8 files changed, 7 insertions, 57 deletions
diff --git a/metadata/md5-cache/sci-mathematics/Manifest.gz b/metadata/md5-cache/sci-mathematics/Manifest.gz
index 141877b806e9..5b50cfb4804a 100644
--- a/metadata/md5-cache/sci-mathematics/Manifest.gz
+++ b/metadata/md5-cache/sci-mathematics/Manifest.gz
diff --git a/metadata/md5-cache/sci-mathematics/gap-4.13.0 b/metadata/md5-cache/sci-mathematics/gap-4.13.0
deleted file mode 100644
index eea24aeaebc9..000000000000
--- a/metadata/md5-cache/sci-mathematics/gap-4.13.0
+++ /dev/null
@@ -1,18 +0,0 @@
-BDEPEND=test? ( dev-gap/gapdoc dev-gap/primgrp dev-gap/smallgrp dev-gap/transgrp )
-DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=dev-libs/gmp:= sys-libs/zlib valgrind? ( dev-debug/valgrind ) readline? ( sys-libs/readline:= )
-DESCRIPTION=System for computational discrete algebra. Core functionality.
-EAPI=8
-HOMEPAGE=https://www.gap-system.org/
-INHERIT=estack
-IUSE=cpu_flags_x86_popcnt debug memcheck minimal readline test valgrind
-KEYWORDS=amd64
-LICENSE=GPL-2+
-PDEPEND=dev-gap/gapdoc dev-gap/primgrp dev-gap/smallgrp dev-gap/transgrp !minimal? ( dev-gap/autpgrp dev-gap/alnuth dev-gap/crisp dev-gap/ctbllib dev-gap/factint dev-gap/fga dev-gap/irredsol dev-gap/laguna dev-gap/polenta dev-gap/polycyclic dev-gap/resclasses dev-gap/sophus dev-gap/tomlib )
-RDEPEND=dev-libs/gmp:= sys-libs/zlib valgrind? ( dev-debug/valgrind ) readline? ( sys-libs/readline:= )
-REQUIRED_USE=?? ( memcheck valgrind )
-RESTRICT=!test? ( test )
-SLOT=0/9
-SRC_URI=https://github.com/gap-system/gap/releases/download/v4.13.0/gap-4.13.0-core.tar.gz
-_eclasses_=estack	c61c368a76fdf3a82fdf8dbaebea3804
-_md5_=6d42020ff468ebb2ac6ee9d249f06d14
diff --git a/metadata/md5-cache/sci-mathematics/gap-4.13.1 b/metadata/md5-cache/sci-mathematics/gap-4.13.1
index 6072d1a21a5f..97904923f9dd 100644
--- a/metadata/md5-cache/sci-mathematics/gap-4.13.1
+++ b/metadata/md5-cache/sci-mathematics/gap-4.13.1
@@ -6,7 +6,7 @@ EAPI=8
 HOMEPAGE=https://www.gap-system.org/
 INHERIT=estack
 IUSE=cpu_flags_x86_popcnt debug memcheck minimal readline test valgrind
-KEYWORDS=~amd64
+KEYWORDS=amd64
 LICENSE=GPL-2+
 PDEPEND=dev-gap/gapdoc dev-gap/primgrp dev-gap/smallgrp dev-gap/transgrp !minimal? ( dev-gap/autpgrp dev-gap/alnuth dev-gap/crisp dev-gap/ctbllib dev-gap/factint dev-gap/fga dev-gap/irredsol dev-gap/laguna dev-gap/polenta dev-gap/polycyclic dev-gap/resclasses dev-gap/sophus dev-gap/tomlib )
 RDEPEND=dev-libs/gmp:= sys-libs/zlib valgrind? ( dev-debug/valgrind ) readline? ( sys-libs/readline:= )
@@ -15,4 +15,4 @@ RESTRICT=!test? ( test )
 SLOT=0/9
 SRC_URI=https://github.com/gap-system/gap/releases/download/v4.13.1/gap-4.13.1-core.tar.gz
 _eclasses_=estack	c61c368a76fdf3a82fdf8dbaebea3804
-_md5_=ef53b858b7385f708788a9151b1b08a1
+_md5_=14e34f086daeb62a8b653a434a4bf9f1
diff --git a/metadata/md5-cache/sci-mathematics/genius-1.0.27 b/metadata/md5-cache/sci-mathematics/genius-1.0.27
index 8c884c8769a3..a803069c2fe6 100644
