gentoo auto-resync : 02:05:2023 - 23:23:39

10 files changed, 41 insertions, 8 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index edfa2276f7ce..31d02d2eb4eb 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/gklib/Manifest b/sci-libs/gklib/Manifest
index 2670a4e8c7d2..fc0e9e1f8445 100644
--- a/sci-libs/gklib/Manifest
+++ b/sci-libs/gklib/Manifest
@@ -1,5 +1,5 @@
 AUX gklib-5.1.1_p20230327-multilib.patch 489 BLAKE2B d2b8abc381d79856032428469ac37f4763360bb9a7550246d07e85d4e4f3b81cc263cfcea255afe8bd619b05c886edac7641cdf45d3f739b270413eda8023422 SHA512 9a8bba4a397d6a1b11ba2d560c10141bffc866f9687c14fec426cfd531cfc1853c4ac88d03679a1aefbb6f23a3a1c0afef1a47b1fa806d4d6d3292f18f6fc79f
 AUX gklib-5.1.1_p20230327-respect-user-flags.patch 1626 BLAKE2B d8f574082e89cef6730515a696a0ca5b5eb32bbb408da586efa18c03f1f14641a75c251fa4aec9a03db6ed44a5841d68e7a64a635a779b5251ce6229b90dba86 SHA512 9b695774aa6a05e55e9a9a0e0c9a0736f925bd4112ec9af553f1aa90cc9298a5315a59c23670c2d200c3c27ed426ea960d13ec989403f5e5bf1c84503cb3bcb2
 DIST gklib-5.1.1_p20230327.tar.gz 186266 BLAKE2B f8c8bad20d98717141f748364614bfe95644dbaadf9370f3ad4751eb5a8f1cc7a429b42481af86bbe4df18541366e594d3b8d078305d2154f76928f587af91fc SHA512 128cd9a48047b18b8013288162556f0b0f1d81845f5445f7cc62590ab28c06ee0a6c602cc999ce268ab27237eca3e8295df6432d377e45071946b98558872997
-EBUILD gklib-5.1.1_p20230327-r1.ebuild 558 BLAKE2B 15d0243d33709461ce0e673499604000f447d8d65b20c15af27866bf96e97cfe363a96ee2a3232b81e46ad619213ad09e6337744b9cc0c1c0c97622cbc1ce26d SHA512 e43f5388c801bbc2a8d374afbeca30c5ee680ab82235c9eae76e29bea5db9757b19d9b62e33229888b997fadd974ff3b31e772bb6bc1956c38c495b95259232f
+EBUILD gklib-5.1.1_p20230327-r1.ebuild 563 BLAKE2B 5511d4d69410b9d6c25a873425928addb9f6143a6da99c24533f14bef9335a5e512680878c6130f55a3f2a9df3de6a13b6c18415087c4dee979f95730ee80966 SHA512 636310ab58859cf1af81c952b98739964d8ee9c414e411d073cbaf370f485d5b26e199a08483dddb07d5b35b86c37780fa70bc92d91233f9ecd7d8cc0f0e961b
 MISC metadata.xml 345 BLAKE2B ed029a8a99db5e74617a3ab6b4974355b9e09e8d7e1ab8357e20cb3910d0cc3dc944f9006cdc12365255e0cd2f0670f58b35ccbfb7673c0a62d7d0de4226fc1c SHA512 c41979157a88ac96f1b49dbcb926482036216e1985019548aabe2ef6b97be29372db4c4669bb5eb232296f0a060f48e6d4e87a29ba2a8ef2b3f9028431e6c345
diff --git a/sci-libs/gklib/gklib-5.1.1_p20230327-r1.ebuild b/sci-libs/gklib/gklib-5.1.1_p20230327-r1.ebuild
index 87573b9748ae..fb97bbd3e2ac 100644
--- a/sci-libs/gklib/gklib-5.1.1_p20230327-r1.ebuild
+++ b/sci-libs/gklib/gklib-5.1.1_p20230327-r1.ebuild
@@ -14,7 +14,7 @@ S="${WORKDIR}/GKlib-${COMMIT}"
 
 LICENSE="Apache-2.0"
 SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS="~amd64 ~x86"
 
