diff options
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r-- | metadata/md5-cache/sci-biology/Manifest.gz | bin | 27494 -> 27315 bytes | |||
-rw-r--r-- | metadata/md5-cache/sci-biology/bamtools-2.5.1 | 2 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/bamtools-9999 | 2 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/bwa-0.7.17 (renamed from metadata/md5-cache/sci-biology/bwa-0.7.16a) | 9 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/seaview-4.3.5 | 13 |
5 files changed, 7 insertions, 19 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex beb1b1472a31..0cdcda66495b 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.1 b/metadata/md5-cache/sci-biology/bamtools-2.5.1 index 39cc9cd45f3f..dd2efa7ee0c7 100644 --- a/metadata/md5-cache/sci-biology/bamtools-2.5.1 +++ b/metadata/md5-cache/sci-biology/bamtools-2.5.1 @@ -9,5 +9,5 @@ LICENSE=MIT RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/2.5.1 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz -> bamtools-2.5.1.tar.gz -_eclasses_=cmake 9f6da23aab151395c55f018fb13a11b2 edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e multilib 98584e405e2b0264d37e8f728327fed1 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs 605c126bed8d87e4378d5ff1645330cb wrapper 4251d4c84c25f59094fd557e0063a974 xdg-utils ff2ff954e6b17929574eee4efc5152ba +_eclasses_=cmake ac7cb516f6a288b6a82bc0649ce49878 edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 l10n 8cdd85e169b835d518bc2fd59f780d8e multilib 98584e405e2b0264d37e8f728327fed1 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs 605c126bed8d87e4378d5ff1645330cb wrapper 4251d4c84c25f59094fd557e0063a974 xdg-utils ff2ff954e6b17929574eee4efc5152ba _md5_=a2299dc6ca850c1c25582656d7586681 diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999 index f7a2c3580007..445061016c75 100644 --- a/metadata/md5-cache/sci-biology/bamtools-9999 +++ b/metadata/md5-cache/sci-biology/bamtools-9999 @@ -8,5 +8,5 @@ LICENSE=MIT PROPERTIES=live RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/9999 -_eclasses_=cmake 9f6da23aab151395c55f018fb13a11b2 edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 git-r3 3e7ec3d6619213460c85e2aa48398441 l10n 8cdd85e169b835d518bc2fd59f780d8e multilib 98584e405e2b0264d37e8f728327fed1 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs 605c126bed8d87e4378d5ff1645330cb wrapper 4251d4c84c25f59094fd557e0063a974 xdg-utils ff2ff954e6b17929574eee4efc5152ba +_eclasses_=cmake ac7cb516f6a288b6a82bc0649ce49878 edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic 09a8beb8e6a8e02dc1e1bd83ac353741 git-r3 3e7ec3d6619213460c85e2aa48398441 l10n 8cdd85e169b835d518bc2fd59f780d8e multilib 98584e405e2b0264d37e8f728327fed1 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f toolchain-funcs 605c126bed8d87e4378d5ff1645330cb wrapper 4251d4c84c25f59094fd557e0063a974 xdg-utils ff2ff954e6b17929574eee4efc5152ba _md5_=a2299dc6ca850c1c25582656d7586681 diff --git a/metadata/md5-cache/sci-biology/bwa-0.7.16a b/metadata/md5-cache/sci-biology/bwa-0.7.17 index 37a9ad4d0c4d..0023fbac6b0f 100644 --- a/metadata/md5-cache/sci-biology/bwa-0.7.16a +++ b/metadata/md5-cache/sci-biology/bwa-0.7.17 @@ -1,11 +1,12 @@ DEFINED_PHASES=configure install +DEPEND=sys-libs/zlib DESCRIPTION=Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner EAPI=7 -HOMEPAGE=https://bio-bwa.sourceforge.net/ +HOMEPAGE=https://github.com/lh3/bwa/ KEYWORDS=~amd64 ~x86 ~x64-macos LICENSE=GPL-3 -RDEPEND=dev-lang/perl +RDEPEND=sys-libs/zlib dev-lang/perl SLOT=0 -SRC_URI=mirror://sourceforge/bio-bwa/bwa-0.7.16a.tar.bz2 +SRC_URI=https://github.com/lh3/bwa/archive/v0.7.17.tar.gz -> bwa-0.7.17.tar.gz _eclasses_=multilib 98584e405e2b0264d37e8f728327fed1 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb -_md5_=6b21049857f301168f361c45510f8256 +_md5_=620c3569e8293303737f7844385c7e82 diff --git a/metadata/md5-cache/sci-biology/seaview-4.3.5 b/metadata/md5-cache/sci-biology/seaview-4.3.5 deleted file mode 100644 index bef00e62e2eb..000000000000 --- a/metadata/md5-cache/sci-biology/seaview-4.3.5 +++ /dev/null @@ -1,13 +0,0 @@ -DEFINED_PHASES=install prepare -DEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) virtual/pkgconfig -DESCRIPTION=A graphical multiple sequence alignment editor -EAPI=5 -HOMEPAGE=http://pbil.univ-lyon1.fr/software/seaview.html -IUSE=+xft -KEYWORDS=amd64 x86 -LICENSE=public-domain -RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml -SLOT=0 -SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.3.5.tar.gz -_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils 2d5b3f4b315094768576b6799e4f926e l10n 8cdd85e169b835d518bc2fd59f780d8e ltprune db8b7ce9d0e663594bcb4a4e72131a79 multilib 98584e405e2b0264d37e8f728327fed1 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 605c126bed8d87e4378d5ff1645330cb vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 -_md5_=38cc02682d853c813df2b6e81cbb51c5 |