLOT="0"
 KEYWORDS="~amd64"
-IUSE="cuda distributed fbgemm ffmpeg gloo mkl mpi nnpack +numpy onednn openblas opencl opencv openmp qnnpack rocm xnnpack"
+IUSE="cuda distributed fbgemm flash gloo mkl mpi nnpack +numpy onednn openblas opencl openmp qnnpack rocm xnnpack"
 RESTRICT="test"
 REQUIRED_USE="
 	${PYTHON_REQUIRED_USE}
-	ffmpeg? ( opencv )
 	mpi? ( distributed )
 	gloo? ( distributed )
 	?? ( cuda rocm )
-	rocm? ( || ( ${ROCM_REQUIRED_USE} ) )
+	rocm? (
+		|| ( ${ROCM_REQUIRED_USE} )
+		!flash
+	)
 "
 
 # CUDA 12 not supported yet: https://github.com/pytorch/pytorch/issues/91122
@@ -39,6 +41,7 @@ RDEPEND="
 	>=dev-cpp/glog-0.5.0
 	dev-libs/cpuinfo
 	dev-libs/libfmt
+	dev-cpp/opentelemetry-cpp
 	dev-libs/protobuf:=
 	dev-libs/pthreadpool
 	dev-libs/sleef
@@ -46,12 +49,11 @@ RDEPEND="
 	sci-libs/onnx
 	sci-libs/foxi
 	cuda? (
-		=dev-libs/cudnn-8*
-		>=dev-libs/cudnn-frontend-0.9.2:0/8
+		dev-libs/cudnn
+		>=dev-libs/cudnn-frontend-1.0.3:0/8
 		<dev-util/nvidia-cuda-toolkit-12.4.0:=[profiler]
 	)
 	fbgemm? ( >=dev-libs/FBGEMM-2023.12.01 )
-	ffmpeg? ( media-video/ffmpeg:= )
 	gloo? ( sci-libs/gloo[cuda?] )
 	mpi? ( virtual/mpi )
 	nnpack? ( sci-libs/NNPACK )
@@ -60,54 +62,71 @@ RDEPEND="
 		') )
 	onednn? ( dev-libs/oneDNN )
 	opencl? ( virtual/opencl )
-	opencv? ( media-libs/opencv:= )
-	qnnpack? ( sci-libs/QNNPACK )
+	qnnpack? (
+		!sci-libs/QNNPACK
+		dev-cpp/gemmlowp
+	)
 	rocm? (
-		=dev-util/hip-5.7*
-		=dev-libs/rccl-5.7*[${ROCM_USEDEP}]
-		=sci-libs/rocThrust-5.7*[${ROCM_USEDEP}]
-		=sci-libs/rocPRIM-5.7*[${ROCM_USEDEP}]
-		=sci-libs/hipBLAS-5.7*[${ROCM_USEDEP}]
-		=sci-libs/hipFFT-5.7*[${ROCM_USEDEP}]
-		=sci-libs/hipSPARSE-5.7*[${ROCM_USEDEP}]
-		=sci-libs/hipRAND-5.7*[${ROCM_USEDEP}]
-		=sci-libs/hipCUB-5.7*[${ROCM_USEDEP}]
-		=sci-libs/hipSOLVER-5.7*[${ROCM_USEDEP}]
-		=sci-libs/miopen-5.7*[${ROCM_USEDEP}]
-		=dev-util/roctracer-5.7*[${ROCM_USEDEP}]
+		=dev-util/hip-6.1*
+		=dev-libs/rccl-6.1*[${ROCM_USEDEP}]
+		=sci-libs/rocThrust-6.1*[${ROCM_USEDEP}]
+		=sci-libs/rocPRIM-6.1*[${ROCM_USEDEP}]
+		=sci-libs/hipBLAS-6.1*[${ROCM_USEDEP}]
+		=sci-libs/hipFFT-6.1*[${ROCM_USEDEP}]
+		=sci-libs/hipSPARSE-6.1*[${ROCM_USEDEP}]
+		=sci-libs/hipRAND-6.1*[${ROCM_USEDEP}]
+		=sci-libs/hipCUB-6.1*[${ROCM_USEDEP}]
+		=sci-libs/hipSOLVER-6.1*[${ROCM_USEDEP}]
+		=sci-libs/miopen-6.1*[${ROCM_USEDEP}]
+		=dev-util/roctracer-6.1*[${ROCM_USEDEP}]
+
+		=sci-libs/hipBLASLt-6.1*
+		amdgpu_targets_gfx90a? ( =sci-libs/hipBLASLt-6.1*[amdgpu_targets_gfx90a] )
+		amdgpu_targets_gfx940? ( =sci-libs/hipBLASLt-6.1*[amdgpu_targets_gfx940] )
+		amdgpu_targets_gfx941? ( =sci-libs/hipBLASLt-6.1*[amdgpu_targets_gfx941] )
+		amdgpu_targets_gfx942? ( =sci-libs/hipBLASLt-6.1*[amdgpu_targets_gfx942] )
 	)
-	distributed? ( sci-libs/tensorpipe[cuda?] )
-	xnnpack? ( >=sci-libs/XNNPACK-2022.12.22 )
+	distributed? (
+		sci-libs/tensorpipe[cuda?]