 PATCHES=(
 	"${FILESDIR}/${P}-multilib.patch"
diff --git a/sci-libs/gmsh/Manifest b/sci-libs/gmsh/Manifest
index e418d519345b..aa5f94d6cb5a 100644
--- a/sci-libs/gmsh/Manifest
+++ b/sci-libs/gmsh/Manifest
@@ -1,8 +1,9 @@
+AUX gmsh-4.11.1_gcc13_fix_cstdint_include.patch 925 BLAKE2B 538287bb96f17b2e526b17c2e478732e82bde56a5cb1c74b9c55c7dff9cc63d1fe8ec345c4a06cef2370b76a9445271049df01bf4491f76b99f4a1c9f11e6c6c SHA512 22b08fd2937a416ce71aadda9570d2f9afeed5df6fadebc1504c84b61bf8da8b1015ad6ced0450da09a4b4026eca0cb0c34ddc0626a18652f0cb4a2c6553d9fa
 AUX gmsh-4.9.5-opencascade.patch 1136 BLAKE2B 3613e9a19c76c107eec2090a0a12474d94ac1d548cf6b5137644e3a7834c12a9a8c6dc63d217b8473c385b2ea5bd1ea3d9699e61cbc897bf7cdd121ba00bdff2 SHA512 3774335121ae1d7b4a2369b36e1dab84e9b08eb6336ad1ed6893e0b2260402cb750e202f0244d61c8772d809dd31d95adfb19d8deee5255185c968838e495cd5
 DIST gmsh-4.10.3-source.tgz 14994941 BLAKE2B b9229f81fc8daabdb3b3db3acd50a0a0e602fec1423bc67a0033a02217c908910eeb1f9bd1cbc57fe2d24b566f256b969fe92e9e9ceefe4cd5af34dd07cf1a9e SHA512 863c5a7fe13095afad37b4450855b2079d034222b5a595fc25b2b0d840d8ef63ceafbbf56ea642b3c3e9277faabe08a2cc19a7a3126a8e12e9d4117243244653
 DIST gmsh-4.11.1-source.tgz 17985611 BLAKE2B 087664cfbfec758eaa3740a65920ccf673dbcc97a1ef8010222da64b8c586334ed1a77904e94061bdf34e714aae34311ee4f6fb38740473046f99ad6c1e0984c SHA512 8f2a71d6db80dd6bacde6dc1ccd120c7f83609dd69a84a910455a21a43b7392cd7e0e7b4d37aaa6a1b1cbfdb816646cd4828d2ac6d784edba072167280432e4c
 DIST gmsh-4.9.5-source.tgz 14921704 BLAKE2B e805bd786154bf6ce8bebb2d2c38204a88d06a251c45fbe6dd37641a15e02291993c244f26a01faad2a6445a4852274e5481d4236b7a3d9b7ee65fc863f1b880 SHA512 4da61bdf03fb9466af80ac790e83c8888bab755c78d860d601474d7ebca220ac51cba620db310165021412dbecc1cf187ccdff47b8a78e0579339bb72cfa6484
 EBUILD gmsh-4.10.3.ebuild 2640 BLAKE2B 1f6024a0975aa77424196b68920194b90afaa5a61f44d79fb0537d89387d58dbdde98e5e737c27d48fb24e0a964dc758797f49e8a4288e30c2c6e5cc751ac3fc SHA512 dbf84d0b604dab486a3df0aaec9cb486f419204ae4f9bf6f11a9b53c7c733485827d6a9455100e6c9f036eeb067c9c5d7c399d6da5fa9aa8f11ed2416bd421ea
-EBUILD gmsh-4.11.1.ebuild 2943 BLAKE2B 44e0eedbc72ab64fb6743269f62664e177d8fe7d8617a965a048ce643b1f6ef09426ce3660d1de1836ae5f7d1352c860f74b329af2628a4d913d75ca5fa14db7 SHA512 4f7128422b4fa05c82709b36d8f920680abe8867d1ea8c0801ff8fc59ef1e57eeddd4e700a0685342525a48353fdc2d87d5c3f9a28547491ee0c21b11b9ec451
