gentoo resync : 16.01.2021

5 files changed, 0 insertions, 306 deletions

diff --git a/sys-cluster/mpe2/Manifest b/sys-cluster/mpe2/Manifest
deleted file mode 100644
index 18f82bb18501..000000000000
--- a/sys-cluster/mpe2/Manifest
+++ /dev/null
@@ -1,5 +0,0 @@
-AUX slog2sdk-trace_rlog-makefile-fixes.patch 2734 BLAKE2B 490883779a9f04a55a4254213157c6192ddd635c40ff04a76aba08d88719186645df902093d82ca7540032a0d458a372f022ccb669fc7112185b05ec32ebb152 SHA512 6fee1a5b06cb1394a9263d856af3b5522c8b8f10bbd481b1f94644a93290718cb38c753efbeb426d3aed98827049c7c574e1e529dfb34e35134da672c34bd684
-AUX slog2sdk-trace_sample-makefile-fixes.patch 2746 BLAKE2B c77ac2581d8eb9d4f46e452d7543307fc863b0319dab001c6204399d05fe416cf429f8684d03cd17892c4240f0398798c58dba96ee24f99066571d64a580e534 SHA512 dd5f1f86a4a2abc9a5248856b0eddfc276f9bfb1376ac65f98ec28280d98fb6039e4425c5fe3a02b3ef38bd993a0440b200734520f25afef52feee7af9cd11f9
-DIST mpe2-1.0.6p1.tar.gz 9313216 BLAKE2B 0c04d4dc6ed6396140c1d34f2e715c38765999c812f5d04a2e1b3970ab2dfec9bc45ada49e8e2c53f46b745cf3605c508728a9e38cd73ca0cd320cc9c2ce72a4 SHA512 89aa4197aef4fdef14db032f058772c179bbb9055ad369338588a883ed9e75c825e396a1233d8dc079db605eeb1aa3a8ccd392c2df6ea0ccd89cd0433ba371b4
-EBUILD mpe2-1.0.6_p1-r2.ebuild 3827 BLAKE2B 872cecf33b0d62d421c9eeedd91e3fc954f840edab0c17f622ce0d5c9d316492565e9d2c95818e4cfb323870f5020ac73b9c91d6d17775f4b30f8520dd885245 SHA512 520cf8cfcbc69a4736629bfef956948ba890806c78412140f6ef54264bd33bee917349ec5d7f04da84f498eb8e5c5af5f848f0e7bde50539d717aa3ce28c733a
-MISC metadata.xml 258 BLAKE2B b832ddd16b2a0a4c37b2384ee33e5270040e0221200f92a78c56dd23acf25a7aec5fbf4ccfca8b82eeb669629681684c19b23bf535bc8b05a4f0bd4fb3fcb53e SHA512 0b1852169d6b1f525065559dee560e10c3fd818f197536da258fd1e4486622ac962f5fdb82a514592d8f70c98f6ea1a3fc48bd1349b31bf186b729a0e53f9037
diff --git a/sys-cluster/mpe2/files/slog2sdk-trace_rlog-makefile-fixes.patch b/sys-cluster/mpe2/files/slog2sdk-trace_rlog-makefile-fixes.patch
deleted file mode 100644
index 4f2119ec69f0..000000000000
--- a/sys-cluster/mpe2/files/slog2sdk-trace_rlog-makefile-fixes.patch
+++ /dev/null
@@ -1,68 +0,0 @@
-From 5bc91497bd4b3d2e4e962ffb2d5b9b471c4183c2 Mon Sep 17 00:00:00 2001
-From: Justin Bronder <jsbronder@gmail.com>
-Date: Mon, 13 Sep 2010 14:18:51 -0400
-Subject: [PATCH 1/2] slog2sdk/trace_rlog makefile fixes
-
-- Respect user-defined LDFLAGS when linking PGM_PRINT and PGM_CHECK.
-- Do not install libraries during the compile phase.