+		dev-cpp/cpp-httplib
+	)
+	xnnpack? ( >=sci-libs/XNNPACK-2024.02.29 )
 	mkl? ( sci-libs/mkl )
 	openblas? ( sci-libs/openblas )
 "
 DEPEND="
 	${RDEPEND}
-	cuda? ( >=dev-libs/cutlass-3.1.0 )
+	cuda? ( >=dev-libs/cutlass-3.4.1 )
 	onednn? ( sci-libs/ideep )
 	dev-libs/psimd
 	dev-libs/FP16
 	dev-libs/FXdiv
 	dev-libs/pocketfft
 	dev-libs/flatbuffers
-	>=sci-libs/kineto-0.4.0_p20231031
+	>=sci-libs/kineto-0.4.0_p20240525
 	$(python_gen_cond_dep '
 		dev-python/pyyaml[${PYTHON_USEDEP}]
 		dev-python/pybind11[${PYTHON_USEDEP}]
+		dev-python/typing-extensions[${PYTHON_USEDEP}]
 	')
 "
 
 PATCHES=(
-	../patches/${PN}-2.2.1-gentoo.patch
-	../patches/${PN}-1.13.0-install-dirs.patch
+	../patches/${PN}-2.4.0-gentoo.patch
+	../patches/${PN}-2.4.0-install-dirs.patch
 	../patches/${PN}-1.12.0-glog-0.6.0.patch
 	../patches/${PN}-1.13.1-tensorpipe.patch
-	../patches/${PN}-2.0.0-gcc13.patch
-	../patches/${PN}-2.0.0-cudnn_include_fix.patch
+	../patches/${PN}-2.3.0-cudnn_include_fix.patch
 	../patches/${PN}-2.1.2-fix-rpath.patch
-	../patches/${PN}-2.1.2-fix-openmp-link.patch
-	../patches/${PN}-2.1.2-rocm-fix-std-cpp17.patch
-	../patches/${P}-musl.patch
+	../patches/${PN}-2.4.0-fix-openmp-link.patch
+	../patches/${PN}-2.4.0-rocm-fix-std-cpp17.patch
+	../patches/${PN}-2.2.2-musl.patch
+	../patches/${PN}-2.4.0-exclude-aotriton.patch
+	../patches/${PN}-2.3.0-fix-rocm-gcc14-clamp.patch
+	../patches/${PN}-2.3.0-fix-libcpp.patch
+	"${FILESDIR}"/${PN}-2.4.0-libfmt-11.patch
+	"${FILESDIR}"/${PN}-2.4.0-cpp-httplib.patch
+	"${FILESDIR}"/${PN}-2.4.0-cstdint.patch
 )
 
 src_prepare() {
@@ -171,39 +190,38 @@ src_configure() {
 		-DUSE_MPI=$(usex mpi)
 		-DUSE_FAKELOWP=OFF
 		-DUSE_FBGEMM=$(usex fbgemm)
-		-DUSE_FFMPEG=$(usex ffmpeg)
+		-DUSE_FLASH_ATTENTION=$(usex flash)
+		-DUSE_MEM_EFF_ATTENTION=OFF
 		-DUSE_GFLAGS=ON
 		-DUSE_GLOG=ON
 		-DUSE_GLOO=$(usex gloo)
 		-DUSE_KINETO=OFF # TODO
-		-DUSE_LEVELDB=OFF
 		-DUSE_MAGMA=OFF # TODO: In GURU as sci-libs/magma
 		-DUSE_MKLDNN=$(usex onednn)
 		-DUSE_NNPACK=$(usex nnpack)
-		-DUSE_QNNPACK=$(usex qnnpack)
 		-DUSE_XNNPACK=$(usex xnnpack)
 		-DUSE_SYSTEM_XNNPACK=$(usex xnnpack)
 		-DUSE_TENSORPIPE=$(usex distributed)
-		-DUSE_PYTORCH_QNNPACK=OFF
+		-DUSE_PYTORCH_QNNPACK=$(usex qnnpack)
 		-DUSE_NUMPY=$(usex numpy)
 		-DUSE_OPENCL=$(usex opencl)
-		-DUSE_OPENCV=$(usex opencv)
 		-DUSE_OPENMP=$(usex openmp)
 		-DUSE_ROCM=$(usex rocm)
 		-DUSE_SYSTEM_CPUINFO=ON
 		-DUSE_SYSTEM_PYBIND11=ON
 		-DUSE_UCC=OFF
 		-DUSE_VALGRIND=OFF
