diff options
Diffstat (limited to 'sci-libs')
173 files changed, 713 insertions, 6382 deletions
diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz Binary files differindex c4092bea9936..16fd314df567 100644 --- a/sci-libs/Manifest.gz +++ b/sci-libs/Manifest.gz diff --git a/sci-libs/amd/Manifest b/sci-libs/amd/Manifest index 0d258d6db8d7..6102e828f628 100644 --- a/sci-libs/amd/Manifest +++ b/sci-libs/amd/Manifest @@ -1,3 +1,5 @@ +AUX amd-2.4.6-dash_doc.patch 488 BLAKE2B ed5872a7b0a2dc90bf69a2c74db9dc9379afd54831c87ce4ba577a3d70f2a5f2cdcda1a8ea2b1932974c18a45ab6b8043d0de8217054464881476c2041ca1e29 SHA512 7ac31c0b64b3986c6c6e44babe326c385eacb8a4a5c542ea1e7bf8b566eceb3e70a3d3cdf48a783507c9ecc1b21b53487523838d8f2936e0d2cbae688e30bee2 DIST amd-2.4.6.tar.bz2 343925 BLAKE2B 296579d888b61e84ec798206fbb6f89fd923f0d762e84e7a1e2e2a5fb502f4822f89a2a4b631dc42fa829e845bf3980886185650e8de28774400e0c351805061 SHA512 6960a557e6c2f82ca2e68e48ddcb502e1527235a3ca34df2f5f7f63f0f12afacedb15fefe4a39768fe7a2c70308793544b5b24b6f2be2c6b934b0c0e0e796d57 +EBUILD amd-2.4.6-r1.ebuild 882 BLAKE2B 413aaf0223555573845255dac5f88ac55a8c4022e24d846bd6df47205138662f4986749da81b801a81e4e0398d1bde1deb8dc2d51456288f112501e42f3076b8 SHA512 8762ebf0c74d940adbcddfa93ab711ae27d972d01f984bee72851700c4fc8295c2ff03f5c98950f03521d3d08ff07a0f45e857df13d7c840eac51fe72af226b2 EBUILD amd-2.4.6.ebuild 770 BLAKE2B b4cd6552357a25f2bb55316203cd34af09909621a7336d3f6eb03af974d2fe00193b0459536af8d4d961c41f769ae77131395a568b75823ec05c40efbc7d61bb SHA512 1608629f558dc14a4cf4a99beeb9973b9475332902311e16cdc0fff2a51f0b950ff5e6f64f602190cb4c76481eac0425f2c665171ec68531c445c984989641ed MISC metadata.xml 492 BLAKE2B ac6367af33dd797e703e3370d6369db5286b11f862b5387258e9edd860554049c7d9e2bf2186c86e24a7fc29c3f1122f330c0a3cf0420f13085757cff0a388b3 SHA512 1c53658e87337e1e43149c363c901dabfdde52b647891d8026a7ce9ddcd5e36b0121948d169d446e5a78d05c26301bd4f8c7c06665506ebc0999c259b709a6b6 diff --git a/sci-libs/amd/amd-2.4.6-r1.ebuild b/sci-libs/amd/amd-2.4.6-r1.ebuild new file mode 100644 index 000000000000..f03f2eaa63da --- /dev/null +++ b/sci-libs/amd/amd-2.4.6-r1.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools fortran-2 + +DESCRIPTION="Library to order a sparse matrix prior to Cholesky factorization" +HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html" +SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux" +IUSE="doc fortran" + +BDEPEND="virtual/pkgconfig + doc? ( virtual/latex-base )" +DEPEND=">=sci-libs/suitesparseconfig-5.4.0" +RDEPEND="${DEPEND}" + +PATCHES=( "${FILESDIR}"/${PN}-2.4.6-dash_doc.patch ) + +src_prepare(){ + default + + eautoreconf +} + +src_configure() { + econf \ + --disable-static \ + $(use_enable fortran) \ + $(use_with doc) +} + +src_install() { + default + + # no static archives + find "${D}" -name '*.la' -delete || die +} diff --git a/sci-libs/amd/files/amd-2.4.6-dash_doc.patch b/sci-libs/amd/files/amd-2.4.6-dash_doc.patch new file mode 100644 index 000000000000..62d9071422ce --- /dev/null +++ b/sci-libs/amd/files/amd-2.4.6-dash_doc.patch @@ -0,0 +1,16 @@ +diff --git a/Doc/Makefile.am b/Doc/Makefile.am +index 44361ff..039b02f 100644 +--- a/Doc/Makefile.am ++++ b/Doc/Makefile.am +@@ -1,9 +1,8 @@ + + AMD_UserGuide.pdf: +- echo '\begin{verbatim}' > amd_h.tex ++ printf '\\begin{verbatim}\n' > amd_h.tex + expand -8 $(top_srcdir)/Include/amd.h >> amd_h.tex +- echo '\end{verbatim}' >> amd_h.tex +- -ln -s $(srcdir)/*.{tex,bib} . ++ printf '\\end{verbatim}\n' >> amd_h.tex + $(PDFLATEX) AMD_UserGuide + $(BIBTEX) AMD_UserGuide + $(PDFLATEX) AMD_UserGuide diff --git a/sci-libs/armadillo/Manifest b/sci-libs/armadillo/Manifest index bf28a878af13..cccc8f069c62 100644 --- a/sci-libs/armadillo/Manifest +++ b/sci-libs/armadillo/Manifest @@ -1,7 +1,7 @@ +DIST armadillo-10.2.0.tar.xz 6042348 BLAKE2B e85f24ca7137c3a8c8fc53db15b382f2e4d468673c99e036ef9b4a4436be47d24a37664dfa88ff9effa08a4c868bd212d03c204dda09cd26038a0f8ccbf61375 SHA512 c5d6f4bac0acba63fbd7681653d521249fd303ffbbc5b18df71500eb111514c1d09db600a580091d6a23c83748c109c30938bbcd80a3a0b2c25e2fdea932f2cd DIST armadillo-8.300.2.tar.xz 4593916 BLAKE2B 0cb9082d9452b43599dea810036a1cdcd8ef4ab6ce5b2bc7b9d9201f1f396666a2aecb81ffa62388e1ee3de9a8c7df083df594224af47e5df7ee4d3c2743d6cc SHA512 df069634db377e95e02dfca02312b082b34cab91bae0b1fd04a97339477074fc50c74f8adf92786ac6f0fc148044d527461617f382cc996523251b6d1287e41c -DIST armadillo-9.800.3.tar.xz 4716468 BLAKE2B 4909cbcf1f8d6aedb366bb9b21784e865d9e68a3c833263d1c1df942e96ef679e31191ea9dbd8bcddab6086bd26c80915546c29dfdd16188f0d9e865e7b3c03f SHA512 6088f7254c54067421fcc0b69751c6d37ffe484474ab5955755fa5b3dd38ed4246e353701fb614c820d192675ec75f134e3bbb511a70612e4fbf133a89cacc21 DIST armadillo-9.850.1.tar.xz 4715832 BLAKE2B 41256d8f54ec1f2d4f7cfdf58bd67e66cc2ffbe0f1daf259a4d76e0816d89708fa5528d57b244000393404108c8d0d613d03321f14e5653163d0c1cc6ec7e273 SHA512 b2b9f0290f8f39a687db71a02b127086d5ff22cee77fba5211da2ea8a8d8a5edc256b31b7fce8e98aa1955a84c63e488adcd22f8cd070015a6fcd4b4f1cb37c7 +EBUILD armadillo-10.2.0.ebuild 3514 BLAKE2B 8fcf3eeb1c06d0d4c9cdf64dcd0856a48c320c84b001d3813cb0c54a488eefba3ab2efb57173e3101a267c09d331faef0b9d34a25c1b0faee2706affd3e3fd01 