gentoo resync : 25.08.2020

2 files changed, 168 insertions, 0 deletions

diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest
index 88cc7b7707d6..1987d84f0a0c 100644
--- a/sys-cluster/openmpi/Manifest
+++ b/sys-cluster/openmpi/Manifest
@@ -11,6 +11,7 @@ DIST openmpi-3.0.4.tar.bz2 9308341 BLAKE2B 84536082f8415c9a0e41db01d96d64bffc463
 DIST openmpi-3.1.4.tar.bz2 9468371 BLAKE2B 70a93aa170086f43b2eb4f9b7c74673065bd309ae7a4c8f478a6db7523167fd1d25af19f87661149f6dd6033898ab47b86690a0421a01aa6f5a4d70478072e0e SHA512 5b4aafffc79fd85cb94a11a6e2fac563b142ac532191009eb35826c432ed3c391a6616e2ca92eacbf36137468eadb7c0f7ddc787034bc95c4214232ed5128338
 DIST openmpi-4.0.2.tar.bz2 9819372 BLAKE2B 000faa8ff032f9aa6bf5f0a14fb9a363080cfcdd7c6f8ab90bc9507fd7a473d70502574ee1e75c88acecb06c516a643ef7b9e804fb580be9fc860b7b1fb1cc5d SHA512 634d45d989f1e0b8848bfb4eb4527c7edd76d4fccd77a5f8d85a46a5822f97ba653adf13df857c87ae56a8117b4ae2d45ec24249c6ee41a562446d4112ddb770
 DIST openmpi-4.0.3.tar.bz2 9856669 BLAKE2B 571e8038cdf125bfb452fbee44d8397f8e724498971409fb25e11cc90ad4d7f9106f4ad093d4722754303808b82c58bf3b39a72a2567192efd1b98422f09160f SHA512 01f773064c575a0fe6ab081c20c5cf07ba1c9eada5ecfe520d14ce2b9fc6d021d0f56a0159fa354fd6c8e2bb7354a272aa8d0063b351f59251deb56474849acc
+DIST openmpi-4.0.4.tar.bz2 9748444 BLAKE2B 3c3258b7cd71156deec317479ac1ea9766b09447b77174e448a63dab30f75a525c4142159ff58ad0b6208282e36d568e4cd4e7cc1f8b9b34cad8561ce2969a72 SHA512 6c193b4b5cbfd9d48fa5efcef01372c424b51ae5e9727ccf4235e3b14556dfeb010865e41a9473419ccda16559139aa469086b1fff9abfd337e87387fdec1c64
 EBUILD openmpi-1.10.7.ebuild 6265 BLAKE2B 33362f7aa92673ae525b737239a81d608db4b783e62130bf30a6cc1b29d6f59cf2f3bff21e3d0389e582d81b25e7949eab5de965e124e7b3d5b6b538343f33e8 SHA512 5434a10d4c06ad6cc4da12ec45192ce2f08ff0c95bf138487b75b81dfb6a6055b5bcb6d81827e885935ef8481907f631268e9d6065fba330ec3e553f9ce10806
 EBUILD openmpi-1.4.5.ebuild 2413 BLAKE2B 0e4c9ad51c2f7f44449b0a5d3e1400de600f5337d591dcb89eb938455afa24d891573e03abdfa7434432b8377ffb3f9aefc291881713de0b80fe50322b962ba7 SHA512 187962e3788b94607b9a22728c6f90405cd4c49007413e9d0cfb4df45d5e67f30bcd2129ae8132d08460d9760891f2b15539f995e481962d91c2b7c5a7005002
 EBUILD openmpi-1.6.5-r1.ebuild 4944 BLAKE2B 8e5686a037431c45d7ebde9e82e633f138dc887ca2f1cc2ae24e76dc800ace2a79f63f6c7804794cde1cad5ec7e84b00ded707d84424d7a6413da9c80359fb51 SHA512 008b5b5ad61126d5a758784f6c2c805a55837de6dc109c11758941e2e3a414d3361ba3dbb3959185e2b6b3f02eb7ecf4a8aadb76bea0b872e463c13620a48a08
@@ -22,4 +23,5 @@ EBUILD openmpi-3.0.4.ebuild 5379 BLAKE2B 7cede9248edcc56701ac64c26fdc16445b0dfbd
 EBUILD openmpi-3.1.4.ebuild 5379 BLAKE2B 7cede9248edcc56701ac64c26fdc16445b0dfbd1488b791638d50861dc301b36780abb49b23499d3551333fe4ec005428eb86cb3d546d21d6559a2b995dd38be SHA512 2ed00f544c10841e646a33e14255b17c86e6ef356d57ff94c3e6fca992b6f38957ec537f0d47812c74364b4bc7a00b79761093b3dab260de60a2e5ea1926a320
 EBUILD openmpi-4.0.2.ebuild 5321 BLAKE2B 09350d41a27b89cc1938e2ecc9330b5b9511cfda313ec1c46467ae148ecf2c752d301d1c21d9cb164550f9f792fdbd1d1684a1ed2285be59a85d7c5ce4b332cf SHA512 09b95d07f982900cd4d46eaaba11a316528d37c6ac48b1ce51fb94968481530e8283170405bb3c7c9272ae7c452f3cc8f57a55ddd645854c6c1c318f45363b35