-		-DPYBIND11_PYTHON_VERSION="${EPYTHON#python}"
-		-DPYTHON_EXECUTABLE="${PYTHON}"
+		-DPython_EXECUTABLE="${PYTHON}"
 		-DUSE_ITT=OFF
 		-DUSE_SYSTEM_PTHREADPOOL=ON
+		-DUSE_SYSTEM_PSIMD=ON
 		-DUSE_SYSTEM_FXDIV=ON
 		-DUSE_SYSTEM_FP16=ON
 		-DUSE_SYSTEM_GLOO=ON
 		-DUSE_SYSTEM_ONNX=ON
 		-DUSE_SYSTEM_SLEEF=ON
-		-DUSE_METAL=OFF
+		-DUSE_PYTORCH_METAL=OFF
+		-DUSE_XPU=OFF
 
 		-Wno-dev
 		-DTORCH_INSTALL_LIB_DIR="${EPREFIX}"/usr/$(get_libdir)
@@ -236,6 +254,14 @@ src_configure() {
 			-DUSE_NCCL=ON
 			-DUSE_SYSTEM_NCCL=ON
 		)
+
+		# ROCm libraries produce too much warnings
+		append-cxxflags -Wno-deprecated-declarations -Wno-unused-result
+
+		if tc-is-clang; then
+			# fix mangling in LLVM: https://github.com/llvm/llvm-project/issues/85656
+			append-cxxflags -fclang-abi-compat=17
+		fi
 	fi
 
 	if use onednn; then
diff --git a/sci-libs/dsdp/Manifest b/sci-libs/dsdp/Manifest
index f51571ebb4cc..5e17ec02b877 100644
--- a/sci-libs/dsdp/Manifest
+++ b/sci-libs/dsdp/Manifest
@@ -2,5 +2,5 @@ AUX dsdp-5.8-gold.patch 342 BLAKE2B a0cc333fed3f2b1ebdeccc439c0b98f9956bc64ac105
 AUX dsdp-5.8-malloc.patch 212 BLAKE2B d030d01bc49aa275c2f0eed48c1808e17877120587dedcf72fb07f737e44953df8c28d2ba6a5a443b372f56c036f9f44e1841a209b383ddab892ff8ef4e0f01d SHA512 a4c324beadb7298c9c8709115c83975d10b359b792042047439631f478fc99648b9348715645cd34d893fe9b6b49b6ba8e628771cde0e007eb0b1f474dd1fd7f
 AUX dsdp-5.8-readsdpa.patch 495 BLAKE2B 538ca4b9986cb5ed74ecb8510f8de23ecace871111140d394ae982e9932b9a733f2355199deb28cdf88addd0e18939b6a4e22b737a65438dc12e0a36e93d885c SHA512 43b329526f3b7d4761f7dfa44d62f94a843491bf9998f2f839edc880cdd8d04d1c8c7187213eda887025a9f3cdbff19afba6720cd2d70580b0e2dcb9512f8f90
 DIST DSDP5.8.tar.gz 2608518 BLAKE2B d464db2956080a33c300520ed291e1b45aeedd28378d5aab753977688bfe74d953f1d40a7aa10c2af8b70808d97dc5ece0c98d2795f707a9a3d2128302658286 SHA512 0a32a34e33dcac151e95ed0f8cee62603bbe2b4ba1e448bba35324fe576376cb33c15908cde61ae5a7c0dcdea945f1ec544f19b3dd36524158573260182e080e
-EBUILD dsdp-5.8-r4.ebuild 2348 BLAKE2B 11a061fd889bd1ccb98490ec5b26dd0c3a9ce0b5b280380602100c0f1054c18fe06fd9c38be617937354deca4cca969f3aaba8fb6ca48cf2a60352a5c1b6e201 SHA512 de7b3a461173bc55c3011960287c218b7ad3de2d921e1d3acbc267a47197c20ec19f2092d9ad855ae63cb76b975e0adda9000c6123233bd2988763f8da8ce4a4
+EBUILD dsdp-5.8-r4.ebuild 2347 BLAKE2B 6afb96e2dd0acfc131cc4283fecef943d598b56d0d94684e28fd695052abfea4ec7a81369f4966f8d7646a774c8c306d985624b2a0ac1f22ded895b0e3e71e3e SHA512 22f77a715d0e124398c0ed9dfa112393f8e191737115bdf81444dc51a842d5fb9a98e25928d52f388b9c4f68468f17b4761f73d1257270668efd80cc4477ccb4