SHA512 dccc8e0116de10becb4a5776b4d4227f72f80261b3ba4c1d24e9e0d84a8d8ec04a9cc561782f2fe6a60d8e84b2481f62e16e56af813d5f0b563ed50e53232ef5 EBUILD armadillo-8.300.2.ebuild 3400 BLAKE2B 477f6db643c60d915b556574868181bf6b5613c0c6f99ac42f31440aa6ade6447e82f7e241103cfdc6a848223d6dd5dcd170dabecd429535ab7724fec68d6eaf SHA512 096f51d270472bbed4ebcce4bf899644966d31154ce18eacc8c77d70afd6e9ad31d8e02435a0e7413005dfb1a2a844f402169c1cf4457b98ba0d760daa763d37 -EBUILD armadillo-9.800.3.ebuild 3499 BLAKE2B 5cb98f75d176cfaa1ab2a84271730f710867a96df908de0235ec0422426a881d57880b0679e724c84741f6ce172b392c6ec993e1685a0b5279c835b7ea3996e2 SHA512 d4d0659690847d5287697b1514b4839cec662ed9d8f185f4e6e9dd529a1b26e4c9417203d62ddafcbe885ea5b6b38e9a8f8160e9904bffe3832f556a4ed39b6f EBUILD armadillo-9.850.1.ebuild 3537 BLAKE2B 7203b502b8b10726f4b169466bdb518bd4bb5fb3afb88cfa04401143ba4485073f7a4ed9ca4de8887f5c421887dd761065f3badfd7a90a274f95e041acd2b6ec SHA512 32b12aba26678b770926ee72f62b45c657502f34c9ef5a7dac2f7500f7d0183a23e3324a4c68d42a55153cd744520d5ada7d4d437ba47a6cff3748ecf986aff2 MISC metadata.xml 1537 BLAKE2B 5116cb259f8e27fb11430cc2b3ab3a351afcefa0734e7997c962596aab226cfdd052ba3186ea068d8d31d501520d063037185909bcf02de72f57b4c8dfd86e31 SHA512 206e3f8912bd753837b0e8301c1db0f94e3480d0f50ba83c1b9a4be44498507ccade8f0b317c3bf2baa8aa782a93c88806ddbe710eed9d8fecb135494c26bc71 diff --git a/sci-libs/armadillo/armadillo-9.800.3.ebuild b/sci-libs/armadillo/armadillo-10.2.0.ebuild index ac58225faa5a..baaa3579072c 100644 --- a/sci-libs/armadillo/armadillo-9.800.3.ebuild +++ b/sci-libs/armadillo/armadillo-10.2.0.ebuild @@ -1,18 +1,18 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 CMAKE_IN_SOURCE_BUILD=1 -inherit cmake-utils toolchain-funcs multilib eutils +inherit cmake toolchain-funcs multilib eutils DESCRIPTION="Streamlined C++ linear algebra library" HOMEPAGE="http://arma.sourceforge.net/" SRC_URI="mirror://sourceforge/arma/${P}.tar.xz" LICENSE="Apache-2.0" -SLOT="0/9" +SLOT="0/10" KEYWORDS="~amd64 ~arm ~ppc64 ~x86 ~amd64-linux ~x86-linux" IUSE="arpack blas doc examples hdf5 lapack mkl superlu test" RESTRICT="!test? ( test )" @@ -49,7 +49,7 @@ src_prepare() { sed -i -e 's/^# No automagic include(ARMA_FindMKL)/include(ARMA_FindMKL)/g' CMakeLists.txt || die fi - cmake-utils_src_prepare + cmake_src_prepare } src_configure() { @@ -91,12 +91,13 @@ src_configure() { fi if use hdf5; then mycmakeargs+=( - -DHDF5_FOUND=ON + -DDETECT_HDF5=ON -DHDF5_LIBRARIES="-lhdf5" + -DHDF5_INCLUDE_DIRS=/usr/include ) else mycmakeargs+=( - -DHDF5_FOUND=OFF + -DDETECT_HDF5=OFF ) fi if use lapack; then @@ -121,7 +122,7 @@ src_configure() { ) fi - cmake-utils_src_configure + cmake_src_configure } src_test() { @@ -136,7 +137,7 @@ src_test() { } src_install() { - cmake-utils_src_install + cmake_src_install dodoc README.md use doc && dodoc *pdf *html if use examples; then diff --git a/sci-libs/arprec/Manifest b/sci-libs/arprec/Manifest index 63a3c3b008b7..7dfd2db2069e 100644 --- a/sci-libs/arprec/Manifest +++ b/sci-libs/arprec/Manifest @@ -1,8 +1,4 @@ -AUX arprec-2.2.18-fix-c++14.patch 368 BLAKE2B 021af8127ec3d139ec3e5ab00b35296a9e0321b3f6a99aff5d853ed3cf5666a47cbacd11817ff4aa0ae835b229d7cdd10d342c06edc250a75789b589b0847501 SHA512 9763bd97dd8b678195c3967296deaf4b2d9c3853c5f35b4b9c31a02bbd1ba810809585c46a9bdf42f5b56dc6abf4e326f5d3ab0665cd3aff0f363a77598ec029 -AUX arprec-2.2.18-gold.patch 545 BLAKE2B 26ec85a03bb693bdc484fa14d360e90b5571d172d9d696f71363a7f7805d957c14597ddb221f827c2752b89680b6c4382935dd84874a3887f2df11ba5e31ca5c SHA512 09368abacb24ea28e7ff32f1638526e17a0928e3f37f3d216b6918666ac86df8cd447400e2aa3bae6e81c6037ac43ce4b2af9c3dae79b322fa934b36f727a032 AUX arprec-2.2.19-gold.patch 477 BLAKE2B 128d84824143a6af222f92462efd58d22ae014e359555b59380bd0060faea249a879244baca3cf7c2d81510070647c49414c4589efce5ce40328a6f3871e387f SHA512 f8a6408916b26a395832a6bd55f43de7153ceab5a343df1f974a2dd9e6ae3eec1b2533db36a11061e74f15f471dcff52a3247681e8872b15dfb8115f9b406cf6 -DIST arprec-2.2.18.tar.gz 1751743 BLAKE2B de9a9a37bbe03357ad17d9d10d8bb42f73b9c9464643a35d4d1e209d049c205f967266dcae1af8972fc8c029f03053b298a4c85fdc48fb3f66d152aca8623a25 SHA512 372eb0a0c3aceac0d222679058f47c4d1037b5a51524b752b87f1b61c1b25101c34d4e56d9da45b4075ea7040dd59a597e0add4f34be902955dcf209423a6579 DIST arprec-2.2.19.tar.gz 1962133 BLAKE2B a2fccc1908e791fd4759e61ff52b180fcaccbfbfa831ee1beca9b22a1a745d17d21040974ffe02ea21397a2339c819a30cd93a247738564a2b433f7cef14c9e4 SHA512 97cf090398aa169e31711077efd26dc6da1f62291ab37b241b133634838bdd44743f85b86b861a3be18d2696ae9132afb6cd1871502bedb9cc17dfb63fde2632 -EBUILD arprec-2.2.18.ebuild 1532 BLAKE2B 0c237b7fa23540281cd631fffe19aba2f174b477230b79e3f78ecfe00523bef7555bb3e58fb1c9fabdf97161389271ff225401265c6730b145c3d27c93d1e43c SHA512 a0caa72eb9ba891b1b420985c569bd928f3b4602b062082fdf354db7c6c66a400fc7941396798531792cc73a491221b4c20dfc1b491ec2136fb28cd7b4e5a798 EBUILD arprec-2.2.19.ebuild 1569 BLAKE2B 842a8e76f459fef164ecc204e8437a4143cc33567a035243d6540a3aaae9c693ba2d1142fb81a02b422095ef5fee8e5e4fa36dea41cdf405e1081b70a3de534d SHA512 23333b1466a36adf24ce851491c4416b5fa71267fd730e82c8c39636f992a851191ca0469670b3442b49bed27bb06cfa267c064aeef29a77feaf6fcce90bf369 