diff options
Diffstat (limited to 'sci-biology/dialign2')
| -rw-r--r-- | sci-biology/dialign2/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/dialign2/dialign2-2.2.1.ebuild | 29 | ||||
| -rw-r--r-- | sci-biology/dialign2/files/dialign2-2.2.1-fix-build-system.patch | 46 |
3 files changed, 64 insertions, 14 deletions
diff --git a/sci-biology/dialign2/Manifest b/sci-biology/dialign2/Manifest index ae948999dfa1..4b256f8e8838 100644 --- a/sci-biology/dialign2/Manifest +++ b/sci-biology/dialign2/Manifest @@ -1,3 +1,4 @@ +AUX dialign2-2.2.1-fix-build-system.patch 819 BLAKE2B c639532a8bc95744c91f07f0e672255110b31e2964bb8bfbacaa6b401dcee6a10e29199d9a19614f690a610109c2a5f0ab785b66c144373ceb4724112182cab2 SHA512 8a85911d1743c186f3dea402333e502cfd4f7807065277a2657d790ab9cf1c8d535fbb25abf994f83cdab9849d4ec203d8db8198cf10fa91996d61b63d98f807 DIST dialign-2.2.1-src.tar.gz 209015 BLAKE2B daf903b735e164879a8ceb998ca5ea0c5243927d9b88b4041633af06da7d1f608d58933ee098393e99093b7d11587a59277d9d0927214df0341a8a623b0d5608 SHA512 eb51fbc8d81e384ac19e9cc957be233287a1d81a7f020d77ab16ee6943382bd4e81099c0c9028fcff130def62cdf19de59e9a9c08ea4cb67b9d8f1939eb3bc45 -EBUILD dialign2-2.2.1.ebuild 756 BLAKE2B 32e2636c7df60a877c1c1f84f9ec83d41f8a15d293b5a91808790b613ae5b0be4b09c562b4ed4be47cc5839a79259b05af66abc3056fc519d597b29e0e56db95 SHA512 ead9440fc5b4bbbed8ca6b6dd39ac57dfe8da4d2556c864ecddaf2b2f94589c95fd5fe82fc6ce45cab11eb8a197324b5cc89d38b0ca2c4f10741c3639799bbc3 +EBUILD dialign2-2.2.1.ebuild 836 BLAKE2B abb98cbbfcfe09ead711558bb07b41dcd79aa706793d1aadff9eb258daac8bd42ccbef2fbb74602b0e71bc99aa863a749b0239d63c23edc78982116e4febcf0e SHA512 6714a835544683e1b135ee65aa0728e1f2943349358b4d1505c583f1beba3b4210f3fdec01625ef8bf7a92605274f47233e7ce630cd9a2996e77a098d1990e51 MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/dialign2/dialign2-2.2.1.ebuild b/sci-biology/dialign2/dialign2-2.2.1.ebuild index 13ce733d8a79..db310e3fe8d3 100644 --- a/sci-biology/dialign2/dialign2-2.2.1.ebuild +++ b/sci-biology/dialign2/dialign2-2.2.1.ebuild @@ -1,34 +1,37 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=6 -inherit toolchain-funcs +inherit flag-o-matic toolchain-funcs DESCRIPTION="Multiple sequence alignment" HOMEPAGE="http://bibiserv.techfak.uni-bielefeld.de/dialign" -SRC_URI="http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz" +SRC_URI="http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-${PV}-src.tar.gz" -SLOT="0" LICENSE="LGPL-2.1" +SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" -S="${WORKDIR}"/dialign_package +S=${WORKDIR}/dialign_package +PATCHES=( "${FILESDIR}"/${PN}-2.2.1-fix-build-system.patch ) + +src_configure() { + tc-export CC + append-cppflags -I. -DCONS +} src_compile() { - emake -C src \ - CC="$(tc-getCC)" \ - CFLAGS="${CFLAGS} -I. -DCONS -c" + emake -C src } src_install() { dobin src/${PN}-2 insinto /usr/share/${PN} - doins dialign2_dir/* + doins -r dialign2_dir/. - cat >> "${T}"/80${PN} <<- EOF - DIALIGN2_DIR="${EPREFIX}/usr/share/${PN}" + cat >> "${T}"/80${PN} <<- EOF || die + DIALIGN2_DIR="${EPREFIX}/usr/share/${PN}" EOF doenvd "${T}"/80${PN} } diff --git a/sci-biology/dialign2/files/dialign2-2.2.1-fix-build-system.patch b/sci-biology/dialign2/files/dialign2-2.2.1-fix-build-system.patch new file mode 100644 index 000000000000..45365c56e3a4 --- /dev/null +++ b/sci-biology/dialign2/files/dialign2-2.2.1-fix-build-system.patch @@ -0,0 +1,46 @@ +--- a/src/makefile ++++ b/src/makefile +@@ -10,8 +10,6 @@ + ############################### + + +-CC = gcc +-CFLAGS = -c -O -I$ -DCONS + #CFLAGS = -g -c -I$ -DCONS + LIBS = -lm + # +@@ -23,33 +21,4 @@ + + # + dialign2-2: $(OBJS) +- $(CC) $(OBJS) $(LIBS) -o dialign2-2 +-# $(CC) -g $(OBJS) $(LIBS) -o dialign2-2_db +-# +-# +-# Subroutines +-# +- +-dialign.o: dialign.c +- $(CC) $(CFLAGS) dialign.c +-functions.o: functions.c +- $(CC) $(CFLAGS) functions.c +-input.o: input.c +- $(CC) $(CFLAGS) input.c +-frag_chain.o: frag_chain.c +- $(CC) $(CFLAGS) frag_chain.c +-para.o: para.c +- $(CC) $(CFLAGS) para.c +-output.o: output.c +- $(CC) $(CFLAGS) output.c +-wgt.o: wgt.c +- $(CC) $(CFLAGS) wgt.c +-regex.o: regex.c +- $(CC) $(CFLAGS) regex.c +-anchor.o: anchor.c +- $(CC) $(CFLAGS) anchor.c +- +-# +- +- +- ++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $^ $(LIBS) |