 MISC metadata.xml 1247 BLAKE2B a16963bce23be7c86668f69d4f7da2eddbafa59aca0f7c02624dde51a87a79f8cab972509ff63aee66cde41767f91181e0f67310fc2e08f52eba8cf31aebf102 SHA512 357a53f66ebafc58279b6af27d833ca154805bcf626c7d719c3041ed701609b509ee35e393e7218fe54e97aef6873b4484367daed861f6a17cb563d9a4dcaad3
diff --git a/sci-libs/dsdp/dsdp-5.8-r4.ebuild b/sci-libs/dsdp/dsdp-5.8-r4.ebuild
index ac3c51fb830b..21372fe110e7 100644
--- a/sci-libs/dsdp/dsdp-5.8-r4.ebuild
+++ b/sci-libs/dsdp/dsdp-5.8-r4.ebuild
@@ -14,7 +14,7 @@ S=${WORKDIR}/${MY_P}
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos"
 IUSE="doc examples"
 
 RDEPEND="virtual/lapack"
diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 166eaa3e3854..091189eaa03f 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -2,6 +2,9 @@ DIST libcifpp-5.2.2-components.cif.xz 60754468 BLAKE2B 899120c2d6749fb2da9be94de
 DIST libcifpp-5.2.2.tar.gz 2277238 BLAKE2B a31af09bed7f1dbd6f610e104f0a8439742c863bc58b3680c058cb570a1f93fbcd6d23f29a372aafbb7166a4d86b2590cd24e092b1cc7af25bd09bbe437c93eb SHA512 2bbe9b13fd0ce8f686b5fa9e1675a41cc37c954cd9d80326fcc7c5f4c767be95dd71f6ddc3e841b6102214cd66205303515fa0750683e539f48b038a32a51af9
 DIST libcifpp-7.0.4-components.cif.xz 62591092 BLAKE2B f5fc502cfb0d5c33c2218a02ccbf652c87f0d9d0ac93a8f2eb7c5a7e1e301555cb641f3df815fefbb998ca00f0b04f4fd39de2023dd69ca88de29a814208cd70 SHA512 6f85b84b9e4c63b134dedbc41a6a3ba4a7bec6a66b0ce1fcc9248c06b3e5600b8fe31c5ed72722cb40cb431227f17bb9f485e7b471c84efa313b04adfb161ec2
 DIST libcifpp-7.0.4.tar.gz 2598838 BLAKE2B db6e4b1573d243c511f15ea1fc28867c8a57eb1050c24a59c12a4608b59890ee567569ca4035daead7e74d206a77bb280c56d54ef8b050fe297ccd75cf48ffeb SHA512 6957b3e3ace855c22923391cfd05db40399b6b84fb194ccceaf7b460493ee8576573056296eb06fecf9e6e83c590776fdd5a09f06bb316de61f44468d2a53392
+DIST libcifpp-7.0.5-components.cif.xz 65274864 BLAKE2B e39ff3d84c8a6977eb505dd68f729261e9caea58b254dc547ddc375a6e9501903aca3886b1ab31f7843251bb430f8b7ed2b27735eae60152e5b54149ec1c0f1a SHA512 f6320df7b839f10282d7c86c865597f201ea3a75c9c95cc69b1526062bb0b57bd37562545560aad2c5549937069ff3ea3e580466aaca8a8af1c736a34554ba98
+DIST libcifpp-7.0.5.tar.gz 2648187 BLAKE2B 700cc68efb355a8e32a81b4ad9acbac0ad31760935ff664663a96e82c6ca74307f43a3c4ea378362c7fdb97deb73bb81021e9da3dd1b528d6eae98dec0a6e4aa SHA512 be4600dfaeb7211728d98caa283904407d0314aca52e63038a218b12d88ef331ad8de2a00d0e610781fa6dce5328d602e65fec9c40d4dd132b6aaed9dd0acf2b