----
- src/slog2sdk/trace_rlog/src/Makefile.in |   19 ++++++++-----------
- 1 files changed, 8 insertions(+), 11 deletions(-)
-
-diff --git a/src/slog2sdk/trace_rlog/src/Makefile.in b/src/slog2sdk/trace_rlog/src/Makefile.in
-index 9b289b8..2d772e0 100644
---- a/src/slog2sdk/trace_rlog/src/Makefile.in
-+++ b/src/slog2sdk/trace_rlog/src/Makefile.in
-@@ -48,7 +48,8 @@ RM               = @RM@
- 
- JNI_INC          = @JNI_INC@
- CFLAGS           = -I.. $(JNI_INC) -I$(TRACE_INCDIR) @COPTS@
--LDFLAGS          = -module -no-undefined -avoid-version @LDFLAGS@
-+LDFLAGS          = @LDFLAGS@
-+LIBLDFLAGS       = -module -no-undefined -avoid-version @LDFLAGS@
- 
- # memory leak checker
- MEMLIBS          = @DEBUG_LIBS@
-@@ -66,33 +67,29 @@ ALL: $(libbuild_dir)/$(LIB_TRACE) $(binbuild_dir)/$(PGM_PRINT) $(binbuild_dir)/$
- 
- $(libbuild_dir)/$(LIB_TRACE): $(LOBJ)
- 	if [ "$(EXPORT_SYMBOLS)" = "yes" ] ; then \
--	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LDFLAGS) \
-+	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LIBLDFLAGS) \
- 	               -export-symbols $(srcdir)/JavaTraceInput.sym \
- 	               -rpath $(libbuild_dir) ; \
- 	else \
--	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LDFLAGS) \
-+	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LIBLDFLAGS) \
- 	               -rpath $(libbuild_dir) ; \
- 	fi
--	$(LIBTOOL) --mode=install $(INSTALL) $(LIB_TRACE) $(libbuild_dir)
--	$(LIBTOOL) --finish $(libbuild_dir)
- 
- INSTALL_LIBSO: $(LOBJ)
- 	if [ "$(EXPORT_SYMBOLS)" = "yes" ] ; then \
--	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LDFLAGS) \
-+	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LIBLDFLAGS) \
- 	               -export-symbols $(srcdir)/JavaTraceInput.sym \
- 	               -rpath $(LIBDIR) ; \
- 	else \
--	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LDFLAGS) \
-+	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LIBLDFLAGS) \
- 	               -rpath $(LIBDIR) ; \
- 	fi
--	$(LIBTOOL) --mode=install $(INSTALL) $(LIB_TRACE) $(DESTDIR)$(LIBDIR)
--	$(LIBTOOL) --finish $(LIBDIR)
- 
- $(binbuild_dir)/$(PGM_PRINT): $(OBJ4T)
--	$(CC) @COPTS@ -o $@ $(OBJ4T) $(MEMLIBS)
-+	$(CC) @COPTS@ $(LDFLAGS) -o $@ $(OBJ4T) $(MEMLIBS)
- 
- $(binbuild_dir)/$(PGM_CHECK): $(OBJ4E)
--	$(CC) @COPTS@ -o $@ $(OBJ4E) $(MEMLIBS)
-+	$(CC) @COPTS@ $(LDFLAGS) -o $@ $(OBJ4E) $(MEMLIBS)
- 
- clean:
- 	@-$(RM) *.@OBJEXT@ *.lo *.la
--- 
-1.7.1
-
diff --git a/sys-cluster/mpe2/files/slog2sdk-trace_sample-makefile-fixes.patch b/sys-cluster/mpe2/files/slog2sdk-trace_sample-makefile-fixes.patch
deleted file mode 100644
index 717911ffb710..000000000000
--- a/sys-cluster/mpe2/files/slog2sdk-trace_sample-makefile-fixes.patch
+++ /dev/null
@@ -1,68 +0,0 @@
-From b23d8d40cf62d03cad7ce777565069368e040a96 Mon Sep 17 00:00:00 2001
-From: Justin Bronder <jsbronder@gmail.com>
-Date: Mon, 13 Sep 2010 14:22:10 -0400
-Subject: [PATCH 2/2] slog2sdk/trace_sample makefile fixes
-
-- Respect user-defined LDFLAGS when linking PGM_PRINT and PGM_CHECK.
-- Do not install libraries during the compile phase.
