gentoo resync : 15.01.2020

8 files changed, 523 insertions, 17 deletions

diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest
index c8d7b950219c..f66dd4c384bb 100644
--- a/sci-mathematics/rstudio/Manifest
+++ b/sci-mathematics/rstudio/Manifest
@@ -3,7 +3,7 @@ AUX rstudio-0.98.490-linker_flags.patch 806 BLAKE2B dc32a4a3bbe7ed2467c187aab7a1
 AUX rstudio-0.99.473-qtsingleapplication.patch 1889 BLAKE2B 1346ed138abd08318f23cbe4b34a0d2ee4ac0cf83206eba04c238c08c659859c11e207e3e6d03ad23e5baf6353a5f8ad49fbdffcea31104dc810fbb05f4ec9c3 SHA512 07af71ac080c0a2d4c2c62ec8f0ac451e6100a94e5360fafd274c62e2205d60d0c4b7fe18ed4536e515fa4a51a4ab819e47c529ce4fcbf93532dbb57e123fb37
 AUX rstudio-0.99.879-prefs.patch 1859 BLAKE2B f324ab7b87e7cef32ac8b2718059200e4040d82258ba6d47bf41527ba413627b5a0971924ce3e1bfa1337d206838cb9f1ade11a1fe35786fe2371b0cb86a4c11 SHA512 987d46d7dd8955ae55f29aa2ca51241697405d8219b719342a5e8b6621dcec8bffa5b41d09a82e03d65c6b9797fb6aea8791ea161f4406600a5d5bd20aaf00f8
 AUX rstudio-1.0.44-paths.patch 6722 BLAKE2B 46351eb6eda15f74b03f1c5beb0b22bb835f4312af1889997e042657383a0130986bf4ecbc45dac98aafed7c317048e8bb380287a79be696c5c0a403e5633857 SHA512 6191520733f33466cf45bcc102a386763acc37a0cc1c58718cb59f3e3b5549afe5a051039f50aa390d773433d992cdff11bdf27c7e2960eb6177cd99c3169828
-AUX rstudio-1.0.44-systemd.patch 1147 BLAKE2B ca1b24c2544ff2cb6b9e7a91b4ce25eda7f034a6bff91c2495a993e8ab69062a839f85f4ecb2604bbada7df40e67ab5476fdf05c5ebf48d1518dd7f1b950aae7 SHA512 ee22d4421ab52cff1815200ce1bda33ba7af752363537c6875ea19151767722183861301082eb03cb34403a08981cb10d66fd496e9e2687a4f3ca9de98f33d91
+AUX rstudio-1.0.44-systemd.patch 1060 BLAKE2B c5417748653b60c85cacfaab08f2baf6936c3c2d76fe0c23702fe006c4f13de9d17a3556c05c0f47be41c6f4629d92da265861b1c689415bbdd59a515d1848af SHA512 3559fc0cb229b50fbfd4361e5be982396d563e41475878f15f870609caa9f85bd50b32f90b8f8d9c432287cb7286920dca21279bc5bfb33f1fd95a0ce68a2c4e
 AUX rstudio-1.1.357-clang-pandoc.patch 3240 BLAKE2B bc7f55d2f2cea64643d02af314afbbd0df1d986889d0d3a2bbf6878e9f8ec7d73710c7e631bf0cbf04b4ecf4142236ef7a1dc0a073d34958a8bd0828594f605d SHA512 3a2fc154f934b4bbd92df6359dc26c27bf2f4f06b2dde572faba3c083879c8e0e98ed776701282d9f3a5cb3f4ac2416e04e6a30beedf4ffa5cbeca3a7e72421b
 AUX rstudio-1.1.453-boost-1.67.0.patch 1920 BLAKE2B d360259929a73ca6ed7b59997e34dfb2f40992ad6a25372fa2465d07c6df93838d62f5c9dd54b3b45850056bdcba24d20f84eda9480103e71feeac0b20df0a1b SHA512 250c16695c42b03d59ed690de8fc38494ac52047f5fe88b82df431082d524a396266c2b7e8c6afbf3b25e08102d99ef37b3892d62e7bc134f872718880660709
 AUX rstudio-1.1.453-core.patch 5843 BLAKE2B 9634a1d619c7e32e672d64ce90c092a9451499ffb27104a5228b4665abeffe7618f92ac04c29b6a3278c2702fe1361be43ba9eb1616acef71c42d39c68df9e65 SHA512 64e50dc812fb60ce6d8b17c6ea0eb6cfa055faa3a235d12e84ecb2691fcc90ef457d4eddc6e8029145fc3e919336fb0c91c293767c2d2f27bd542508c1e458aa
@@ -14,6 +14,7 @@ AUX rstudio-1.1.463-boost-1.70.0.patch 1765 BLAKE2B 43520b4ef0c20ce33cb336d5b7fd
 AUX rstudio-1.1.463-fix-ptr-int-compare.patch 595 BLAKE2B 10b7320990869c07c02e8a8cd06d41f67d0ddcbb7351fbbd2b9044144733b0b68225bc53c2aa93a98ea6715031d31346209700fbcbcb4c48809d9e3537cce435 SHA512 27fc52d4ff2a96212863eefabf3d69f4d18db259da4e366a0020c2deb4126d03208c9bf3c4877f75ccadaf5cc59da070a07380968d44942622525b1f33db90e3
 AUX rstudio-1.2.1335-boost-1.70.0_p1.patch 1771 BLAKE2B eaa29ff256b8ee79c0384075745c53999d2d4ace494c0403cfa805868638921b6b0aa48631c8399bd8f21a4ee5734c6e0f46d2abf5f5111466613fbf7eca73bc SHA512 01a105c269147e256a3a0d2f803809d215c492c22626bf8b7bd5d9b6465db584b8aaa48299a6cc4f7081dd537ffcdedae1e2c328fe9bae0e1dca844f13402586
 AUX rstudio-1.2.1335-boost-1.70.0_p2.patch 1081 BLAKE2B 19e78cfa2620335cdc2f058b84eba48f693d2cd3268813fb226641727c0f622bbe452d29bdd2be85518aaf4268306cd5e985ec5778e08f21bd802bfd5ef2eb2e SHA512 20c57a4eec8e8b333c718578caad1aca525df94090c7528f996077aab4a1a59d77a03e01d8ed2d3a77d444bebcd9744815fc168d2c3263b2f0b7646c5ebc37c0
+AUX rstudio-1.2.1335-boost-1.72-filesystem.patch 1057 BLAKE2B d375ad438e66f36d5cd0cb70572d164f54407acd6823f8c76571b40cce313a7f79afa63e44e92efc9a764bd660ace471f8332a9032c9f7b14fbd2e8b4dd325a9 SHA512 83b70516cc16564c175a6ceb810b27b2e89cea37c6f1f789871d2d115ce1705246edab06395bf6fce7951a5593017fae015571304f6ef36deb9efc13f1c388a7