 EBUILD libcifpp-5.2.2.ebuild 893 BLAKE2B c581661af0f35cf4593654dbd915e9eb31fa464790be260faec7924104a341922a95e209415af57462d72f27867b9124af84865a82261cda04231ea37b0b47e2 SHA512 dac5c593845e0274ea86e88805cbe240096529ceb977fafa941d11de6c03618ea8c63eabbe01d6dfdbdf03325de03f380b8d8ad610221516bd48c29fe1de58a7
 EBUILD libcifpp-7.0.4.ebuild 1055 BLAKE2B 68150419ce2e7e5ab7b976715e622c01a220ba24e0b846c2102c3c9629590f75f6509c36a5565141e9b29d9c014c23ae3ba9a30429ce165936853071840ba4bf SHA512 206748d242530272a826045e09d96341498511bb90ffd1664454211ac38f8496a2cb0eab8170440a494a7fd4f7e72f324ccfe701ca88a0c43e2cfa9622f17f84
+EBUILD libcifpp-7.0.5.ebuild 916 BLAKE2B 70ab740e5a42b03a7d736d67aa0e72815cdf5adfde93bc3aa794cd73adeaf54cdf63d95797812a3b805c79c1b3a58670a2cb4c5b70b920ef54aa5d19745d6f63 SHA512 08fb4784be4887437753ea3debf5b999f69f147e40b89892bd6396be3680bfd5b04d9d44133a896802338e5a1bc4e3c95500f3ab4a5f5e629c87391c07e1a290
 MISC metadata.xml 299 BLAKE2B 88091a7fbc350db0c22800bcd0de80ec406f7b8a0187b29d8660978384179f8194f7aa794bf0bd3b3f4ab68ac662ca62479319e218d2622e2a3e470653848251 SHA512 e6bc610ae1cf40584ba3067ece0c0c85d08ad0bbb99f5ecd8281c41b04ff932db838926a6ff238794ff46eb8035eb57c750e088bd3f164180952a9e597544e14
diff --git a/sci-libs/libcifpp/libcifpp-7.0.5.ebuild b/sci-libs/libcifpp/libcifpp-7.0.5.ebuild
new file mode 100644
index 000000000000..855615bcc0ce
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-7.0.5.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp"
+# Update components file on every bump
+# https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
+SRC_URI="
+	https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz
+	https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+	>=dev-cpp/eigen-3.4.0:3
+	dev-libs/boost:=
+	sys-libs/zlib
+	test? ( dev-cpp/catch:0 )
+"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+	cp "${WORKDIR}"/${P}-components.cif rsrc/components.cif || die
+
+	local mycmakeargs=(
+		-DBUILD_SHARED_LIBS=ON
+		-DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+		-DBUILD_TESTING="$(usex test)"
+	)
+	cmake_src_configure
+}
diff --git a/sci-libs/pytorch/Manifest b/sci-libs/pytorch/Manifest
index 54c472774d2d..60dc82959945 100644
--- a/sci-libs/pytorch/Manifest
+++ b/sci-libs/pytorch/Manifest
@@ -7,12 +7,12 @@ AUX pytorch-2.2.1-emptyso.patch 464 BLAKE2B 8c93245f36218a63a910ddf41e1181c83306
