diff options
Diffstat (limited to 'dev-python/scipy')
| -rw-r--r-- | dev-python/scipy/Manifest | 2 | ||||
| -rw-r--r-- | dev-python/scipy/scipy-1.14.1.ebuild | 161 |
2 files changed, 163 insertions, 0 deletions
diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest index 606ac5f6e8e4..5499d94a6527 100644 --- a/dev-python/scipy/Manifest +++ b/dev-python/scipy/Manifest @@ -1,6 +1,8 @@ AUX scipy-1.14.0-np2.patch 2765 BLAKE2B b243c73d6f3671f3d0e70bdf21b2f956da6a1b8dea849dadbf6a5a62d3fdb858db6fbd3b15c3c6b4497d95ffda3665605295c3433c42af1b415f27be56c7a73e SHA512 855f025d5b49eef9a480af2f050f7a6d9957c16a04d8091500877528767b5e70859ce0bd8a367ab676a68f1f21370996d7bf8e68fa99bbc6f330460563567e60 DIST scipy-1.14.0.tar.gz 58618870 BLAKE2B bf9ed05628b02dc058555402995caae722cf6802bde80387d4e4477ec533589a66ca70b5dd44a32ddac652c7c69300406434b80e7cbc9aee2a78ae6b26ee4c2b SHA512 6579d988a2093602f5fc82203bbb5dc5690a95032484b5d5bd843d1e7995b3b89d802c7b38ec0345c1f3d8e22c98fb92b3982a1eadfcdf63607f929a52b56abf +DIST scipy-1.14.1.tar.gz 58620554 BLAKE2B 5cb383648a5f3b8d0d321efcd66992212c59ce3fc3dbf812a2fa97c09cb18831b280af6c7689553644f83c531a266e9152e2a139a12aed08307e1ed64deea78e SHA512 20e3cf13590f76dfdc40ca8f90e6d5a68502e74415f37fa24fdb8169098e1d7f0aa631ae742c8c3e9573fa7d63da61986d51f35f090a3785873ae0761f7fcfa6 DIST scipy-html-1.14.0.zip 65723829 BLAKE2B ba47dbf00a5d2a53a9addc5ea68ab18b42f211a018b89aa4b0b57ff0dee02e410a3effc59ddf8fbbc5aa33075d45d86880aed3a14068da5bd7b62ee526199967 SHA512 93be0bafcc64cea1ba130bbcc77c0741acc4f819c84a5030391a22657a1bc63abe8434a2723f66b7ad04c0809dc6d02e3a97ffb8d94bd3d4a4bb759ee796b475 EBUILD scipy-1.14.0-r1.ebuild 4343 BLAKE2B 45caf57e6f6f62287150efd0e7a8d6c484a58332027cfa05042d76833f0a26ab5e35c177c2eed2b85a332ac41b206e98ea254e6010257544bc21f15fe176c850 SHA512 af45e4f2a2adcc88dee971b865be13026e1853a76964844c533ac3c2c63ba2013f566224a746500f4851845265c95e220a0ee0b8ada5bb1fa3ea129c48b80e9d EBUILD scipy-1.14.0.ebuild 4200 BLAKE2B e09240f54150aa756aa33388670a242835fafc7bfc1f4373156e72eee64176e44f49681fd2e88e87ffe8b6d9702b592870dc16f1ea61018f4915a82039f76143 SHA512 aa078bb6fbf623ba13095b1a2a0768f07945c888cb49310ec90ca460f33c9496a410095487e0891b8e93d2807cbb38484cf9ca71cac6629370bf7ea2e6fe004f +EBUILD scipy-1.14.1.ebuild 4079 BLAKE2B a82b106fdbbfb5312529050f9f0f2feac7340c5486b0a913cd38d1a4f5e1558e76eea7bf560878c2d4d9d419a3ed19584b235f16190d86c2e906f6d8e064c313 SHA512 2078e92f365ca141d685d4e777141e27493a12e4b4c2f982bbe3296a75e1144c5584079fa372920bd843a0bcf595b4440f57ff1b2bc5fd5382d96c2f64b3c512 MISC metadata.xml 953 BLAKE2B a09ea1325a175e349fbc3ca77c5e7b373538ea01147e8544f44b7d4e0c55fbbc2012431fcfe9a3457e82d295e4b5630df1ed69c48ef3462ed9b157af30a1e09a SHA512 74a21c6e1a9bef95b3d74a9513c59d302f473725c04fa32a9991b6108113c0f4b78179ce4a628140e7aa870c24ca60bddf7a00063b6b73dd45110112311371d8 diff --git a/dev-python/scipy/scipy-1.14.1.ebuild b/dev-python/scipy/scipy-1.14.1.ebuild new file mode 100644 index 000000000000..14c9d3332cc5 --- /dev/null +++ b/dev-python/scipy/scipy-1.14.1.ebuild @@ -0,0 +1,161 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=fortran +DISTUTILS_EXT=1 +DISTUTILS_USE_PEP517=meson-python +PYTHON_COMPAT=( pypy3 python3_{10..13} ) +PYTHON_REQ_USE="threads(+)" + +inherit flag-o-matic fortran-2 distutils-r1 + +DESCRIPTION="Scientific algorithms library for Python" +HOMEPAGE=" + https://scipy.org/ + https://github.com/scipy/scipy/ + https://pypi.org/project/scipy/ +" + +if [[ ${PV} == *9999* ]] ; then + inherit