diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2020-05-30 11:44:06 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2020-05-30 11:44:06 +0100 |
| commit | f516638b7fe9592837389826a6152a7e1b251c54 (patch) | |
| tree | 8bfecb640b7b6403d7a3d662d923eed630033da7 /sci-mathematics/rstudio | |
| parent | 1a61119f9f7b057830e2ce0563f913ec86f282ad (diff) | |
gentoo resync : 30.05.2020
Diffstat (limited to 'sci-mathematics/rstudio')
26 files changed, 509 insertions, 1788 deletions
diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest index e74624932965..9e8a45e50785 100644 --- a/sci-mathematics/rstudio/Manifest +++ b/sci-mathematics/rstudio/Manifest @@ -1,52 +1,29 @@ AUX rsession.conf 1145 BLAKE2B 81e0ba1c273cbebe1fcd95917cbfd9269525e4994f594734207972948ffbda5f500483ea21678dd15f28aed25ca060698f710fc3586522043347e55d3f4890a1 SHA512 90395faac5aa80ce52ae56da3565512b8a880a14ab2acf9a24c7a56c9d03f1e3d5f63ebaca66efa68f5c5c9c831235846df22ca37f20ba071437a2a963b808cf -AUX rstudio-0.98.490-linker_flags.patch 806 BLAKE2B dc32a4a3bbe7ed2467c187aab7a1cfa0dae3862db8b091edff69608163181f4d073d94a58ce017b94b5d4701783eb41561de5e1b4a73a49ea349129f4a8650d1 SHA512 2049077768ef72faf502387b5eeef80948d0ec748bc52df7bff6e507dd92a8c52b3a7f7f82eda526ea1289f16720ae51fd40c059bd2d04f5eacd51911b995f06 -AUX rstudio-0.99.473-qtsingleapplication.patch 1889 BLAKE2B 1346ed138abd08318f23cbe4b34a0d2ee4ac0cf83206eba04c238c08c659859c11e207e3e6d03ad23e5baf6353a5f8ad49fbdffcea31104dc810fbb05f4ec9c3 SHA512 07af71ac080c0a2d4c2c62ec8f0ac451e6100a94e5360fafd274c62e2205d60d0c4b7fe18ed4536e515fa4a51a4ab819e47c529ce4fcbf93532dbb57e123fb37 -AUX rstudio-0.99.879-prefs.patch 1859 BLAKE2B f324ab7b87e7cef32ac8b2718059200e4040d82258ba6d47bf41527ba413627b5a0971924ce3e1bfa1337d206838cb9f1ade11a1fe35786fe2371b0cb86a4c11 SHA512 987d46d7dd8955ae55f29aa2ca51241697405d8219b719342a5e8b6621dcec8bffa5b41d09a82e03d65c6b9797fb6aea8791ea161f4406600a5d5bd20aaf00f8 -AUX rstudio-1.0.44-paths.patch 6722 BLAKE2B 46351eb6eda15f74b03f1c5beb0b22bb835f4312af1889997e042657383a0130986bf4ecbc45dac98aafed7c317048e8bb380287a79be696c5c0a403e5633857 SHA512 6191520733f33466cf45bcc102a386763acc37a0cc1c58718cb59f3e3b5549afe5a051039f50aa390d773433d992cdff11bdf27c7e2960eb6177cd99c3169828 AUX rstudio-1.0.44-systemd.patch 1060 BLAKE2B c5417748653b60c85cacfaab08f2baf6936c3c2d76fe0c23702fe006c4f13de9d17a3556c05c0f47be41c6f4629d92da265861b1c689415bbdd59a515d1848af SHA512 3559fc0cb229b50fbfd4361e5be982396d563e41475878f15f870609caa9f85bd50b32f90b8f8d9c432287cb7286920dca21279bc5bfb33f1fd95a0ce68a2c4e -AUX rstudio-1.1.357-clang-pandoc.patch 3240 BLAKE2B bc7f55d2f2cea64643d02af314afbbd0df1d986889d0d3a2bbf6878e9f8ec7d73710c7e631bf0cbf04b4ecf4142236ef7a1dc0a073d34958a8bd0828594f605d SHA512 3a2fc154f934b4bbd92df6359dc26c27bf2f4f06b2dde572faba3c083879c8e0e98ed776701282d9f3a5cb3f4ac2416e04e6a30beedf4ffa5cbeca3a7e72421b -AUX rstudio-1.1.453-boost-1.67.0.patch 1920 BLAKE2B d360259929a73ca6ed7b59997e34dfb2f40992ad6a25372fa2465d07c6df93838d62f5c9dd54b3b45850056bdcba24d20f84eda9480103e71feeac0b20df0a1b SHA512 250c16695c42b03d59ed690de8fc38494ac52047f5fe88b82df431082d524a396266c2b7e8c6afbf3b25e08102d99ef37b3892d62e7bc134f872718880660709 -AUX rstudio-1.1.453-core.patch 5843 BLAKE2B 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4f9364692348bb52cbd12cc6ee447841cb0c805327f2518b2a9545920b602b954a98dea68ccb3daf32d2c3bab6464fb15402844d93277193315f1ae7b3ca5190 SHA512 3162317c4c20cfc1497e952a8235867084d629ae88407e6c465b3e208adb1dc97abfe6b9922e0374ddf4c8e38a76e112942bd312c54a66f74e6f2a3fe4c0a07c -EBUILD rstudio-1.1.463-r1.ebuild 8689 BLAKE2B ab91995b112b4d3e888c688b72109ed47468c8b72e13aa3066ecb51c213a46471f42f5bb517e8e2a82a623771eeebf917c02d85cd4322dbb1992687fd93d6c86 SHA512 0bffca8ab03f91e4aa2ee24df21b9a102260eb587d1127f885d591221171dd691c347fb87a5e11a5e191c9a363daf13210310acafbb47405951c2bc2c38c18d0 -EBUILD rstudio-1.2.1335.ebuild 8688 BLAKE2B b02dac6ce848799534e95fa016d481526bf09525c84834f604dc6cbfe625e2b4d278fc4554119be6edfd27ad987c4cb9cfa48f56f0c5d165450ea8bfa2a7f276 SHA512 fd846f875b2a9c3e9e992371b8cd11ebe95f27e7b3252181fad50ce3a7ae3bd77b652742e0f4fb6f163cfd903d90dd4e701a29427509ca07615717c5e3d69912 -EBUILD rstudio-1.2.5033.ebuild 7183 BLAKE2B 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5b6481bbe0d02d6751ab19df0ac2a12e8d71399cb13999d65f1c6b0ce2fab49eb0ad7e55b458933d6c3fc2490f2ecc2a5e4e0c5b41c7e36a978bf825bc27f8c5 SHA512 14a307c42c979fb18c19ccf0bb68322d9382dba785421120c21c77aac666b0517e069cb60f408baa53c349c1f3b6f8ab2a59db442ec377a244ce462b395ddb1c +EBUILD rstudio-1.2.5042.ebuild 7256 BLAKE2B 24303ced907ff45ff66fbab6638f7bda958849ae977e0b3f37e00eb396b7ff6169ae7e10b2285c804e9cec2131cce8d45bfa8197096774fef06fc859460c5aad SHA512 f5c36843edbd62a80891b1a148081e163254fcdbdc94aafd4c9051992d63704dc360c0ee129ba92b9cc0a63e39c8cf6be258606db3b1a8831f1ee8a7110ad08c +EBUILD rstudio-1.3.959.ebuild 7047 BLAKE2B 78861c03e1b7aff68ba63cc00503e09eca8d67b77df12161f8bed33d226440fc70e76b584cfb4a6236836250791d6d50f127c57c9ffc36add95866db7b19ca5e SHA512 0ae6d91439d4fb22eb27d9e58d9d5bf05f6cb063e947f4431593f9cb5c60b85e9e817cd668cb1a5d8313d74ed6cb6f0136ef370a45ef4da7f1f17a9e7c8ba0ca MISC metadata.xml 590 BLAKE2B 53dc62775e118c9c26ee05e20ee1da1ac31b6a6b74cf7dac410856fe4e0cce40fbb800c7a03e60f59e14442baf3aad866ad42616ad5fbb5724f7f6d8c1636eea SHA512 7111442aaa52da1e554c34f824113ec0e227798dd11b0ea9148b81e7a31c08b2a527b9995e3adb9363c7a4f2a8594f30cbd4a179545bf31d69f07d5558c20f52 diff --git a/sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch b/sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch deleted file mode 100644 index a336fccbc981..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-0.98.490-linker_flags.patch +++ /dev/null @@ -1,18 +0,0 @@ -Some gcc hardening options were added, however since we add -"-Wl,--as-needed" we end up with "-Wl,--as-needed;-Wl,-z,relro" which -leads to linker errors about unknown options, if we make it so the -as-needed option is the last option on the line, everything is fine. - -diff --git a/src/cpp/CMakeLists.txt b/src/cpp/CMakeLists.txt -index 0589ca0..fe5bd5f 100644 ---- a/src/cpp/CMakeLists.txt -+++ b/src/cpp/CMakeLists.txt -@@ -57,7 +57,7 @@ if(UNIX) - add_definitions(-D_FORTIFY_SOURCE=2) - add_definitions(-fstack-protector --param ssp-buffer-size=4) - add_definitions(-pie -fPIE) -- set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -Wl,-z,relro,-z,now") -+ set(CMAKE_EXE_LINKER_FLAGS "-Wl,-z,relro,-z,now ${CMAKE_EXE_LINKER_FLAGS}") - endif() - - # Win32 specific global directives diff --git a/sci-mathematics/rstudio/files/rstudio-0.99.879-prefs.patch b/sci-mathematics/rstudio/files/rstudio-0.99.879-prefs.patch deleted file mode 100644 index 483613cc5c09..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-0.99.879-prefs.patch +++ /dev/null @@ -1,45 +0,0 @@ ---- rstudio-0.99.879-orig/src/gwt/build.xml 2016-02-12 09:24:39.000000000 +1100 -+++ rstudio-0.99.879/src/gwt/build.xml 2016-02-20 00:25:39.458756693 +1100 -@@ -25,6 +25,7 @@ - <property name="gwt.extra.args" value=""/> - <property name="gwt.main.module" value="org.rstudio.studio.RStudio"/> - <property name="ace.bin" value="src/org/rstudio/studio/client/workbench/views/source/editors/text/ace"/> -+ <property environment="env"/> - - <path id="project.class.path"> - <pathelement location="bin"/> -@@ -101,8 +102,10 @@ - <pathelement location="src"/> - <path refid="project.class.path"/> - </classpath> -+ <jvmarg value="-Duser.home=${env.T}"/> - <!-- add jvmarg -Xss16M or similar if you see a StackOverflowError --> - <jvmarg value="-Xmx1536M"/> -+ <jvmarg value="-Djava.util.prefs.userRoot=${env.T}"/> - <arg value="-war"/> - <arg value="www"/> - <arg value="-localWorkers"/> -@@ -142,6 +145,7 @@ - <pathelement location="src"/> - <path refid="project.class.path"/> - </classpath> -+ <jvmarg value="-Duser.home=${env.T}"/> - <jvmarg value="-Xmx2048M"/> - <arg value="-war"/> - <arg value="www"/> -@@ -163,6 +167,7 @@ - <pathelement location="src"/> - <path refid="project.class.path"/> - </classpath> -+ <jvmarg value="-Duser.home=${env.T}"/> - <jvmarg value="-Xmx2048M"/> - <arg value="-src"/> - <arg value = "src"/> -@@ -194,6 +199,7 @@ - <pathelement location="src"/> - <path refid="test.class.path"/> - </classpath> -+ <jvmarg value="-Duser.home=${env.T}"/> - <arg value="org.rstudio.studio.selenium.RStudioTestSuite"/> - </java> - </sequential> diff --git a/sci-mathematics/rstudio/files/rstudio-1.0.44-paths.patch b/sci-mathematics/rstudio/files/rstudio-1.0.44-paths.patch deleted file mode 100644 index b2a1a33b44c2..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.0.44-paths.patch +++ /dev/null @@ -1,130 +0,0 @@ ---- rstudio-1.0.44-orig/CMakeGlobals.txt 2016-10-19 08:32:41.000000000 +1100 -+++ rstudio-1.0.44/CMakeGlobals.txt 2016-12-01 23:33:04.149326324 +1100 -@@ -123,7 +123,7 @@ - else() - set(RSTUDIO_INSTALL_BIN bin) - endif() -- set(RSTUDIO_INSTALL_SUPPORTING .) -+ set(RSTUDIO_INSTALL_SUPPORTING ${DISTRO_SHARE}) - endif() - - # if the install prefix is /usr/local then tweak as appropriate ---- rstudio-1.0.44-orig/src/cpp/server/CMakeLists.txt 2016-10-19 08:32:41.000000000 +1100 -+++ rstudio-1.0.44/src/cpp/server/CMakeLists.txt 2016-12-01 23:35:51.634862018 +1100 -@@ -155,7 +155,7 @@ - configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}.in - ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}) - install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT} -- DESTINATION ${RSERVER_INITD_DEBIAN_DIR}) -+ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_DEBIAN_DIR}) - - # install configured redhat init.d script - set(RSERVER_INITD_REDHAT_DIR "extras/init.d/redhat") -@@ -163,7 +163,7 @@ - configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}.in - ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}) - install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT} -- DESTINATION ${RSERVER_INITD_REDHAT_DIR}) -+ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_REDHAT_DIR}) - - # install configured suse init.d script - set(RSERVER_INITD_SUSE_DIR "extras/init.d/suse") -@@ -171,13 +171,13 @@ - configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_SUSE_SCRIPT}.in - ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT}) - install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT} -- DESTINATION ${RSERVER_INITD_SUSE_DIR}) -+ DESTINATION ${DISTRO_SHARE}/${RSERVER_INITD_SUSE_DIR}) - - # install pam profile - set(RSERVER_PAM_DIR "extras/pam") - set(RSERVER_PAM_PROFILE "${RSERVER_PAM_DIR}/rstudio") - install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_PAM_PROFILE} -- DESTINATION ${RSERVER_PAM_DIR}) -+ DESTINATION ${DISTRO_SHARE}/${RSERVER_PAM_DIR}) - - # install configured apparmor profile - set(RSERVER_APPARMOR_DIR "extras/apparmor") -@@ -185,9 +185,9 @@ - configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_APPARMOR_PROFILE}.in - ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_APPARMOR_PROFILE}) - install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_APPARMOR_PROFILE} -- DESTINATION ${RSERVER_APPARMOR_DIR}) -+ DESTINATION ${DISTRO_SHARE}/${RSERVER_APPARMOR_DIR}) - install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_APPARMOR_DIR}/apparmor-profile-load -- DESTINATION ${RSERVER_APPARMOR_DIR}) -+ DESTINATION ${DISTRO_SHARE}/${RSERVER_APPARMOR_DIR}) - - # install configured upstart profile - set(RSERVER_UPSTART_DIR "extras/upstart") -@@ -195,12 +195,12 @@ - configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE}.in - ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE}) - install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE} -- DESTINATION ${RSERVER_UPSTART_DIR}) -+ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR}) - set(RSERVER_UPSTART_PROFILE_REDHAT "${RSERVER_UPSTART_DIR}/rstudio-server.redhat.conf") - configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}.in - ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT}) - install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE_REDHAT} -- DESTINATION ${RSERVER_UPSTART_DIR}) -+ DESTINATION ${DISTRO_SHARE}/${RSERVER_UPSTART_DIR}) - - # install configured systemd profile - set(RSERVER_SYSTEMD_DIR "extras/systemd") ---- rstudio-1.0.44-orig/src/cpp/server/ServerOptions.cpp 2016-10-19 08:32:41.000000000 +1100 -+++ rstudio-1.0.44/src/cpp/server/ServerOptions.cpp 2016-12-01 23:33:04.151326331 +1100 -@@ -386,8 +386,8 @@ - - // convert relative paths by completing from the system installation - // path (this allows us to be relocatable) -- resolvePath(resourcePath, &wwwLocalPath_); -- resolvePath(resourcePath, &wwwSymbolMapsPath_); -+ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_); -+ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_); - resolvePath(binaryPath, &authPamHelperPath_); - resolvePath(binaryPath, &rsessionPath_); - resolvePath(binaryPath, &rldpathPath_); ---- rstudio-1.0.44-orig/src/cpp/session/SessionOptions.cpp 2016-10-19 08:32:41.000000000 +1100 -+++ rstudio-1.0.44/src/cpp/session/SessionOptions.cpp 2016-12-01 23:33:04.151326331 +1100 -@@ -49,7 +49,7 @@ - namespace session { - - namespace { --const char* const kDefaultPandocPath = "bin/pandoc"; -+const char* const kDefaultPandocPath = "bin"; - const char* const kDefaultPostbackPath = "bin/postback/rpostback"; - const char* const kDefaultRsclangPath = "bin/rsclang"; - -@@ -481,14 +481,14 @@ - } - - // convert relative paths by completing from the app resource path -- resolvePath(resourcePath_, &rResourcesPath_); -- resolvePath(resourcePath_, &agreementFilePath_); -- resolvePath(resourcePath_, &wwwLocalPath_); -- resolvePath(resourcePath_, &wwwSymbolMapsPath_); -- resolvePath(resourcePath_, &coreRSourcePath_); -- resolvePath(resourcePath_, &modulesRSourcePath_); -- resolvePath(resourcePath_, &sessionLibraryPath_); -- resolvePath(resourcePath_, &sessionPackageArchivesPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &rResourcesPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &agreementFilePath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwLocalPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &coreRSourcePath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &modulesRSourcePath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionLibraryPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionPackageArchivesPath_); - resolvePostbackPath(resourcePath_, &rpostbackPath_); - #ifdef _WIN32 - resolvePath(resourcePath_, &consoleIoPath_); -@@ -498,7 +498,7 @@ - resolvePath(resourcePath_, &sumatraPath_); - resolvePath(resourcePath_, &winutilsPath_); - #endif -- resolvePath(resourcePath_, &hunspellDictionariesPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &hunspellDictionariesPath_); - resolvePath(resourcePath_, &mathjaxPath_); - resolvePath(resourcePath_, &libclangHeadersPath_); - resolvePandocPath(resourcePath_, &pandocPath_); diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.357-clang-pandoc.patch b/sci-mathematics/rstudio/files/rstudio-1.1.357-clang-pandoc.patch deleted file mode 100644 index 28b0220912a0..