diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/Manifest.gz | bin | 19013 -> 19016 bytes | |||
| -rw-r--r-- | sci-biology/amap/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/amap/amap-2.2-r5.ebuild | 59 |
3 files changed, 0 insertions, 60 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz Binary files differindex 621896d2b335..3cd5396be933 100644 --- a/sci-biology/Manifest.gz +++ b/sci-biology/Manifest.gz diff --git a/sci-biology/amap/Manifest b/sci-biology/amap/Manifest index 269b2ea31c9d..13fa0fcaf898 100644 --- a/sci-biology/amap/Manifest +++ b/sci-biology/amap/Manifest @@ -1,6 +1,5 @@ AUX amap-2.2-includes.patch 1088 BLAKE2B 3b870c229f3efb9819d9f176b59b014ad4bae3034ed4fe9f8c8474ebf8ce7c8373efef66c3c61c8f6fe04a645243f09639aa4a4c95ee75f692e504f4478fcf77 SHA512 e9c2ae7ea75f059b816a8562c9ac79e343d73b9a3d63ac1182fe41b3634bf0b949738a4bdd90c09f61bb4505a721e2faa98334b81ad17c0d7360a2e3f37f9044 AUX amap-2.2-makefile.patch 1089 BLAKE2B 5ed09060ebc9c0c5748d1bdd1517bc6d5e7989d8125db1dff13a221f13e69e717508ac30410ae0c38a4e126f490179ac68ee7e501f7c7d61888993c850f6fbf8 SHA512 cd08a7a71eb85521c60e522d3a8ea0b2bbe4dfb93c0f4d6f0e2e4c35787a0836f23f51f50c4c9344eeda6533a7d689c4b246c700f7d37b8b3666f4904bd625d6 DIST amap.2.2.tar.gz 102861 BLAKE2B 7f9b1cb747946232db0b5b469896cc4f83ef78d190e929e28f37df790dfac342e6e7f913797bc9ff00191253318db2d42f79577dc72128d62a21d0e241bfb0e1 SHA512 a297b6eb1b52d5deab65db5bb1344b06a85c7ef6fa4b550798501041091357e605543eaadd85c053a74e857ebdd7b846dca4b226c5c61bedc329bf93c886c18f -EBUILD amap-2.2-r5.ebuild 1104 BLAKE2B 120ae0dd66942b77dc7acc28d05b6f76c9dc1152dea85b419f2a84cab1a7ef2be373575bdd0f0edabfba1765c3a4db83b699c25ae0855c7e162d19d13f6b404f SHA512 60ad29cc9bb1698ff04eec6fa719f66a9fe0ebc57698f6986abc7b401a4781248140a73d36828d9592dae3176148fc0ee27e6baf0d302e461387b13b98ff9530 EBUILD amap-2.2-r6.ebuild 1081 BLAKE2B abfa680a1d4f14cbb4fcffb646a781d59ad65022f0f75257e372cd0ca49e4de33da02447dbc7312f6c62a2ae561dfdc4ad406e546c84ecfe5ed790eceb440cf8 SHA512 df5007ef8960c066b9b6b49a2d2272b959d81a70835173afc1c456154d4b6394720e974db756f0e67fa78f661f2c8c403cf0dc1a74ce11fc995da661ff13cc37 MISC metadata.xml 258 BLAKE2B 51009df26b3682090e316b4cf4a3afad84001705063be6c74a28fb11bacde48b758dc280bf9d4d049c69e728d9660e737072674ad5ff8068da4f6a49f1f4e203 SHA512 05153e39b77e8b1437a0ba80b66b6bb1b4837d719765cb157b23d5425a625ddb4056422dcbf28d182e039583a0b3863e8429efe80da85a035c96f4c4788ced6d diff --git a/sci-biology/amap/amap-2.2-r5.ebuild b/sci-biology/amap/amap-2.2-r5.ebuild deleted file mode 100644 index 949749969c27..000000000000 --- a/sci-biology/amap/amap-2.2-r5.ebuild +++ /dev/null @@ -1,59 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit java-pkg-opt-2 java-ant-2 toolchain-funcs - -MY_P=${PN}.${PV} - -DESCRIPTION="Protein multiple-alignment-based sequence annealing" -HOMEPAGE="https://wiki.gentoo.org/wiki/No_homepage" -SRC_URI="http://baboon.math.berkeley.edu/${PN}/download/${MY_P}.tar.gz" -S="${WORKDIR}/${PN}-align" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="java" - -RDEPEND="java? ( >=virtual/jre-1.8:* )" -BDEPEND="${RDEPEND}" - -PATCHES=( - "${FILESDIR}"/${P}-makefile.patch - "${FILESDIR}"/${P}-includes.patch -) - -src_prepare() { - default - java-pkg-opt-2_src_prepare -} - -src_configure() { - tc-export CXX -} - -src_compile() { - emake -C align - - if use java; then - pushd display >/dev/null || die - eant -Ddisplay all || die - popd >/dev/null || die - fi -} - -src_install() { - dobin align/${PN} - - dodoc align/{README,PROBCONS.README} - - insinto /usr/share/${PN} - doins -r examples - - if use java; then - java-pkg_newjar display/AmapDisplay.jar amapdisplay.jar - java-pkg_dolauncher amapdisplay --jar amapdisplay.jar - fi -} |