 AUX rstudio-1.2.1335-core.patch 6336 BLAKE2B 00abd96a9d653fc6c557e9e3bd82227ead2edef5a49ae67ee0ee4ec97b5a80665c999f478516710c437a0148b9e3b372164aa5e4c50813db41de0eb667bdbd41 SHA512 7cda17801efd5afe91d9064c7c24bd285ee1c2bc2df3f2631fe68261194394adb217345be529b5a6880a93a99dd6f4f32a92d449ace30c31f6d85cbf79f039fa
 AUX rstudio-1.2.1335-fix-ptr-int-compare.patch 595 BLAKE2B 8db7be4c0be67670d60a8f096faa58b13a6dc87194d0997cf97768d8fd67e2c74b84c4de2a8f4502bbd9cf262293b8fe18f4d05428394dcc70ebc8962a969923 SHA512 2f083f036f3594af206fd71db5b761ae6a536e99e4b51264234a7d8169db252b0494da19d5e9d319817a84f6002f64ccb388bc6e0a42bf439c1365618da5626f
 AUX rstudio-1.2.1335-linker_flags.patch 505 BLAKE2B ac0ebca22f6dfcb799dd151e3c915c387dade30f86a9d335513d75c7c726c362255c745e91949ef3c1f58695d7a76a53550837c9d550113ba81d3d2d36507459 SHA512 221471a6ad720517a0b62563779ee11190f14b2f2f6d39e9e1c0acb32a03e41b9db5bd639c5336a26936d8f71ab5d88274471b00d224c6e31f2662680d6fd71c
@@ -21,6 +22,9 @@ AUX rstudio-1.2.1335-pandoc.patch 1392 BLAKE2B 55829768d2c05c5bb3ee13da383a5f9f0
 AUX rstudio-1.2.1335-paths.patch 6105 BLAKE2B 249118b4ecdaa00ad7192079f3d4cc38b623fcf82e4c1df688abefcc5d0cb17561fd5f873ef57a7338fda9b792224b7a166186ad13c84e18d975a4a21d7696a5 SHA512 7af93bc2e375a8070d22e3e923fd43135e5dc8d1875a6a206b14b92a07a20ed541cc6258cb92ce18e562d7247abb60e6e7e9d3fa680b6b9e8b9c34e8d93e4b1d
 AUX rstudio-1.2.1335-prefs.patch 2221 BLAKE2B 659738473f343ed1632221d33770d6caf59c1dc2cce6ff8e15e6742e3603edabd1ebb7f2e809837855a4dbd6792ef41668adb423a2a0a7ddbe378306fadaee20 SHA512 ba2b8f9186c97f17d265e475ee7e1444a4b9796675da2ac0148bef791aca4dda9a6b597c83c580837bbb55c53ea3f61871cba6b5bc60395c6a59e2778da3432f
 AUX rstudio-1.2.1335-qtsingleapplication.patch 2080 BLAKE2B 3e2c1b5df1c030a0d3f9adb01ad469a7e4032248eca156644aa74fdbf1a4584fd92185c9f3e38cb8ee8afdfd556f40642995702719b4d69fe9342f9e4de85dda SHA512 6b03194d47c7f7a39b13ccf93d02bb154e85b5d46777fbf5306e94da13f22fc83bf91bd923a58dfc9bceda517cda81673deb0f0a7b087d501b82a961174bc9cc
+AUX rstudio-1.2.5033-pandoc.patch 1442 BLAKE2B 28a1070057624fb70a2df6de0312dfa827a075ae481f6433733cdc6136a429fe67c72262d3106c6b00f7411f93d3e33ca69f232cc87aa9d8e50e11cad89d2dd6 SHA512 cdbb97f0705f6b56ce8e285d066c57a9f73ce87ef58d8101362a508cb1cc52a32418a742e84a9a9d6476b253984abe0759b45e824d360d8b550e53a98d2d05ca
+AUX rstudio-1.2.5033-paths.patch 6055 BLAKE2B 1c389cbd2980031080955c104e614d2bbcd0d747fd7d925a9650685bf30ddb84c34b66a4a6bcb58a1b18167e51804df9c22734460255eda866365231cda3e9f9 SHA512 ba213cf13ae15df043215e6b87bf554c9daba4124a1a83ecb2e5ccc8f26fd6f1467798901cc24451f04f4d25482da401cc9cdd5071a4c6ac28d9af37c45f51e5
+AUX rstudio-1.2.5033-prefs.patch 3684 BLAKE2B dfa5f7289a7e752704b6481dd6e02f8e88a91aaa36b25c91e8154f17bf3fbfcb2b674fcc790a82ae14deb0718b1d001f4931de6d6ccb99d1ed4dc9c8e71d6149 SHA512 86436aec19da35d99ec64ad1d4c243efad85a277ee72c2eaf94627c49389ba8d4bc626177a9d599bb95d00bc3e66210472e11a5ff38ed74a7a353a719f64fe4d
 AUX rstudio-server.conf 1337 BLAKE2B a9a85c76a1c7c5f32f55606c6e3c9b72662dbd25e4b005f9702ed301afc21425906faf06fca91c18328524c53437aee7c9c4aee26cf293cdc72375e91ec7f701 SHA512 f166f1aa4bd370fcfcb44c5694d4e6af8bc64c5f43671e0c1def10c555d248bebf54199097f37d628a083c65913f522b7b44c3bd6a1227c011cf25eed1dba4a6
 AUX rstudio-server.initd 377 BLAKE2B 4f49b9ae2a81cd60565f79f121d60f5531746febd1f6f68cc93863985bd9af28d4ef04f647bd1b492ca69273724c282bcaedcfb5d08b8f2ac237ddb6f5baa438 SHA512 828a485338088d129c57debec6557ad35db5b042c61489ae4341717ce2218bec59a873541c270f964bb9c708b75896f1a3e2e64a4245a1713979d3bd42c9d5c8
 AUX rstudio-server.service.in 161 BLAKE2B 0be9cb83304063c9123c6fa13b7751b2f848adde282fc586acccfa4110f902e4de9962211ca0c871f66f3563319fe195c9f230daa4d4e429357ff74701e4d2d7 SHA512 bcf1f30e460dd5f0562b20489ca5544c6bcfbfb0ee1c636c4365df433e97e02e9e3b233e4159a0c71ad6d319f34f93c22b8fbf6b36463e29f22df2acd71da173
@@ -35,9 +39,11 @@ DIST rmarkdown-0.98.1000.tar.gz 1423820 BLAKE2B eac8c9cf438c9b44ddfe954602dd67a8
 DIST rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz 197051 BLAKE2B 1f3f9fe71d7b50ab5108dfdbd3cc0b882bcc935ee58e8a9145b07a18bb86c39bc45e321a13add24df99492bc30548df716775c339bcbf4efc2bfe158299ae55a SHA512 208dc349f4aa7613ecf94939aba60d22d3a06972344b526c9b6c951015571f5922927bca08db571a7b8a268e42609a4f558f01278c9685f6da2ffc66a1f95ade
