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-rw-r--r--sci-chemistry/Manifest.gzbin8203 -> 8198 bytes
-rw-r--r--sci-chemistry/gromacs/Manifest14
-rw-r--r--sci-chemistry/gromacs/gromacs-2023.5.ebuild2
-rw-r--r--sci-chemistry/gromacs/gromacs-2024.5.ebuild2
-rw-r--r--sci-chemistry/gromacs/gromacs-2024.9999.ebuild2
-rw-r--r--sci-chemistry/gromacs/gromacs-2025.0.ebuild2
-rw-r--r--sci-chemistry/gromacs/gromacs-2025.1.ebuild2
-rw-r--r--sci-chemistry/gromacs/gromacs-2025.9999.ebuild2
-rw-r--r--sci-chemistry/gromacs/gromacs-9999.ebuild2
-rw-r--r--sci-chemistry/pymol/Manifest2
-rw-r--r--sci-chemistry/pymol/pymol-3.0.0-r1.ebuild4
11 files changed, 17 insertions, 17 deletions
diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index 0b1ac4f3e282..258fb9507dfb 100644
--- a/sci-chemistry/Manifest.gz
+++ b/sci-chemistry/Manifest.gz
Binary files differ
diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index dd2300378373..9cca3f744ea8 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -11,11 +11,11 @@ DIST regressiontests-2023.5.tar.gz 48619605 BLAKE2B f2549a34750c6866f054614a00a3
DIST regressiontests-2024.5.tar.gz 32776573 BLAKE2B 5e397b6c601132ac96b826325bd0304d5939b87f0edaa89ba84d672a9df27351f26dbc9fde39fdb7a177be2743db93198316663a39145231741d08f3268d67cf SHA512 8594e8365f676f18f227b4d6b87fa6a1a8ceab8301302469a626380a7d29035a2cd8667b4d923b26491d3db9298d6660a9c9bde9274dfeba278dfabdb54ef424
DIST regressiontests-2025.0.tar.gz 32653708 BLAKE2B 38d4fb66c33da1f16a8d1ed66841c9eecce900f24d8c5c7f7c26df43f35c431db9745ac1f195af7572439184a4f1d1f099f81e0a843b3ffbe6e8df0371d3bb31 SHA512 925a392926794af9067c7c385daafbd6b36b0f138d6a2354f23652b2a8f750bb9268b14d9d67579cfbacbc88543790317ec56e095bdccd9e0ed80fb9a39fd439
DIST regressiontests-2025.1.tar.gz 32653610 BLAKE2B 8301571cc10631ffa88999c56b2a30dec0543d49515193eced776ee13e10a6efa60a618100a486002b9c6deaddc0d17abd8b611cbdc49ee4dea91f722c1b73de SHA512 e104f35f83e3afeea1b47e9f54a277330a4774962ca572a0694fda49c1e8752aa80c834786eaa3d23adeee938af1203d5eb7f06134f702e500b452f580bb4701
-EBUILD gromacs-2023.5.ebuild 9808 BLAKE2B bd101d7a3f09f383cec52c396e6e0edc4e6c29a01b691763cbadc967c51918b157643ebcd9f8760771b4ea5042f15882f2bd27a340aea73ada4dd9bcb75ef28f SHA512 2ba6d3829a0b8c1e198ef6e6062543a21c24790202020a4b63819a90708b18c655f73e447e79adc5bd5f2c635a4f3dd34b79388a5ef22d3bf8f04f505e874d9d
-EBUILD gromacs-2024.5.ebuild 9861 BLAKE2B 631036fb1ce3f090d0c863a0c95db19e37464cbbd8dd0cee4e60dcfc9b13630313bcf63450aab6521927abd618f4fe315a8451110ef9e86a479ee95a913f19f7 SHA512 fcfa45fcd35f443582f74220bfb5d8556858ddeba9f2105d072ab8da95133a4445ac13d469147a44326377d1a9bd9bd843e907d1a42e7bd99f81752f4409083a
-EBUILD gromacs-2024.9999.ebuild 9817 BLAKE2B abce03519bf538e5fc7db11912b1beceafc49cfdcaba1dc9d4cc7ad6a69337789f875105b65da1cef86558f43fbdcdcae27d092825efba7b02a9b9d9644afc58 SHA512 890cc415cb0176772349650c5d90f1e3b93361bafbdb958661253bf84ee2794290566edf661ec0ea0e690872b414cd763be2f0468f82a7410d4090000c6d6221