----
- src/slog2sdk/trace_sample/src/Makefile.in |   19 ++++++++-----------
- 1 files changed, 8 insertions(+), 11 deletions(-)
-
-diff --git a/src/slog2sdk/trace_sample/src/Makefile.in b/src/slog2sdk/trace_sample/src/Makefile.in
-index f716fff..8d3641a 100644
---- a/src/slog2sdk/trace_sample/src/Makefile.in
-+++ b/src/slog2sdk/trace_sample/src/Makefile.in
-@@ -48,7 +48,8 @@ RM               = @RM@
- 
- JNI_INC          = @JNI_INC@
- CFLAGS           = -I.. $(JNI_INC) -I$(TRACE_INCDIR) @COPTS@
--LDFLAGS          = -module -no-undefined -avoid-version @LDFLAGS@
-+LDFLAGS          = @LDFLAGS@
-+LIBLDFLAGS       = -module -no-undefined -avoid-version @LDFLAGS@
- 
- # memory leak checker
- MEMLIBS          = @DEBUG_LIBS@
-@@ -66,33 +67,29 @@ ALL: $(libbuild_dir)/$(LIB_TRACE) $(binbuild_dir)/$(PGM_PRINT) $(binbuild_dir)/$
- 
- $(libbuild_dir)/$(LIB_TRACE): $(LOBJ)
- 	if [ "$(EXPORT_SYMBOLS)" = "yes" ] ; then \
--	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LDFLAGS) \
-+	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LIBLDFLAGS) \
- 	               -export-symbols $(srcdir)/JavaTraceInput.sym \
- 	               -rpath $(libbuild_dir) ; \
- 	else \
--	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LDFLAGS) \
-+	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LIBLDFLAGS) \
- 	               -rpath $(libbuild_dir) ; \
- 	fi
--	$(LIBTOOL) --mode=install $(INSTALL) $(LIB_TRACE) $(libbuild_dir)
--	$(LIBTOOL) --finish $(libbuild_dir)
- 
- INSTALL_LIBSO: $(LOBJ)
- 	if [ "$(EXPORT_SYMBOLS)" = "yes" ] ; then \
--	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LDFLAGS) \
-+	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LIBLDFLAGS) \
- 	               -export-symbols $(srcdir)/JavaTraceInput.sym \
- 	               -rpath $(LIBDIR) ; \
- 	else \
--	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LDFLAGS) \
-+	    $(LIBTOOL) --mode=link $(CC) -o $(LIB_TRACE) $(LOBJ) $(LIBLDFLAGS) \
- 	               -rpath $(LIBDIR) ; \
- 	fi
--	$(LIBTOOL) --mode=install $(INSTALL) $(LIB_TRACE) $(DESTDIR)$(LIBDIR)
--	$(LIBTOOL) --finish $(LIBDIR)
- 
- $(binbuild_dir)/$(PGM_PRINT): $(OBJ4T)
--	$(CC) @COPTS@ -o $@ $(OBJ4T) $(MEMLIBS)
-+	$(CC) @COPTS@ $(LDFLAGS) -o $@ $(OBJ4T) $(MEMLIBS)
- 
- $(binbuild_dir)/$(PGM_CHECK): $(OBJ4E)
--	$(CC) @COPTS@ -o $@ $(OBJ4E) $(MEMLIBS)
-+	$(CC) @COPTS@ $(LDFLAGS) -o $@ $(OBJ4E) $(MEMLIBS)
- 
- clean:
- 	@-$(RM) *.@OBJEXT@ *.lo *.la
--- 
-1.7.1
-
diff --git a/sys-cluster/mpe2/metadata.xml b/sys-cluster/mpe2/metadata.xml
deleted file mode 100644
index f5fb83321f9e..000000000000
--- a/sys-cluster/mpe2/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>cluster@gentoo.org</email>
-		<name>Gentoo Cluster Project</name>
-	</maintainer>
-</pkgmetadata>
diff --git a/sys-cluster/mpe2/mpe2-1.0.6_p1-r2.ebuild b/sys-cluster/mpe2/mpe2-1.0.6_p1-r2.ebuild
deleted file mode 100644
index 71802728bcba..000000000000
--- a/sys-cluster/mpe2/mpe2-1.0.6_p1-r2.ebuild
+++ /dev/null
@@ -1,157 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FORTRAN_NEEDED=fortran
-
-inherit epatch fortran-2 java-pkg-opt-2 toolchain-funcs
-
-MY_P=${P/_/}
-
-DESCRIPTION="MPI development tools"
-HOMEPAGE="http://www-unix.mcs.anl.gov/perfvis/download/index.htm"
-SRC_URI="ftp://ftp.mcs.anl.gov/pub/mpi/${PN%2}/${MY_P}.tar.gz"
-
-LICENSE="mpich2"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="debug minimal fortran threads"
-
-COMMON_DEPEND="
-	!minimal? (
-		x11-libs/libXtst
-		x11-libs/libXi
-	)
-	|| (
-		sys-cluster/openmpi[fortran?,threads?]
-		sys-cluster/mpich2[fortran?,threads?]
-	)"
-
-DEPEND="
-	!minimal? ( >=virtual/jdk-1.6 )
-	${COMMON_DEPEND}"
-
-RDEPEND="
-	!minimal? ( >=virtual/jre-1.6 )
-	${COMMON_DEPEND}"
-
-S="${WORKDIR}"/${MY_P}
-MPE_IMP=""
-
-# README:
-# This ebuild is created to handle building with both mpich2 and openmpi.