MISC metadata.xml 355 BLAKE2B c5006c21c956f46147334ca6f850d103f510292cbc7507cb4c8f6ec4ccdfca6fb61dba75f76321095c9668359e80f333d084e6aa5629aa9bd939def140b0f98e SHA512 2c381deb8c4759173c528fc3b86dd031f10b9094201257950c4a90d8ab6276fed3d5ec15a01e2154904313945b63c1854f7b213d8eaec7a62c927c5b3ed16ce8 diff --git a/sci-libs/arprec/arprec-2.2.18.ebuild b/sci-libs/arprec/arprec-2.2.18.ebuild deleted file mode 100644 index 8c4069fcd8da..000000000000 --- a/sci-libs/arprec/arprec-2.2.18.ebuild +++ /dev/null @@ -1,80 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran -FORTRAN_STANDARD=90 - -inherit autotools fortran-2 - -DESCRIPTION="Arbitrary precision float arithmetics and functions" -HOMEPAGE="https://crd-legacy.lbl.gov/~dhbailey/mpdist/" -SRC_URI="https://crd.lbl.gov/~dhbailey/mpdist/${P}.tar.gz" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="cpu_flags_x86_fma3 cpu_flags_x86_fma4 doc fortran qd static-libs" - -DEPEND="qd? ( sci-libs/qd[fortran=] )" -RDEPEND="${DEPEND}" - -PATCHES=( - "${FILESDIR}"/${PN}-2.2.18-fix-c++14.patch - "${FILESDIR}"/${P}-gold.patch -) - -src_prepare() { - default - eautoreconf -} - -src_configure() { - econf \ - --enable-shared \ - $(use_enable static-libs static) \ - $(use_enable cpu_flags_x86_fma$(usex cpu_flags_x86_fma3 3 4) fma) \ - $(use_enable fortran) \ - $(use_enable qd) -} - -src_compile() { - default - - if use fortran; then - emake toolkit - cd toolkit || die - ./mathinit || die "mathinit failed" - fi -} - -src_install() { - default - - if use fortran; then - cd toolkit || die - - exeinto /usr/libexec/${PN} - doexe mathtool - - insinto /usr/libexec/${PN} - doins *.dat - - cat > mathtool.exe <<- _EOF_ || die - #!/usr/bin/env sh - cd "${EPREFIX}/usr/libexec/${PN}" && exec ./mathtool - _EOF_ - - newbin mathtool.exe mathtool - newdoc README README.mathtool - fi - - if ! use doc; then - rm "${ED%/}"/usr/share/doc/${PF}/*.pdf || die - fi - - if ! use static-libs; then - find "${D}" -name '*.la' -delete || die - fi -} diff --git a/sci-libs/arprec/files/arprec-2.2.18-fix-c++14.patch b/sci-libs/arprec/files/arprec-2.2.18-fix-c++14.patch deleted file mode 100644 index 680e921d6807..000000000000 --- a/sci-libs/arprec/files/arprec-2.2.18-fix-c++14.patch +++ /dev/null @@ -1,13 +0,0 @@ -Fix compiling with C++14, due to changed operator T* -> operator bool semantics. -See also: https://bugs.gentoo.org/show_bug.cgi?id=593872 - ---- a/src/write.cpp -+++ b/src/write.cpp -@@ -196,6 +196,6 @@ - - string str = to_string(precision, width, expn_width, - fmt, showpos, uppercase, fill); -- return (s << str) != 0; -+ return