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.1.357-clang-pandoc.patch +++ /dev/null @@ -1,76 +0,0 @@ -Index: rstudio-1.1.357/src/cpp/session/CMakeLists.txt -=================================================================== ---- rstudio-1.1.357.orig/src/cpp/session/CMakeLists.txt -+++ rstudio-1.1.357/src/cpp/session/CMakeLists.txt -@@ -25,9 +25,6 @@ endif() - if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-26") - message(FATAL_ERROR "Mathjax 2.6 not found (re-run install-dependencies script to install)") - endif() --if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc") -- message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)") --endif() - - # we often install embedded versions of these packages but don't do so currently - -@@ -38,22 +35,6 @@ endif() - # message(FATAL_ERROR "rsconnect package not found (re-run install-dependencies script to install)") - # endif() - --# verify libclang is installed --if(WIN32) -- set(LIBCLANG_VERSION "3.4") --else() -- set(LIBCLANG_VERSION "3.5") --endif() --set(LIBCLANG_DIR "${RSTUDIO_DEPENDENCIES_DIR}/common/libclang/${LIBCLANG_VERSION}") --if(NOT EXISTS "${LIBCLANG_DIR}") -- message(FATAL_ERROR "libclang ${LIBCLANG_VERSION} not found (re-run install-dependencies script to install)") --endif() --set(LIBCLANG_HEADERS_DIR "${RSTUDIO_DEPENDENCIES_DIR}/common/libclang/builtin-headers") --if(NOT EXISTS "${LIBCLANG_HEADERS_DIR}") -- message(FATAL_ERROR "libclang builtin-headers not found (re-run install-dependencies script to install)") --endif() -- -- - # include files - file(GLOB_RECURSE SESSION_HEADER_FILES "*.h*") - -@@ -465,13 +446,6 @@ if (NOT RSTUDIO_SESSION_WIN64) - install(DIRECTORY "resources/connections" - DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources) - -- # install pandoc -- set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/1.19.2.1") -- file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*") -- install(FILES ${PANDOC_FILES} -- PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE -- DESTINATION ${RSTUDIO_INSTALL_BIN}/pandoc) -- - # install rmarkdown package - # file(GLOB RMARKDOWN_PACKAGE "${RSTUDIO_DEPENDENCIES_DIR}/common/rmarkdown*.tar.gz") - # install(FILES ${RMARKDOWN_PACKAGE} -@@ -502,24 +476,6 @@ if (NOT RSTUDIO_SESSION_WIN64) - install(DIRECTORY "resources/profiler" - DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources) - -- # install libclang -- if(WIN32) -- file(GLOB LIBCLANG_32_FILES "${LIBCLANG_DIR}/x86/libclang.*") -- install(PROGRAMS ${LIBCLANG_32_FILES} -- DESTINATION ${RSTUDIO_INSTALL_BIN}/rsclang/x86) -- file(GLOB LIBCLANG_64_FILES "${LIBCLANG_DIR}/x86_64/libclang.*") -- install(PROGRAMS ${LIBCLANG_64_FILES} -- DESTINATION ${RSTUDIO_INSTALL_BIN}/rsclang/x86_64) -- else() -- file(GLOB_RECURSE LIBCLANG_FILES "${LIBCLANG_DIR}/libclang.*") -- install(PROGRAMS ${LIBCLANG_FILES} -- DESTINATION ${RSTUDIO_INSTALL_BIN}/rsclang) -- endif() -- -- # install libclang builtin-headers -- install(DIRECTORY "${RSTUDIO_DEPENDENCIES_DIR}/common/libclang/builtin-headers" -- DESTINATION "${RSTUDIO_INSTALL_SUPPORTING}/resources/libclang") -- - # install winpty on windows - if(WIN32) - install(PROGRAMS "${WINPTY_BINDIR_32}/winpty.dll" diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.453-boost-1.67.0.patch b/sci-mathematics/rstudio/files/rstudio-1.1.453-boost-1.67.0.patch deleted file mode 100644 index 760c9b561055..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.1.453-boost-1.67.0.patch +++ /dev/null @@ -1,38 +0,0 @@ ---- rstudio-1.1.453-orig/src/cpp/core/DateTime.cpp 2018-05-15 04:19:30.000000000 +1000 -+++ rstudio-1.1.453/src/cpp/core/DateTime.cpp 2018-07-02 16:19:21.335703471 +1000 -@@ -65,7 +65,7 @@ - using namespace boost::posix_time; - - ptime time_t_epoch(date(1970,1,1)); -- return time_t_epoch + seconds(sec); -+ return time_t_epoch + seconds(static_cast<long>(sec)); - } - - boost::posix_time::ptime timeFromMillisecondsSinceEpoch(int64_t ms) ---- rstudio-1.1.453-orig/src/cpp/core/file_lock/FileLock.cpp 2018-05-15 04:19:30.000000000 +1000 -+++ rstudio-1.1.453/src/cpp/core/file_lock/FileLock.cpp 2018-07-02 17:00:35.915695201 +1000 -@@ -133,11 +133,11 @@ - - // timeout interval - double timeoutInterval = getFieldPositive(settings, "timeout-interval", kDefaultTimeoutInterval); -- FileLock::s_timeoutInterval = boost::posix_time::seconds(timeoutInterval); -+ FileLock::s_timeoutInterval = boost::posix_time::seconds(static_cast<long>(timeoutInterval)); - - // refresh rate - double refreshRate = getFieldPositive(settings, "refresh-rate", kDefaultRefreshRate); -- FileLock::s_refreshRate = boost::posix_time::seconds(refreshRate); -+ FileLock::s_refreshRate = boost::posix_time::seconds(static_cast<long>(refreshRate)); - - // logging - bool loggingEnabled = settings.getBool("enable-logging", false); -@@ -212,8 +212,8 @@ - - // default values for static members - FileLock::LockType FileLock::s_defaultType(FileLock::LOCKTYPE_LINKBASED); --boost::posix_time::seconds FileLock::s_timeoutInterval(kDefaultTimeoutInterval); --boost::posix_time::seconds FileLock::s_refreshRate(kDefaultRefreshRate); -+boost::posix_time::seconds FileLock::s_timeoutInterval(static_cast<long>(kDefaultTimeoutInterval)); -+boost::posix_time::seconds FileLock::s_refreshRate(static_cast<long>(kDefaultRefreshRate)); - bool FileLock::s_loggingEnabled(false); - bool FileLock::s_isLoadBalanced(false); - FilePath FileLock::s_logFile; diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch deleted file mode 100644 index a7a48572de30..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch +++ /dev/null @@ -1,460 +0,0 @@ ---- /dev/null 2019-03-19 11:03:33.121000004 +1100 -+++ rstudio-1.1.463/src/cpp/core/include/core/BoostSignals.hpp 2018-11-17 21:24:35.285976284 +1100 -@@ -0,0 +1,40 @@ -+/* -+ * BoostSignals.hpp -+ * -+ * Copyright (C) 2009-18 by RStudio, Inc. -+ * -+ * Unless you have received this program directly from RStudio pursuant -+ * to the terms of a commercial license agreement with RStudio, then -+ * this program is licensed to you under the terms of version 3 of the -+ * GNU Affero General Public License. This program is distributed WITHOUT -+ * ANY EXPRESS OR IMPLIED WARRANTY, INCLUDING THOSE OF NON-INFRINGEMENT, -+ * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Please refer to the -+ * AGPL (http://www.gnu.org/licenses/agpl-3.0.txt) for more details. -+ * -+ */ -+ -+#ifndef CORE_RSTUDIO_BOOST_SIGNALS_HPP -+#define CORE_RSTUDIO_BOOST_SIGNALS_HPP -+ -+#if RSTUDIO_BOOST_SIGNALS_VERSION == 1 -+ -+# include <boost/signals.hpp> -+# define RSTUDIO_BOOST_SIGNAL boost::signal -+# define RSTUDIO_BOOST_CONNECTION boost::signals::connection -+# define RSTUDIO_BOOST_SCOPED_CONNECTION boost::signals::scoped_connection -+# define RSTUDIO_BOOST_LAST_VALUE boost::last_value -+ -+#elif RSTUDIO_BOOST_SIGNALS_VERSION == 2 -+ -+# include <boost/signals2.hpp> -+# define RSTUDIO_BOOST_SIGNAL boost::signals2::signal -+# define RSTUDIO_BOOST_CONNECTION boost::signals2::connection -+# define RSTUDIO_BOOST_SCOPED_CONNECTION boost::signals2::scoped_connection -+# define RSTUDIO_BOOST_LAST_VALUE boost::signals2::last_value -+ -+#else -+# error "Unrecognized RSTUDIO_BOOST_SIGNALS_VERSION" -+#endif -+ -+#endif // CORE_RSTUDIO_BOOST_SIGNALS_HPP -+ ---- rstudio-1.1.463-orig/src/cpp/CMakeLists.txt 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/CMakeLists.txt 2018-11-17 21:24:35.285976284 +1100 -@@ -208,6 +208,18 @@ - message(STATUS "Using RStudio-provided Boost ${BOOST_VERSION}") - endif() - -+# allow opt-in to using Boost.Signals2 -+# TODO: remove this in RStudio v1.3 and port to signals2 -+if(NOT RSTUDIO_BOOST_SIGNALS_VERSION) -+ if (BOOST_VERSION VERSION_LESS 1.69.0) -+ set(RSTUDIO_BOOST_SIGNALS_VERSION 1) -+ else() -+ set(RSTUDIO_BOOST_SIGNALS_VERSION 2) -+ endif() -+endif() -+ -+message(STATUS "Using Booost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}") -+add_definitions(-DRSTUDIO_BOOST_SIGNALS_VERSION=${RSTUDIO_BOOST_SIGNALS_VERSION}) - - # add boost as system include directory - include_directories(SYSTEM ${Boost_INCLUDE_DIRS}) ---- rstudio-1.1.463-orig/src/cpp/r/include/r/session/RConsoleHistory.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/r/include/r/session/RConsoleHistory.hpp 2018-11-17 21:24:35.285976284 +1100 -@@ -20,8 +20,8 @@ - - #include <boost/utility.hpp> - #include <boost/circular_buffer.hpp> --#include <boost/signal.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/json/Json.hpp> - - namespace rstudio { -@@ -44,7 +44,7 @@ - public: - typedef boost::circular_buffer<std::string>::value_type value_type; - typedef boost::circular_buffer<std::string>::const_iterator const_iterator; -- typedef boost::signal<void (const std::string&)> AddSignal; -+ typedef RSTUDIO_BOOST_SIGNAL<void (const std::string&)> AddSignal; - - private: - ConsoleHistory(); -@@ -86,8 +86,7 @@ - core::Error loadFromFile(const core::FilePath& filePath, bool verifyFile); - core::Error saveToFile(const core::FilePath& filePath) const; - -- boost::signals::connection connectOnAdd( -- const AddSignal::slot_function_type& slot) -+ RSTUDIO_BOOST_CONNECTION connectOnAdd(const AddSignal::slot_function_type& slot) - { - return onAdd_.connect(slot); - } ---- rstudio-1.1.463-orig/src/cpp/r/include/r/session/RGraphics.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/r/include/r/session/RGraphics.hpp 2018-11-17 21:24:35.286976293 +1100 -@@ -19,6 +19,8 @@ - #include <boost/system/error_code.hpp> - #include <boost/date_time/posix_time/ptime.hpp> - -+#include <core/BoostSignals.hpp> -+ - namespace rstudio { - namespace r { - namespace session { -@@ -56,8 +58,8 @@ - #include <vector> - - #include <boost/function.hpp> --#include <boost/signal.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/Error.hpp> - #include <core/json/Json.hpp> - -@@ -162,7 +164,7 @@ - virtual void clear() = 0; - - // subscribe to showManipulator event -- virtual boost::signal<void ()>& onShowManipulator() = 0; -+ virtual RSTUDIO_BOOST_SIGNAL<void ()>& onShowManipulator() = 0; - - // set manipulator values - virtual void setPlotManipulatorValues(const core::json::Object& values) = 0; ---- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManager.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManager.cpp 2018-11-17 21:24:35.286976293 +1100 -@@ -540,7 +540,7 @@ - - - --boost::signal<void ()>& PlotManager::onShowManipulator() -+RSTUDIO_BOOST_SIGNAL<void ()>& PlotManager::onShowManipulator() - { - return plotManipulatorManager().onShowManipulator(); - } ---- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManager.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManager.hpp 2018-11-17 21:24:35.287976303 +1100 -@@ -22,10 +22,10 @@ - #include <boost/utility.hpp> - #include <boost/shared_ptr.hpp> - #include <boost/function.hpp> --#include <boost/signal.hpp> - #include <boost/regex.hpp> - #include <boost/circular_buffer.