diff options
Diffstat (limited to 'sci-biology/embassy-signature')
4 files changed, 132 insertions, 0 deletions
diff --git a/sci-biology/embassy-signature/Manifest b/sci-biology/embassy-signature/Manifest new file mode 100644 index 000000000000..70ea7d7dabe5 --- /dev/null +++ b/sci-biology/embassy-signature/Manifest @@ -0,0 +1,6 @@ +AUX embassy-signature-0.1.650_fix-build-system.patch 2860 SHA256 768fe1c2740827007d475f31451195090032b907e0ed5b36b9201504d6eb4df2 SHA512 54a6027b2fb1d17eff98b7c1e9adc61578a2845b30be3b7c40551b4291950ce11900798dbf7d54e1fc9421743a8d313fc42a14cfa39976735ac8cfae5a297954 WHIRLPOOL a272e7679d14c883fb76d83e78e429582c776364c590738f4bb6b3e793f54c95bd0bb42b263fc6ca5569a34a9be2e84a2dc62cb67efe05ad451ac0513102c2d8 +DIST embassy-signature-0.1.660.tar.gz 622294 SHA256 2ab34cc76caaaefe7914e9b00dd12ee81a32d7a7ccca20ba901d67f1e2c2f27e SHA512 4989693b17c29ece16f94934e1b2f5e62f31c345bc8cbac938450db0d8f5d56ae37be6090c46e96725e63621c5951f8a65461cd36d4aafb1b509f3f554b4e952 WHIRLPOOL 1a943266ee9092f13fb3ad0779cdfe70e3cb5c1ed7d31164a93da90aaea2df95150970e0ef22df89c3cc97dfe7564092f2cab8aad7fb720e2f456cb363666de3 +EBUILD embassy-signature-0.1.660.ebuild 337 SHA256 f6f54e84e70866656557e64974fc3d6773e9c62a3541e4e94e254446e14cdafa SHA512 ce592d367c64428911a735a5ecc3a24000a5b1e8c3b3fcaf466e5005a962deaf113416cd161039eb445a1a41f7296ca7376531396bed019047c0d97c86296585 WHIRLPOOL f0c8b7d716026c97fc01f50ece571de4d13c522832c1e2f65aa1f57cc7ac0a3ada05ded0996f2822e31141cf5be19779ae4c928ef947c6e7749145775d8be929 +MISC ChangeLog 3722 SHA256 535090c557eb13db1501c464a1ca480e81081ac6a447d8f9b60898fff0aac43f SHA512 21cf306716bc2071f5344c7e7a89380eaaeb696d4689fcc4e26844f50f0ab170806cee5949896d6365a86f21dbdf16517e6eec6c03720726192b3ec58b685d62 WHIRLPOOL a4e86701782c8a8f9f557d979f9d6ea383df0c95438843623b295740aa81776af5af7c3314374aa76c08e936e5e511b20c9198a1090bbebaf4ff7af5270b4428 +MISC ChangeLog-2015 3864 SHA256 27b743af18ee8d2fc1420f1dcb7aba01c65211fb4c7ac965a2926f141fa8428a SHA512 220fd9e7da3a4c4a306631d4460b39431de1e5d29af32257071e0cb35c680541eea139825c5bfe1760e7313df2b4695b2cbe7850fe2fc916f3cb50c66cfd50e3 WHIRLPOOL a1596d167902201f0fc6f735186372d6c0f5de529106f524af11bfb8de08e9d1dc518a0984936c4873f03d062a43b6e5a168ea2eba10a16edcaf83cced3fdfd1 +MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b diff --git a/sci-biology/embassy-signature/embassy-signature-0.1.660.ebuild b/sci-biology/embassy-signature/embassy-signature-0.1.660.ebuild new file mode 100644 index 000000000000..c0ea3e302504 --- /dev/null +++ b/sci-biology/embassy-signature/embassy-signature-0.1.660.ebuild @@ -0,0 +1,15 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +EBO_DESCRIPTION="Protein signature add-on package" + +EBO_EAUTORECONF=1 + +inherit emboss-r2 + +KEYWORDS="~amd64 ~x86 ~x86-linux" + +S="${WORKDIR}/SIGNATURE-0.1.650" +PATCHES=( "${FILESDIR}"/${PN}-0.1.650_fix-build-system.patch ) diff --git a/sci-biology/embassy-signature/files/embassy-signature-0.1.650_fix-build-system.patch b/sci-biology/embassy-signature/files/embassy-signature-0.1.650_fix-build-system.patch new file mode 100644 index 000000000000..32e4d684cbb3 --- /dev/null +++ b/sci-biology/embassy-signature/files/embassy-signature-0.1.650_fix-build-system.patch @@ -0,0 +1,100 @@ + configure.ac | 49 +++++++------------------------------------------ + src/Makefile.am | 6 ++---- + 2 files changed, 9 insertions(+), 46 deletions(-) + +diff --git a/configure.ac b/configure.ac +index 2f5ddd0..827543f 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -635,33 +635,6 @@ AS_CASE([${host_os}], + + + +-dnl PCRE library definitions - see the MAJOR and MINOR values +-dnl to see which version's configure.in these lines come from +- +-dnl Provide the current PCRE version information. Do not use numbers +-dnl with leading zeros for the minor version, as they end up in a C +-dnl macro, and may be treated as octal constants. Stick to single +-dnl digits for minor numbers less than 10. There are unlikely to be +-dnl that many releases anyway. +- +-PCRE_MAJOR="7" +-PCRE_MINOR="9" +-PCRE_DATE="11-Apr-2009" +-PCRE_VERSION="${PCRE_MAJOR}.${PCRE_MINOR}" +- +-dnl Default values for miscellaneous macros +- +-POSIX_MALLOC_THRESHOLD="-DPOSIX_MALLOC_THRESHOLD=10" +- +-dnl Provide versioning information for libtool shared libraries that +-dnl are built by default on Unix systems. +- +-PCRE_LIB_VERSION="0:1:0" +-PCRE_POSIXLIB_VERSION="0:0:0" +- +- +- +- + dnl FIXME: This does no longer seem required with Autoconf 2.67? + dnl Intel MacOSX 10.6 puts X11 in a non-standard place + dnl AS_IF([test "x${with_x}" != "xno"], +@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL + + + +-dnl "Export" these variables for PCRE +- +-AC_SUBST([HAVE_MEMMOVE]) +-AC_SUBST([HAVE_STRERROR]) +-AC_SUBST([PCRE_MAJOR]) +-AC_SUBST([PCRE_MINOR]) +-AC_SUBST([PCRE_DATE]) +-AC_SUBST([PCRE_VERSION]) +-AC_SUBST([PCRE_LIB_VERSION]) +-AC_SUBST([PCRE_POSIXLIB_VERSION]) +-AC_SUBST([POSIX_MALLOC_THRESHOLD]) +- +- +- +- + dnl Test if --enable-localforce given + locallink="no" + embprefix="/usr/local" +@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs], + AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) + + ++AS_IF([test "x${enable_systemlibs}" = "xyes"], ++[ ++dnl using system libraries ++ PKG_CHECK_MODULES([PLPLOT], [plplotd], ++ [],[PKG_CHECK_MODULES([PLPLOT], [plplot])] ++ ) ++]) + + + # Enable the purify tool: --enable-purify, sets CC and LIBTOOL +diff --git a/src/Makefile.am b/src/Makefile.am +index d77e43c..849f17a 100644 +--- a/src/Makefile.am ++++ b/src/Makefile.am +@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \ + -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ + -I../../../ajax/acd -I../../../plplot + else +-AM_CPPFLAGS = -I${embprefix}/include -I${embprefix}/include/eplplot \ +- $(NLINCLUDES) \ +- -I${embprefix}/include/epcre ++AM_CPPFLAGS = -I${embprefix}/include $(NLINCLUDES) $(PLPLOT_CFLAGS) + endif + + if ISSHARED +@@ -68,5 +66,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \ + $(XLIB) + else + LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ +- -lajax -lepcre $(NLADD) -leplplot $(XLIB) ++ -lajax $(NLADD) $(XLIB) + endif diff --git a/sci-biology/embassy-signature/metadata.xml b/sci-biology/embassy-signature/metadata.xml new file mode 100644 index 000000000000..d1b9a7602ec2 --- /dev/null +++ b/sci-biology/embassy-signature/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="sourceforge">emboss</remote-id> + </upstream> +</pkgmetadata> |