 AUX pytorch-2.4.0-dontbuildagain.patch 416 BLAKE2B 42d62ba2342a32a7eb0a8062750cd59ca9ebd6085b06f6751ac884c7daaf6d4a36373290403c02da7bd8d96e409cb7f57fc601cab4bace45613b3f7a14892c24 SHA512 a844b68faf11072b6e2b7d23cd17fff21cb96226f72dc6b52ec5d4f98d48beebcb341b3528b70c89e831e6de0aecefd01e3ad3f41c05347114ca8c19bd31c34d
 AUX pytorch-2.4.0-global-dlopen.patch 887 BLAKE2B 044e7708619070f93b1157a0c4e560dadda88b299c32023f4f953711201c308966e07dc6c8a34ed9f56cd6ee4b02d5870fd3637365f83f98444695f5747ca7cb SHA512 091b353b33a5d8496836adcafba7f0c04f2085ddbd33bf1fda8222a4afdf2c5b12bed53c26140f22442a1a77c465b326f603de02837f6d214f16dfae01c56417
 AUX pytorch-2.4.0-torch_shm_manager.patch 367 BLAKE2B f03c002cbd50fb959dfc3ccf89cb8aa9fe6e001ff2cb47bee45cde28cac262e20df1d06f396776ce069f0a9e92cd370c96788db0aa5d1b9d9f3bc1832701502a SHA512 94f095908385b3058863d05a78a0e243f8614bbde406d457e50bdba574a8e1911b77790a0806f705644dc0c0ae235888314ea4a31aed7c0eb8ddfb29ff42636e
-DIST pytorch-2.2.2.tar.gz 116367503 BLAKE2B 0be22f2ec4b9aac6f5e976664cae01facf07929a32565cd57d7cc5b2d9888e9ae71ca301853752fe8f31d174d04c9974eb9ed2f3d452360a50ccf024f200726a SHA512 7990e0f9484038c3458c0bda2c863bf2b19e56edab81fc5938c6e0f08b17558287f853bb67350e8cca8f42bec0f1d4ba0e94e50a145db8da44bdd4bd703d91d0
 DIST pytorch-2.3.0.tar.gz 117029829 BLAKE2B 8f9c0d71ee0a9219b495eddccdcc65107f7ad537c43c68100b229f3d27b0e6c01ccb1659c7fffc356a48d80f2adc0a10361305dc8f1df20446de837d380f89f6 SHA512 67f7e9a096c3ffb952206ebf9105bedebb68c24ad82456083adf1d1d210437fcaa9dd52b68484cfc97d408c9eebc9541c76868c34a7c9982494dc3f424cfb07c
 DIST pytorch-2.3.1.tar.gz 117035696 BLAKE2B d419d7fa1342f1fb317ffce09ec9dc1447414627cc83d36578fe60f68c283c620b2b4d49f414cd206d537b90b16432a06cd1941662720db05d5e2b6c493325f5 SHA512 e1bcae44f9939fc7ccb1360a9b1970d92426f25e5de73e36964df3dd15ad5d8d9f5bd2f9a7dda6b8f64e2bba3674005bd869f542489cc442ad0125a02676f587
 DIST pytorch-2.4.0.tar.gz 115031093 BLAKE2B d206477963977011627df284efa01482fbf57e9fcb5f58f51d679c742b8e5dde6aa6affd8745ab817fcd09477d129a81e74e07be576b5d3585eaca1c735b8e01 SHA512 804d25944035f33de6591fd942fbda44d3de037717a4397d38a97474b01775d30eaf93d16dd708a832c0119050d24d73b90990fd3e3773be79d26ada25244d22
-EBUILD pytorch-2.2.2.ebuild 1616 BLAKE2B 3817dd668463c3393fc6227809644cc7409cdcb099b009571dde0760f67bcf0bb36da6d8c24e1d99be57899db9d6fb57c34e07ac63248f471ff780d2f8164b65 SHA512 97530019b0f973fad14bcfc878669f4f8a1de3f4b2d65a8909a53d3ca32b0ba099a7ffccb9317eeb8d7d8e9bae1495d36dec3896f1f54ee260ad6af89796c86c