-# However, without empi (in the science overlay), and some further
-# conversion to use mpi.eclass, we can only handle one implementation
-# at a time.  I still believe it's better to have the ebuild setup
-# correctly in preperation.
-
-pkg_setup() {
-	fortran-2_pkg_setup
-	local i
-
-	if has_version sys-cluster/openmpi; then
-		MPE_IMP=openmpi
-	elif has_version sys-cluster/mpich2; then
-		MPE_IMP=mpich2
-	elif has_version sys-cluster/mpich; then
-		MPE_IMP=mpich2
-	else
-		die "Unknown MPI implementation"
-	fi
-
-	export JFLAGS="${JFLAGS} $(java-pkg_javac-args)"
-
-	if [[ "${MPE_IMP}" == openmpi ]] && [ -z "${MPE2_FORCE_OPENMPI_TEST}" ]; then
-		echo
-		elog "Currently src_test fails on collchk with openmpi, hence"
-		elog "testing is disabled by default.  If you would like to"
-		elog "force testing, please add MPE_FORCE_OPENMPI_TEST=1"
-		elog "to your environment."
-		echo
-	fi
-
-	einfo "Building with support for: sys-cluster/${MPE_IMP}"
-
-	use minimal || java-pkg-opt-2_pkg_setup
-}
-
-src_prepare() {
-	# Don't assume path contains ./
-	sed -i 's,\($MPERUN\) $pgm,\1 ./$pgm,' sbin/mpetestexeclog.in || die
-	epatch \
-		"${FILESDIR}"/slog2sdk-trace_rlog-makefile-fixes.patch \
-		"${FILESDIR}"/slog2sdk-trace_sample-makefile-fixes.patch
-
-	use minimal || java-pkg-opt-2_src_prepare
-}
-
-src_configure() {
-	local c="--with-mpicc=/usr/bin/mpicc"
-
-	if use fortran; then
-		c+=" --with-mpif77=/usr/bin/mpif77"
-	else
-		c+=" --disable-f77"
-	fi
-
-	if use minimal; then
-		c+=" --enable-slog2=no --disable-rlog --disable-sample"
-	else
-		c+=" --with-java2=$(java-config --jdk-home) --enable-slog2=build"
-	fi
-
-	[[ "${MPE_IMP}" == openmpi ]] && c+=" --disable-rlog --disable-sample"
-
-	econf ${c} \
-		--sysconfdir=/etc/${PN} \
-		--datadir=/usr/share/${PN} \
-		--with-htmldir=/usr/share/${PN} \
-		--with-docdir=/usr/share/${PN} \
-		--enable-collchk \
-		--enable-wrappers \
-		$(use_enable !minimal graphics) \
-		$(use_enable threads threadlogging) \
-		$(use_enable debug g)
-}
-
-src_test() {
-	local rc
-
-	cd "${S}" || die
-	if [[ "${MPE_IMP}" == mpich2 ]]; then
-		echo "MPD_SECRETWORD=junk" > "${T}"/mpd.conf || die
-		chmod 600 "${T}"/mpd.conf || die
-		export MPD_CONF_FILE="${T}/mpd.conf"
-		"${EPREFIX%/}"/usr/bin/mpd -d --pidfile="${T}"/mpd.pid || die
-	elif [[ "${MPE_IMP}" == openmpi* ]] && [ -z "${MPE2_FORCE_OPENMPI_TEST}" ]; then
-		echo
-		einfo "Skipping tests for openmpi"
-		echo
-		return 0
-	fi
-
-	# No parallel make:
-	# http://trac.mcs.anl.gov/projects/mpich2/ticket/1095#comment:1
-	emake -j1 \
-		CC="${S}"/bin/mpecc \
-		FC="${S}"/bin/mpefc \
-		MPERUN="${EPREFIX%/}/usr/bin/mpiexec -n 4" \
-		CLOG2TOSLOG2="${S}/src/slog2sdk/bin/clog2TOslog2" \
-		check;
-		rc=${?}
-	if [[ "${MPE_IMP}" == mpich2 ]]; then
-		"${EPREFIX%/}"/usr/bin/mpdallexit || kill $(<"${T}"/mpd.pid)
-	fi
-
-	return ${rc}
-}
-
-src_install() {
-	# No parallel make:
-	# http://trac.mcs.anl.gov/projects/mpich2/ticket/1095#comment:1
-	MAKEOPTS+=" -j1"
-	default
-	rm -f "${ED}"/usr/sbin/mpeuninstall || die
-	rm -f "${ED}"/usr/bin/*.in || die
-}