--- a/metadata/md5-cache/sci-mathematics/genius-1.0.27
+++ b/metadata/md5-cache/sci-mathematics/genius-1.0.27
@@ -11,5 +11,5 @@ LICENSE=GPL-3+
 RDEPEND=>=dev-libs/glib-2.41.1:2 dev-libs/gmp:0= dev-libs/mpfr:0= sys-libs/ncurses:0= sys-libs/readline:0= >=x11-libs/gtk+-3.21.4:3 >=x11-libs/vte-0.50.0:2.91 gui? ( >=x11-libs/gtk+-3.21.4:3 )
 SLOT=0
 SRC_URI=mirror://gnome/sources/genius/1.0/genius-1.0.27.tar.xz doc? ( https://www.jirka.org/genius-reference.pdf )
-_eclasses_=autotools	d12ccbad07b44642a75ac97a3334d8e0	gnome.org	6b39404f1491c60a2d32e3c693a683fe	gnome2	fc9e598eaac41c6ac9ed1a44bc004d03	gnome2-utils	30dbce54b89e77b86f366548f94419ad	gnuconfig	a397adda6984a4c423e28ac274c1ba98	libtool	5f49a16f67f81bdf873e3d1f10b10001	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	xdg	4a14c5c24f121e7da66e5aab4a168c6e	xdg-utils	baea6080dd821f5562d715887954c9d3
+_eclasses_=autotools	d12ccbad07b44642a75ac97a3334d8e0	gnome.org	e1b4f392dbfedfb8974b71b017937f08	gnome2	26fd01914b36038dc8e964ff4bd03a95	gnome2-utils	a8cf148ec7f5ae0b1f1d33ae5f7f9e88	gnuconfig	a397adda6984a4c423e28ac274c1ba98	libtool	5f49a16f67f81bdf873e3d1f10b10001	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084	xdg	4a14c5c24f121e7da66e5aab4a168c6e	xdg-utils	baea6080dd821f5562d715887954c9d3
 _md5_=2eef67748c15484f4dc47700607e7919
diff --git a/metadata/md5-cache/sci-mathematics/nauty-2.8.8 b/metadata/md5-cache/sci-mathematics/nauty-2.8.8
deleted file mode 100644
index 6c089fc0ee14..000000000000
--- a/metadata/md5-cache/sci-mathematics/nauty-2.8.8
+++ /dev/null
@@ -1,15 +0,0 @@
-BDEPEND=sys-apps/help2man >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.17-r1:1.17 >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
-DEFINED_PHASES=configure install prepare test
-DEPEND=dev-libs/gmp:0 sys-libs/zlib sci-mathematics/cliquer
-DESCRIPTION=Computing automorphism groups of graphs and digraphs
-EAPI=8
-HOMEPAGE=https://pallini.di.uniroma1.it/
-INHERIT=autotools
-IUSE=cpu_flags_x86_popcnt examples
-KEYWORDS=amd64 ~arm ~riscv ~x86
-LICENSE=Apache-2.0
-RDEPEND=dev-libs/gmp:0 sys-libs/zlib sci-mathematics/cliquer
-SLOT=0
-SRC_URI=https://pallini.di.uniroma1.it/nauty2_8_8.tar.gz mirror://debian/pool/main/n/nauty/nauty_2.8.8+ds-1.debian.tar.xz https://src.fedoraproject.org/rpms/nauty/raw/rawhide/f/nauty-includes.patch
-_eclasses_=autotools	d12ccbad07b44642a75ac97a3334d8e0	gnuconfig	a397adda6984a4c423e28ac274c1ba98	libtool	5f49a16f67f81bdf873e3d1f10b10001	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=36507333bed2980635b02e85bbc13646
diff --git a/metadata/md5-cache/sci-mathematics/nauty-2.8.8-r1 b/metadata/md5-cache/sci-mathematics/nauty-2.8.8-r1
index 6293e9f44332..d024f1e5eede 100644
--- a/metadata/md5-cache/sci-mathematics/nauty-2.8.8-r1
+++ b/metadata/md5-cache/sci-mathematics/nauty-2.8.8-r1
@@ -6,10 +6,10 @@ EAPI=8
 HOMEPAGE=https://pallini.di.uniroma1.it/
 INHERIT=autotools
 IUSE=cpu_flags_x86_popcnt examples
-KEYWORDS=~amd64 ~arm ~riscv ~x86
+KEYWORDS=amd64 ~arm ~riscv ~x86
 LICENSE=Apache-2.0