+DIST pytorch-2.4.1.tar.gz 115029469 BLAKE2B c2909ff27d527bc57cba56b780d3b8cd07a043ab045caa6c6b27857a16f9ad10aaab2116b26226b1e46ee08ffb44007965d914464418e4ae14ca48c3f3f383bb SHA512 7e9b4485e242eaf0d648765c6621d73d95e7107b766646a098175436d1ab2e2b864badd0757a3bab6b7c318233f2120bad9ac07b39bb9e357897919580c87631
 EBUILD pytorch-2.3.0.ebuild 1616 BLAKE2B 3817dd668463c3393fc6227809644cc7409cdcb099b009571dde0760f67bcf0bb36da6d8c24e1d99be57899db9d6fb57c34e07ac63248f471ff780d2f8164b65 SHA512 97530019b0f973fad14bcfc878669f4f8a1de3f4b2d65a8909a53d3ca32b0ba099a7ffccb9317eeb8d7d8e9bae1495d36dec3896f1f54ee260ad6af89796c86c
 EBUILD pytorch-2.3.1.ebuild 1616 BLAKE2B 3817dd668463c3393fc6227809644cc7409cdcb099b009571dde0760f67bcf0bb36da6d8c24e1d99be57899db9d6fb57c34e07ac63248f471ff780d2f8164b65 SHA512 97530019b0f973fad14bcfc878669f4f8a1de3f4b2d65a8909a53d3ca32b0ba099a7ffccb9317eeb8d7d8e9bae1495d36dec3896f1f54ee260ad6af89796c86c
 EBUILD pytorch-2.4.0.ebuild 1616 BLAKE2B 6d2b4012e2ee45eff08e7d38cd6f8177b94ae556337cde21fe5352aca2bbfeecda582159f45bb947d96775468aed2617eaf28cdc4d42e0e0d2cb2c662dbe70ed SHA512 a0ea63813cac1cdc2d23f99982574786417b8f9a829f7166be2b33eb9b2f7dcb20a174ca2a70bc7e887d415efea361a7491c1642b3bbeb68446a8cbee4ed4a1c
+EBUILD pytorch-2.4.1.ebuild 1616 BLAKE2B 6d2b4012e2ee45eff08e7d38cd6f8177b94ae556337cde21fe5352aca2bbfeecda582159f45bb947d96775468aed2617eaf28cdc4d42e0e0d2cb2c662dbe70ed SHA512 a0ea63813cac1cdc2d23f99982574786417b8f9a829f7166be2b33eb9b2f7dcb20a174ca2a70bc7e887d415efea361a7491c1642b3bbeb68446a8cbee4ed4a1c
 MISC metadata.xml 328 BLAKE2B f49c6d62ac88dfffe497ed05b1f727941a94acb87a809611dda8aedbd87508fdfdf94ec0e025cac2a649b0881b600236289943b4be0f6ca44fc105b6d8fbe97c SHA512 16c29d2c1177a89026235191ea3e33870c2e6b63f029b7febd4dbd2e99f598fab4b4fd2fa7a801ffd88393663a00752300e6e2cc847a83690b715bcc481d9dc2
diff --git a/sci-libs/pytorch/pytorch-2.2.2.ebuild b/sci-libs/pytorch/pytorch-2.4.1.ebuild
index 75fbde095842..31e3b0439a9d 100644
--- a/sci-libs/pytorch/pytorch-2.2.2.ebuild
+++ b/sci-libs/pytorch/pytorch-2.4.1.ebuild
@@ -36,10 +36,10 @@ DEPEND="${RDEPEND}
 
 src_prepare() {
 	eapply \
-		"${FILESDIR}"/${PN}-2.1.1-dontbuildagain.patch \
+		"${FILESDIR}"/${PN}-2.4.0-dontbuildagain.patch \
 		"${FILESDIR}"/pytorch-1.9.0-Change-library-directory-according-to-CMake-build.patch \
-		"${FILESDIR}"/${PN}-2.0.0-global-dlopen.patch \
-		"${FILESDIR}"/pytorch-1.7.1-torch_shm_manager.patch \
+		"${FILESDIR}"/${PN}-2.4.0-global-dlopen.patch \
+		"${FILESDIR}"/pytorch-2.4.0-torch_shm_manager.patch \
 		"${FILESDIR}"/${PN}-1.13.0-setup.patch \
 		"${FILESDIR}"/${PN}-2.2.1-emptyso.patch \