gentoo resync : 14.12.2020

3 files changed, 203 insertions, 1 deletions

diff --git a/sci-mathematics/octave/Manifest b/sci-mathematics/octave/Manifest
index 520f273a4cac..56cdb241bb37 100644
--- a/sci-mathematics/octave/Manifest
+++ b/sci-mathematics/octave/Manifest
@@ -3,5 +3,7 @@ AUX octave-4.2.2-ncurses-pkgconfig.patch 1034 BLAKE2B 244a96ab7cfd47203e7d23774c
 AUX octave-4.4.0-texi.patch 570 BLAKE2B 83863f20e995eb4512944d6766b09a648b0d00b434f98f25db214ef6b3bcfa504d316dad984e7330ed51d972e5caec69c42797f703595a39d6acab7128270313 SHA512 e2d0390e586e001182a31a840ed6a93b4fb6ce0dd581f64460dcf3947783dd4755a8bd277f4babb6328f04cf653f02ac681952610d7eb70165936a9d79998c3f
 AUX octave-5.1.0-pkgbuilddir.patch 1565 BLAKE2B 7b2968139e080aaa20b5372b400ac84c1754296767834011bcdda5258e7859c48ffaedcade17e8b23e2d23635a546c6a726061e8b4679913ff5b204a26cd0ef4 SHA512 28dcebc3a904cf048cb0568591c6c55616d40f6ca80982a232489a51ec92505dca186043ee3750d8a3f3782149ef1861332a8486466fba2898f0084adf0acb90
 DIST octave-5.2.0.tar.gz 33360285 BLAKE2B 6d53a48a7fbe929e372fd51d084c0269befd3140341f3f3a1f2cae02f9f085ed434c3336c770c9a856081197c93ee306f481dd116b958685175bc294e4db62ae SHA512 fa2076fb22415e0797964c66cfb8d24643f178f45eb9c14ebb4c082767e0a53509fde550f579fa4a816348bd0f7cbc74f24144f9a30a5b9c09ebe1b3949db498
+DIST octave-6.1.0.tar.gz 32592405 BLAKE2B e39d7e8726b1aad8e378c8578e3d019b735ee82aa00230c9c35b36238848aa4c557da11707203c1ff845c26a117852c40ad9a42138812dcb5eba9b77a583a117 SHA512 34abe6fa489aea94bfeb08027653cd83a73611c6032c8b3ddc4b59223f316ee275f74490048a45aebf178858494f6920593565e612f6e77351102494cb9f49f7
 EBUILD octave-5.2.0.ebuild 5465 BLAKE2B 4334c91112a379067fb32b5e0a3ceb78400752711d32c9bcd1c7367f14663d26303f2102890596fbb000b0e9167c2a8d2e63fae9d57d2392991cab4221748dd1 SHA512 afd895fc8d2cad63ad70a637ecc3d68acf2c12627b2f50fe33713ad6286a023e09acdeaa6689477dbe8e58817619bbacc9714fa857d8115daf1366c7b3537cec
-MISC metadata.xml 1046 BLAKE2B 1f3b62ee1553ab0cfd1a176b5e79a49e86341cb379ee7ef95e9d0b6efc0d621c68f0f8fd2cf1ec85a351d14964d5038e373a88a713a3078e782e8e8392a6ee7f SHA512 2debc123655a81c380f212467820e464eb1e2184d542a183e07633d82fa410cc802a2a49f7071df1ae5df1a16e73b867975edb44c9cda94484732cd66454798b
+EBUILD octave-6.1.0-r1.ebuild 5446 BLAKE2B 2553aa591bf9508b5af433faef266fcee808f185a6e59bec92515504fae255c3a0a93109ca9fff7adc6905eb34c3a2f3b17fa6ef09943cb84cfc7eb3283182fe SHA512 754a7ccab42bcc3b59f87798d17a844a100fc139d0457935d8024ea2d925b0d1ae46992cf5f96122191d3b705d2f4128a6cd264ee0103f42f60b584e8c96c563
+MISC metadata.xml 1153 BLAKE2B 66d7908c8b90f850ac9c83075ffde66d32235e43cb6a23ae16aad8227f02733d8db8e37e8d23ebf7fd0af92c1af0de6fe47b65713dda94d6000e43d02e168733 SHA512 0131cf603beefbc01be92a7b2cfdebc7bc8e68419aa8432ac5aaedf1ac18581f3b50b4f98f543585dba4d830ccb394f9e288aaac2e36c763e8ed800775c459a1
diff --git a/sci-mathematics/octave/metadata.xml b/sci-mathematics/octave/metadata.xml
index 619b5f255ad1..7c8e7d9ad55f 100644
--- a/sci-mathematics/octave/metadata.xml
+++ b/sci-mathematics/octave/metadata.xml
@@ -13,5 +13,6 @@
 		<flag name="qhull">Add support for <pkg>media-libs/qhull</pkg>, to allow `delaunay', `convhull', and related functions</flag>