 EBUILD openmpi-4.0.3.ebuild 5321 BLAKE2B 09350d41a27b89cc1938e2ecc9330b5b9511cfda313ec1c46467ae148ecf2c752d301d1c21d9cb164550f9f792fdbd1d1684a1ed2285be59a85d7c5ce4b332cf SHA512 09b95d07f982900cd4d46eaaba11a316528d37c6ac48b1ce51fb94968481530e8283170405bb3c7c9272ae7c452f3cc8f57a55ddd645854c6c1c318f45363b35
+EBUILD openmpi-4.0.4.ebuild 5321 BLAKE2B 09350d41a27b89cc1938e2ecc9330b5b9511cfda313ec1c46467ae148ecf2c752d301d1c21d9cb164550f9f792fdbd1d1684a1ed2285be59a85d7c5ce4b332cf SHA512 09b95d07f982900cd4d46eaaba11a316528d37c6ac48b1ce51fb94968481530e8283170405bb3c7c9272ae7c452f3cc8f57a55ddd645854c6c1c318f45363b35
 MISC metadata.xml 928 BLAKE2B f6cacb50815977ad28b83ec24725021a140db9592152d2a9e238da051058287c01c73ac557392946f83949caee2f75a847ba5e82c4b6f816ab3f8288aa38b719 SHA512 a7ba5e4bfc8e6c1a74667f31c4d8df580699fa84766cbc597a66c1a0ed12ece60bf1f683fcbd30529b042588ae4460741b4eef407e232532a3eede1766326f1e
diff --git a/sys-cluster/openmpi/openmpi-4.0.4.ebuild b/sys-cluster/openmpi/openmpi-4.0.4.ebuild
new file mode 100644
index 000000000000..082ecda8d6d3
--- /dev/null
+++ b/sys-cluster/openmpi/openmpi-4.0.4.ebuild
@@ -0,0 +1,166 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+FORTRAN_NEEDED=fortran
+
+inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib multilib-minimal
+
+MY_P=${P/-mpi}
+S=${WORKDIR}/${MY_P}
+
+IUSE_OPENMPI_FABRICS="
+	openmpi_fabrics_ofed
+	openmpi_fabrics_knem
+	openmpi_fabrics_psm"
+
+IUSE_OPENMPI_RM="
+	openmpi_rm_pbs
+	openmpi_rm_slurm"
+
+IUSE_OPENMPI_OFED_FEATURES="
+	openmpi_ofed_features_control-hdr-padding
+	openmpi_ofed_features_udcm
+	openmpi_ofed_features_rdmacm
+	openmpi_ofed_features_dynamic-sl"
+
+DESCRIPTION="A high-performance message passing library (MPI)"
+HOMEPAGE="https://www.open-mpi.org"
+SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
+IUSE="cma cuda cxx fortran heterogeneous ipv6 java romio
+	${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
+
+REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
+	openmpi_rm_pbs? ( !openmpi_rm_slurm )
+	openmpi_fabrics_psm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )"
+
+CDEPEND="
+	!sys-cluster/mpich
+	!sys-cluster/mpich2
+	!sys-cluster/nullmpi
+	>=dev-libs/libevent-2.0.22:=[${MULTILIB_USEDEP},threads]
+	dev-libs/libltdl:0[${MULTILIB_USEDEP}]
+	>=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP}]
+	>=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}]
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= )
+	openmpi_fabrics_ofed? ( sys-fabric/ofed:* )
+	openmpi_fabrics_knem? ( sys-cluster/knem )
+	openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* )
+	openmpi_rm_pbs? ( sys-cluster/torque )
+	openmpi_rm_slurm? ( sys-cluster/slurm )
+	openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )"
+
+RDEPEND="${CDEPEND}
+	java? ( >=virtual/jre-1.6 )"
+
+DEPEND="${CDEPEND}
+	java? ( >=virtual/jdk-1.6 )"
+
+MULTILIB_WRAPPED_HEADERS=(
+	/usr/include/mpi.h
+	/usr/include/openmpi/ompi/mpi/java/mpiJava.h
+)
+
+pkg_setup() {
+	fortran-2_pkg_setup
+	java-pkg-opt-2_pkg_setup
+
+	elog
+	elog "OpenMPI has an overwhelming count of configuration options."