 DIST rstudio-1.1.463.tar.gz 20203779 BLAKE2B 97f879539cbb7051af362a8469795a47feb42d18ff46dbbdffe36e0685d1cd5704848b3bf5a5611d482a09567722e35288527302cd521b18e2a48b347c919e17 SHA512 987347563a9726363c28d866e1372eae8eb19a5cbd0e33c7ee0e0c8f90471c4b69de0f559c00410523841b6c090b584652e01496f5db33c015a4554d2f4e179b
 DIST rstudio-1.2.1335.tar.gz 20440199 BLAKE2B cdd54a7df5a234bcc6d440f4ba5b45e58ea469f8dac5a17d9088f9d65035495c86b5a308cde28a224648f96a74038299863291f3c516a1d567762ecc5bfb079c SHA512 90657effc55264bf3efa1a8a5d2bbe94a37727f0450202ade99b9fbb71ea75b6dd9fa798d17cd4d1a1a97a16f186de8004d1888b6ea43f36d5252508520d3cde
+DIST rstudio-1.2.5033.tar.gz 20456976 BLAKE2B 3cbca6a5180690104dddf1456168bd38708d4152ed9b7a167035dd66e270aeb6405169d34461cbd899738be1872607e3f3b6f81ff0b3c9e6a9ed965a889b1393 SHA512 3569d4fed342275a9905c87e4f97be63b6391d2c37f75397e06201a7c31f80d94799214f51ff8e57d458ef18d5e54afe1ec8a7c56ac05ed8b8225ecca72d1daf
 DIST selenium-java-2.37.0.zip 24625928 BLAKE2B b369a805ae96f0d0913c4be42888d9c2a1e213ff982f9daefe73fadb705baa80ab0186ab50ed52609e83697cffaf8d617d06d75405cb8e1c3fe8e7c5b81dba25 SHA512 68624e82dbc751a25c50fad72702a98eb30d77fd4337d2a969f8e06bcc49e5f8c835cd27ec53772f3375014ddde1d5636936e966b75f3594a9f86aa18ba4e779
 DIST selenium-server-standalone-2.37.0.jar 34730734 BLAKE2B 3899b1d4c5f9153c1f9f13bec66f7c1456ea2e0f34db7d8e54a1ce9063c33a05b3cf95216c2ae06bb40504f72f343a4b9ba6c8553fbbc340e7c18a5b612dde5c SHA512 b215446d42d2d1f69664349b6ae6dc53a532d3624c91254f0f4183d0ad764648792e5cc1126a55a1e60d9687d55200fed01d6d2f46cc3d853b1fa6ee38111018
 DIST shinyapps-0.98.1000.tar.gz 910095 BLAKE2B 4f9364692348bb52cbd12cc6ee447841cb0c805327f2518b2a9545920b602b954a98dea68ccb3daf32d2c3bab6464fb15402844d93277193315f1ae7b3ca5190 SHA512 3162317c4c20cfc1497e952a8235867084d629ae88407e6c465b3e208adb1dc97abfe6b9922e0374ddf4c8e38a76e112942bd312c54a66f74e6f2a3fe4c0a07c
 EBUILD rstudio-1.1.463-r1.ebuild 8679 BLAKE2B 2341733acb0bad21b48da77842bfff75f9b18860ec039282662609b312788d8d1dfd8ce7dd5b13ede6030167eb399554a68dced9dcbce4aa6c7e31f758cf9c30 SHA512 5003e147cf81e9e65aba48c8143623e3d0f5f2e1ae75fe8ac6300261962c93ba2132b2a41c961ae6cbaf5fb0e1ae5262e27702e3d2c6bd6d6cfd52f54a329ea7
-EBUILD rstudio-1.2.1335.ebuild 8630 BLAKE2B 5fb25a1c374b336a44ad91652fda367abeec3f5e9da0eb682eb2224ea81a0ac24bc8d801f0e0733118cb1f872d61507951778c3c16d7b1ea74abade932a0e542 SHA512 3f409a721d2f20e4c558bd6b2b40e6c06293162a5c92f06509cef13e356f2279554807a755bfd28cff0ab11b170f3fb53aa88b10a3984e92f9a2d8b9d0655ac9
+EBUILD rstudio-1.2.1335.ebuild 8688 BLAKE2B b02dac6ce848799534e95fa016d481526bf09525c84834f604dc6cbfe625e2b4d278fc4554119be6edfd27ad987c4cb9cfa48f56f0c5d165450ea8bfa2a7f276 SHA512 fd846f875b2a9c3e9e992371b8cd11ebe95f27e7b3252181fad50ce3a7ae3bd77b652742e0f4fb6f163cfd903d90dd4e701a29427509ca07615717c5e3d69912
+EBUILD rstudio-1.2.5033.ebuild 7183 BLAKE2B 38c0baa94c4c002dff6b5faf9ce7737832b74fc9de68d9077cc4e1f1a281a456023810a439d8a0b527d3e0ec6cd5860bac544bb30ab57d7077d22ffdb79fb875 SHA512 eb8460899577ddb1ac3925d42737fb8737798cd1b15f7c731283a4fc5b7e413101233325d15b56355d37aab1a27ef87266582c35771f04ab71e4f6714611cdd2
 MISC metadata.xml 590 BLAKE2B 53dc62775e118c9c26ee05e20ee1da1ac31b6a6b74cf7dac410856fe4e0cce40fbb800c7a03e60f59e14442baf3aad866ad42616ad5fbb5724f7f6d8c1636eea SHA512 7111442aaa52da1e554c34f824113ec0e227798dd11b0ea9148b81e7a31c08b2a527b9995e3adb9363c7a4f2a8594f30cbd4a179545bf31d69f07d5558c20f52
diff --git a/sci-mathematics/rstudio/files/rstudio-1.0.44-systemd.patch b/sci-mathematics/rstudio/files/rstudio-1.0.44-systemd.patch
index 7eafd4386abd..56601de5341c 100644
--- a/sci-mathematics/rstudio/files/rstudio-1.0.44-systemd.patch
+++ b/sci-mathematics/rstudio/files/rstudio-1.0.44-systemd.patch
@@ -1,7 +1,7 @@
---- rstudio-1.0.44-orig/src/cpp/server/CMakeLists.txt	2016-10-19 08:32:41.000000000 +1100
-+++ rstudio-1.0.44/src/cpp/server/CMakeLists.txt	2016-12-02 11:11:45.259050839 +1100
-@@ -203,17 +203,12 @@
-            DESTINATION ${RSERVER_UPSTART_DIR})
+--- a/src/cpp/server/CMakeLists.txt
++++ b/src/cpp/server/CMakeLists.txt
+@@ -232,17 +232,12 @@
+            DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
  
      # install configured systemd profile
 -   set(RSERVER_SYSTEMD_DIR "extras/systemd")
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch
new file mode 100644
index 000000000000..b2c4d2392f6a
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch
@@ -0,0 +1,31 @@
+From a11d0454e5fe9c50005a03b9d9de84355df5c7fd Mon Sep 17 00:00:00 2001
+From: Kevin Ushey <kevinushey@gmail.com>
+Date: Fri, 15 Nov 2019 14:54:02 -0800
+Subject: [PATCH] avoid use of deprecated APIs
+
+---
+ src/cpp/core/FilePath.cpp | 4 +---
+ 1 file changed, 1 insertion(+), 3 deletions(-)
+
+diff --git a/src/cpp/shared_core/FilePath.cpp b/src/cpp/shared_core/FilePath.cpp
+index 088366a9d6..495289e7fc 100644
+--- a/src/cpp/core/FilePath.cpp
++++ b/src/cpp/core/FilePath.cpp
+@@ -22,8 +22,6 @@
+ #include <windows.h>
+ #endif
+ 
+-#define BOOST_FILESYSTEM_NO_DEPRECATED
+-
+ #define BOOST_NO_CXX11_SCOPED_ENUMS
+ #include <boost/filesystem.hpp>
+ #undef BOOST_NO_CXX11_SCOPED_ENUMS
+@@ -1032,7 +1030,7 @@
+       {
+          // NOTE: The path gets round-tripped through toString/fromString, would
+          //   be nice to have a direct constructor
+-         if (!iterationFunction(itr.level(),
++         if (!iterationFunction(itr.depth(),
+                                 FilePath(BOOST_FS_PATH2STR(itr->path()))))
+          {
+             // end the iteration if requested
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.5033-pandoc.patch b/sci-mathematics/rstudio/files/rstudio-1.2.5033-pandoc.patch
new file mode 100644
index 000000000000..b4f611063e17
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.5033-pandoc.patch
@@ -0,0 +1,32 @@
+--- rstudio-1.2.5033-orig/src/cpp/session/CMakeLists.txt	2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/cpp/session/CMakeLists.txt	2020-01-07 12:29:20.174304185 +1100
+@@ -25,9 +25,6 @@
+ if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-26")
+   message(FATAL_ERROR "Mathjax 2.6 not found (re-run install-dependencies script to install)")
+ endif()
+-if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc")
+-  message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)")
+-endif()
+ 
+ # we often install embedded versions of these packages but don't do so currently
+ 
+@@ -490,19 +487,6 @@
+    install(DIRECTORY "resources/connections"
+            DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources)
+ 
+-   # install pandoc
+-   if(WIN32)
+-      set(PANDOC_VERSION "2.7.2" CACHE INTERNAL "Pandoc version")
+-   else()
+-      set(PANDOC_VERSION "2.3.1" CACHE INTERNAL "Pandoc version")
+-   endif()
+-
+-   set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/${PANDOC_VERSION}")
+-   file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*")
+-   install(FILES ${PANDOC_FILES}
+-           PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+-           DESTINATION  ${RSTUDIO_INSTALL_BIN}/pandoc)
+-
+    # install rmarkdown package
+    # file(GLOB RMARKDOWN_PACKAGE "${RSTUDIO_DEPENDENCIES_DIR}/common/rmarkdown*.tar.gz")
+    # install(FILES ${RMARKDOWN_PACKAGE}
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.5033-paths.patch b/sci-mathematics/rstudio/files/rstudio-1.2.5033-paths.patch
new file mode 100644
index 000000000000..aa6a9b23fdec
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.5033-paths.patch
@@ -0,0 +1,118 @@
+--- rstudio-1.2.5033-orig/CMakeGlobals.txt	2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/CMakeGlobals.txt	2020-01-07 12:20:19.115307754 +1100
+@@ -175,7 +175,7 @@
+    else()
+      set(RSTUDIO_INSTALL_BIN bin)
+    endif()
+-   set(RSTUDIO_INSTALL_SUPPORTING .)
++   set(RSTUDIO_INSTALL_SUPPORTING ${DISTRO_SHARE})
+ endif()
+ 
+ # if the install prefix is /usr/local then tweak as appropriate
+--- rstudio-1.2.5033-orig/src/cpp/server/CMakeLists.txt	2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/cpp/server/CMakeLists.txt	2020-01-07 12:17:32.736309024 +1100
+@@ -194,7 +194,7 @@
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT})
+    install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}
+-           DESTINATION ${RSERVER_INITD_DEBIAN_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_DEBIAN_DIR})
+ 
+    # install configured redhat init.d script
+    set(RSERVER_INITD_REDHAT_DIR "extras/init.d/redhat")
+@@ -202,7 +202,7 @@
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT})
+    install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}
+-           DESTINATION ${RSERVER_INITD_REDHAT_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_REDHAT_DIR})
+ 