+EBUILD gmsh-4.11.1.ebuild 2996 BLAKE2B 90f1c8b55b85d85c514b03961431e8e7572025879cb70bd592a292f40115ce15035948a41db788301b63ec8469e8ae9a63fd58709338fff06767dd863aa59372 SHA512 889047836e947a1fe9c8eae1bbde44fa8686ee5413415ab773df90593e5afcc24dd4af419c6b0389582bc00b02608114063878530189974b64f41ecfbac5cb80
 EBUILD gmsh-4.9.5-r2.ebuild 1914 BLAKE2B 85a813c5316088e43ef614f818bab19241cd8b754734988ebcab164741b4cae5216d4a89aa2e652f1a91ebdf6fafce69f7c9821379e4efe639b3343c58b2b527 SHA512 4d8d6864de909f237320a92a162974425690d70121ba49537ce9a565c1e1368e8c321461ba8c2771e19e9ebcb3d779c591cacbd939bc70da3dca0e5c15f8c47f
 MISC metadata.xml 1271 BLAKE2B 7ea0644b5ffb89478ba859f0bbd33fa5fcc8ebb57e64f2ca6ccba8123e23b4a7a44626d5fb1bd416d99071557652b247e90cc05b11d50bdded732f41f2acc524 SHA512 013798cf979fcb7fb954490970abdfc6ebbe23e8263a22cf8791af21f593aa46b7348e7673fa7fa318ce3cb8436c2d58435911984b40be3dafda40253ebcc71c
diff --git a/sci-libs/gmsh/files/gmsh-4.11.1_gcc13_fix_cstdint_include.patch b/sci-libs/gmsh/files/gmsh-4.11.1_gcc13_fix_cstdint_include.patch
new file mode 100644
index 000000000000..2b1b491ef81f
--- /dev/null
+++ b/sci-libs/gmsh/files/gmsh-4.11.1_gcc13_fix_cstdint_include.patch
@@ -0,0 +1,29 @@
+# Based on upstream patches:
+# https://gitlab.onelab.info/gmsh/gmsh/-/commit/fb81a9c90
+# https://gitlab.onelab.info/gmsh/gmsh/-/commit/aceb09c80
+#
+# Upstream issue: https://gitlab.onelab.info/gmsh/gmsh/-/issues/2416
+# Gentoo issue: https://bugs.gentoo.org/905445
+
+diff -Naur a/contrib/QuadMeshingTools/qmtMeshGeometryOptimization.h b/contrib/QuadMeshingTools/qmtMeshGeometryOptimization.h
+--- a/contrib/QuadMeshingTools/qmtMeshGeometryOptimization.h
++++ b/contrib/QuadMeshingTools/qmtMeshGeometryOptimization.h
+@@ -8,6 +8,7 @@
+ #pragma once
+ 
+ #include <float.h>
++#include <cstdint>
+ #include "qmtMeshUtils.h"
+ 
+ class SurfaceProjector;
+diff -Naur a/src/mesh/meshGFacePack.cpp b/src/mesh/meshGFacePack.cpp
+--- a/src/mesh/meshGFacePack.cpp
++++ b/src/mesh/meshGFacePack.cpp
+@@ -8,6 +8,7 @@
+ #include <queue>
+ #include <map>
+ #include <vector>
++#include <cstdint>
+ #include "gmsh.h"
+ #include "SPoint2.h"
+ #include "SVector3.h"
diff --git a/sci-libs/gmsh/gmsh-4.11.1.ebuild b/sci-libs/gmsh/gmsh-4.11.1.ebuild
index 5bbf22a1c4b1..faf9c16b04ea 100644
--- a/sci-libs/gmsh/gmsh-4.11.1.ebuild
+++ b/sci-libs/gmsh/gmsh-4.11.1.ebuild
@@ -68,7 +68,10 @@ DEPEND="${RDEPEND}
 