-EBUILD gromacs-2025.0.ebuild 10375 BLAKE2B 5733ffb7cf3ca523ea0e47b8f3105a1315c98880fd2c7454dd35f5555de0b5a8a63c54a157b7446e94f478bf833bcf6ef24cf53cb01435654565ec2311a70142 SHA512 d2d1d33b56fbfc69481b01eb2954671aa8af20b057d8ecdf2a81c3acef26a1e56a37d9d53313f97d8f9ea6ca3b8e603f035217d4d7d0ef8974e0224f66ffe83a
-EBUILD gromacs-2025.1.ebuild 10375 BLAKE2B 5733ffb7cf3ca523ea0e47b8f3105a1315c98880fd2c7454dd35f5555de0b5a8a63c54a157b7446e94f478bf833bcf6ef24cf53cb01435654565ec2311a70142 SHA512 d2d1d33b56fbfc69481b01eb2954671aa8af20b057d8ecdf2a81c3acef26a1e56a37d9d53313f97d8f9ea6ca3b8e603f035217d4d7d0ef8974e0224f66ffe83a
-EBUILD gromacs-2025.9999.ebuild 10375 BLAKE2B 5733ffb7cf3ca523ea0e47b8f3105a1315c98880fd2c7454dd35f5555de0b5a8a63c54a157b7446e94f478bf833bcf6ef24cf53cb01435654565ec2311a70142 SHA512 d2d1d33b56fbfc69481b01eb2954671aa8af20b057d8ecdf2a81c3acef26a1e56a37d9d53313f97d8f9ea6ca3b8e603f035217d4d7d0ef8974e0224f66ffe83a
-EBUILD gromacs-9999.ebuild 10414 BLAKE2B 25b431748592650985d87994a47b7b210ef6906eecd6b324c6053f2103ce52e8de0084559039adbf9bd76121a4a4f736410e81c2ca0d94d4414cbdd633661d64 SHA512 b98dc55bb0d7ad90de6a7ab9329d7c883a48568c9a3d8e4c90f5eb19139cf4613f258e485385eda93205cfae9d35bd85749ed0a1b955c9883052c38fd237a869
+EBUILD gromacs-2023.5.ebuild 9808 BLAKE2B 420ace46686fcc11538814ebce2efbb6d5e8498619104528261f4124fd055906ace63cc20de76d9e18154a21cbd78e5596e1cbeeebc9da54482394d71cb33639 SHA512 b998fdb2de5be2f981fbe4c3f75cc176270ef1103802f769d7ff463bf82005af75b8e84d149a3fecd83bf8fd6518701145db64a3f4e30df119998da088d287c0
+EBUILD gromacs-2024.5.ebuild 9861 BLAKE2B 10ce405a255c44426907dd1c99bf0cb21445d88274a1effe632f7b1acb525593db9d847ecc148036909294af3456de99a6ec61b4e916dd82fe09cfa3cc89372f SHA512 e2cc6b2c7810535b06ecaf0aa42b5fb2f2dc9efb0d9b0c6ae0987675fafd8a8d8edaf0c2f2fef9cc19de75ea0f5804a7d64bfa04760de1afc98e4f98c51dc9c9
+EBUILD gromacs-2024.9999.ebuild 9817 BLAKE2B 63fb925965beca0bf5fa365dd64112190117d29bc7840b60aa0746ea1f7ea4607e02f172097d8ec54d657dcfc12e074c93bc3d9c01be515634a5fe779abf7e6a SHA512 481c94da9c0cad85144b4530a918b037bcc5ff5b75a5e5ebbc5c6b1da8a66cd3a469d251355db1798b6256ef26d20774b167c39352840f2369e39dd39be4b39b
+EBUILD gromacs-2025.0.ebuild 10375 BLAKE2B 51726962ea326e61ff498b1f0ded0fccdfd384d88bfd97fe06e9a2220db3a18014aeccf73df29032cd800dbe3debffa846ce77d1b129209812feeeea13e39153 SHA512 5a080d914a007e15e250bbdfd3d006993b577559c4a3d89dc4b7659ed37b8a3ece07c5d436e0c77381301076fd351d3e0191e3e6e71bed158451c137fd1ce7f7
+EBUILD gromacs-2025.1.ebuild 10375 BLAKE2B 51726962ea326e61ff498b1f0ded0fccdfd384d88bfd97fe06e9a2220db3a18014aeccf73df29032cd800dbe3debffa846ce77d1b129209812feeeea13e39153 SHA512 5a080d914a007e15e250bbdfd3d006993b577559c4a3d89dc4b7659ed37b8a3ece07c5d436e0c77381301076fd351d3e0191e3e6e71bed158451c137fd1ce7f7
+EBUILD gromacs-2025.9999.ebuild 10375 BLAKE2B 51726962ea326e61ff498b1f0ded0fccdfd384d88bfd97fe06e9a2220db3a18014aeccf73df29032cd800dbe3debffa846ce77d1b129209812feeeea13e39153 SHA512 5a080d914a007e15e250bbdfd3d006993b577559c4a3d89dc4b7659ed37b8a3ece07c5d436e0c77381301076fd351d3e0191e3e6e71bed158451c137fd1ce7f7
