diff options
Diffstat (limited to 'sci-biology/bwa')
-rw-r--r-- | sci-biology/bwa/Manifest | 2 | ||||
-rw-r--r-- | sci-biology/bwa/bwa-0.7.17.ebuild | 9 |
2 files changed, 8 insertions, 3 deletions
diff --git a/sci-biology/bwa/Manifest b/sci-biology/bwa/Manifest index 64d24373a5df..d3a08a8cae7a 100644 --- a/sci-biology/bwa/Manifest +++ b/sci-biology/bwa/Manifest @@ -1,5 +1,5 @@ AUX bwa-0.7.17-Makefile.patch 1341 BLAKE2B 21b566233ab5838174648a5316bc0c05ede4e3b6ecc1e8761556810d0c5bf5f026677fe8836ea397630f2c1d7ad45624bb6c5c26724fe1d072c9cd77889ae3c0 SHA512 0c4679d79c04ebcb8d86d7dc276cef390cd5260a08b37d7735b40d3aede634e3d98a8834154d3cf23903cf999abb00cf06661f912f6ada6d53f1242be7d1c140 AUX bwa-0.7.17-gcc-10.patch 228 BLAKE2B c80d2fb9f1414705881178983227d762920051597edc99cca194a041b7d4dfec4d925b872448478804fbefa6881b58851e8d1a35a24b0efbc405b72f5f31cd62 SHA512 32bb9732ab9971bf26ecdaec9d512470bc970c26d1a928edb88957a4216cad1e650f0df2b69ab0214392503bbd483eade1212ed3e799393fa076b3ecdc5d5427 DIST bwa-0.7.17.tar.gz 232593 BLAKE2B fa48aad72a47547d66c767e2e2a5aadfcfc7c77c517410812230f51a2222ee66bb04383b068036b696af0a57b04b35e97bed11e3c44793aa899a8c0807f3df5e SHA512 114e61b7cc5edcb67172d1eca7be1fa670ea33dd48b5c02c98318e254871363775c0dab327fd7ee7023200a5fedc745fa01cbe0fd9550d783f091d4df6926f48 -EBUILD bwa-0.7.17.ebuild 751 BLAKE2B b46e83d917a259affadb85c333c69821af7d54070409c5119e0d10c1a3e6136fd8fb8118f18b0e1525985b21d5d61fa00ecb3988403c42a4fd02eea5513eb5f7 SHA512 fb8c1d63bcb526c37795fa315dd4bbb8ffeb2bd6634f43ac82e1352416ffddddd44e38fcd7ec0a0608fd33143176618a418cbeb5b346f12e64172f071cf00d0d +EBUILD bwa-0.7.17.ebuild 881 BLAKE2B 3e7ffa40c7c8fc46b0ed39e5576ca0a7c1e6b6edbb1360803e3677fd7d3fa83e5d103c697c1beab095ceb6b1a66d8f971da7d206e69a6721114f8679a1d33309 SHA512 fde531dffc47c7e341cede8785e31769bb561c30d7c15c8cd1396ae5477651cc4ae04a9842edbceb9e8368dd916ea575337683194456afa248c77d2a7e6255a9 MISC metadata.xml 386 BLAKE2B 806a9423225c62d01adb9e64b867442b3e99c71f8847cf42d170ab2663ffa451b443a42f412eb4d6c932c1a5278873ec78e423473de76db19b51ccc296bb909b SHA512 40052cfd404f45f728a2b4dad8bac03a58557899b159aa79c9440cd95a62674be6a13df0f3f7cc20bae3c3833483c01edaabfe7b4b936a2e52810b23e139d891 diff --git a/sci-biology/bwa/bwa-0.7.17.ebuild b/sci-biology/bwa/bwa-0.7.17.ebuild index 3da06fd74f92..e1b6dbb6184e 100644 --- a/sci-biology/bwa/bwa-0.7.17.ebuild +++ b/sci-biology/bwa/bwa-0.7.17.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2024 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -inherit toolchain-funcs +inherit flag-o-matic toolchain-funcs DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner" HOMEPAGE="https://github.com/lh3/bwa/" @@ -25,6 +25,11 @@ PATCHES=( DOCS=( NEWS.md README-alt.md README.md ) src_configure() { + # -Werror=lto-type-mismatch + # https://bugs.gentoo.org/862255 + # https://github.com/lh3/bwa/issues/411 + filter-lto + tc-export CC AR } |