+    # install configured suse init.d script
+    set(RSERVER_INITD_SUSE_DIR "extras/init.d/suse")
+@@ -210,13 +210,13 @@
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_SUSE_SCRIPT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT})
+    install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT}
+-           DESTINATION ${RSERVER_INITD_SUSE_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_SUSE_DIR})
+ 
+    # install pam profile
+    set(RSERVER_PAM_DIR "extras/pam")
+    set(RSERVER_PAM_PROFILE "${RSERVER_PAM_DIR}/rstudio")
+    install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_PAM_PROFILE}
+-           DESTINATION ${RSERVER_PAM_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_PAM_DIR})
+ 
+    # install configured upstart profile
+    set(RSERVER_UPSTART_DIR "extras/upstart")
+@@ -224,12 +224,12 @@
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE})
+    install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE}
+-           DESTINATION ${RSERVER_UPSTART_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+    set(RSERVER_UPSTART_PROFILE_REDHAT "${RSERVER_UPSTART_DIR}/rstudio-server.redhat.conf")
+    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}.in
+                   ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT})
+    install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}
+-           DESTINATION ${RSERVER_UPSTART_DIR})
++           DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR})
+ 
+     # install configured systemd profile
+    set(RSERVER_SYSTEMD_DIR "extras/systemd")
+--- rstudio-1.2.5033-orig/src/cpp/server/ServerOptions.cpp	2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/cpp/server/ServerOptions.cpp	2020-01-07 12:17:32.773309023 +1100
+@@ -389,8 +389,8 @@
+ 
+    // convert relative paths by completing from the system installation
+    // path (this allows us to be relocatable)
+-   resolvePath(resourcePath, &wwwLocalPath_);
+-   resolvePath(resourcePath, &wwwSymbolMapsPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_);
++   resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
+    resolvePath(binaryPath, &authPamHelperPath_);
+    resolvePath(binaryPath, &rsessionPath_);
+    resolvePath(binaryPath, &rldpathPath_);
+--- rstudio-1.2.5033-orig/src/cpp/session/SessionOptions.cpp	2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/cpp/session/SessionOptions.cpp	2020-01-07 12:17:32.774309023 +1100
+@@ -53,7 +53,7 @@
+ namespace session {  
+ 
+ namespace {
+-const char* const kDefaultPandocPath = "bin/pandoc";
++const char* const kDefaultPandocPath = "bin";
+ const char* const kDefaultPostbackPath = "bin/postback/rpostback";
+ const char* const kDefaultRsclangPath = "bin/rsclang";
+ 
+@@ -571,14 +571,14 @@
+    }
+    
+    // convert relative paths by completing from the app resource path
+-   resolvePath(resourcePath_, &rResourcesPath_);
+-   resolvePath(resourcePath_, &agreementFilePath_);
+-   resolvePath(resourcePath_, &wwwLocalPath_);
+-   resolvePath(resourcePath_, &wwwSymbolMapsPath_);
+-   resolvePath(resourcePath_, &coreRSourcePath_);
+-   resolvePath(resourcePath_, &modulesRSourcePath_);
+-   resolvePath(resourcePath_, &sessionLibraryPath_);
+-   resolvePath(resourcePath_, &sessionPackageArchivesPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &rResourcesPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &agreementFilePath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwLocalPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &coreRSourcePath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &modulesRSourcePath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionLibraryPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionPackageArchivesPath_);
+    resolvePostbackPath(resourcePath_, &rpostbackPath_);
+ #ifdef _WIN32
+    resolvePath(resourcePath_, &consoleIoPath_);
+@@ -611,7 +611,7 @@
+    }
+    winptyPath_ = pty.complete(completion).absolutePath();
+ #endif // _WIN32
+-   resolvePath(resourcePath_, &hunspellDictionariesPath_);
++   resolvePath(resourcePath_.childPath(DISTRO_SHARE), &hunspellDictionariesPath_);
+    resolvePath(resourcePath_, &mathjaxPath_);
+    resolvePath(resourcePath_, &libclangHeadersPath_);
+    resolvePandocPath(resourcePath_, &pandocPath_);
diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.5033-prefs.patch b/sci-mathematics/rstudio/files/rstudio-1.2.5033-prefs.patch
new file mode 100644
index 000000000000..034eba37a8b9
--- /dev/null
+++ b/sci-mathematics/rstudio/files/rstudio-1.2.5033-prefs.patch
@@ -0,0 +1,83 @@
+--- rstudio-1.2.5033-orig/src/gwt/build.xml	2019-12-04 17:22:17.000000000 +1100
++++ rstudio-1.2.5033/src/gwt/build.xml	2020-01-10 18:35:29.913030923 +1100
+@@ -28,17 +28,35 @@
+             classname="com.google.javascript.jscomp.ant.CompileTask"
+             classpath="${tools.dir}/compiler/compiler.jar"/>
+ 
++   <!-- Configure path to aopalliance -->
++   <property name="aopalliance.sdk" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/aopalliance-1/lib"/>
++
++   <!-- Configure path to javax-inject -->
++   <property name="javax.inject" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/javax-inject/lib"/>
++
++   <!-- Configure path to validation-api -->
++   <property name="validation.api" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/validation-api-1.0/lib"/>
++   <property name="validation.api.sources" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/validation-api-1.0/sources"/>
++
+    <!-- Configure path to GWT SDK -->
+-   <property name="gwt.sdk" value="${lib.dir}/gwt/2.8.1"/>
++   <property name="gwt.sdk" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/gwt-2.8/lib"/>
++
++   <!-- Configure path to Google Gin -->
++   <property name="gin.sdk" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/gin-2.1/lib"/>
+ 
+    <property name="gwt.extra.args" value=""/>
+    <property name="gwt.main.module" value="org.rstudio.studio.RStudio"/>
+    <property name="ace.bin" value="${src.dir}/org/rstudio/studio/client/workbench/views/source/editors/text/ace"/>
++   <property environment="env"/>
+ 
+    <path id="project.class.path">
+      <pathelement location="${build.dir}"/>
++      <fileset dir="${aopalliance.sdk}" includes="*.jar"/>
++      <fileset dir="${javax.inject}" includes="*.jar"/>
++      <fileset dir="${validation.api}" includes="*.jar"/>
++      <fileset dir="${validation.api.sources}" includes="*.zip"/>
+       <fileset dir="${gwt.sdk}" includes="*.jar"/>
+-      <fileset dir="${lib.dir}/gin/2.1.2" includes="*.jar"/>
++      <fileset dir="${gin.sdk}" includes="*.jar"/>
+    </path>
+ 
+    <path id="test.class.path">
+@@ -112,8 +130,10 @@
+             <pathelement location="${src.dir}"/>
+             <path refid="project.class.path"/>
+          </classpath>
++         <jvmarg value="-Duser.home=${env.T}"/>
+          <!-- add jvmarg -Xss16M or similar if you see a StackOverflowError -->
+          <jvmarg value="-Xmx1536M"/>
++         <jvmarg value="-Djava.util.prefs.userRoot=${env.T}"/>
+          <arg value="-war"/>
+          <arg value="${www.dir}"/>
+          <arg value="-localWorkers"/>
+@@ -154,6 +174,7 @@
+             <pathelement location="${src.dir}"/>
+             <path refid="project.class.path"/>
+          </classpath>
++         <jvmarg value="-Duser.home=${env.T}"/>
+          <jvmarg value="-Xmx2048M"/>
+          <arg value="-style"/>
+          <arg value="PRETTY"/>
+@@ -176,6 +197,7 @@
+             <pathelement location="src"/>
+             <path refid="project.class.path"/>
+          </classpath>
++         <jvmarg value="-Duser.home=${env.T}"/>
+          <jvmarg value="-Xmx2048M"/>
+          <arg value="-style"/>
+          <arg value="PRETTY"/>
+@@ -202,6 +224,7 @@
+             <pathelement location="src"/>
+             <path refid="project.class.path"/>
+          </classpath>
++         <jvmarg value="-Duser.home=${env.T}"/>
+          <jvmarg value="-Xmx2048M"/>
+       	<arg value="-src"/>
+       	<arg value = "src"/>
+@@ -237,6 +260,7 @@
+             <pathelement location="${test.dir}"/>
+             <pathelement location="${src.dir}"/>
+         </classpath>
++        <jvmarg value="-Duser.home=${env.T}"/>
+         <classpath refid="project.class.path"/>
+         <classpath refid="unittest.class.path"/>
+         <arg value="org.rstudio.studio.client.RStudioUnitTestSuite"/>
diff --git a/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild b/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
index 9d0dfd64d7d1..2ba27bd51487 100644
--- a/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
