diff options
Diffstat (limited to 'sci-biology/sibsim4')
| -rw-r--r-- | sci-biology/sibsim4/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch | 26 | ||||
| -rw-r--r-- | sci-biology/sibsim4/sibsim4-0.20.ebuild | 19 |
3 files changed, 33 insertions, 15 deletions
diff --git a/sci-biology/sibsim4/Manifest b/sci-biology/sibsim4/Manifest index fc049c6f28a9..805e39d3ab00 100644 --- a/sci-biology/sibsim4/Manifest +++ b/sci-biology/sibsim4/Manifest @@ -1,3 +1,4 @@ +AUX sibsim4-0.20-makefile.patch 603 BLAKE2B 1d5bf536aec1c8d6716a2feeefc19d9397c8a8446899d40bdc58abe577ed5b4e7234b21bd428a831fcccd9ed0cdf6da70e9fda0db3070e3d51506b91b4324d01 SHA512 d434cf369ec418e29df7d34b139acf06182d84d1e83a7aaafe2d5df2ee49884ff86ad7fd5b6697108e7d1dea865652c8755459ff4ec0ae6395b1ec8c46126e55 DIST SIBsim4-0.20.tar.gz 32118 BLAKE2B 79b1f080d547732ee6a5996885c26f422f8a1590fa37d525f35cfa3dee353fd36ce9aa4677fe7e570f43e8283c26541c8c9e76ca03788a66d1c356adb3d649d5 SHA512 3802520095e83d3c691804b661696095a4198c4b2a16385c55ccdc8e4e836f82cc9c2251a5d37cb5918c2ee80aeb81737d751e6b065fbfe9c64f1aee3e0ea0c8 -EBUILD sibsim4-0.20.ebuild 639 BLAKE2B fa9d2b944f158ce6fea94566603e796a58f12fbdff8d94057f6e378bbd7e2cc251a7b38047af227284630157e9dd917128c852738f91a5bbfea79b3bad1aa4e3 SHA512 ef670faca5998f05252622a170e9faa3748b55a10af9a0556a49ef912cdd2e1d985100001846033da0708479112321557a34fb20ccb1b3e82149a79b2da92195 +EBUILD sibsim4-0.20.ebuild 518 BLAKE2B 0999e252ed6713e462f04dfa6d1ee0c48982ff614b54aa4126fae1ab4bcb615153abcef38806a193e32bce14daf9d7b22ff71a86d005b7c222b497dd7aff23be SHA512 903d8d9a98e31197a9018cb13d255a7ce7ca2cfc94d40f4fe8ee793ef2f8e7736907a6f37633b900b02430a842fae11e55ad1880e551807dc40e8069c2aff59f MISC metadata.xml 348 BLAKE2B 4765b3098d0a6ac9ac1f5677bc13ab1e767d4beb7d9fd02adedab808382a80ab9ad0acf994783bfbfd66fbb5c580459f569215426d713b8c385054586387012b SHA512 9628452f960b9837192126173a46e916bfa1f16421a470166ce3812d7e8d455a2f8eb5ba78ccb6f52e5d0acbbc009f31f0eabd5619bc864790c258220333aba0 diff --git a/sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch b/sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch new file mode 100644 index 000000000000..6436747e3dd9 --- /dev/null +++ b/sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch @@ -0,0 +1,26 @@ +--- a/Makefile ++++ b/Makefile +@@ -21,13 +21,12 @@ + # to change it to this: + # CFLAGS = -Xc + +-CFLAGS = -std=gnu99 -W -Wall -Wconversion -pedantic $(DEBUG) $(OPT) ++CFLAGS += -std=gnu99 -Wall -Wconversion -pedantic + + + # The default is GCC. On Solaris, you might put: + # CC = /opt/SUNWspro/bin/cc + +-CC = gcc + + + # Depending on the compile flags you use, you might need to explicitly use the +@@ -42,7 +41,7 @@ + OBJS = sim4b1.o align.o misc.o sim4.init.o + + sim4: $(OBJS) +- $(CC) -o SIBsim4 $(CFLAGS) $(OBJS) $(LIBS) ++ $(CC) $(CFLAGS) $(LDFLAGS) -o SIBsim4 $(OBJS) $(LIBS) + + clean: + rm -f SIBsim4 *.o diff --git a/sci-biology/sibsim4/sibsim4-0.20.ebuild b/sci-biology/sibsim4/sibsim4-0.20.ebuild index bf431c666920..679cb462e045 100644 --- a/sci-biology/sibsim4/sibsim4-0.20.ebuild +++ b/sci-biology/sibsim4/sibsim4-0.20.ebuild @@ -1,31 +1,22 @@ -# Copyright 1999-2013 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit toolchain-funcs DESCRIPTION="A rewrite and improvement upon sim4, a DNA-mRNA aligner" HOMEPAGE="http://sibsim4.sourceforge.net/" SRC_URI="mirror://sourceforge/${PN}/SIBsim4-${PV}.tar.gz" +S="${WORKDIR}/SIBsim4-${PV}" LICENSE="GPL-2" SLOT="0" -IUSE="" KEYWORDS="amd64 x86" -DEPEND="" -RDEPEND="" - -S="${WORKDIR}/SIBsim4-${PV}" +PATCHES=( "${FILESDIR}"/${P}-makefile.patch ) -src_prepare() { - sed \ - -e 's/CFLAGS = /CFLAGS +=/' \ - -e '/^CC/s:=:?=:' \ - -e '/^OPT/d' \ - -e "s:-o:${LDFLAGS} -o:g" \ - -i "${S}/Makefile" || die +src_configure() { tc-export CC } |