static_cast<bool>(s << str); - } - diff --git a/sci-libs/arprec/files/arprec-2.2.18-gold.patch b/sci-libs/arprec/files/arprec-2.2.18-gold.patch deleted file mode 100644 index 293b495f10a7..000000000000 --- a/sci-libs/arprec/files/arprec-2.2.18-gold.patch +++ /dev/null @@ -1,15 +0,0 @@ - fortran/Makefile.am | 1 + - 1 file changed, 1 insertion(+) - -diff --git a/fortran/Makefile.am b/fortran/Makefile.am -index 8eb4d19..91a125c 100644 ---- a/fortran/Makefile.am -+++ b/fortran/Makefile.am -@@ -4,6 +4,7 @@ LDADD = libarprec_f_main.la libarprecmod.la $(top_builddir)/src/libarprec.la $(F - - lib_LTLIBRARIES = libarprecmod.la libarprec_f_main.la - libarprecmod_la_SOURCES = f_mp.cpp mp_mod.f mp_modm.f mp_modx.f -+libarprecmod_la_LIBADD = $(top_builddir)/src/libarprec.la $(FCLIBS) - libarprec_f_main_la_SOURCES = main.cpp - - if UPCASE_MODULE diff --git a/sci-libs/avogadrolibs/Manifest b/sci-libs/avogadrolibs/Manifest index fe6af898c915..83703783fd4f 100644 --- a/sci-libs/avogadrolibs/Manifest +++ b/sci-libs/avogadrolibs/Manifest @@ -1,13 +1,6 @@ -AUX avogadrolibs-0.7.2-6464.patch 902 BLAKE2B 29a06e0d5e814aee4c1aff30af3642e374d32813e4e9837706ef652f89ffde173ff043fc3589fc08b22592e3ded2c0d8ef9c544e54a561ac658ae43651403633 SHA512 3851a3c5f7c599e439b4faa491ea080264e60bf2a7c4d35e01a10726f901a5797026bf32535107b46ca44335c5723d9ec7f0b6a46e9eebf7ffd9f90c7f2103d3 AUX avogadrolibs-1.91.0_pre20180406-bundled-genxrdpattern.patch 1644 BLAKE2B 3b25bc2648b323b803b5d0b6e10be2689ef9e4c988d0c55abe172bf4312da8f5f9b527262a2f8e48d0b2391b01a03a976bc36cc22c467ac9a44fb85cc43c7a6d SHA512 515c7029e6f99c5e88a37f43387e656b2873b99e14e8d8e9b1b20bf82604f70be8f669d8b97383e80969b0f80d43439647fdfd17566bbf6fbd32cb75ce2fb4e3 -AUX avogadrolibs-1.91.0_pre20180406-unbundle-jsoncpp.patch 5377 BLAKE2B 5de00cdcd90d7642ddb82aa8ae0e6685ad17c2a6332a4ef9ba28be66f48a6eabf51d557173a6129b588b9eafb394db74d332fc178b2a323d29777e88e37174a7 SHA512 b4445aa7377370fd1336b7fdf0aa3dfa93b6d538efa70ca383cdcf85d9f54e64a6bd0c2af5e0f5c80ed731d4babd4c2a1f7a4e909fb5cf2a30bf72224737870a -AUX avogadrolibs-1.91.0_pre20180406-underlinking.patch 549 BLAKE2B e773e8994677a4cc0880013455efbe153ecdf92061599b787e3486638a6a2a0b5ebe731387a6f79357ff8f049c74b2a5efdeec0ed886b89e02f5160268dda4a2 SHA512 05d7ef99d1d5d395962def8896fb0c61ae437aeb0199ea8ce26a6076abba0559973aff5a4a4620f5c7dbe6413c80237490ad6b80f8a7503a8b2d3ae92f81fbf4 -AUX avogadrolibs-1.91.0_pre20180415-qt-5.11b3.patch 3887 BLAKE2B 3803af011ecd8df2cc8cc969623d37237ed398cfd82baaf06d6d59da7dfdda3c8a042ffe2b5e15e9571cb3d74ae0eba4e3d80c9cbd9a6fd53a0035340257a382 SHA512 