 S="${WORKDIR}"/${P}-source
 
-PATCHES=( "${FILESDIR}"/${PN}-4.9.5-opencascade.patch )
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.9.5-opencascade.patch
+	"${FILESDIR}"/${P}_gcc13_fix_cstdint_include.patch
+)
 
 pkg_setup() {
 	fortran-2_pkg_setup
diff --git a/sci-libs/metis/Manifest b/sci-libs/metis/Manifest
index 2027ee0b0cdb..99515200d0cb 100644
--- a/sci-libs/metis/Manifest
+++ b/sci-libs/metis/Manifest
@@ -6,5 +6,5 @@ AUX metis-5.2.1-respect-user-flags.patch 1258 BLAKE2B aadf0612d276228bc0fc116534
 DIST metis-5.1.0.tar.gz 4984968 BLAKE2B c5f8ff552fce7e7cc02740e6197c9deb5e05e8bc2e2e56cad0cba85705eec6990b511182930c8758fd16a18015f54c8a4827038039bc3c58ee41df468ea175bc SHA512 deea47749d13bd06fbeaf98a53c6c0b61603ddc17a43dae81d72c8015576f6495fd83c11b0ef68d024879ed5415c14ebdbd87ce49c181bdac680573bea8bdb25
 DIST metis-5.2.1.tar.gz 4838377 BLAKE2B 7f2bb3b4dce71cd05e25d042095c311f814d5d197b1a6ae19994b6bcbb7d948d3a96210cbce5633f39d7bb8ad7cc3f8f4977c6465ec8591934aac00ea9637c94 SHA512 69127b7a777f9ba14cf399a7122000af9d6094a5f44be600a28384cfc0495c024fb0c6eab37c4473a5763ec1077cd9f30d9bcbb3c952462f6c9ead31c6b9e790
 EBUILD metis-5.1.0-r5.ebuild 1827 BLAKE2B b123d41eb74c449790c44b0f40d089feae705144876e23bc2862de24fecc54edc04e26b2a62007b4691249520b3a2e9c2c5fdf26f2b092e0b5d479adce7382b8 SHA512 853cd965c826ebb32de42da696ae0fbbe57fbefc1bd11db66f912611e53aeb870ef27a15cfced14519b9c452280a816bf88ee7edfaf82ac59afe9177d7453a21
-EBUILD metis-5.2.1.ebuild 2014 BLAKE2B ee781918ead05edfe75ced034b9346d44b251e656cfccd55103351ecf397db34acf65df0f2666f5e6202347350d2e8003e1f799d4a02b1c7d5d0e4470d929607 SHA512 3fb87b356eabc4d5f1585e5175cea3d4d4121d12903441a6af20e238ac1c8c1bd3db41e04444b6e113e220bc283c5e77b2395a00788767ab3a0f44c277ec34c7
+EBUILD metis-5.2.1.ebuild 2019 BLAKE2B 62aa05b5834ac24f4e0ea0da35efb2d27a6850cc736fb018c31ce63be3f0484d463b3fdf146dce8c94b0465a4913198208ee0c46ae89ff74eac1760133541025 SHA512 d1d4c5ec0023e3a04815f70a989b91fc0a31316d6018687be3bef9b36a87928e9273110479f119325f7cf695e1deb4121d7647be77fb6f3ad6d302cc028881b9
 MISC metadata.xml 947 BLAKE2B 9687c616dd1c8684be3fc1022671560ac5ff752514cbced0a3bb1bfc70348ecdb72c4913e65720a70f03609a1277c5a697e5985fb0cb8032d60e5c24f9b16674 SHA512 efa12e77a7af2803d0626eefc85aaaa5b2594fdfc748c8ad870590f65ae40ec7e557fa923707f327b8bb04036b57a67a036fed52ff9159af1fe65c062165408f
diff --git a/sci-libs/metis/metis-5.2.1.ebuild b/sci-libs/metis/metis-5.2.1.ebuild
index a31ce9ab612c..7570cbc9dfce 100644
--- a/sci-libs/metis/metis-5.2.1.ebuild
+++ b/sci-libs/metis/metis-5.2.1.ebuild
@@ -12,7 +12,7 @@ S="${WORKDIR}/METIS-${PV}"
 
 LICENSE="Apache-2.0"
 SLOT="0"
-KEYWORDS="~amd64 ~amd64-linux"
+KEYWORDS="~amd64 ~x86 ~amd64-linux"
 IUSE="double-precision examples int64 openmp"
 
