diff options
Diffstat (limited to 'sci-biology/biopython')
| -rw-r--r-- | sci-biology/biopython/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.77.ebuild (renamed from sci-biology/biopython/biopython-1.73.ebuild) | 17 |
2 files changed, 13 insertions, 8 deletions
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index f252db4b4e14..0141c7450dbb 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -1,3 +1,3 @@ -DIST biopython-1.73.tar.gz 15715102 BLAKE2B b2c40f9ed02681f19607c88f91b469784985acefc6e81770a54e5c13c715915344bc7fd72e4a88ae50879a2463965ac6d0d04c6d263908887028d1e065620b95 SHA512 d067330ef8e25ca6881b56f4e5e89e16a816c89760473e2f32a6236ab202f805294650aa944f0b098987425bcb65727317da7a26deb4d4937f02b00123ea9a8f -EBUILD biopython-1.73.ebuild 1671 BLAKE2B d899d54d6983bbbcc43e34a051cd5cfdbed4ff92d50dcc95fd38df84f60882bfdda7d95cf4a5fa84ece32e36e10e53010340cdceb2f50b37351b917afd0dc062 SHA512 3d648fe4b0a62f984fe4541c8b4298759dcf772ef0119ca7de42b207fc09994ed2c5d0b3a561fc647382c2e41f2ec1832fe388c7fdf1f8b8d83ee4565d0e20b1 +DIST biopython-1.77.tar.gz 16837021 BLAKE2B b5586f0ea3e476b11801dcc98039d5eea7b191e11d390192c0cf348018ded005fe2ad5dc9ba71c83aebc9cdde20c97244905dcc3aeb5436a97588da9f8c79c3e SHA512 6f4b03d46c591e1f49dd1e76bcc4ac5c9aaa2bf748c9dd37ffc5de5a613fbeed38f89b418c01601dd99c65b13b2e294bc8d81ffafc42a9ff1b309c84f840d0d5 +EBUILD biopython-1.77.ebuild 1855 BLAKE2B 739e5cc4a954ac9cc5fe0640ac5f418ad1ee1aadb66570a41996e8e260dc75c8c4373c94b53b0d147d1b661169c1aa3352b9367ab0e37cfd8bd05c220186ac92 SHA512 e2dd1ef79804c779645162410e6890d0618d080ac20195cae0097fe3a42c204d270321949e8d5056b85f9e9a5ed598e05c20f2869178dd16ea86ea105167271a MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/biopython/biopython-1.73.ebuild b/sci-biology/biopython/biopython-1.77.ebuild index 94acdfc2a2cb..486e9fe694d1 100644 --- a/sci-biology/biopython/biopython-1.73.ebuild +++ b/sci-biology/biopython/biopython-1.77.ebuild @@ -3,7 +3,8 @@ EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_COMPAT=( python3_{6..9} ) + inherit distutils-r1 eutils DESCRIPTION="Python modules for computational molecular biology" @@ -13,7 +14,6 @@ SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" LICENSE="HPND" SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" RDEPEND=" dev-python/matplotlib[${PYTHON_USEDEP}] @@ -23,15 +23,20 @@ RDEPEND=" dev-python/pygraphviz[${PYTHON_USEDEP}] >=dev-python/reportlab-3.5.13-r1[${PYTHON_USEDEP}] dev-python/pydot[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-python/setuptools[${PYTHON_USEDEP}] - sys-devel/flex" +DEPEND="${RDEPEND}" +BDEPEND="sys-devel/flex" DOCS=( {CONTRIB,DEPRECATED,NEWS,README}.rst Doc/. ) python_test() { distutils_install_for_testing - cp -r "${S}"/{Doc,Tests} "${TEST_DIR}"/lib/ || die + cp -r {Doc,Tests} "${TEST_DIR}"/lib/ || die + + # need to create symlinks for doctests + mkdir -p "${TEST_DIR}"/lib/Bio/Align/substitution_matrices || die + ln -r -s "${S}"/Bio/Align/substitution_matrices/data \ + "${TEST_DIR}"/lib/Bio/Align/substitution_matrices/data || die + cd "${TEST_DIR}"/lib/Tests || die rm test_BioSQL_{psycopg2.py,MySQLdb.py,mysql_connector.py} || die "${EPYTHON}" run_tests.py --offline --verbose || die |