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/Error.hpp> - #include <core/FilePath.hpp> - -@@ -45,10 +45,10 @@ - - struct GraphicsDeviceEvents - { -- boost::signal<void (SEXP)> onNewPage; -- boost::signal<void ()> onDrawing; -- boost::signal<void ()> onResized; -- boost::signal<void ()> onClosed; -+ RSTUDIO_BOOST_SIGNAL<void (SEXP)> onNewPage; -+ RSTUDIO_BOOST_SIGNAL<void ()> onDrawing; -+ RSTUDIO_BOOST_SIGNAL<void ()> onResized; -+ RSTUDIO_BOOST_SIGNAL<void ()> onClosed; - }; - - class PlotManipulatorManager; -@@ -110,7 +110,7 @@ - - virtual void clear(); - -- virtual boost::signal<void ()>& onShowManipulator() ; -+ virtual RSTUDIO_BOOST_SIGNAL<void ()>& onShowManipulator() ; - virtual void setPlotManipulatorValues(const core::json::Object& values); - virtual void manipulatorPlotClicked(int x, int y); - ---- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.cpp 2018-11-17 21:24:35.287976303 +1100 -@@ -184,7 +184,7 @@ - } - - --boost::signal<void ()>& PlotManipulatorManager::onShowManipulator() -+RSTUDIO_BOOST_SIGNAL<void ()>& PlotManipulatorManager::onShowManipulator() - { - return onShowManipulator_; - } ---- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.hpp 2018-11-17 21:24:35.287976303 +1100 -@@ -16,8 +16,7 @@ - #ifndef R_SESSION_GRAPHICS_PLOT_MANIPULATOR_MANAGER_HPP - #define R_SESSION_GRAPHICS_PLOT_MANIPULATOR_MANAGER_HPP - --#include <boost/signal.hpp> -- -+#include <core/BoostSignals.hpp> - #include <core/Error.hpp> - #include <core/json/Json.hpp> - -@@ -53,7 +52,7 @@ - public: - core::Error initialize(const UnitConversionFunctions& convert); - -- boost::signal<void ()>& onShowManipulator() ; -+ RSTUDIO_BOOST_SIGNAL<void ()>& onShowManipulator() ; - void setPlotManipulatorValues(const core::json::Object& values); - void manipulatorPlotClicked(int x, int y); - -@@ -85,7 +84,7 @@ - bool replayingManipulator_; - - // manipulator event hook -- boost::signal<void ()> onShowManipulator_; -+ RSTUDIO_BOOST_SIGNAL<void ()> onShowManipulator_; - - // unit conversion function - UnitConversionFunctions convert_; ---- rstudio-1.1.463-orig/src/cpp/server/include/server/ServerSessionManager.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/server/include/server/ServerSessionManager.hpp 2018-11-17 21:27:05.255436316 +1100 -@@ -20,9 +20,9 @@ - #include <vector> - #include <map> - --#include <boost/signals.hpp> - #include <boost/asio/io_service.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/Thread.hpp> - - #include <core/system/PosixSystem.hpp> ---- rstudio-1.1.463-orig/src/cpp/session/SessionMain.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/SessionMain.cpp 2018-11-17 21:24:35.288976313 +1100 -@@ -33,12 +33,12 @@ - #include <boost/lexical_cast.hpp> - #include <boost/format.hpp> - --#include <boost/signals.hpp> - #include <boost/date_time/posix_time/posix_time.hpp> - #include <boost/algorithm/string/predicate.hpp> - #include <boost/algorithm/string/join.hpp> - - #include <core/Error.hpp> -+#include <core/BoostSignals.hpp> - #include <core/BoostThread.hpp> - #include <core/ConfigUtils.hpp> - #include <core/FilePath.hpp> ---- rstudio-1.1.463-orig/src/cpp/session/SessionModuleContext.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/SessionModuleContext.cpp 2018-11-17 21:24:35.289976322 +1100 -@@ -19,10 +19,10 @@ - - #include <boost/assert.hpp> - #include <boost/utility.hpp> --#include <boost/signal.hpp> - #include <boost/format.hpp> - #include <boost/numeric/conversion/cast.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/BoostThread.hpp> - #include <core/Error.hpp> - #include <core/FilePath.hpp> -@@ -586,13 +586,13 @@ - - int nextGroup_; - -- boost::signal<void(const r::session::RSuspendOptions&,Settings*), -- boost::last_value<void>, -+ RSTUDIO_BOOST_SIGNAL<void(const r::session::RSuspendOptions&,Settings*), -+ RSTUDIO_BOOST_LAST_VALUE<void>, - int, - std::less<int> > suspendSignal_; - -- boost::signal<void(const Settings&), -- boost::last_value<void>, -+ RSTUDIO_BOOST_SIGNAL<void(const Settings&), -+ RSTUDIO_BOOST_LAST_VALUE<void>, - int, - std::greater<int> > resumeSignal_; - }; ---- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionConsoleProcess.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/include/session/SessionConsoleProcess.hpp 2018-11-17 21:24:35.290976332 +1100 -@@ -20,10 +20,10 @@ - #include <deque> - - #include <boost/regex.hpp> --#include <boost/signals.hpp> - #include <boost/circular_buffer.hpp> - #include <boost/enable_shared_from_this.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/system/Process.hpp> - #include <core/terminal/PrivateCommand.hpp> - -@@ -146,7 +146,7 @@ - void setPromptHandler( - const boost::function<bool(const std::string&, Input*)>& onPrompt); - -- boost::signal<void(int)>& onExit() { return onExit_; } -+ RSTUDIO_BOOST_SIGNAL<void(int)>& onExit() { return onExit_; } - - std::string handle() const { return procInfo_->getHandle(); } - InteractionMode interactionMode() const { return procInfo_->getInteractionMode(); } -@@ -264,7 +264,7 @@ - boost::mutex inputOutputQueueMutex_; - - boost::function<bool(const std::string&, Input*)> onPrompt_; -- boost::signal<void(int)> onExit_; -+ RSTUDIO_BOOST_SIGNAL<void(int)> onExit_; - - // regex for prompt detection - boost::regex controlCharsPattern_; ---- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionModuleContext.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/include/session/SessionModuleContext.hpp 2018-11-17 21:28:25.019212857 +1100 -@@ -21,9 +21,9 @@ - - #include <boost/utility.hpp> - #include <boost/function.hpp> --#include <boost/signals.hpp> - #include <boost/shared_ptr.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/HtmlUtils.hpp> - #include <core/system/System.hpp> - #include <core/system/ShellUtils.hpp> -@@ -315,35 +315,35 @@ - // session events - struct Events : boost::noncopyable - { -- boost::signal<void (core::json::Object*)> onSessionInfo; -- boost::signal<void ()> onClientInit; -- boost::signal<void ()> onBeforeExecute; -- boost::signal<void(const std::string&)> onConsolePrompt; -- boost::signal<void(const std::string&)> onConsoleInput; -- boost::signal<void(const std::string&, const std::string&)> -+ RSTUDIO_BOOST_SIGNAL<void (core::json::Object*)> onSessionInfo; -+ RSTUDIO_BOOST_SIGNAL<void ()> onClientInit; -+ RSTUDIO_BOOST_SIGNAL<void ()> onBeforeExecute; -+ RSTUDIO_BOOST_SIGNAL<void(const std::string&)> onConsolePrompt; -+ RSTUDIO_BOOST_SIGNAL<void(const std::string&)> onConsoleInput; -+ RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&)> - onActiveConsoleChanged; -- boost::signal<void (ConsoleOutputType, const std::string&)> -+ RSTUDIO_BOOST_SIGNAL<void (ConsoleOutputType, const std::string&)> - onConsoleOutput; -- boost::signal<void()> onUserInterrupt; -- boost::signal<void (ChangeSource)> onDetectChanges; -- boost::signal<void (core::FilePath)> onSourceEditorFileSaved; -- boost::signal<void(bool)> onDeferredInit; -- boost::signal<void(bool)> afterSessionInitHook; -- boost::signal<void(bool)> onBackgroundProcessing; -- boost::signal<void(bool)> onShutdown; -- boost::signal<void ()> onQuit; -- boost::signal<void ()> onDestroyed; -- boost::signal<void (const std::vector<std::string>&)> -+ RSTUDIO_BOOST_SIGNAL<void()> onUserInterrupt; -+ RSTUDIO_BOOST_SIGNAL<void (ChangeSource)> onDetectChanges; -+ RSTUDIO_BOOST_SIGNAL<void (core::FilePath)> onSourceEditorFileSaved; -+ RSTUDIO_BOOST_SIGNAL<void(bool)> onDeferredInit; -+ RSTUDIO_BOOST_SIGNAL<void(bool)> afterSessionInitHook; -+ RSTUDIO_BOOST_SIGNAL<void(bool)> onBackgroundProcessing; -+ RSTUDIO_BOOST_SIGNAL<void(bool)> onShutdown; -+ RSTUDIO_BOOST_SIGNAL<void ()> onQuit; -+ RSTUDIO_BOOST_SIGNAL<void ()> onDestroyed; -+ RSTUDIO_BOOST_SIGNAL<void (const std::vector<std::string>&)> - onLibPathsChanged; -- boost::signal<void (const std::string&)> onPackageLoaded; -- boost::signal<void ()> onPackageLibraryMutated; -- boost::signal<void ()> onPreferencesSaved; -- boost::signal<void (const core::DistributedEvent&)> -+ RSTUDIO_BOOST_SIGNAL<void (const std::string&)> onPackageLoaded; -+ RSTUDIO_BOOST_SIGNAL<void ()> onPackageLibraryMutated; -+ RSTUDIO_BOOST_SIGNAL<void ()> onPreferencesSaved; -+ RSTUDIO_BOOST_SIGNAL<void (const core::DistributedEvent&)> - onDistributedEvent; -- boost::signal<void (core::FilePath)> onPermissionsChanged; -+ RSTUDIO_BOOST_SIGNAL<void (core::FilePath)> onPermissionsChanged; - - // signal for detecting extended type of documents -- boost::signal<std::string(boost::shared_ptr<source_database::SourceDocument>), -+ RSTUDIO_BOOST_SIGNAL<std::string(boost::shared_ptr<source_database::SourceDocument>), - firstNonEmpty<std::string> > onDetectSourceExtendedType; - }; - ---- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionSourceDatabase.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/include/session/SessionSourceDatabase.hpp 2018-11-17 21:24:35.291976342 +1100 -@@ -21,8 +21,8 @@ - - #include <boost/utility.hpp> - #include <boost/shared_ptr.hpp> --#include <boost/signals.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/FilePath.hpp> - #include <core/json/Json.hpp> - -@@ -204,14 +204,14 @@ - // source database events - struct Events : boost::noncopyable - { -- boost::signal<void(boost::shared_ptr<SourceDocument>)> onDocUpdated; -- boost::signal<void(const std::string&, -+ RSTUDIO_BOOST_SIGNAL<void(boost::shared_ptr<SourceDocument>)> onDocUpdated; -+ RSTUDIO_BOOST_SIGNAL<void(const std::string&, - boost::shared_ptr<SourceDocument>)> onDocRenamed; -- boost::signal<void(const std::string&)> onDocAdded; -- boost::signal<void( -+ RSTUDIO_BOOST_SIGNAL<void(const std::string&)> onDocAdded; -+ RSTUDIO_BOOST_SIGNAL<void( - boost::shared_ptr<source_database::SourceDocument>)> onDocPendingRemove; -- boost::signal<void(const std::string&, const std::string&)> onDocRemoved; -- boost::signal<void()> onRemoveAll; -+ RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&)> onDocRemoved; -+ RSTUDIO_BOOST_SIGNAL<void()> onRemoveAll; - }; - - Events& events(); ---- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionUserSettings.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/include/session/SessionUserSettings.hpp 2018-11-17 21:24:35.291976342 +1100 -@@ -20,8 +20,8 @@ - - #include <boost/utility.hpp> - #include <boost/scoped_ptr.hpp> --#include <boost/signal.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/Settings.hpp> - #include <core/FilePath.hpp> - #include <core/StringUtils.hpp> -@@ -62,7 +62,7 @@ - friend UserSettings& userSettings(); - - public: -- boost::signal<void()> onChanged; -+ RSTUDIO_BOOST_SIGNAL<void()> onChanged; - - public: - // COPYING: boost::noncopyable ---- rstudio-1.1.463-orig/src/cpp/session/include/session/projects/SessionProjects.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/include/session/projects/SessionProjects.hpp 2018-11-17 21:24:35.291976342 +1100 -@@ -22,8 +22,8 @@ - #include <boost/utility.hpp> - #include <boost/shared_ptr.hpp> - #include <boost/foreach.hpp> --#include <boost/signals.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/FileInfo.hpp> - #include <core/FilePath.hpp> - #include <core/Settings.hpp> -@@ -220,10 +220,10 @@ - - bool hasFileMonitor_; - std::vector<std::string> monitorSubscribers_; -- boost::signal<void(const tree<core::FileInfo>&)> onMonitoringEnabled_; -- boost::signal<void(const std::vector<core::system::FileChangeEvent>&)> -+ RSTUDIO_BOOST_SIGNAL<void(const tree<core::FileInfo>&)> onMonitoringEnabled_; -+ RSTUDIO_BOOST_SIGNAL<void(const std::vector<core::system::FileChangeEvent>&)> - onFilesChanged_; -- boost::signal<void()> onMonitoringDisabled_; -+ RSTUDIO_BOOST_SIGNAL<void()> onMonitoringDisabled_; - }; - - ProjectContext& projectContext(); diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch deleted file mode 100644 index d90ce005a1a0..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch +++ /dev/null @@ -1,220 +0,0 @@ ---- rstudio-1.1.463-orig/src/cpp/session/modules/SessionPlots.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/SessionPlots.hpp 2018-11-17 21:24:35.292976352 +1100 -@@ -16,7 +16,7 @@ - #ifndef SESSION_PLOTS_HPP - #define SESSION_PLOTS_HPP - --#include <boost/signals.hpp> -+#include <core/BoostSignals.hpp> - - namespace rstudio { - namespace core { -@@ -35,9 +35,9 @@ - - struct Events : boost::noncopyable - { -- boost::signal<void()> onBeforeNewPlot; -- boost::signal<void()> onBeforeNewGridPage; -- boost::signal<void()> onNewPlot; -+ RSTUDIO_BOOST_SIGNAL<void()> onBeforeNewPlot; -+ RSTUDIO_BOOST_SIGNAL<void()> onBeforeNewGridPage; -+ RSTUDIO_BOOST_SIGNAL<void()> onNewPlot; - }; - - Events& events(); ---- rstudio-1.1.463-orig/src/cpp/session/modules/build/SessionSourceCpp.