1 files changed, 0 insertions, 71 deletions
diff --git a/sci-libs/libmems/files/libmems-1.6_p1-gcc-4.7.patch b/sci-libs/libmems/files/libmems-1.6_p1-gcc-4.7.patch
deleted file mode 100644
index ec620ebb35aa..000000000000
--- a/sci-libs/libmems/files/libmems-1.6_p1-gcc-4.7.patch
+++ /dev/null
@@ -1,71 +0,0 @@
- libMems/CompactGappedAlignment.h | 36 ++++++++++++++++++------------------
- 1 file changed, 18 insertions(+), 18 deletions(-)
-
-diff --git a/libMems/CompactGappedAlignment.h b/libMems/CompactGappedAlignment.h
-index bf78477..942d4aa 100644
---- a/libMems/CompactGappedAlignment.h
-+++ b/libMems/CompactGappedAlignment.h
-@@ -13,7 +13,7 @@
- #include "config.h"
- #endif
- 
--#include "libGenome/gnDebug.h"
-+#include "libGenome/gnDebug.h"
- #include "libGenome/gnFilter.h"
- #include "libGenome/gnSequence.h"
- #include "libMems/SparseAbstractMatch.h"
-@@ -103,15 +103,15 @@ public:
- 	/** Eliminates any columns that contain only gap characters */
- 	void CondenseGapColumns();
- 
--	void swap( CompactGappedAlignment& other ){ swap(&other); }
--
--protected:
--	// for use by derived classes in order to swap contents
--	void swap( CompactGappedAlignment* other ){
--		std::swap( align_matrix, other->align_matrix );
--		std::swap( bcount, other->bcount );
--		BaseType::swap( other );
--	}
-+	void swap( CompactGappedAlignment& other ){ swap(&other); }
-+
-+protected:
-+	// for use by derived classes in order to swap contents
-+	void swap( CompactGappedAlignment* other ){
-+		std::swap( align_matrix, other->align_matrix );
-+		std::swap( bcount, other->bcount );
-+		BaseType::swap( other );
-+	}
- 
- 	std::vector< bitset_t > align_matrix;		/**< aligned positions have true values, gaps are false */
- 	std::vector< std::vector< size_t > > bcount;
-@@ -572,7 +572,7 @@ void CompactGappedAlignment<BaseType>::CropEnd(gnSeqI crop_amount){
- 			this->SetStart(i, 0);
- 		}
- 	}
--	SetAlignmentLength( this->AlignmentLength() - crop_amount );
-+	this->SetAlignmentLength( this->AlignmentLength() - crop_amount );
- 	this->create_bitcount();
- 	if( !this->validate() )
- 		std::cerr << "CropEnd error\n";
-@@ -806,13 +806,13 @@ void CompactGappedAlignment<BaseType>::CondenseGapColumns()
- 
- }
- 
--namespace std {
--template<> inline
--void swap( mems::CompactGappedAlignment<>& a, mems::CompactGappedAlignment<>& b )
--{
--	a.swap(b);
--}
--}
-+namespace std {
-+template<> inline
-+void swap( mems::CompactGappedAlignment<>& a, mems::CompactGappedAlignment<>& b )
-+{
-+	a.swap(b);
-+}
-+}
- 
- 
- #endif // __CompactGappedAlignment_h__