+++ b/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils
+inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils vcs-clean
 
 # TODO
 # * package gin and gwt
@@ -92,16 +92,17 @@ DEPEND="${RDEPEND}
 #	test? ( dev-java/junit:4 )
 
 PATCHES=(
-		"${FILESDIR}/${PN}-1.2.1335-prefs.patch"
-		"${FILESDIR}/${PN}-1.2.1335-paths.patch"
-		"${FILESDIR}/${PN}-1.2.1335-pandoc.patch"
-		"${FILESDIR}/${PN}-1.2.1335-linker_flags.patch"
-		"${FILESDIR}/${PN}-1.2.1335-qtsingleapplication.patch"
-		"${FILESDIR}/${PN}-1.0.44-systemd.patch"
-		"${FILESDIR}/${PN}-1.2.1335-core.patch"
-		"${FILESDIR}/${PN}-1.2.1335-fix-ptr-int-compare.patch"
-		"${FILESDIR}/${PN}-1.2.1335-boost-1.70.0_p1.patch"
-		"${FILESDIR}/${PN}-1.2.1335-boost-1.70.0_p2.patch"
+	"${FILESDIR}"/${PN}-1.2.1335-prefs.patch
+	"${FILESDIR}"/${PN}-1.2.1335-paths.patch
+	"${FILESDIR}"/${PN}-1.2.1335-pandoc.patch
+	"${FILESDIR}"/${PN}-1.2.1335-linker_flags.patch
+	"${FILESDIR}"/${PN}-1.2.1335-qtsingleapplication.patch
+	"${FILESDIR}"/${PN}-1.0.44-systemd.patch
+	"${FILESDIR}"/${PN}-1.2.1335-core.patch
+	"${FILESDIR}"/${PN}-1.2.1335-fix-ptr-int-compare.patch
+	"${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch
+	"${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch
+	"${FILESDIR}"/${PN}-1.2.1335-boost-1.72-filesystem.patch
 )
 
 src_unpack() {
diff --git a/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild b/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild
new file mode 100644
index 000000000000..88b8f9d905b8
--- /dev/null
+++ b/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild
@@ -0,0 +1,235 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils cmake-utils pam xdg-utils java-pkg-2 java-ant-2 pax-utils prefix qmake-utils vcs-clean
+
+# TODO
+# * use dict from tree, linguas
+# * do src_test (use junit from tree?)
+
+# update from scripts in dependencies/common
+# egrep '(GWT_SDK_VER=|GIN_VER=)' dependencies/common/install-gwt
+GWT_VER=2.8.1
+GIN_VER=2.1.2
+# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc
+# It should be PANDOC_VER=2.3.1 however >=app-text/pandoc-2.3.1 is not yet in portage
+PANDOC_VER=1.19.2.1
+# grep -5 QT_CANDIDATES src/cpp/desktop/CMakeLists.txt
+QT_VER=5.10
+QT_SLOT=5
+
+DESCRIPTION="IDE for the R language"
+HOMEPAGE="
+	http://www.rstudio.org
+	https://github.com/rstudio/rstudio/"
+SRC_URI="
+	https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz
+	https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip
+"
+
+LICENSE="AGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="dedicated libressl server"
+
+RDEPEND="
+	>=app-text/pandoc-${PANDOC_VER}
+	dev-java/aopalliance:1
+	dev-java/gin:2.1
+	dev-java/gwt:2.8
+	dev-java/javax-inject
+	=dev-java/validation-api-1.0*:1.0[source]
+	dev-haskell/pandoc-citeproc
+	dev-lang/R
+	dev-libs/boost:=
+	>=dev-libs/mathjax-2.7.4
+	sys-apps/util-linux
+	sys-devel/clang:*
+	sys-libs/zlib
+	>=virtual/jre-1.8:=
+	x11-libs/pango
+	!dedicated? (
+		>=dev-qt/qtcore-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtdbus-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtgui-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtopengl-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)]
+		>=dev-qt/qtsensors-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtsql-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtsvg-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtwebengine-${QT_VER}:${QT_SLOT}[widgets]
+		>=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtxml-${QT_VER}:${QT_SLOT}
+		>=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT}
+		server? ( sys-libs/pam )
+	)
+	dedicated? ( sys-libs/pam )
+	dedicated? (
+		sys-libs/pam
+		acct-user/rstudio-server
+		acct-group/rstudio-server
+	)
+	server? (
+		acct-user/rstudio-server
+		acct-group/rstudio-server
+	)
+	!libressl? ( dev-libs/openssl:0= )
+	libressl? ( dev-libs/libressl:0= )"
+DEPEND="${RDEPEND}
+	app-arch/unzip
+	dev-java/ant-core
+	>=virtual/jdk-1.8:=
+	virtual/pkgconfig"
+#	test? ( dev-java/junit:4 )
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.2.5033-prefs.patch
+	"${FILESDIR}"/${PN}-1.2.5033-paths.patch
+	"${FILESDIR}"/${PN}-1.2.5033-pandoc.patch
+	"${FILESDIR}"/${PN}-1.2.1335-linker_flags.patch
+	"${FILESDIR}"/${PN}-1.2.1335-qtsingleapplication.patch
+	"${FILESDIR}"/${PN}-1.0.44-systemd.patch