 		<flag name="qrupdate">Add support for <pkg>sci-libs/qrupdate</pkg>for QR and Cholesky update functions</flag>
 		<flag name="sparse">Add enhanced support for sparse matrix algebra with SuiteSparse</flag>
+		<flag name="sundials">Enable the ode15i and ode15s ODE solvers using <pkg>sci-libs/sundials</pkg></flag>
 	</use>
 </pkgmetadata>
diff --git a/sci-mathematics/octave/octave-6.1.0-r1.ebuild b/sci-mathematics/octave/octave-6.1.0-r1.ebuild
new file mode 100644
index 000000000000..291afd256768
--- /dev/null
+++ b/sci-mathematics/octave/octave-6.1.0-r1.ebuild
@@ -0,0 +1,199 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit autotools flag-o-matic fortran-2 gnome2-utils java-pkg-opt-2 pax-utils toolchain-funcs xdg-utils
+
+DESCRIPTION="High-level interactive language for numerical computations"
+LICENSE="GPL-3"
+HOMEPAGE="https://www.gnu.org/software/octave/"
+SRC_URI="mirror://gnu/${PN}/${P}.tar.gz"
+
+SLOT="0/${PV}"
+IUSE="curl doc fftw +glpk gnuplot gui hdf5 java libressl opengl
+	portaudio postscript +qhull +qrupdate readline sndfile +sparse
+	ssl static-libs sundials X zlib"
+KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
+
+# Although it is listed in INSTALL.OCTAVE as a build tool, Octave runs
+# "makeinfo" from sys-apps/texinfo at runtime to convert its texinfo
+# documentation to text (see scripts/help/help.m).
+RDEPEND="
+	app-arch/bzip2
+	app-text/ghostscript-gpl
+	sys-apps/texinfo
+	dev-libs/libpcre:3=
+	sys-libs/ncurses:0=
+	sys-libs/zlib
+	virtual/blas
+	virtual/lapack
+	curl? ( net-misc/curl:0= )
+	fftw? ( sci-libs/fftw:3.0= )
+	glpk? ( sci-mathematics/glpk:0= )
+	gnuplot? ( sci-visualization/gnuplot )
+	gui? (
+		dev-qt/qtcore:5
+		dev-qt/qtgui:5
+		dev-qt/qthelp:5
+		dev-qt/qtnetwork:5
+		dev-qt/qtopengl:5
+		dev-qt/qtprintsupport:5
+		dev-qt/qtwidgets:5
+		x11-libs/qscintilla:=
+	)
+	hdf5? ( sci-libs/hdf5:0= )
+	java? ( >=virtual/jre-1.6.0:* )
+	opengl? (
+		media-libs/freetype:2=
+		media-libs/fontconfig:1.0=
+		virtual/glu
+		>=x11-libs/fltk-1.3:1=[opengl,xft]
+		x11-libs/gl2ps:0=
+	)
+	portaudio? ( media-libs/portaudio )
+	postscript? (
+		app-text/epstool
+		media-gfx/pstoedit
+		media-gfx/transfig
+	)
+	qhull? ( media-libs/qhull:0= )
+	qrupdate? ( sci-libs/qrupdate:0= )
+	readline? ( sys-libs/readline:0= )
+	sndfile? ( media-libs/libsndfile )
+	sparse? (
+		sci-libs/arpack:0=
+		sci-libs/camd:0=
+		sci-libs/ccolamd:0=
+		sci-libs/cholmod:0=
+		sci-libs/colamd:0=
+		sci-libs/cxsparse:0=
+		sci-libs/umfpack:0=
+	)
+	ssl? (
+		 !libressl? ( dev-libs/openssl:0= )
+		 libressl? ( dev-libs/libressl:0= )
+	)
+	sundials? ( >=sci-libs/sundials-4:0= )
+	X? ( x11-libs/libX11:0= )"
+DEPEND="${RDEPEND}
+	dev-util/gperf
+	virtual/pkgconfig
+	doc? (
+		dev-texlive/texlive-fontsrecommended
+		dev-texlive/texlive-plaingeneric
+		dev-texlive/texlive-metapost
+		virtual/latex-base
+	)
+	gui? ( dev-qt/linguist-tools:5 )
+	java? ( >=virtual/jdk-1.6.0 )
+	qrupdate? ( app-misc/pax-utils )
+	sparse? ( app-misc/pax-utils )"
+
+# I'm not sure what the getcwd patch is intended to fix. That macro is
+# part of gnulib, though, so if it's a serious problem then we should
+# consult upstream about it.
