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-rw-r--r--sci-biology/repeatmasker/Manifest3
-rw-r--r--sci-biology/repeatmasker/metadata.xml8
-rw-r--r--sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild58
3 files changed, 0 insertions, 69 deletions
diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest
deleted file mode 100644
index d43f4216b5ad..000000000000
--- a/sci-biology/repeatmasker/Manifest
+++ /dev/null
@@ -1,3 +0,0 @@
-DIST RepeatMasker-open-4-0-1.tar.gz 84077910 BLAKE2B 45598d46ef1c0e1233ed5ce10c2d29e4b2ef1a6843846970df2d0f997a22657eeed7dd7c851418d6f751468b22327b47f3b72105fdcfa56bbebe97395946ab37 SHA512 6b710a02b2964bca6acb25cc918bd56f7caba7b80b3b683972f0584180bf0fd3704f657d7ee341187a4ac86d9883e62eb4f09da237fa8ef1b481137d1a89963e
-EBUILD repeatmasker-4.0.1.ebuild 1501 BLAKE2B c8a6bef25b5e9cfbf4be2d5336b7b9960872c16368c470dd720be2a76529e894077ee2875999cfbce66b954f3ec059de0a9e98e605e3c4b17338f520a43580f2 SHA512 a90a31bd066e05384f6583a04f2e8bb4624f84e2125b25eebc3b253ceca1e9bf1090e11ddbdda824f1e9a939b4fbe8f900335e14c6604d1f947ab6083191df5d
-MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de
diff --git a/sci-biology/repeatmasker/metadata.xml b/sci-biology/repeatmasker/metadata.xml
deleted file mode 100644
index ccdff086e20b..000000000000
--- a/sci-biology/repeatmasker/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild b/sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild
deleted file mode 100644
index bf6097df1f68..000000000000
--- a/sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-MY_PV=${PV//\./-}
-
-DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
-HOMEPAGE="http://repeatmasker.org/"
-SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
-
-LICENSE="OSL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="
- sci-biology/rmblast
- sci-biology/trf
- sci-biology/repeatmasker-libraries"
-
-S="${WORKDIR}/RepeatMasker"
-
-src_configure() {
- sed -i -e 's/system( "clear" );//' \
- -e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|' "${S}/configure" || die
- echo "
-env
-/usr/share/${PN}
-/usr/bin
-2
-/opt/rmblast/bin
-Y
-5" | "${S}/configure" || die "configure failed"
- sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' \
- -e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' \
- -e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' \
- "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
-}
-
-src_install() {
- exeinto /usr/share/${PN}
- for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do
- doexe $i
- dosym /usr/share/${PN}/$i /usr/bin/$i
- done
-
- dodir /usr/share/${PN}/lib
- insinto /usr/share/${PN}/lib
- doins "${S}"/*.pm
-
- insinto /usr/share/${PN}
- doins -r util Matrices Libraries taxonomy.dat *.help
- keepdir /usr/share/${PN}/Libraries
-
- dodoc README INSTALL *.help
-}