+	"${FILESDIR}"/${PN}-1.2.1335-core.patch
+	"${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch
+	"${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch
+)
+
+src_unpack() {
+	unpack ${P}.tar.gz
+	cd "${S}" || die
+	mkdir -p dependencies/common/dictionaries
+	unzip -qd dependencies/common/dictionaries \
+		"${DISTDIR}"/core-dictionaries.zip || die
+}
+
+src_prepare() {
+	cmake-utils_src_prepare
+	java-pkg-2_src_prepare
+	egit_clean
+
+	# Enable CMake to install our .service file for systemd usage
+	mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die
+	cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die
+
+	# Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using
+	# this sed hack for now. ~RMH
+	sed -i \
+		-e "s|DISTRO_SHARE|\"share/${PN}\"|g" \
+		src/cpp/server/ServerOptions.cpp \
+		src/cpp/session/SessionOptions.cpp || die
+
+	# use mathjax from system
+	ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die
+
+	# make sure icons and mime stuff are with prefix
+	sed -i \
+		-e "s:/usr:${EPREFIX}/usr:g" \
+		CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die
+
+	# install themes in /etc/rstudio/extra/sthemes instead of /usr/extra/themes
+	sed -i \
+		-e "s@\(DESTINATION \"\)\(extras/themes\"\)@\1${EROOT}/etc/rstudio/\2@" \
+		src/cpp/server/CMakeLists.txt || die
+
+	# On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf
+	sed -e "s@/etc/rstudio/rserver.conf@${EROOT}/etc/conf.d/rstudio-server.conf@" \
+		-i src/cpp/server/ServerOptions.cpp \
+		|| die
+
+	# Set the rsession.conf file location for Gentoo prefix
+	sed -e "s@/etc/rstudio/rsession.conf@${EROOT}/etc/rstudio/rsession.conf@" \
+		-i src/cpp/session/SessionOptions.cpp \
+		|| die
+
+	# dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module.
+	# It provides a library that has its version number appended to the end,
+	# which is difficult to handle in cmake, as find_library does not support
+	# searching for wildcard library names. So I find the library name from the
+	# qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt.
+	rm -rf "${S}"/src/cpp/desktop/3rdparty || die
+	local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \
+				   $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \
+					 | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \
+						   -e 's@LIBS \*= -l@@')
+	sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \
+		-i "${S}"/src/cpp/desktop/CMakeLists.txt \
+		|| die
+
+	# The git commit for tag: git rev-list -n 1 v${PV}
+	sed -e 's@git ARGS rev-parse HEAD@echo ARGS 6871a99b32add885fe6fa3d50fe15f62346142e7@'\
+		-i "${S}"/CMakeLists.txt \
+		"${S}"/CMakeGlobals.txt \
+		|| die
+
+	eprefixify src/gwt/build.xml
+}
+
+src_configure() {
+	export RSTUDIO_VERSION_MAJOR=$(ver_cut 1)
+	export RSTUDIO_VERSION_MINOR=$(ver_cut 2)
+	export RSTUDIO_VERSION_PATCH=$(ver_cut 3)
+
+	local mycmakeargs=(
+		-DDISTRO_SHARE=share/${PN}
+		-DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")")
+		-DRSTUDIO_VERIFY_R_VERSION=FALSE
+		)
+
+	if use !dedicated; then
+		mycmakeargs+=(
+			-DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")"
+			-DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake
+		)
+	fi
+	cmake-utils_src_configure
+}
+
+src_compile() {
+	local JAVA_ANT_REWRITE_CLASSPATH="yes"
+	local EANT_BUILD_XML="src/gwt/build.xml"
+	local EANT_BUILD_TARGET="clean"
+	java-pkg-2_src_compile
+
+	# Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny
+	# P: /root/.oracle_jre_usage.
+	export ANT_OPTS="-Duser.home=${T}"
+	cmake-utils_src_compile
+}
+
+src_install() {
+	export ANT_OPTS="-Duser.home=${T}"
+	cmake-utils_src_install
+	use dedicated || pax-mark m "${ED}/usr/bin/rstudio"
+	doconfd "${FILESDIR}"/rstudio-server.conf
+	dodir /etc/rstudio
+	insinto /etc/rstudio
+	doins "${FILESDIR}"/rsession.conf
+	dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf
+	if use dedicated || use server; then
+		dopamd src/cpp/server/extras/pam/rstudio
+		newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server
+	fi
+}
+
+pkg_preinst() {
+	java-pkg-2_pkg_preinst
+}
+
+pkg_postinst() {
+	use dedicated || { xdg_desktop_database_update
+		xdg_mimeinfo_database_update
+		xdg_icon_cache_update ;}
+}
+
+pkg_postrm() {
+	use dedicated || { xdg_desktop_database_update
+		xdg_mimeinfo_database_update
+		xdg_icon_cache_update ;}
+}