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/build/SessionSourceCpp.cpp 2018-11-17 21:24:35.293976361 +1100 -@@ -15,11 +15,11 @@ - - #include "SessionSourceCpp.hpp" - --#include <boost/signal.hpp> - #include <boost/algorithm/string/trim.hpp> - #include <boost/algorithm/string/predicate.hpp> - #include <boost/algorithm/string/join.hpp> - -+#include <core/BoostSignals.hpp> - #include <core/Error.hpp> - #include <core/FilePath.hpp> - #include <core/StringUtils.hpp> ---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp 2018-11-17 21:24:35.294976371 +1100 -@@ -142,7 +142,7 @@ - LOG_ERROR(error); - - // capture console output, error -- boost::signals::scoped_connection consoleHandler = -+ RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler = - module_context::events().onConsoleOutput.connect( - boost::bind(chunkConsoleOutputHandler, - _1, -@@ -219,7 +219,7 @@ - LOG_ERROR(error); - - // capture console output, error -- boost::signals::scoped_connection consoleHandler = -+ RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler = - module_context::events().onConsoleOutput.connect( - boost::bind(chunkConsoleOutputHandler, - _1, -@@ -363,7 +363,7 @@ - LOG_ERROR(error); - - // capture console output, error -- boost::signals::scoped_connection consoleHandler = -+ RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler = - module_context::events().onConsoleOutput.connect( - boost::bind(chunkConsoleOutputHandler, - _1, ---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp 2018-11-17 21:24:35.294976371 +1100 -@@ -16,6 +16,8 @@ - #include "SessionRmdNotebook.hpp" - #include "NotebookCapture.hpp" - -+#include <boost/make_shared.hpp> -+ - namespace rstudio { - namespace session { - namespace modules { ---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.cpp 2018-11-17 21:24:35.295976381 +1100 -@@ -441,7 +441,7 @@ - } - - // unhook all our event handlers -- BOOST_FOREACH(const boost::signals::connection connection, connections_) -+ BOOST_FOREACH(const RSTUDIO_BOOST_CONNECTION connection, connections_) - { - connection.disconnect(); - } ---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.hpp 2018-11-17 21:24:35.295976381 +1100 -@@ -18,8 +18,7 @@ - - #include <session/SessionModuleContext.hpp> - --#include <boost/signal.hpp> -- -+#include <core/BoostSignals.hpp> - #include <core/json/Json.hpp> - - #include <r/RSexp.hpp> -@@ -99,7 +98,7 @@ - bool hasErrors_; - - std::vector<boost::shared_ptr<NotebookCapture> > captures_; -- std::vector<boost::signals::connection> connections_; -+ std::vector<RSTUDIO_BOOST_CONNECTION> connections_; - }; - - } // namespace notebook ---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp 2018-11-17 21:24:35.295976381 +1100 -@@ -20,11 +20,12 @@ - - #include <boost/format.hpp> - #include <boost/foreach.hpp> --#include <boost/signals/connection.hpp> - --#include <core/system/FileMonitor.hpp> --#include <core/StringUtils.hpp> -+#include <core/BoostSignals.hpp> - #include <core/Exec.hpp> -+#include <core/StringUtils.hpp> -+ -+#include <core/system/FileMonitor.hpp> - - #include <session/SessionModuleContext.hpp> - ---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp 2018-11-17 21:24:35.296976391 +1100 -@@ -18,8 +18,10 @@ - #define SESSION_NOTEBOOK_PLOTS_HPP - - #include <boost/function.hpp> --#include <boost/signals/connection.hpp> -+ -+#include <core/BoostSignals.hpp> - #include <core/FilePath.hpp> -+ - #include <r/RSexp.hpp> - - #include "NotebookCapture.hpp" -@@ -80,9 +82,9 @@ - - unsigned lastOrdinal_; - -- boost::signals::connection onBeforeNewPlot_; -- boost::signals::connection onBeforeNewGridPage_; -- boost::signals::connection onNewPlot_; -+ RSTUDIO_BOOST_CONNECTION onBeforeNewPlot_; -+ RSTUDIO_BOOST_CONNECTION onBeforeNewGridPage_; -+ RSTUDIO_BOOST_CONNECTION onNewPlot_; - - double width_; - double height_; ---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp 2018-11-17 21:24:35.296976391 +1100 -@@ -87,7 +87,7 @@ - pInput_->enque(kThreadQuitCommand); - - // unregister handlers -- BOOST_FOREACH(boost::signals::connection connection, handlers_) -+ BOOST_FOREACH(RSTUDIO_BOOST_CONNECTION connection, handlers_) - { - connection.disconnect(); - } -@@ -651,7 +651,7 @@ - boost::shared_ptr<ChunkExecContext> execContext_; - - // registered signal handlers -- std::vector<boost::signals::connection> handlers_; -+ std::vector<RSTUDIO_BOOST_CONNECTION> handlers_; - - // the thread which submits console input, and the queue which feeds it - boost::thread console_; ---- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp 2018-11-17 21:24:35.296976391 +1100 -@@ -18,7 +18,8 @@ - #define SESSION_RMARKDOWN_NOTEBOOK_HPP - - #include <ctime> --#include <boost/signals.hpp> -+ -+#include <core/BoostSignals.hpp> - #include <core/json/Json.hpp> - - #define kChunkLibDir "lib" -@@ -76,24 +77,24 @@ - struct Events : boost::noncopyable - { - // Document {0}, chunk {1} from context id {3} execution completed -- boost::signal<void(const std::string&, const std::string&, -+ RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&, - const std::string&)> - onChunkExecCompleted; - - // Document {0}, chunk {1} had console output of type {2} and text {3} -- boost::signal<void(const std::string&, const std::string&, int, -+ RSTUDIO_BOOST_SIGNAL<void(const std::string&, const std::string&, int, - const std::string&)> - onChunkConsoleOutput; - -- boost::signal<void(const core::FilePath&, const core::FilePath&, -+ RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&, - const core::json::Value& metadata, unsigned ordinal)> - onPlotOutput; -- boost::signal<void(const core::FilePath&, const core::FilePath&, -+ RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&, - const core::json::Value& metadata)> onHtmlOutput; -- boost::signal<void(const core::json::Object&)> onErrorOutput; -- boost::signal<void(const core::FilePath&, const core::FilePath&, -+ RSTUDIO_BOOST_SIGNAL<void(const core::json::Object&)> onErrorOutput; -+ RSTUDIO_BOOST_SIGNAL<void(const core::FilePath&, const core::FilePath&, - const core::json::Value& metadata)> onDataOutput; -- boost::signal<void(Condition condition, const std::string& message)> -+ RSTUDIO_BOOST_SIGNAL<void(Condition condition, const std::string& message)> - onCondition; - }; - diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch deleted file mode 100644 index 961723fd224f..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p3.patch +++ /dev/null @@ -1,167 +0,0 @@ ---- rstudio-1.1.463-orig/src/cpp/CMakeLists.txt 2018-11-17 21:24:35.285976284 +1100 -+++ rstudio-1.1.463/src/cpp/CMakeLists.txt 2018-11-17 21:41:02.712507842 +1100 -@@ -175,6 +175,9 @@ - set(Boost_USE_STATIC_LIBS ON) - set(BOOST_INCLUDEDIR ${RSTUDIO_TOOLS_BOOST}/include) - find_package(Boost ${BOOST_VERSION} REQUIRED) -+ if(NOT Boost_VERSION VERSION_LESS 1.69.0) -+ list(REMOVE_ITEM BOOST_LIBS signals) -+ endif() - - # define library list manually (find_package doesn't always pick them up) - set(BOOST_LIB_DIR ${RSTUDIO_TOOLS_BOOST}/lib) -@@ -184,11 +187,15 @@ - message(STATUS "Using RStudio-provided Boost ${BOOST_VERSION}") - else() - add_definitions(-DRSTUDIO_BOOST_NAMESPACE=boost) -+ find_package(Boost ${BOOST_VERSION} REQUIRED) -+ if(NOT Boost_VERSION VERSION_LESS 1.69.0) -+ list(REMOVE_ITEM BOOST_LIBS signals) -+ endif() - find_package(Boost ${BOOST_VERSION} REQUIRED COMPONENTS ${BOOST_LIBS}) - message(STATUS "Using system Boost ${BOOST_VERSION}") - endif() - -- # WIN32 BOOST -+# WIN32 BOOST - else() - # hard-code to our own prebuilt boost libs - add_definitions(-DRSTUDIO_BOOST_NAMESPACE=rstudio_boost) -@@ -211,14 +218,14 @@ - # allow opt-in to using Boost.Signals2 - # TODO: remove this in RStudio v1.3 and port to signals2 - if(NOT RSTUDIO_BOOST_SIGNALS_VERSION) -- if (BOOST_VERSION VERSION_LESS 1.69.0) -+ if (Boost_VERSION VERSION_LESS 1.69.0) - set(RSTUDIO_BOOST_SIGNALS_VERSION 1) - else() - set(RSTUDIO_BOOST_SIGNALS_VERSION 2) - endif() - endif() - --message(STATUS "Using Booost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}") -+message(STATUS "Using Boost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}") - add_definitions(-DRSTUDIO_BOOST_SIGNALS_VERSION=${RSTUDIO_BOOST_SIGNALS_VERSION}) - - # add boost as system include directory ---- rstudio-1.1.463-orig/src/cpp/core/include/core/r_util/RFunctionInformation.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/core/include/core/r_util/RFunctionInformation.hpp 2018-11-17 21:41:02.713507852 +1100 -@@ -75,9 +75,9 @@ - const std::string& name() const { return name_; } - const boost::optional<std::string>& defaultValue() const { return defaultValue_; } - boost::tribool hasDefault() const { return hasDefault_; } -- bool isUsed() const { return isUsed_; } -+ bool isUsed() const { return bool(isUsed_); } - void setIsUsed(bool value) { isUsed_ = value; } -- bool isMissingnessHandled() const { return isMissingnessHandled_; } -+ bool isMissingnessHandled() const { return bool(isMissingnessHandled_); } - void setMissingnessHandled(bool value) { isMissingnessHandled_ = value; } - - private: -@@ -130,7 +130,7 @@ - - bool isPrimitive() - { -- return isPrimitive_ == true; -+ return bool(isPrimitive_); - } - - void setIsPrimitive(bool isPrimitive) ---- rstudio-1.1.463-orig/src/cpp/session/modules/SessionRParser.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/session/modules/SessionRParser.cpp 2018-11-17 21:41:02.714507862 +1100 -@@ -390,7 +390,7 @@ - if (!failed) - { - DEBUG("--- Found function in pkgInfo index: " << *fnInfo.binding()); -- return fnInfo.performsNse(); -+ return bool(fnInfo.performsNse()); - } - - // Handle some special cases first. ---- rstudio-1.1.463-orig/src/tools/clang-ubsan-build 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/tools/clang-ubsan-build 2018-11-17 21:41:02.714507862 +1100 -@@ -10,19 +10,19 @@ - - : ${RSTUDIO_USE_LIBCXX="Yes"} - : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"} --: ${RSTUDIO_BOOST_VERSION="1.56.0"} -+: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.56.0"} - - mkdir -p "${BUILD_DIR}" - cd "${BUILD_DIR}" --cmake ../cpp \ -- -DLIBR_HOME="${R_HOME}" \ -- -DCMAKE_C_COMPILER="${CC}" \ -- -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ -- -DCMAKE_CXX_COMPILER="${CXX}" \ -- -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ -- -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \ -- -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \ -- -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}" \ -+cmake ../cpp \ -+ -DLIBR_HOME="${R_HOME}" \ -+ -DCMAKE_C_COMPILER="${CC}" \ -+ -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ -+ -DCMAKE_CXX_COMPILER="${CXX}" \ -+ -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ -+ -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \ -+ -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \ -+ -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \ - "$@" - cd .. - ---- rstudio-1.1.463-orig/src/tools/gcc-ubsan-build 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/tools/gcc-ubsan-build 2018-11-17 21:41:02.715507871 +1100 -@@ -19,19 +19,19 @@ - # NOTE: Boost 1.50.0 not compatible with gcc-6 - : ${RSTUDIO_USE_LIBCXX="No"} - : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"} --: ${RSTUDIO_BOOST_VERSION="1.54.0"} -+: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.54.0"} - - mkdir -p "${BUILD_DIR}" - cd "${BUILD_DIR}" --cmake ../cpp \ -- -DLIBR_HOME="${R_HOME}" \ -- -DCMAKE_C_COMPILER="${CC}" \ -- -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ -- -DCMAKE_CXX_COMPILER="${CXX}" \ -- -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ -- -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \ -- -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \ -- -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}" \ -+cmake ../cpp \ -+ -DLIBR_HOME="${R_HOME}" \ -+ -DCMAKE_C_COMPILER="${CC}" \ -+ -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ -+ -DCMAKE_CXX_COMPILER="${CXX}" \ -+ -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ -+ -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \ -+ -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \ -+ -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \ - "$@" - cd .. - ---- rstudio-1.1.463-orig/src/tools/xcode-ubsan-build 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/tools/xcode-ubsan-build 2018-11-17 21:41:02.715507871 +1100 -@@ -15,13 +15,13 @@ - # sanitizers released with newer versions of clang) - mkdir -p "${BUILD_DIR}" - cd "${BUILD_DIR}" --cmake ../cpp -GXcode \ -- -DLIBR_HOME="${R_HOME}" \ -- -DLIBR_INCLUDE_DIRS="${R_INCL}" \ -- -DLIBR_DOC_DIR="${R_DOCS}" \ -- -DRSTUDIO_USE_LIBCXX="Yes" \ -- -DRSTUDIO_USE_SYSTEM_BOOST="Yes" \ -- -DRSTUDIO_BOOST_VERSION="1.56.0" \ -+cmake ../cpp -GXcode \ -+ -DLIBR_HOME="${R_HOME}" \ -+ -DLIBR_INCLUDE_DIRS="${R_INCL}" \ -+ -DLIBR_DOC_DIR="${R_DOCS}" \ -+ -DRSTUDIO_USE_LIBCXX="Yes" \ -+ -DRSTUDIO_USE_SYSTEM_BOOST="Yes" \ -+ -DRSTUDIO_BOOST_REQUESTED_VERSION="1.56.0" \ - "$@" - cmake ../cpp -DLIBR_LIBRARIES="${R_LIBS}/libR.dylib" - cd .. diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch deleted file mode 100644 index 320b823355a3..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.70.0.patch +++ /dev/null @@ -1,46 +0,0 @@ ---- rstudio-1.1.463-orig/src/cpp/ext/websocketpp/transport/asio/connection.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/ext/websocketpp/transport/asio/connection.hpp 2019-03-30 20:14:40.634057634 +1100 -@@ -296,7 +296,11 @@ - */ - timer_ptr set_timer(long duration, timer_handler callback) { - timer_ptr new_timer = lib::make_shared<boost::asio::deadline_timer>( -+#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000 -+ *m_io_service, -+#else - lib::ref(*m_io_service), -+#endif - boost::posix_time::milliseconds(duration) - ); - ---- rstudio-1.1.463-orig/src/cpp/ext/websocketpp/transport/asio/endpoint.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/ext/websocketpp/transport/asio/endpoint.hpp 2019-03-30 20:14:36.319021594 +1100 -@@ -184,7 +184,12 @@ - m_io_service = ptr; - m_external_io_service = true; - m_acceptor = lib::make_shared<boost::asio::ip::tcp::acceptor>( -- lib::ref(*m_io_service)); -+#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000 -+ *m_io_service -+#else -+ lib::ref(*m_io_service) -+#endif -+ ); - - m_state = READY; - ec = lib::error_code(); ---- rstudio-1.1.463-orig/src/cpp/ext/websocketpp/transport/asio/security/none.hpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/ext/websocketpp/transport/asio/security/none.hpp 2019-03-30 20:15:22.353406097 +1100 -@@ -167,7 +167,12 @@ - } - - m_socket = lib::make_shared<boost::asio::ip::tcp::socket>( -- lib::ref(*service)); -+#if defined(BOOST_VERSION) && BOOST_VERSION >= 107000 -+ *service -+#else -+ lib::ref(*service) -+#endif -+ ); - - m_state = READY; - diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch deleted file mode 100644 index 914cd942e8f4..