+	elog "Don't forget the EXTRA_ECONF environment variable can let you"
+	elog "specify configure options if you find them necessary."
+	elog
+}
+
+src_prepare() {
+	default
+
+	# Necessary for scalibility, see
+	# http://www.open-mpi.org/community/lists/users/2008/09/6514.php
+	echo 'oob_tcp_listen_mode = listen_thread' \
+		>> opal/etc/openmpi-mca-params.conf || die
+}
+
+multilib_src_configure() {
+	if use java; then
+		# We must always build with the right -source and -target
+		# flags. Passing flags to javac isn't explicitly supported here
+		# but we can cheat by overriding the configure test for javac.
+		export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)"
+	fi
+
+	ECONF_SOURCE=${S} econf \
+		--sysconfdir="${EPREFIX}/etc/${PN}" \
+		--enable-pretty-print-stacktrace \
+		--enable-orterun-prefix-by-default \
+		--with-hwloc="${EPREFIX}/usr" \
+		--with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--with-libltdl="${EPREFIX}/usr" \
+		--with-libevent="${EPREFIX}/usr" \
+		--with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--enable-mpi-fortran=$(usex fortran all no) \
+		$(use_enable cxx mpi-cxx) \
+		$(use_with cma) \
+		$(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \
+		$(use_enable romio io-romio) \
+		$(use_enable heterogeneous) \
+		$(use_enable ipv6) \
+		$(multilib_native_use_enable java mpi-java) \
+		$(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
+		$(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \
+		$(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \
+		$(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \
+		$(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \
+		$(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \
+		$(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \
+		$(multilib_native_use_with openmpi_rm_pbs tm) \
+		$(multilib_native_use_with openmpi_rm_slurm slurm)
+}
+
+multilib_src_test() {
+	# Doesn't work with the default src_test as the dry run (-n) fails.
+	emake -j1 check
+}
+
+multilib_src_install() {
+	default
+
+	# fortran header cannot be wrapped (bug #540508), workaround part 1
+	if multilib_is_native_abi && use fortran; then
+		mkdir "${T}"/fortran || die
+		mv "${ED}"/usr/include/mpif* "${T}"/fortran || die
+	else
+		# some fortran files get installed unconditionally
+		rm \
+			"${ED}"/usr/include/mpif* \
+			"${ED}"/usr/bin/mpif* \
+			|| die
+	fi
+}
+
+multilib_src_install_all() {
+	# fortran header cannot be wrapped (bug #540508), workaround part 2
+	if use fortran; then
+		mv "${T}"/fortran/mpif* "${ED}"/usr/include || die
+	fi
+
+	# Remove la files, no static libs are installed and we have pkg-config
+	find "${ED}" -name '*.la' -delete || die
+
+	if use java; then
+		local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar
+		java-pkg_dojar "${mpi_jar}"
+		# We don't want to install the jar file twice
+		# so let's clean after ourselves.
+		rm "${mpi_jar}" || die
+	fi
+	einstalldocs
+}