+EBUILD gromacs-9999.ebuild 10414 BLAKE2B c417d341e99cbbde13d5728d877397eb335fcba8049b5f0913f83966614556fc423efb472c56771761aa04da01b9fb27fec2a00524aacddf403a30e69e3579cb SHA512 14b3be6725cc3b57692949e6d55cf0b02e95ed8fcaaeb51149cee9742cd1bb34e1a46bc2b77f06a09f0a88eee1bb583c86eecf14a4c8dee4b44f537daafb9858
MISC metadata.xml 1392 BLAKE2B 675b9b5aa7db0f4d3dccc42c8f35fe106614a20b54193c8e5614479e38938bedd421541c6f0c90f4c44575b218e861d2442b4f313e7bb946d8e4c65c45bcf5b0 SHA512 72d0797179ace84dcffae4da809748c9ad1f7657f71f0a9ca821d7e281ae6719202b4c083dc20da2dc8ee345613da0682cb3df6c3926c07c9bfdc522b2a7f385
diff --git a/sci-chemistry/gromacs/gromacs-2023.5.ebuild b/sci-chemistry/gromacs/gromacs-2023.5.ebuild
index 4501472b953b..f03f755e3934 100644
--- a/sci-chemistry/gromacs/gromacs-2023.5.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2023.5.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{11..12} )
+PYTHON_COMPAT=( python3_{11..13} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
diff --git a/sci-chemistry/gromacs/gromacs-2024.5.ebuild b/sci-chemistry/gromacs/gromacs-2024.5.ebuild
index d57a37462c1d..0c8526589cc4 100644
--- a/sci-chemistry/gromacs/gromacs-2024.5.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2024.5.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{11..12} )
+PYTHON_COMPAT=( python3_{11..13} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
diff --git a/sci-chemistry/gromacs/gromacs-2024.9999.ebuild b/sci-chemistry/gromacs/gromacs-2024.9999.ebuild
index e30a7a974d56..0cbd6c6a890c 100644
--- a/sci-chemistry/gromacs/gromacs-2024.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2024.9999.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{11..12} )
+PYTHON_COMPAT=( python3_{11..13} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
diff --git a/sci-chemistry/gromacs/gromacs-2025.0.ebuild b/sci-chemistry/gromacs/gromacs-2025.0.ebuild
index 8cff5c057efa..b8f9ffbc8f82 100644
--- a/sci-chemistry/gromacs/gromacs-2025.0.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2025.0.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{11..12} )
+PYTHON_COMPAT=( python3_{11..13} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
diff --git a/sci-chemistry/gromacs/gromacs-2025.1.ebuild b/sci-chemistry/gromacs/gromacs-2025.1.ebuild
index 8cff5c057efa..b8f9ffbc8f82 100644
--- a/sci-chemistry/gromacs/gromacs-2025.1.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2025.1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{11..12} )
+PYTHON_COMPAT=( python3_{11..13} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
diff --git a/sci-chemistry/gromacs/gromacs-2025.9999.ebuild b/sci-chemistry/gromacs/gromacs-2025.9999.ebuild
index 8cff5c057efa..b8f9ffbc8f82 100644
--- a/sci-chemistry/gromacs/gromacs-2025.9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-2025.9999.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{11..12} )
+PYTHON_COMPAT=( python3_{11..13} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