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- rstudio-1.1.463-orig/src/cpp/server/ServerSecureKeyFile.cpp 2018-10-25 09:42:55.000000000 +1100 -+++ rstudio-1.1.463/src/cpp/server/ServerSecureKeyFile.cpp 2018-11-17 22:17:18.110012955 +1100 -@@ -79,8 +79,8 @@ - return error; - - // change mode it so it is only readable and writeable by this user -- if (changeFileMode(secureKeyPath, -- core::system::UserReadWriteMode) < 0) -+ if (!!changeFileMode(secureKeyPath, -+ core::system::UserReadWriteMode)) - { - return systemError(errno, ERROR_LOCATION); - } diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch deleted file mode 100644 index b2c4d2392f6a..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-boost-1.72-filesystem.patch +++ /dev/null @@ -1,31 +0,0 @@ -From a11d0454e5fe9c50005a03b9d9de84355df5c7fd Mon Sep 17 00:00:00 2001 -From: Kevin Ushey <kevinushey@gmail.com> -Date: Fri, 15 Nov 2019 14:54:02 -0800 -Subject: [PATCH] avoid use of deprecated APIs - ---- - src/cpp/core/FilePath.cpp | 4 +--- - 1 file changed, 1 insertion(+), 3 deletions(-) - -diff --git a/src/cpp/shared_core/FilePath.cpp b/src/cpp/shared_core/FilePath.cpp -index 088366a9d6..495289e7fc 100644 ---- a/src/cpp/core/FilePath.cpp -+++ b/src/cpp/core/FilePath.cpp -@@ -22,8 +22,6 @@ - #include <windows.h> - #endif - --#define BOOST_FILESYSTEM_NO_DEPRECATED -- - #define BOOST_NO_CXX11_SCOPED_ENUMS - #include <boost/filesystem.hpp> - #undef BOOST_NO_CXX11_SCOPED_ENUMS -@@ -1032,7 +1030,7 @@ - { - // NOTE: The path gets round-tripped through toString/fromString, would - // be nice to have a direct constructor -- if (!iterationFunction(itr.level(), -+ if (!iterationFunction(itr.depth(), - FilePath(BOOST_FS_PATH2STR(itr->path())))) - { - // end the iteration if requested diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch deleted file mode 100644 index e38f5e0c4448..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-fix-ptr-int-compare.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- rstudio-1.2.1335-orig/src/cpp/server_core/SecureKeyFile.cpp 2019-03-28 16:08:20.000000000 +1100 -+++ rstudio-1.2.1335/src/cpp/server_core/SecureKeyFile.cpp 2019-04-09 20:47:57.943317208 +1000 -@@ -68,8 +68,8 @@ - return error; - - // change mode it so it is only readable and writeable by this user -- if (changeFileMode(secureKeyPath, -- core::system::UserReadWriteMode) < 0) -+ if (!!changeFileMode(secureKeyPath, -+ core::system::UserReadWriteMode)) - { - return systemError(errno, ERROR_LOCATION); - } diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch deleted file mode 100644 index e2fe83867bcd..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-pandoc.patch +++ /dev/null @@ -1,32 +0,0 @@ ---- rstudio-1.2.1335-orig/src/cpp/session/CMakeLists.txt 2019-03-28 16:08:20.000000000 +1100 -+++ rstudio-1.2.1335/src/cpp/session/CMakeLists.txt 2019-04-09 17:22:59.210201624 +1000 -@@ -25,9 +25,6 @@ - if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-26") - message(FATAL_ERROR "Mathjax 2.6 not found (re-run install-dependencies script to install)") - endif() --if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc") -- message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)") --endif() - - # we often install embedded versions of these packages but don't do so currently - -@@ -479,19 +476,6 @@ - install(DIRECTORY "resources/connections" - DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources) - --# install pandoc --if(WIN32) -- set(PANDOC_VERSION "2.6" CACHE INTERNAL "Pandoc version") --else() -- set(PANDOC_VERSION "2.3.1" CACHE INTERNAL "Pandoc version") --endif() -- --set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/${PANDOC_VERSION}") --file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*") --install(FILES ${PANDOC_FILES} -- PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE -- DESTINATION ${RSTUDIO_INSTALL_BIN}/pandoc) -- - # install rmarkdown package - # file(GLOB RMARKDOWN_PACKAGE "${RSTUDIO_DEPENDENCIES_DIR}/common/rmarkdown*.tar.gz") - # install(FILES ${RMARKDOWN_PACKAGE} diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch b/sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch deleted file mode 100644 index e72df553eeb6..000000000000 --- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-prefs.patch +++ /dev/null @@ -1,53 +0,0 @@ ---- rstudio-1.2.1335-orig/src/gwt/build.xml 2019-03-28 16:08:20.000000000 +1100 -+++ rstudio-1.2.1335/src/gwt/build.xml 2019-04-09 16:44:15.089471934 +1000 -@@ -34,6 +34,7 @@ - <property name="gwt.extra.args" value=""/> - <property name="gwt.main.module" value="org.rstudio.studio.RStudio"/> - <property name="ace.bin" value="${src.dir}/org/rstudio/studio/client/workbench/views/source/editors/text/ace"/> -+ <property environment="env"/> - - <path id="project.class.path"> - <pathelement location="${build.dir}"/> -@@ -112,8 +113,10 @@ - <pathelement location="${src.dir}"/> - <path refid="project.class.path"/> - </classpath> -+ <jvmarg value="-Duser.home=${env.T}"/> - <!-- add jvmarg -Xss16M or similar if you see a StackOverflowError --> - <jvmarg value="-Xmx1536M"/> -+ <jvmarg value="-Djava.util.prefs.userRoot=${env.T}"/> - <arg value="-war"/> - <arg value="${www.dir}"/> - <arg value="-localWorkers"/> -@@ -154,6 +157,7 @@ - <pathelement location="${src.dir}"/> - <path refid="project.class.path"/> - </classpath> -+ <jvmarg value="-Duser.home=${env.T}"/> - <jvmarg value="-Xmx2048M"/> - <arg value="-style"/> - <arg value="PRETTY"/> -@@ -176,6 +180,7 @@ - <pathelement location="src"/> - <path refid="project.class.path"/> - </classpath> -+ <jvmarg value="-Duser.home=${env.T}"/> - <jvmarg value="-Xmx2048M"/> - <arg value="-style"/> - <arg value="PRETTY"/> -@@ -202,6 +207,7 @@ - <pathelement location="src"/> - <path refid="project.class.path"/> - </classpath> -+ <jvmarg value="-Duser.home=${env.T}"/> - <jvmarg value="-Xmx2048M"/> - <arg value="-src"/> - <arg value = "src"/> -@@ -237,6 +243,7 @@ - <pathelement location="${test.dir}"/> - <pathelement location="${src.dir}"/> - </classpath> -+ <jvmarg value="-Duser.home=${env.T}"/> - <classpath refid="project.class.path"/> - <classpath refid="unittest.class.path"/> - <arg value="org.rstudio.studio.client.RStudioUnitTestSuite"/> diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.5042-R-4.0.0.patch b/sci-mathematics/rstudio/files/rstudio-1.2.5042-R-4.0.0.patch new file mode 100644 index 000000000000..87ec83a7d4af --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-1.2.5042-R-4.0.0.patch @@ -0,0 +1,106 @@ +From 71b1a935762efd24a79de193662450de5a89f67e Mon Sep 17 00:00:00 2001 +From: Jonathan McPherson <jonathan@rstudio.com> +Date: Tue, 14 Jan 2020 12:53:20 -0800 +Subject: [PATCH] use R_NoSave over R_Slave for R 4.0+ + +--- + src/cpp/r/CMakeLists.txt | 12 ++++++++++++ + src/cpp/r/config.h.in | 8 +++++++- + src/cpp/r/session/REmbeddedPosix.cpp | 20 ++++++++++++++------ + 3 files changed, 33 insertions(+), 7 deletions(-) + +diff --git a/src/cpp/r/CMakeLists.txt b/src/cpp/r/CMakeLists.txt +index 6984ae309c..29784b8b67 100644 +--- a/src/cpp/r/CMakeLists.txt ++++ b/src/cpp/r/CMakeLists.txt +@@ -15,6 +15,18 @@ + + project (R) + ++# find the version of R in play ++find_package(LibR REQUIRED) ++execute_process( ++ COMMAND "${LIBR_EXECUTABLE}" "--vanilla" "--slave" "-e" "cat(as.character(getRversion()))" ++ OUTPUT_VARIABLE LIBR_VERSION) ++ ++# parse and save the R version to a variable ++string(REPLACE "." ";" R_VERSION_LIST "${LIBR_VERSION}") ++list(GET R_VERSION_LIST 0 R_VERSION_MAJOR) ++list(GET R_VERSION_LIST 1 R_VERSION_MINOR) ++list(GET R_VERSION_LIST 2 R_VERSION_PATCH) ++ + # include files + file(GLOB_RECURSE R_HEADER_FILES "*.h*") + +diff --git a/src/cpp/r/config.h.in b/src/cpp/r/config.h.in +index 6ba67c8e09..00bc8b6191 100644 +--- a/src/cpp/r/config.h.in ++++ b/src/cpp/r/config.h.in +@@ -1,7 +1,7 @@ + /* + * config.h.in + * +- * Copyright (C) 2009-12 by RStudio, Inc. ++ * Copyright (C) 2009-20 by RStudio, Inc. + * + * Unless you have received this program directly from RStudio pursuant + * to the terms of a commercial license agreement with RStudio, then +@@ -16,4 +16,10 @@ + + #cmakedefine PANGO_CAIRO_FOUND + ++// Important: These variables represent the version of R found during ++// compile/link time, NOT the version of R present at runtime. ++#define R_VERSION_MAJOR ${R_VERSION_MAJOR} ++#define R_VERSION_MINOR ${R_VERSION_MINOR} ++#define R_VERSION_PATCH ${R_VERSION_PATCH} ++ + +diff --git a/src/cpp/r/session/REmbeddedPosix.cpp b/src/cpp/r/session/REmbeddedPosix.cpp +index ac71b94522..73e2e2ce7f 100644 +--- a/src/cpp/r/session/REmbeddedPosix.cpp ++++ b/src/cpp/r/session/REmbeddedPosix.cpp +@@ -1,7 +1,7 @@ + /* + * REmbeddedPosix.cpp + * +- * Copyright (C) 2009-12 by RStudio, Inc. ++ * Copyright (C) 2009-20 by RStudio, Inc. + * + * Unless you have received this program directly from RStudio pursuant + * to the terms of a commercial license agreement with RStudio, then +@@ -38,6 +38,8 @@ extern "C" void (*ptr_R_ProcessEvents)(void); + extern "C" typedef void (*ptr_QuartzCocoa_SetupEventLoop)(int, unsigned long); + #endif + ++#include "config.h" ++ + extern int R_running_as_main_program; // from unix/system.c + + using namespace rstudio::core; +@@ -103,14 +105,20 @@ void runEmbeddedR(const core::FilePath& /*rHome*/, // ignored on posix + // + structRstart rp; + Rstart Rp = &rp; +- R_DefParams(Rp) ; +- Rp->R_Slave = FALSE ; ++ R_DefParams(Rp); ++#if R_VERSION_MAJOR > 3 ++ // R 4.0 and above use --no-echo to suppress output ++ Rp->R_NoEcho = FALSE; ++#else ++ // R 3.x and below use --slave ++ Rp->R_Slave = FALSE; ++#endif + Rp->R_Quiet = quiet ? TRUE : FALSE; +- Rp->R_Interactive = TRUE ; +- Rp->SaveAction = defaultSaveAction ; ++ Rp->R_Interactive = TRUE; ++ Rp->SaveAction = defaultSaveAction; + Rp->RestoreAction = SA_NORESTORE; // handled within initialize() + Rp->LoadInitFile = loadInitFile ? TRUE : FALSE; +- R_SetParams(Rp) ; ++ R_SetParams(Rp); + + // redirect console + R_Interactive = TRUE; // should have also been set by call to Rf_initialize_R diff --git a/sci-mathematics/rstudio/files/rstudio-1.3.959-R-4.0.0.patch b/sci-mathematics/rstudio/files/rstudio-1.3.959-R-4.0.0.patch new file mode 100644 index 000000000000..dc35d0ce0083 --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-1.3.959-R-4.0.0.patch @@ -0,0 +1,106 @@ +From 71b1a935762efd24a79de193662450de5a89f67e Mon Sep 17 00:00:00 2001 +From: Jonathan McPherson <jonathan@rstudio.com> +Date: Tue, 14 Jan 2020 12:53:20 -0800 +Subject: [PATCH] use R_NoSave over R_Slave for R 4.0+ + +--- + src/cpp/r/CMakeLists.txt | 12 ++++++++++++ + src/cpp/r/config.h.in | 8 +++++++- + src/cpp/r/session/REmbeddedPosix.cpp | 20 ++++++++++++++------ + 3 files changed, 33 insertions(+), 7 deletions(-) + +diff --git a/src/cpp/r/CMakeLists.txt b/src/cpp/r/CMakeLists.txt +index 6984ae309c..29784b8b67 100644 +--- a/src/cpp/r/CMakeLists.txt ++++ b/src/cpp/r/CMakeLists.txt +@@ -15,6 +15,18 @@ + + project (R) + ++# find the version of R in play ++find_package(LibR REQUIRED) ++execute_process( ++ COMMAND "${LIBR_EXECUTABLE}" "--vanilla" "--slave" "-e" "cat(as.character(getRversion()))" ++ OUTPUT_VARIABLE LIBR_VERSION) ++ ++# parse and save the R version to a variable ++string(REPLACE "." ";" R_VERSION_LIST "${LIBR_VERSION}") ++list(GET R_VERSION_LIST 0 R_VERSION_MAJOR) ++list(GET R_VERSION_LIST 1 R_VERSION_MINOR) ++list(GET R_VERSION_LIST 2 R_VERSION_PATCH) ++ + # include files + file(GLOB_RECURSE R_HEADER_FILES "*.h*") + +diff --git a/src/cpp/r/config.h.in b/src/cpp/r/config.h.in +index 6ba67c8e09..00bc8b6191 100644 +--- a/src/cpp/r/config.h.in ++++ b/src/cpp/r/config.h.in +@@ -1,7 +1,7 @@ + /* + * config.h.in + * +- * Copyright (C) 2009-12 by RStudio, PBC ++ * Copyright (C) 2009-20 by RStudio, Inc. + * + * Unless you have received this program directly from RStudio pursuant + * to the terms of a commercial license agreement with RStudio, then +@@ -16,4 +16,10 @@ + + #cmakedefine PANGO_CAIRO_FOUND + ++// Important: These variables represent the version of R found during ++// compile/link time, NOT the version of R present at runtime. ++#define R_VERSION_MAJOR ${R_VERSION_MAJOR} ++#define R_VERSION_MINOR ${R_VERSION_MINOR} ++#define R_VERSION_PATCH ${R_VERSION_PATCH} ++ + +diff --git a/src/cpp/r/session/REmbeddedPosix.cpp b/src/cpp/r/session/REmbeddedPosix.cpp +index ac71b94522..73e2e2ce7f 100644 +--- a/src/cpp/r/session/REmbeddedPosix.cpp ++++ b/src/cpp/r/session/REmbeddedPosix.cpp +@@ -1,7 +1,7 @@ + /* + * REmbeddedPosix.cpp + * +- * Copyright (C) 2009-19 by RStudio, PBC ++ * Copyright (C) 2009-20 by RStudio, Inc. + * + * Unless you have received this program directly from RStudio pursuant + * to the terms of a commercial license agreement with RStudio, then +@@ -38,6 +38,8 @@ extern "C" void (*ptr_R_ProcessEvents)(void); + extern "C" typedef void (*ptr_QuartzCocoa_SetupEventLoop)(int, unsigned long); + #endif + ++#include "config.h" ++ + extern int R_running_as_main_program; // from unix/system.c + + using namespace rstudio::core; +@@ -103,14 +105,20 @@ void runEmbeddedR(const core::FilePath& /*rHome*/, // ignored on posix + // + structRstart rp; + Rstart Rp = &rp; +- R_DefParams(Rp) ; +- Rp->R_Slave = FALSE ; ++ R_DefParams(Rp); ++#if R_VERSION_MAJOR > 3 ++ // R 4.0 and above use --no-echo to suppress output ++ Rp->R_NoEcho = FALSE; ++#else ++ // R 3.x and below use --slave ++ Rp->R_Slave = FALSE; ++#endif + Rp->R_Quiet = quiet ? TRUE : FALSE; +- Rp->R_Interactive = TRUE ; +- Rp->SaveAction = defaultSaveAction ; ++ Rp->R_Interactive = TRUE; ++ Rp->SaveAction = defaultSaveAction; + Rp->RestoreAction = SA_NORESTORE; // handled within initialize() + Rp->LoadInitFile = loadInitFile ? TRUE : FALSE; +- R_SetParams(Rp) ; ++ R_SetParams(Rp); + + // redirect console + R_Interactive = TRUE; // should have also been set by call to Rf_initialize_R diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.453-core.patch b/sci-mathematics/rstudio/files/rstudio-1.3.959-core.patch index 641f7710167a..0f6af4ef7f12 100644 --- a/sci-mathematics/rstudio/files/rstudio-1.1.453-core.patch +++ b/sci-mathematics/rstudio/files/rstudio-1.3.959-core.patch @@ -1,6 +1,31 @@ ---- rstudio-1.1.453-orig/src/cpp/session/SessionClientInit.cpp 2018-05-15 04:19:30.000000000 +1000 -+++ rstudio-1.1.453/src/cpp/session/SessionClientInit.cpp 2018-07-02 20:21:41.595654877 +1000 -@@ -105,7 +105,7 @@ +--- rstudio-1.3.959-orig/src/cpp/session/SessionClientInit.cpp 2020-05-19 04:11:10.000000000 +1000 ++++ rstudio-1.3.959/src/cpp/session/SessionClientInit.cpp 2020-05-24 17:21:56.960469575 +1000 +@@ -91,13 +91,13 @@ + boost::shared_ptr<http::Cookie>* pCookie) + { + // extract the base URL +- json::JsonRpcRequest request; ++ core::json::JsonRpcRequest request; + Error error = parseJsonRpcRequest(ptrConnection->request().body(), &request); + if (error) + return error; + std::string baseURL; + +- error = json::readParams(request.params, &baseURL); ++ error = core::json::readParams(request.params, &baseURL); + if (error) + return error; + +@@ -143,7 +143,7 @@ + if (options.programMode() == kSessionProgramModeServer && + !core::http::validateCSRFHeaders(ptrConnection->request())) + { +- ptrConnection->sendJsonRpcError(Error(json::errc::Unauthorized, ERROR_LOCATION)); ++ ptrConnection->sendJsonRpcError(Error(core::json::errc::Unauthorized, ERROR_LOCATION)); + return; + } + +@@ -173,12 +173,12 @@ } // prepare session info @@ -8,8 +33,14 @@ + core::json::Object sessionInfo ; sessionInfo["clientId"] = clientId; sessionInfo["mode"] = options.programMode(); - -@@ -119,8 +119,8 @@ + + // build initialization options for client +- json::Object initOptions; ++ core::json::Object initOptions; + initOptions["restore_workspace"] = options.rRestoreWorkspace(); + initOptions["run_rprofile"] = options.rRunRprofile(); + sessionInfo["init_options"] = initOptions; +@@ -194,8 +194,8 @@ } // temp dir @@ -19,8 +50,8 @@ + core::Error error = tempDir.ensureDirectory(); if (error) LOG_ERROR(error); - sessionInfo["temp_dir"] = tempDir.absolutePath(); -@@ -132,12 +132,12 @@ + sessionInfo["temp_dir"] = tempDir.getAbsolutePath(); +@@ -213,12 +213,12 @@ sessionInfo["prompt"] = rstudio::r::options::getOption<std::string>("prompt"); // client state @@ -35,7 +66,7 @@ error = modules::source::clientInitDocuments(&jsonDocs); if (error) LOG_ERROR(error); -@@ -159,7 +159,7 @@ +@@ -243,7 +243,7 @@ if (resumed) { // console actions @@ -44,7 +75,7 @@ consoleActions.asJson(&actionsObject); sessionInfo["console_actions"] = actionsObject; } -@@ -211,12 +211,12 @@ +@@ -310,12 +310,12 @@ } else { @@ -60,24 +91,24 @@ + sessionInfo["project_user_data_directory"] = core::json::Value(); } - sessionInfo["system_encoding"] = std::string(::locale2charset(NULL)); -@@ -253,20 +253,20 @@ + sessionInfo["system_encoding"] = std::string(::locale2charset(nullptr)); +@@ -352,20 +352,20 @@ sessionInfo["build_tools_bookdown_website"] = module_context::isBookdownWebsite(); - FilePath buildTargetDir = projects::projectContext().buildTargetPath(); + core::FilePath buildTargetDir = projects::projectContext().buildTargetPath(); - if (!buildTargetDir.empty()) + if (!buildTargetDir.isEmpty()) { sessionInfo["build_target_dir"] = module_context::createAliasedPath( buildTargetDir); - sessionInfo["has_pkg_src"] = (type == r_util::kBuildTypePackage) && + sessionInfo["has_pkg_src"] = (type == core::r_util::kBuildTypePackage) && - buildTargetDir.childPath("src").exists(); + buildTargetDir.completeChildPath("src").exists(); sessionInfo["has_pkg_vig"] = - (type == r_util::kBuildTypePackage) && + (type == core::r_util::kBuildTypePackage) && - buildTargetDir.childPath("vignettes").exists(); + buildTargetDir.completeChildPath("vignettes").exists(); } else { @@ -86,7 +117,7 @@ sessionInfo["has_pkg_src"] = false; sessionInfo["has_pkg_vig"] = false; } -@@ -274,9 +274,9 @@ +@@ -373,9 +373,9 @@ } else { @@ -98,7 +129,7 @@ sessionInfo["has_pkg_src"] = false; sessionInfo["has_pkg_vig"] = false; } -@@ -285,7 +285,7 @@ +@@ -384,7 +384,7 @@ sessionInfo["presentation_commands"] = options.allowPresentationCommands(); sessionInfo["tutorial_api_available"] = false; @@ -107,7 +138,7 @@ sessionInfo["build_state"] = modules::build::buildStateAsJson(); sessionInfo["devtools_installed"] = module_context::isMinimumDevtoolsInstalled(); -@@ -296,7 +296,7 @@ +@@ -395,7 +395,7 @@ // console history -- we do this at the end because // restoreBuildRestartContext may have reset it @@ -116,13 +147,14 @@ rstudio::r::session::consoleHistory().asJson(&historyArray); sessionInfo["console_history"] = historyArray; sessionInfo["console_history_capacity"] = -@@ -364,13 +364,13 @@ +@@ -470,14 +470,14 @@ sessionInfo["multi_session"] = options.multiSession(); - json::Object rVersionsJson; + core::json::Object rVersionsJson; rVersionsJson["r_version"] = module_context::rVersion(); + rVersionsJson["r_version_label"] = module_context::rVersionLabel(); rVersionsJson["r_home_dir"] = module_context::rHomeDir(); sessionInfo["r_versions_info"] = rVersionsJson; @@ -132,12 +164,21 @@ sessionInfo["r_addins"] = modules::r_addins::addinRegistryAsJson(); sessionInfo["package_provided_extensions"] = modules::ppe::indexer().getPayload(); -@@ -394,7 +394,7 @@ +@@ -501,7 +501,7 @@ - // send response (we always set kEventsPending to false so that the client + sessionInfo["launcher_jobs_enabled"] = modules::overlay::launcherJobsFeatureDisplayed(); + +- json::Object packageDependencies; ++ core::json::Object packageDependencies; + error = modules::dependency_list::getDependencyList(&packageDependencies); + if (error) + LOG_ERROR(error); +@@ -529,7 +529,7 @@ + + // create response (we always set kEventsPending to false so that the client // won't poll for events until it is ready) -- json::JsonRpcResponse jsonRpcResponse ; -+ core::json::JsonRpcResponse jsonRpcResponse ; +- json::JsonRpcResponse jsonRpcResponse; ++ core::json::JsonRpcResponse jsonRpcResponse; jsonRpcResponse.setField(kEventsPending, "false"); - jsonRpcResponse.setResult(sessionInfo) ; - ptrConnection->sendJsonRpcResponse(jsonRpcResponse); + jsonRpcResponse.setResult(sessionInfo); + diff --git a/sci-mathematics/rstudio/files/rstudio-1.3.959-pandoc-mathjax.patch b/sci-mathematics/rstudio/files/rstudio-1.3.959-pandoc-mathjax.patch new file mode 100644 index 000000000000..d8718dda9b18 --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-1.3.959-pandoc-mathjax.patch @@ -0,0 +1,42 @@ +--- rstudio-1.3.959-orig/src/cpp/session/CMakeLists.txt 2020-05-19 04:11:10.000000000 +1000 ++++ rstudio-1.3.959/src/cpp/session/CMakeLists.txt 2020-05-24 18:54:40.444955162 +1000 +@@ -22,12 +22,6 @@ + if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/dictionaries") + message(FATAL_ERROR "Dictionaries not found (re-run install-dependencies script to install)") + endif() +-if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-27") +- message(FATAL_ERROR "Mathjax 2.7 not found (re-run install-dependencies script to install)") +-endif() +-if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc") +- message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)") +-endif() + + # verify embedded packages are available + foreach(PKG ${RSTUDIO_EMBEDDED_PACKAGES}) +@@ -500,10 +494,6 @@ + install(DIRECTORY "${RSTUDIO_DEPENDENCIES_DIR}/common/dictionaries" + DESTINATION "${RSTUDIO_INSTALL_SUPPORTING}/resources") + +- # install mathjax for local html preview +- install(DIRECTORY "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-27" +- DESTINATION "${RSTUDIO_INSTALL_SUPPORTING}/resources") +- + # icons for database connections + install(DIRECTORY "resources/connections" + DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources) +@@ -516,15 +506,6 @@ + install(DIRECTORY "resources/dependencies" + DESTINATION ${RSTUDIO_INSTALL_SUPPORTING}/resources) + +- # install pandoc +- set(PANDOC_VERSION "2.7.3" CACHE INTERNAL "Pandoc version") +- +- set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/${PANDOC_VERSION}") +- file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*") +- install(FILES ${PANDOC_FILES} +- PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE +- DESTINATION ${RSTUDIO_INSTALL_BIN}/pandoc) +- + # install embedded packages + foreach(PKG ${RSTUDIO_EMBEDDED_PACKAGES}) + file(GLOB PKG_FILES "${RSTUDIO_DEPENDENCIES_DIR}/common/${PKG}*.tar.gz") diff --git a/sci-mathematics/rstudio/files/rstudio-1.2.1335-paths.patch b/sci-mathematics/rstudio/files/rstudio-1.3.959-paths.patch index ba66ef9f0ea1..175d52f7149a 100644 --- a/sci-mathematics/rstudio/files/rstudio-1.2.1335-paths.patch +++ b/sci-mathematics/rstudio/files/rstudio-1.3.959-paths.patch @@ -1,17 +1,17 @@ ---- rstudio-1.2.1335-orig/CMakeGlobals.txt 2019-03-28 16:08:20.000000000 +1100 -+++ rstudio-1.2.1335/CMakeGlobals.txt 2019-04-09 17:10:07.680657631 +1000 -@@ -161,7 +161,7 @@ - set(RSTUDIO_INSTALL_SUPPORTING RStudio.app/Contents/Resources) - else() - set(RSTUDIO_INSTALL_BIN bin) +--- rstudio-1.3.959-orig/CMakeGlobals.txt 2020-05-19 04:11:10.000000000 +1000 ++++ rstudio-1.3.959/CMakeGlobals.txt 2020-05-25 19:30:10.711859714 +1000 +@@ -181,7 +181,7 @@ + else() + set(RSTUDIO_INSTALL_BIN bin) + endif() - set(RSTUDIO_INSTALL_SUPPORTING .) + set(RSTUDIO_INSTALL_SUPPORTING ${DISTRO_SHARE}) endif() # if the install prefix is /usr/local then tweak as appropriate ---- rstudio-1.2.1335-orig/src/cpp/server/CMakeLists.txt 2019-03-28 16:08:20.000000000 +1100 -+++ rstudio-1.2.1335/src/cpp/server/CMakeLists.txt 2019-04-09 16:54:34.740739744 +1000 -@@ -194,7 +194,7 @@ +--- rstudio-1.3.959-orig/src/cpp/server/CMakeLists.txt 2020-05-19 04:11:10.000000000 +1000 ++++ rstudio-1.3.959/src/cpp/server/CMakeLists.txt 2020-05-25 19:30:10.711859714 +1000 +@@ -190,7 +190,7 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}.in ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT}) install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_DEBIAN_SCRIPT} @@ -20,7 +20,7 @@ # install configured redhat init.d script set(RSERVER_INITD_REDHAT_DIR "extras/init.d/redhat") -@@ -202,7 +202,7 @@ +@@ -198,7 +198,7 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}.in ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT}) install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_REDHAT_SCRIPT} @@ -29,7 +29,7 @@ # install configured suse init.d script set(RSERVER_INITD_SUSE_DIR "extras/init.d/suse") -@@ -210,13 +210,13 @@ +@@ -206,13 +206,13 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_INITD_SUSE_SCRIPT}.in ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT}) install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_INITD_SUSE_SCRIPT} @@ -45,7 +45,7 @@ # install configured upstart profile set(RSERVER_UPSTART_DIR "extras/upstart") -@@ -224,12 +224,12 @@ +@@ -220,12 +220,12 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${RSERVER_UPSTART_PROFILE}.in ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE}) install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${RSERVER_UPSTART_PROFILE} @@ -60,22 +60,22 @@ # install configured systemd profile set(RSERVER_SYSTEMD_DIR "extras/systemd") ---- rstudio-1.2.1335-orig/src/cpp/server/ServerOptions.cpp 2019-03-28 16:08:20.000000000 +1100 -+++ rstudio-1.2.1335/src/cpp/server/ServerOptions.cpp 2019-04-09 16:54:34.740739744 +1000 -@@ -389,8 +389,8 @@ +--- rstudio-1.3.959-orig/src/cpp/server/ServerOptions.cpp 2020-05-19 04:11:10.000000000 +1000 ++++ rstudio-1.3.959/src/cpp/server/ServerOptions.cpp 2020-05-25 19:34:19.377675880 +1000 +@@ -442,8 +442,8 @@ // convert relative paths by completing from the system installation // path (this allows us to be relocatable) - resolvePath(resourcePath, &wwwLocalPath_); - resolvePath(resourcePath, &wwwSymbolMapsPath_); -+ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwLocalPath_); -+ resolvePath(resourcePath.