git-r3 + + # Need submodules, so git for now. + EGIT_REPO_URI="https://github.com/scipy/scipy" + EGIT_BRANCH="maintenance/$(ver_cut 1-2).x" + EGIT_SUBMODULES=( '*' ) +else + inherit pypi + + # Upstream is often behind with doc updates + DOC_PV=1.14.0 + + SRC_URI+=" + doc? ( + https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip + )" + + if [[ ${PV} != *rc* ]] ; then + KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86" + fi +fi + +LICENSE="BSD LGPL-2" +SLOT="0" +IUSE="doc +fortran test-rust" + +# umfpack is technically optional but it's preferred to have it available. +DEPEND=" + >=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}] + sci-libs/arpack:= + sci-libs/umfpack + virtual/cblas + >=virtual/lapack-3.8 +" +RDEPEND=" + ${DEPEND} + dev-python/pillow[${PYTHON_USEDEP}] +" +BDEPEND=" + dev-lang/swig + >=dev-python/cython-3.0.8[${PYTHON_USEDEP}] + >=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}] + >=dev-python/pybind11-2.12.0[${PYTHON_USEDEP}] + >=dev-build/meson-1.1.0 + !kernel_Darwin? ( dev-util/patchelf ) + virtual/pkgconfig + doc? ( app-arch/unzip ) + fortran? ( + >=dev-python/pythran-0.16.0[${PYTHON_USEDEP}] + ) + test? ( + >=dev-python/hypothesis-6.30[${PYTHON_USEDEP}] + ) + test-rust? ( + dev-python/pooch[${PYTHON_USEDEP}] + ) +" + +EPYTEST_XDIST=1 +distutils_enable_tests pytest + +src_unpack() { + default + + if use doc; then + unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die + fi +} + +python_configure_all() { + DISTUTILS_ARGS=( + -Dblas=blas + -Dlapack=lapack + -Duse-pythran=$(usex fortran true false) + ) + + # https://bugs.gentoo.org/932721 + has_version '>=dev-python/numpy-2.0.0' && filter-lto +} + +python_test() { + cd "${BUILD_DIR}/install$(python_get_sitedir)" || die + + local EPYTEST_DESELECT=( + # Network + scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all + scipy/datasets/tests/test_data.py::TestDatasets::test_ascent + scipy/datasets/tests/test_data.py::TestDatasets::test_face + scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram + + # Precision issue with diff. blas? + scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799 + + # Crashes with assertion, not a regression + # https://github.com/scipy/scipy/issues/19321 + scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object + + # timeouts + scipy/sparse/linalg/tests/test_propack.py::test_examples + # hang or incredibly slow + scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient + scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient + + # TODO + scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems + ) + local EPYTEST_IGNORE=() + + if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then + EPYTEST_IGNORE+=( + scipy/datasets/tests/test_data.py + ) + fi + + case ${EPYTHON} in + pypy3) + EPYTEST_DESELECT+=( + # fd leaks in tests + # https://github.com/scipy/scipy/issues/19553 + scipy/fft/_pocketfft/tests/test_real_transforms.py + # TODO + 'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]' + # missing dict.__ror__ + # https://github.com/pypy/pypy/issues/4934 + 'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]' + # mismatched exception message + scipy/optimize/tests/test_hessian_update_strategy.py::TestHessianUpdateStrategy::test_initialize_catch_illegal + ) + ;; + esac + + local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1 + epytest scipy +} + +python_install_all() { + use doc && local HTML_DOCS=( "${WORKDIR}"/html/. ) + + distutils-r1_python_install_all +} |