 RDEPEND=dev-libs/gmp:0 sys-libs/zlib sci-mathematics/cliquer
 SLOT=0
 SRC_URI=https://pallini.di.uniroma1.it/nauty2_8_8.tar.gz mirror://debian/pool/main/n/nauty/nauty_2.8.8+ds-1.debian.tar.xz https://src.fedoraproject.org/rpms/nauty/raw/rawhide/f/nauty-includes.patch
 _eclasses_=autotools	d12ccbad07b44642a75ac97a3334d8e0	gnuconfig	a397adda6984a4c423e28ac274c1ba98	libtool	5f49a16f67f81bdf873e3d1f10b10001	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=6e218e9716cc109ca00f99da7cb019c3
+_md5_=7050242aee56847e9716d4bfea603d82
diff --git a/metadata/md5-cache/sci-mathematics/pari-2.15.4-r1 b/metadata/md5-cache/sci-mathematics/pari-2.15.4-r1
deleted file mode 100644
index 9c3ee0908808..000000000000
--- a/metadata/md5-cache/sci-mathematics/pari-2.15.4-r1
+++ /dev/null
@@ -1,17 +0,0 @@
-BDEPEND=virtual/pkgconfig doc? ( virtual/latex-base )
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=sys-libs/readline:0= data? ( sci-mathematics/pari-data ) doc? ( X? ( x11-misc/xdg-utils ) ) fltk? ( x11-libs/fltk:1= ) gmp? ( dev-libs/gmp:0= ) X? ( x11-libs/libX11:0= )
-DESCRIPTION=Computer-aided number theory C library and tools
-EAPI=8
-HOMEPAGE=https://pari.math.u-bordeaux.fr/
-INHERIT=flag-o-matic toolchain-funcs
-IUSE=data doc examples fltk gmp test threads X
-KEYWORDS=~alpha amd64 ~arm ~hppa ~mips ~ppc ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux
-LICENSE=GPL-2+
-RDEPEND=sys-libs/readline:0= data? ( sci-mathematics/pari-data ) doc? ( X? ( x11-misc/xdg-utils ) ) fltk? ( x11-libs/fltk:1= ) gmp? ( dev-libs/gmp:0= ) X? ( x11-libs/libX11:0= )
-REQUIRED_USE=fltk? ( !X )
-RESTRICT=!test? ( test )
-SLOT=0/8
-SRC_URI=https://pari.math.u-bordeaux.fr/pub/pari/unix/pari-2.15.4.tar.gz
-_eclasses_=flag-o-matic	e503ea5acc20410237ba33ec3f7c857d	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=3b1630d029ae2658be244823eefe10bd
diff --git a/metadata/md5-cache/sci-mathematics/pari-2.15.5 b/metadata/md5-cache/sci-mathematics/pari-2.15.5
index d108ab37192f..a1b9faaf8af3 100644
--- a/metadata/md5-cache/sci-mathematics/pari-2.15.5
+++ b/metadata/md5-cache/sci-mathematics/pari-2.15.5
@@ -6,7 +6,7 @@ EAPI=8
 HOMEPAGE=https://pari.math.u-bordeaux.fr/
 INHERIT=flag-o-matic toolchain-funcs
 IUSE=data doc examples fltk gmp test threads X
-KEYWORDS=~alpha ~amd64 ~arm ~hppa ~mips ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux
+KEYWORDS=~alpha amd64 ~arm ~hppa ~mips ~ppc ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux
 LICENSE=GPL-2+
 RDEPEND=sys-libs/readline:0= data? ( sci-mathematics/pari-data ) doc? ( X? ( x11-misc/xdg-utils ) ) fltk? ( x11-libs/fltk:1= ) gmp? ( dev-libs/gmp:0= ) X? ( x11-libs/libX11:0= )
 REQUIRED_USE=fltk? ( !X )
@@ -14,4 +14,4 @@ RESTRICT=!test? ( test )
 SLOT=0/8
 SRC_URI=https://pari.math.u-bordeaux.fr/pub/pari/unix/pari-2.15.5.tar.gz
 _eclasses_=flag-o-matic	e503ea5acc20410237ba33ec3f7c857d	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=6ebc93c9f436d097cb1e39d4185dfb77
+_md5_=903b1e55095fe332d4fea443d1efa002