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_); ++ resolvePath(resourcePath.completeChildPath(DISTRO_SHARE), &wwwLocalPath_); ++ resolvePath(resourcePath.completeChildPath(DISTRO_SHARE), &wwwSymbolMapsPath_); resolvePath(binaryPath, &authPamHelperPath_); resolvePath(binaryPath, &rsessionPath_); resolvePath(binaryPath, &rldpathPath_); ---- rstudio-1.2.1335-orig/src/cpp/session/SessionOptions.cpp 2019-03-28 16:08:20.000000000 +1100 -+++ rstudio-1.2.1335/src/cpp/session/SessionOptions.cpp 2019-04-09 17:17:06.035206050 +1000 -@@ -53,7 +53,7 @@ +--- rstudio-1.3.959-orig/src/cpp/session/SessionOptions.cpp 2020-05-19 04:11:10.000000000 +1000 ++++ rstudio-1.3.959/src/cpp/session/SessionOptions.cpp 2020-05-25 19:33:58.318606745 +1000 +@@ -52,7 +52,7 @@ namespace session { namespace { @@ -84,7 +84,7 @@ const char* const kDefaultPostbackPath = "bin/postback/rpostback"; const char* const kDefaultRsclangPath = "bin/rsclang"; -@@ -569,14 +569,14 @@ +@@ -586,14 +586,14 @@ } // convert relative paths by completing from the app resource path @@ -96,23 +96,23 @@ - resolvePath(resourcePath_, &modulesRSourcePath_); - resolvePath(resourcePath_, &sessionLibraryPath_); - resolvePath(resourcePath_, &sessionPackageArchivesPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &rResourcesPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &agreementFilePath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwLocalPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &wwwSymbolMapsPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &coreRSourcePath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &modulesRSourcePath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionLibraryPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &sessionPackageArchivesPath_); ++ resolvePath(resourcePath_.completeChildPath(DISTRO_SHARE), &rResourcesPath_); ++ resolvePath(resourcePath_.completeChildPath(DISTRO_SHARE), &agreementFilePath_); ++ resolvePath(resourcePath_.completeChildPath(DISTRO_SHARE), &wwwLocalPath_); ++ resolvePath(resourcePath_.completeChildPath(DISTRO_SHARE), &wwwSymbolMapsPath_); ++ resolvePath(resourcePath_.completeChildPath(DISTRO_SHARE), &coreRSourcePath_); ++ resolvePath(resourcePath_.completeChildPath(DISTRO_SHARE), &modulesRSourcePath_); ++ resolvePath(resourcePath_.completeChildPath(DISTRO_SHARE), &sessionLibraryPath_); ++ resolvePath(resourcePath_.completeChildPath(DISTRO_SHARE), &sessionPackageArchivesPath_); resolvePostbackPath(resourcePath_, &rpostbackPath_); #ifdef _WIN32 resolvePath(resourcePath_, &consoleIoPath_); -@@ -601,7 +601,7 @@ +@@ -626,7 +626,7 @@ } - winptyPath_ = pty.complete(completion).absolutePath(); + winptyPath_ = pty.completePath(completion).getAbsolutePath(); #endif // _WIN32 - resolvePath(resourcePath_, &hunspellDictionariesPath_); -+ resolvePath(resourcePath_.childPath(DISTRO_SHARE), &hunspellDictionariesPath_); ++ resolvePath(resourcePath_.completeChildPath(DISTRO_SHARE), &hunspellDictionariesPath_); resolvePath(resourcePath_, &mathjaxPath_); resolvePath(resourcePath_, &libclangHeadersPath_); resolvePandocPath(resourcePath_, &pandocPath_); diff --git a/sci-mathematics/rstudio/files/rstudio-1.3.959-prefs.patch b/sci-mathematics/rstudio/files/rstudio-1.3.959-prefs.patch new file mode 100644 index 000000000000..4f9613947694 --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-1.3.959-prefs.patch @@ -0,0 +1,68 @@ +--- rstudio-1.3.959-orig/src/gwt/build.xml 2020-05-19 04:11:10.000000000 +1000 ++++ rstudio-1.3.959/src/gwt/build.xml 2020-05-25 17:38:28.911881424 +1000 +@@ -28,19 +28,37 @@ + classname="com.google.javascript.jscomp.ant.CompileTask" + classpath="${tools.dir}/compiler/compiler.jar"/> + ++ <!-- Configure path to aopalliance --> ++ <property name="aopalliance.sdk" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/aopalliance-1/lib"/> ++ ++ <!-- Configure path to javax-inject --> ++ <property name="javax.inject" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/javax-inject/lib"/> ++ ++ <!-- Configure path to validation-api --> ++ <property name="validation.api" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/validation-api-1.0/lib"/> ++ <property name="validation.api.sources" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/validation-api-1.0/sources"/> ++ + <!-- Configure path to GWT SDK --> + <property name="gwt.sdk" value="${lib.dir}/gwt/gwt-rstudio-1.3"/> ++ <!-- Configure path to Google Gin --> ++ <property name="gin.sdk" value="@GENTOO_PORTAGE_EPREFIX@/usr/share/gin-2.1/lib"/> ++ + <property name="gwt.extra.args" value=""/> + <property name="gwt.main.module" value="org.rstudio.studio.RStudio"/> + <property name="ace.bin" value="${src.dir}/org/rstudio/studio/client/workbench/views/source/editors/text/ace"/> ++ <property environment="env"/> + + <!-- configure code server --> + <property name="bind.address" value="127.0.0.1"/> + + <path id="project.class.path"> + <pathelement location="${build.dir}"/> ++ <fileset dir="${aopalliance.sdk}" includes="*.jar"/> ++ <fileset dir="${javax.inject}" includes="*.jar"/> ++ <fileset dir="${validation.api}" includes="*.jar"/> ++ <fileset dir="${validation.api.sources}" includes="*.zip"/> + <fileset dir="${gwt.sdk}" includes="*.jar"/> +- <fileset dir="${lib.dir}/gin/2.1.2" includes="*.jar"/> ++ <fileset dir="${gin.sdk}" includes="*.jar"/> + </path> + + <path id="test.class.path"> +@@ -114,8 +132,10 @@ + <pathelement location="${src.dir}"/> + <path refid="project.class.path"/> + </classpath> ++ <jvmarg value="-Duser.home=${env.T}"/> + <!-- add jvmarg -Xss16M or similar if you see a StackOverflowError --> + <jvmarg value="-Xmx1536M"/> ++ <jvmarg value="-Djava.util.prefs.userRoot=${env.T}"/> + <arg value="-war"/> + <arg value="${www.dir}"/> + <arg value="-localWorkers"/> +@@ -168,6 +188,7 @@ + <pathelement location="${src.dir}"/> + <path refid="project.class.path"/> + </classpath> ++ <jvmarg value="-Duser.home=${env.T}"/> + <jvmarg value="-Xmx2048M"/> + <arg value="-style"/> + <arg value="PRETTY"/> +@@ -212,6 +233,7 @@ + <pathelement location="${test.dir}"/> + <pathelement location="${src.dir}"/> + </classpath> ++ <jvmarg value="-Duser.home=${env.T}"/> + <classpath refid="project.class.path"/> + <classpath refid="unittest.class.path"/> + <arg value="org.rstudio.studio.client.RStudioUnitTestSuite"/> diff --git a/sci-mathematics/rstudio/files/rstudio-0.99.473-qtsingleapplication.patch b/sci-mathematics/rstudio/files/rstudio-1.3.959-qtsingleapplication.patch index bf66bd236788..3ced4f9afa1c 100644 --- a/sci-mathematics/rstudio/files/rstudio-0.99.473-qtsingleapplication.patch +++ b/sci-mathematics/rstudio/files/rstudio-1.3.959-qtsingleapplication.patch @@ -1,20 +1,20 @@ ---- rstudio-0.99.473-orig/src/cpp/desktop/CMakeLists.txt 2015-08-12 09:58:43.000000000 +1000 -+++ rstudio-0.99.473/src/cpp/desktop/CMakeLists.txt 2015-08-30 23:16:11.396175587 +1000 -@@ -93,7 +93,12 @@ - find_package(Qt5DBus REQUIRED) - endif() +--- rstudio-1.3.959-orig/src/cpp/desktop/CMakeLists.txt 2020-05-19 04:11:10.000000000 +1000 ++++ rstudio-1.3.959/src/cpp/desktop/CMakeLists.txt 2020-05-24 17:15:47.039422975 +1000 +@@ -138,6 +138,13 @@ + get_filename_component(QT_LIBRARY_PATH "${QT_BIN_DIR}/../lib" ABSOLUTE CACHE) + get_filename_component(QT_INSTALL_PATH "${QT_BIN_DIR}/.." ABSOLUTE CACHE) -- +find_path(QTSINGLEAPPLIB_INCLUDE_DIR NAMES QtSingleApplication + PATH_SUFFIXES QtSolutions + PATHS + /usr/include/qt5) +find_library(QTSINGLEAPPLIB Qt5Solutions_SingleApplication-2.6 + libQt5Solutions_SingleApplication-2.6) - ++ # disable clang warnings for qt sources if(APPLE) -@@ -113,7 +118,6 @@ + add_definitions(-Wno-unused-private-field +@@ -156,7 +163,6 @@ set(MOC_DESKTOP_HEADER_FILES ${DESKTOP_HEADER_FILES}) list(REMOVE_ITEM MOC_DESKTOP_HEADER_FILES @@ -22,33 +22,33 @@ ${CMAKE_CURRENT_SOURCE_DIR}/DesktopDetectRHome.hpp ${CMAKE_CURRENT_SOURCE_DIR}/DesktopOptions.hpp ${CMAKE_CURRENT_SOURCE_DIR}/DesktopRVersion.hpp -@@ -175,8 +179,6 @@ - DesktopSubMenu.cpp +@@ -225,8 +231,6 @@ DesktopSynctex.cpp - DesktopNetworkAccessManager.cpp + DesktopJobLauncherOverlay.cpp + RemoteDesktopSessionLauncherOverlay.cpp - 3rdparty/qtsingleapplication/qtsingleapplication.cpp - 3rdparty/qtsingleapplication/qtlocalpeer.cpp ) if(WIN32) -@@ -219,6 +221,7 @@ - ${CORE_SOURCE_DIR}/include +@@ -283,6 +287,7 @@ + ${OPENSSL_INCLUDE_DIR} ${CMAKE_CURRENT_SOURCE_DIR} ${CMAKE_CURRENT_BINARY_DIR} + ${QTSINGLEAPPLIB_INCLUDE_DIR} + ${EXT_SOURCE_DIR} + ${SESSION_SOURCE_DIR}/include ${TESTS_INCLUDE_DIR} - ) - -@@ -332,6 +335,7 @@ - +@@ -386,6 +391,7 @@ # set link dependencies target_link_libraries(rstudio + ${RSTUDIO_QTMODULES} + ${QTSINGLEAPPLIB} ${QT_LIBRARIES} + ${Boost_LIBRARIES} rstudio-core - ${LINK_FLAGS} ---- rstudio-0.99.473-orig/src/cpp/desktop/DesktopPosixApplication.hpp 2015-08-12 09:58:43.000000000 +1000 -+++ rstudio-0.99.473/src/cpp/desktop/DesktopPosixApplication.hpp 2015-08-30 21:41:21.616934106 +1000 +--- rstudio-1.3.959-orig/src/cpp/desktop/DesktopPosixApplication.hpp 2020-05-19 04:11:10.000000000 +1000 ++++ rstudio-1.3.959/src/cpp/desktop/DesktopPosixApplication.hpp 2020-05-24 17:13:22.050016953 +1000 @@ -16,7 +16,7 @@ #ifndef DESKTOP_POSIX_APPLICATION_HPP #define DESKTOP_POSIX_APPLICATION_HPP @@ -56,5 +56,5 @@ -#include "3rdparty/qtsingleapplication/QtSingleApplication" +#include <QtSingleApplication> - namespace rstudio { - namespace desktop { + #include "DesktopApplicationLaunch.hpp" + diff --git a/sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild b/sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild deleted file mode 100644 index 8b60b2efe5b7..000000000000 --- a/sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild +++ /dev/null @@ -1,255 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils vcs-clean - -# TODO -# * package gin and gwt -# * use dict from tree, linguas -# * do src_test (use junit from tree?) - -# update from scripts in dependencies/common -# egrep '(GWT_SDK_VER=|GIN_VER=|SELENIUM_VER=|CHROMEDRIVER_VER=)' dependencies/common/install-gwt -GWT_VER=2.7.0 -GIN_VER=1.5 -SELENIUM_VER=2.37.0 -CHROMEDRIVER_VER=2.7 -# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc -PANDOC_VER=1.19.2.1 -# ls dependencies/common/*.tar.gz -PACKRAT_VER=0.98.1000 -RMARKDOWN_VER=0.98.1000 -SHINYAPPS_VER=0.98.1000 -RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0 - -DESCRIPTION="IDE for the R language" -HOMEPAGE=" - http://www.rstudio.org - https://github.com/rstudio/rstudio/" -SRC_URI=" - https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz - https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip - https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip - https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip - https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar - https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux - https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip - https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz - https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz - https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz - https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz -" - -LICENSE="AGPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="dedicated libressl server" - -QT_VER=5.4 -QT_SLOT=5 -RDEPEND=" - >=app-text/pandoc-${PANDOC_VER} - dev-haskell/pandoc-citeproc - >=dev-lang/R-2.11.1 - >=dev-libs/boost-1.63:= - >=dev-libs/mathjax-2.7.4 - sys-apps/util-linux - >=sys-devel/clang-3.5.0:* - sys-libs/zlib - >=virtual/jre-1.8:= - x11-libs/pango - !dedicated? ( - >=dev-qt/qtcore-${QT_VER}:${QT_SLOT} - >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT} - >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT} - >=dev-qt/qtgui-${QT_VER}:${QT_SLOT} - >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT} - >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT} - >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT} - >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT} - >=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)] - >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT} - >=dev-qt/qtsql-${QT_VER}:${QT_SLOT} - >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT} - >=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT} - >=dev-qt/qtwebkit-${QT_VER}:${QT_SLOT} - >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT} - >=dev-qt/qtxml-${QT_VER}:${QT_SLOT} - >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT} - server? ( sys-libs/pam ) - ) - dedicated? ( sys-libs/pam ) - !libressl? ( dev-libs/openssl:0= ) - libressl? ( dev-libs/libressl:0= )" -DEPEND="${RDEPEND} - app-arch/unzip - dev-java/ant-core - >=virtual/jdk-1.8:= - virtual/pkgconfig" -# test? ( dev-java/junit:4 ) - -PATCHES=( - "${FILESDIR}/${PN}-0.99.879-prefs.patch" - "${FILESDIR}/${PN}-1.0.44-paths.patch" - "${FILESDIR}/${PN}-1.1.357-clang-pandoc.patch" - "${FILESDIR}/${PN}-0.98.490-linker_flags.patch" - "${FILESDIR}/${PN}-0.99.473-qtsingleapplication.patch" - "${FILESDIR}/${PN}-1.0.44-systemd.patch" - "${FILESDIR}/${PN}-1.1.453-boost-1.67.0.patch" - "${FILESDIR}/${PN}-1.1.453-core.patch" - "${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p1.patch" - "${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p2.patch" - "${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p3.patch" - "${FILESDIR}/${PN}-1.1.463-fix-ptr-int-compare.patch" - "${FILESDIR}/${PN}-1.1.463-boost-1.70.0.patch" -) - -src_unpack() { - unpack ${P}.tar.gz gwt-${GWT_VER}.zip - cd "${S}" || die - mkdir -p src/gwt/lib/{gin,gwt} \ - dependencies/common/dictionaries \ - src/gwt/lib/selenium/${SELENIUM_VER} \ - src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die - mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die - unzip -qd src/gwt/lib/gin/${GIN_VER} \ - "${DISTDIR}"/gin-${GIN_VER}.zip || die - unzip -qd dependencies/common/dictionaries \ - "${DISTDIR}"/core-dictionaries.zip || die - unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \ - "${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die - cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \ - src/gwt/lib/selenium/${SELENIUM_VER}/ || die - cp "${DISTDIR}"/chromedriver-linux \ - src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die - cd dependencies/common || die - unpack packrat-${PACKRAT_VER}.tar.gz - unpack rmarkdown-${RMARKDOWN_VER}.tar.gz - unpack shinyapps-${SHINYAPPS_VER}.tar.gz - unpack rsconnect_${RSCONNECT_VER}.tar.gz - cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \ - . || die - cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \ - . || die - cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \ - . || die - cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \ - . || die -} - -src_prepare() { - cmake-utils_src_prepare - java-pkg-2_src_prepare - egit_clean - - # Enable CMake to install our .service file for systemd usage - mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die - cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die - - # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using - # this sed hack for now. ~RMH - sed -i \ - -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \ - src/cpp/server/ServerOptions.cpp \ - src/cpp/session/SessionOptions.cpp || die - - # use mathjax from system - ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die - - # make sure icons and mime stuff are with prefix - sed -i \ - -e "s:/usr:${EPREFIX}/usr:g" \ - CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die - - # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf - sed -e "s@/etc/rstudio/rserver.conf@${EROOT}/etc/conf.d/rstudio-server.conf@" \ - -i src/cpp/server/ServerOptions.cpp \ - || die - - # Set the rsession.conf file location for Gentoo prefix - sed -e "s@/etc/rstudio/rsession.conf@${EROOT}/etc/rstudio/rsession.conf@" \ - -i src/cpp/session/SessionOptions.cpp \ - || die - - # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module. - # It provides a library that has its version number appended to the end, - # which is difficult to handle in cmake, as find_library does not support - # searching for wildcard library names. So I find the library name from the - # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt. - rm -rf "${S}"/src/cpp/desktop/3rdparty || die - local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \ - $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \ - | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \ - -e 's@LIBS \*= -l@@') - sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \ - -i "${S}"/src/cpp/desktop/CMakeLists.txt \ - || die - - # The git commit for tag: git rev-list -n 1 v${PV} - sed -e 's@git ARGS rev-parse HEAD@echo ARGS 6871a99b32add885fe6fa3d50fe15f62346142e7@'\ - -i "${S}"/CMakeLists.txt \ - "${S}"/CMakeGlobals.txt \ - || die -} - -src_configure() { - export RSTUDIO_VERSION_MAJOR=$(ver_cut 1) - export RSTUDIO_VERSION_MINOR=$(ver_cut 2) - export RSTUDIO_VERSION_PATCH=$(ver_cut 3) - - local mycmakeargs=( - -DDISTRO_SHARE=share/${PN} - -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")" - -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")") - -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake - -DRSTUDIO_VERIFY_R_VERSION=FALSE - ) - - cmake-utils_src_configure -} - -src_compile() { - # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny - # P: /root/.oracle_jre_usage. - export ANT_OPTS="-Duser.home=${T}" - cmake-utils_src_compile -} - -src_install() { - export ANT_OPTS="-Duser.home=${T}" - cmake-utils_src_install - pax-mark m "${ED}/usr/bin/rstudio" - doconfd "${FILESDIR}"/rstudio-server.conf - dodir /etc/rstudio - insinto /etc/rstudio - doins "${FILESDIR}"/rsession.conf - dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf - if use dedicated || use server; then - dopamd src/cpp/server/extras/pam/rstudio - newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server - fi -} - -pkg_preinst() { - use dedicated || gnome2_icon_savelist - java-pkg-2_pkg_preinst -} - -pkg_postinst() { - use dedicated || { xdg_desktop_database_update - xdg_mimeinfo_database_update - gnome2_icon_cache_update ;} - - if use dedicated || use server; then - enewgroup rstudio-server - enewuser rstudio-server -1 -1 -1 rstudio-server - fi -} - -pkg_postrm() { - use dedicated || { xdg_desktop_database_update - xdg_mimeinfo_database_update - gnome2_icon_cache_update ;} -} diff --git a/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild b/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild index 88b8f9d905b8..09ff6e9c5162 100644 --- a/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild +++ b/sci-mathematics/rstudio/rstudio-1.2.5033.ebuild @@ -99,6 +99,8 @@ PATCHES=( "${FILESDIR}"/${PN}-1.2.1335-core.patch "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch + "${FILESDIR}"/${PN}-1.2.5042-boost-1.73.0.patch + "${FILESDIR}"/${PN}-1.2.5042-R-4.0.0.patch ) src_unpack() { @@ -208,7 +210,6 @@ src_install() { cmake-utils_src_install use dedicated || pax-mark m "${ED}/usr/bin/rstudio" doconfd "${FILESDIR}"/rstudio-server.conf - dodir /etc/rstudio insinto /etc/rstudio doins "${FILESDIR}"/rsession.conf dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf diff --git a/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild b/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild index 2de83f6f633f..6c4943d4513b 100644 --- a/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild +++ b/sci-mathematics/rstudio/rstudio-1.2.5042.ebuild @@ -100,6 +100,7 @@ PATCHES=( "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch "${FILESDIR}"/${PN}-1.2.5042-boost-1.73.0.patch + "${FILESDIR}"/${PN}-1.2.5042-R-4.0.0.patch ) src_unpack() { @@ -209,7 +210,6 @@ src_install() { cmake-utils_src_install use dedicated || pax-mark m "${ED}/usr/bin/rstudio" doconfd "${FILESDIR}"/rstudio-server.conf - dodir /etc/rstudio insinto /etc/rstudio doins "${FILESDIR}"/rsession.conf dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf diff --git a/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild b/sci-mathematics/rstudio/rstudio-1.3.959.ebuild index 2ba27bd51487..d708ec5bd513 100644 --- a/sci-mathematics/rstudio/rstudio-1.2.1335.ebuild +++ b/sci-mathematics/rstudio/rstudio-1.3.959.ebuild @@ -1,29 +1,21 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -inherit eutils user cmake-utils gnome2-utils pam xdg-utils java-pkg-2 pax-utils qmake-utils vcs-clean +inherit eutils cmake-utils pam xdg-utils java-pkg-2 java-ant-2 pax-utils prefix qmake-utils vcs-clean # TODO -# * package gin and gwt # * use dict from tree, linguas # * do src_test (use junit from tree?) -# update from scripts in dependencies/common -# egrep '(GWT_SDK_VER=|GIN_VER=|SELENIUM_VER=|CHROMEDRIVER_VER=)' dependencies/common/install-gwt -GWT_VER=2.8.1 GIN_VER=2.1.2 -SELENIUM_VER=2.37.0 -CHROMEDRIVER_VER=2.7 # grep 'PANDOC_VERSION=' dependencies/common/install-pandoc -# It should be PANDOC_VER=2.3.1 however >=app-text/pandoc-2.3.1 is not yet in portage +# It should be PANDOC_VER=2.7.3 however >=app-text/pandoc-2.7.3 is not yet in portage PANDOC_VER=1.19.2.1 -# ls dependencies/common/*.tar.gz -PACKRAT_VER=0.98.1000 -RMARKDOWN_VER=0.98.1000 -SHINYAPPS_VER=0.98.1000 -RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0 +# grep -5 QT_CANDIDATES src/cpp/desktop/CMakeLists.txt +QT_VER=5.12.6 +QT_SLOT=5 DESCRIPTION="IDE for the R language" HOMEPAGE=" @@ -31,16 +23,7 @@ HOMEPAGE=" https://github.com/rstudio/rstudio/" SRC_URI=" https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz - https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip - https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip - https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip - https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar - https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip - https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz - https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz - https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz - https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz " LICENSE="AGPL-3" @@ -48,16 +31,18 @@ SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="dedicated libressl server" -QT_VER=5.4 -QT_SLOT=5 RDEPEND=" >=app-text/pandoc-${PANDOC_VER} + dev-java/aopalliance:1 + dev-java/gin:2.1 + dev-java/javax-inject + =dev-java/validation-api-1.0*:1.0[source] dev-haskell/pandoc-citeproc - >=dev-lang/R-2.11.1 - >=dev-libs/boost-1.63:= + dev-lang/R + dev-libs/boost:= >=dev-libs/mathjax-2.7.4 sys-apps/util-linux - >=sys-devel/clang-3.5.0:* + sys-devel/clang:* sys-libs/zlib >=virtual/jre-1.8:= x11-libs/pango @@ -82,6 +67,15 @@ RDEPEND=" server? ( sys-libs/pam ) ) dedicated? ( sys-libs/pam ) + dedicated? ( + sys-libs/pam + acct-user/rstudio-server + acct-group/rstudio-server + ) + server? ( + acct-user/rstudio-server + acct-group/rstudio-server + ) !libressl? ( dev-libs/openssl:0= ) libressl? ( dev-libs/libressl:0= )" DEPEND="${RDEPEND} @@ -92,50 +86,23 @@ DEPEND="${RDEPEND} # test? ( dev-java/junit:4 ) PATCHES=( - "${FILESDIR}"/${PN}-1.2.1335-prefs.patch - "${FILESDIR}"/${PN}-1.2.1335-paths.patch - "${FILESDIR}"/${PN}-1.2.1335-pandoc.patch + "${FILESDIR}"/${PN}-1.3.959-prefs.patch + "${FILESDIR}"/${PN}-1.3.959-paths.patch + "${FILESDIR}"/${PN}-1.3.959-pandoc-mathjax.patch "${FILESDIR}"/${PN}-1.2.1335-linker_flags.patch - "${FILESDIR}"/${PN}-1.2.1335-qtsingleapplication.patch + "${FILESDIR}"/${PN}-1.3.959-qtsingleapplication.patch "${FILESDIR}"/${PN}-1.0.44-systemd.patch - "${FILESDIR}"/${PN}-1.2.1335-core.patch - "${FILESDIR}"/${PN}-1.2.1335-fix-ptr-int-compare.patch - "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p1.patch - "${FILESDIR}"/${PN}-1.2.1335-boost-1.70.0_p2.patch - "${FILESDIR}"/${PN}-1.2.1335-boost-1.72-filesystem.patch + "${FILESDIR}"/${PN}-1.3.959-core.patch + "${FILESDIR}"/${PN}-1.2.5042-boost-1.73.0.patch + "${FILESDIR}"/${PN}-1.3.959-R-4.0.0.patch ) src_unpack() { - unpack ${P}.tar.gz gwt-${GWT_VER}.zip + unpack ${P}.tar.gz cd "${S}" || die - mkdir -p src/gwt/lib/{gin,gwt} \ - dependencies/common/dictionaries \ - src/gwt/lib/selenium/${SELENIUM_VER} \ - src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die - mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die - unzip -qd src/gwt/lib/gin/${GIN_VER} \ - "${DISTDIR}"/gin-${GIN_VER}.zip || die + mkdir -p dependencies/common/dictionaries unzip -qd dependencies/common/dictionaries \ "${DISTDIR}"/core-dictionaries.zip || die - unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \ - "${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die - cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \ - src/gwt/lib/selenium/${SELENIUM_VER}/ || die - cp "${DISTDIR}"/chromedriver-linux \ - src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die - cd dependencies/common || die - unpack packrat-${PACKRAT_VER}.tar.gz - unpack rmarkdown-${RMARKDOWN_VER}.tar.gz - unpack shinyapps-${SHINYAPPS_VER}.tar.gz - unpack rsconnect_${RSCONNECT_VER}.tar.gz - cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \ - . || die - cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \ - . || die - cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \ - . || die - cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \ - . || die } src_prepare() { @@ -162,6 +129,11 @@ src_prepare() { -e "s:/usr:${EPREFIX}/usr:g" \ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + # install themes in /etc/rstudio/extra/sthemes instead of /usr/extra/themes + sed -i \ + -e "s@\(DESTINATION \"\)\(extras/themes\"\)@\1${EROOT}/etc/rstudio/\2@" \ + src/cpp/server/CMakeLists.txt || die + # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf sed -e "s@/etc/rstudio/rserver.conf@${EROOT}/etc/conf.d/rstudio-server.conf@" \ -i src/cpp/server/ServerOptions.cpp \ @@ -187,10 +159,12 @@ src_prepare() { || die # The git commit for tag: git rev-list -n 1 v${PV} - sed -e 's@git ARGS rev-parse HEAD@echo ARGS 6871a99b32add885fe6fa3d50fe15f62346142e7@'\ + sed -e 's@git ARGS rev-parse HEAD@echo ARGS 3a09be39fd51a8fafa8ae330007937d31924b395@'\ -i "${S}"/CMakeLists.txt \ "${S}"/CMakeGlobals.txt \ || die + + eprefixify src/gwt/build.xml } src_configure() { @@ -200,16 +174,26 @@ src_configure() { local mycmakeargs=( -DDISTRO_SHARE=share/${PN} - -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")" -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")") - -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake -DRSTUDIO_VERIFY_R_VERSION=FALSE + -DRSTUDIO_USE_SYSTEM_BOOST=TRUE ) + if use !dedicated; then + mycmakeargs+=( + -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")" + -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake + ) + fi cmake-utils_src_configure } src_compile() { + local JAVA_ANT_REWRITE_CLASSPATH="yes" + local EANT_BUILD_XML="src/gwt/build.xml" + local EANT_BUILD_TARGET="clean" + java-pkg-2_src_compile + # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny # P: /root/.oracle_jre_usage. export ANT_OPTS="-Duser.home=${T}" @@ -219,9 +203,8 @@ src_compile() { src_install() { export ANT_OPTS="-Duser.home=${T}" cmake-utils_src_install - pax-mark m "${ED}/usr/bin/rstudio" + use dedicated || pax-mark m "${ED}/usr/bin/rstudio" doconfd "${FILESDIR}"/rstudio-server.conf - dodir /etc/rstudio insinto /etc/rstudio doins "${FILESDIR}"/rsession.conf dosym ../conf.d/rstudio-server.conf /etc/rstudio/rserver.conf @@ -232,23 +215,17 @@ src_install() { } pkg_preinst() { - use dedicated || gnome2_icon_savelist java-pkg-2_pkg_preinst } pkg_postinst() { use dedicated || { xdg_desktop_database_update xdg_mimeinfo_database_update - gnome2_icon_cache_update ;} - - if use dedicated || use server; then - enewgroup rstudio-server - enewuser rstudio-server -1 -1 -1 rstudio-server - fi + xdg_icon_cache_update ;} } pkg_postrm() { use dedicated || { xdg_desktop_database_update xdg_mimeinfo_database_update - gnome2_icon_cache_update ;} + xdg_icon_cache_update ;} } |