diff --git a/sci-chemistry/gromacs/gromacs-9999.ebuild b/sci-chemistry/gromacs/gromacs-9999.ebuild
index 0ba977773a31..49e15a346201 100644
--- a/sci-chemistry/gromacs/gromacs-9999.ebuild
+++ b/sci-chemistry/gromacs/gromacs-9999.ebuild
@@ -5,7 +5,7 @@ EAPI=8
CMAKE_MAKEFILE_GENERATOR="ninja"
-PYTHON_COMPAT=( python3_{11..12} )
+PYTHON_COMPAT=( python3_{11..13} )
DISTUTILS_OPTIONAL=1
DISTUTILS_USE_PEP517=no
diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest
index 483bb56c226e..5773f3ca4a9f 100644
--- a/sci-chemistry/pymol/Manifest
+++ b/sci-chemistry/pymol/Manifest
@@ -5,5 +5,5 @@ AUX pymol-3.0.0-lto-molfile-plugin.patch 5585 BLAKE2B d9cedbb270184d562373fc9e8a
AUX pymol-3.0.0-numpy2.patch 1203 BLAKE2B bd06e70fea5a9a4940ecea226f2bd8d1f4753826ee246d6d418cd473c0ee738b9373c8f6e2f5e56e3708ab2934486286d43c33441e1e97f819c6ac0af731d060 SHA512 2c9445f013383fb534dca4306fa5f8ab8f55b33ed4bc53617e7765cb708a4ebc5380f8578ea1236f61e9e77a6d5a8e21588f7f081f6d6408195b9fa5b67c60b2
AUX pymol-3.0.0-py3.12-progress.patch 985 BLAKE2B 77103dc94b2e9e304f65e429f5abb1cd2158d95a0b8b53e90d7e915b213a934ea8a598240355437b00cf95e0203c382d003034fa30a37dc00758351d13163e38 SHA512 ff7b75402a92d491145e1487fa018182a2a5a91f1736c63d07a194e6710d425f1bba59a7b4f0f49321e27db8c05e26feda7df12f42a66b1e1cdbf1e52f869a5b
DIST pymol-3.0.0.tar.gz 29510174 BLAKE2B b67818e408045e386e44a203f29cd94a0ce34ec706776d29f78f1720bdc5c79d88f3b3e178882295b5a636d97fe70ff49eb1b021a9a6b96f0f4216bc392219d1 SHA512 eab05a46220339a05d8d4facdce6bfa08c6fc8a858a7b228236ef6c4054207059ef0f53a26bedebe4084a74b510015937fb4477f99612b21412cd75bf0c376a2
-EBUILD pymol-3.0.0-r1.ebuild 3373 BLAKE2B dcc30e9c9604b4572aaacbe3cab839874b6a76374b04cdad2131095dd3e5b4bf2a478e41c0357ecedec0427814002bae3b064b9591555a800aac175c4d615eb5 SHA512 7d9e6861bba0891e6f568ddc1a14f00f9a99725398e1b238a160ad6800e5d1d03eab72e583de285c17b110f686a532243060a7e3a31ec1c9ab29d06a9018bfd0
+EBUILD pymol-3.0.0-r1.ebuild 3373 BLAKE2B 80aceae465ef78dbd0cb0f43363d2077ccbc76fda0b3265ced31d2e4a449bf8f2612c960efd370451d3a0518ff791c191f29f789bf718910b1e7b0230f40a3dd SHA512 022a632b7228177ec6c1494d8a3c05fb4719247acde5019c20f88d87a075016b89f0a4f063c4b55cac9d00734cc9b877862a6c82560c5bad2e1bec41b93d3568
MISC metadata.xml 495 BLAKE2B 32d321e92c7e7c226747660c314f5cff9aabf9ee41c8a864064432ac9554879db7bf60640993dadae6e00a9b7d1367cb8ab228b63b8797ca84e5618eeeb192cc SHA512 36ef956d111c76182c70c81a830885f540fb2710f696b2711837d4bf1055a8792226f38b827f389a3a3861f259bae1394d6da50c2b33a0ddb4e6940262e1b25d
diff --git a/sci-chemistry/pymol/pymol-3.0.0-r1.ebuild b/sci-chemistry/pymol/pymol-3.0.0-r1.ebuild
index ff2b8174eeb4..a352b9586b22 100644
--- a/sci-chemistry/pymol/pymol-3.0.0-r1.ebuild
+++ b/sci-chemistry/pymol/pymol-3.0.0-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2024 Gentoo Authors
+# Copyright 1999-2025 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
-PYTHON_COMPAT=( python3_{10..12} )
+PYTHON_COMPAT=( python3_{11..13} )
DISTUTILS_USE_PEP517="setuptools"
DISTUTILS_EXT=1