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.2.0-disable-getcwd-path-max-test-as-it-is-too-slow.patch
+	"${FILESDIR}"/${PN}-5.1.0-pkgbuilddir.patch
+	"${FILESDIR}"/${PN}-4.2.2-ncurses-pkgconfig.patch
+)
+
+src_prepare() {
+	# nasty prefix hacks for fltk:1 linking
+	if use prefix; then
+		use opengl && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/fltk-1"
+	fi
+
+	# occasional fail on install, force regeneration (bug #401189)
+	rm doc/interpreter/contributors.texi || die
+
+	default
+	eautoreconf
+}
+
+src_configure() {
+	# unfortunate dependency on mpi from hdf5 (bug #302621)
+	use hdf5 && has_version sci-libs/hdf5[mpi] && \
+		export CXX=mpicxx CC=mpicc FC=mpif77 F77=mpif77
+
+	# Some of these use_with flags are a bit mismatched. The configure
+	# script offers only --without-foo, and detects "foo" automatically
+	# unless --without-foo is specified. Passing --with-foo is not an
+	# error, however, so it kind of works. We wind up with, for example,
+	#
+	# --with-sundials_ida (no-op) with USE="sundials"
+	# --without-sundials_ida (disables it) with USE="-sundials"
+	#
+	econf \
+		--localstatedir="${EPREFIX}/var/state/octave" \
+		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+		--with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" \
+		--disable-64 \
+		--disable-jit \
+		--enable-shared \
+		--with-z \
+		--with-bz2 \
+		$(use_enable static-libs static) \
+		$(use_enable doc docs) \
+		$(use_enable java) \
+		$(use_enable readline) \
+		$(use_with curl) \
+		$(use_with fftw fftw3) \
+		$(use_with fftw fftw3f) \
+		$(use_enable fftw fftw-threads) \
+		$(use_with glpk) \
+		$(use_with hdf5) \
+		$(use_with opengl) \
+		$(use_with opengl fltk) \
+		$(use_with ssl openssl) \
+		$(use_with portaudio) \
+		$(use_with qhull) \
+		$(use_with qrupdate) \
+		$(use_with gui qt 5) \
+		$(use_with sndfile) \
+		$(use_with sparse arpack) \
+		$(use_with sparse umfpack) \
+		$(use_with sparse colamd) \
+		$(use_with sparse ccolamd) \
+		$(use_with sparse cholmod) \
+		$(use_with sparse cxsparse) \
+		$(use_with sundials sundials_ida) \
+		$(use_with X x)
+}
+
+src_compile() {
+	export VARTEXFONTS="${T}/fonts" # otherwise it will write to /var/cache/fonts/ and trip sandbox
+	default
+	if use java; then
+		pax-mark m "${S}/src/.libs/octave-cli"
+	fi
+}
+
+src_install() {
+	default
+	if use doc; then
+		dodoc $(find doc -name '*.pdf')
+	else
+		# bug 566134, macros.texi is installed by make install if use doc
+		insinto /usr/share/${PN}/${PV}/etc
+		doins doc/interpreter/macros.texi
+	fi
+	[[ -e test/fntests.log ]] && dodoc test/fntests.log
+	use java && \
+		java-pkg_regjar "${ED%/}/usr/share/${PN}/${PV}/m/java/octave.jar"
+	echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/${PV}" > 99octave || die
+	doenvd 99octave
+}
+
+pkg_postinst() {
+	gnome2_icon_cache_update
+	xdg_mimeinfo_database_update
+	xdg_desktop_database_update
+}
+
+pkg_postrm() {
+	gnome2_icon_cache_update
+	xdg_mimeinfo_database_update
+	xdg_desktop_database_update
+}