 PATCHES=(
diff --git a/sci-libs/parmetis/Manifest b/sci-libs/parmetis/Manifest
index dab1346a7109..a821adfcbec3 100644
--- a/sci-libs/parmetis/Manifest
+++ b/sci-libs/parmetis/Manifest
@@ -5,5 +5,5 @@ AUX parmetis-4.0.3_p20230326-respect-user-flags.patch 1394 BLAKE2B c688028d35235
 DIST parmetis-4.0.3.tar.gz 5567670 BLAKE2B 69a44ea8e50d8fd78046a342807b994220d03da3ab1695533d92772b1840302917a7d5d6f9eb020d9ff8ab7e5372bff0386d6354b662f58495b74f8f596c45f9 SHA512 454a91921ca35c981df11c9846a11963ff8fd8407a25179453af33f8fe69493f6dd7f2a0b8feed9a7d3f121e45b715749dd7a94873eaac2bae4cad1e535ca132
 DIST parmetis-4.0.3_p20230326.tar.gz 5312266 BLAKE2B 52f34982cff0aa3dbc26dde1bab72ff1a8f5fa20feba72deedc600fcb0d73c9d05f3a43bf5713f9a7db74695affaedd5ea5f691396f5d02c58ad26dc5a779592 SHA512 a71d212a1c8682eb662ef6bb8bdcb124bc13c353e76ac236b01e544bddb975740c36be54c05305e1114e4daf20fec56642ffa319a6426c87c5538ea2225c156b
 EBUILD parmetis-4.0.3-r2.ebuild 1690 BLAKE2B 6aac6160b20b60e2f57f286c5ec1574b77d0ab8330c9ee18c60f97199c99ed779d619787a05eccf9e49c9cbb32e4d8829ef719b505fa6bccff3271729c9e8566 SHA512 27699872f747004b29f5460160a367dee4769e7be3b09bd80cae02c4f20bdee046819088ed9e3466355ab7f678459c878d5f862b19875efe6683e531e8e1707f
-EBUILD parmetis-4.0.3_p20230326.ebuild 1673 BLAKE2B 5132a1ae12aac12aa3560ef9a35e156f05ca7e707abf57b0e454666c875732875c0eab4dbf7551ae24c82edd5967f5e7f1b4164fa67417aefcacbc2540b79315 SHA512 78ee58369b6c13cef92f00099e128c8ff896dd99cee900b87a75d68890540d8972088cdd16adcba4cf261113926d9fca0ea968ce7f721b3c079cfe76f3e1b727
+EBUILD parmetis-4.0.3_p20230326.ebuild 1678 BLAKE2B 9a8abc3be9211f1463f234d067fb594373704f864bd08b1f607186a19e1eaecb8c9d025f716c38d4d9c28099ad19ec291b5988b70da6be38e31faf0761554708 SHA512 d684be6a2f5828e0b740a1f22a013f6cb7285fb3fa02a44834626831f986753c509b27b9e7e5ff4a22ab9e174c8f3f8ebec776074aa898cbb37aa8d3e508513a
 MISC metadata.xml 745 BLAKE2B be3f5f93243ec90f867d88af721f18f6ab0d4ef43faf2739eedbc4a0f1bef6180d17254fbbff1d0c0c6912b21d249ca145037ca17634382dfe6111c875c8e8eb SHA512 c1a78d446d63b6939396f698fa188b7acea2e50615d079e62bcfc17a0d96327dea376f5714fda34bf6223c2b9a8c87f14bfd87ddde0fae28909f8a4e4419e8d4
diff --git a/sci-libs/parmetis/parmetis-4.0.3_p20230326.ebuild b/sci-libs/parmetis/parmetis-4.0.3_p20230326.ebuild
index 32c0dc0c83d8..ab8089bdd3a3 100644
--- a/sci-libs/parmetis/parmetis-4.0.3_p20230326.ebuild
+++ b/sci-libs/parmetis/parmetis-4.0.3_p20230326.ebuild
@@ -14,7 +14,7 @@ S="${WORKDIR}/ParMETIS-${COMMIT}"
 
 LICENSE="all-rights-reserved"
 SLOT="0"
-KEYWORDS="~amd64 ~amd64-linux"
+KEYWORDS="~amd64 ~x86 ~amd64-linux"
 IUSE="examples openmp pcre"
 RESTRICT="mirror bindist"