d49da2a4f215a74f1267de1fe74a19e1f2c4fdd61d583a05c04ca3d8309fd0ed431ac10164a0130fa5a1a2c85f23b5de5445a75dbe0e0e83d7060521454507b1 AUX avogadrolibs-1.93.0-fix_AvogadroLibsConfig.patch 695 BLAKE2B 40feb1bfe132fe5ddbef435b4d611a55650c0348c943f0796a87fc0761c99c4aebcbc54fb4d29e545c66384ad7352067f3ff5549e9e26bdd2cfe602974f56425 SHA512 7e5198bb3b6c7e83372bd6b54d3f50347ff8519fd24adcb0c59fdc50593be1c08cc2b1d7d12dc530de10c80bfaacad17679a6b1b90ded82947fe94d6dfa51f56 -DIST avogadrolibs-1.91.0_pre20180415.tar.gz 2541101 BLAKE2B 526d2135af123d31220c8dd87351a35464e3dfd6b8d411d6dc9a6b3e74693090adfa3b61198a6a296eac99e6bbd67623f7aeda6a1752a09e3e3bcaa3df4d5008 SHA512 1cc646368f70523fcf20c6cf598025234162e0c81da64a3b5375c1691a6743f2aceb1f13230937bf9da045e725a23c1c89c8121e07b31ef9e2c7987b1feafccc DIST avogadrolibs-1.93.0.tar.gz 2735862 BLAKE2B b5d696f23aeeab27358ee390a30b2cf146e7119185a0d2e8d71b34d2744e534cd8b50b36d12928b5aa723118db470272b6428514593d64770d172c4bde730cf6 SHA512 1af220e5614cbd96656679c2879cb7f7c46acd135b4e6f2e5f8d0ba98601ce004e78f019a0a71c643f005451309bd194eb73eb9f66707685e5855b47e95f7eae -DIST linux64-genXrdPattern 7480152 BLAKE2B dca8285c41aadfaa20c72f337e0f02db8ee07ce30c11ae84bf3aa7bd0b2220273d33f484d63f761d41a8946c6a0b77a0fb27906c480bcae01ae49b1531ae5cbb SHA512 538bde12e1e52600a21640d5907f43fcc853c6f3c111880f39eb238093e3d1358ccdfa1f45e944ec8b8e5ee3c2dff269cefe5334db5d73300e6ca327c95520b8 DIST linux64-genXrdPattern-avogadrolibs-1.93.0 7480152 BLAKE2B dca8285c41aadfaa20c72f337e0f02db8ee07ce30c11ae84bf3aa7bd0b2220273d33f484d63f761d41a8946c6a0b77a0fb27906c480bcae01ae49b1531ae5cbb SHA512 538bde12e1e52600a21640d5907f43fcc853c6f3c111880f39eb238093e3d1358ccdfa1f45e944ec8b8e5ee3c2dff269cefe5334db5d73300e6ca327c95520b8 -EBUILD avogadrolibs-1.91.0_pre20180415.ebuild 2223 BLAKE2B 6a9201d8b944a49fca4a0ef06f227e3d941539666d14a60a12cd72531ff46b1a5845a1543c44a8117b843174a2dacb4b3605e7a5afd4fc893b404bcb9b72304e SHA512 cad3ea94243eccc4f734368a5a8ebdfef1ec7ece172ab6b97e2470b3bc4b5e05c7da2b5ca8c898d4f05ebf5a8531aca6dfbcceea39987dbe5754617bbbe0293e EBUILD avogadrolibs-1.93.0.ebuild 2422 BLAKE2B 911019bbe695b030064bd0c23159402d22ddfae058f3a7bcbc87427b76616b125ae283ab0ed35afe16d915957f7468974afc74b8dfb8c4ff3bbb976987ea918e SHA512 a360095e50bee771e34c4be736a1afd5ccf6ad4687a8f0294093a18a095cf2bea6ec4443b79bae2e75ae3edcbeb77439af54d3d0d1a32930554727b7d62acdfc -MISC metadata.xml 670 BLAKE2B 39737e6ffacaf9284506e41dfa1154f233a6bf37dd514c0eafe6bdf7bd7129a43d81cf4c3e510759b7888277bb403ad933e21abf0ba4dbedd43fda2aa2b55edd SHA512 781b3e67a291253d83d6c2e11124b07dbae652267de2702a1a2b10680f7db19cf35bda8964b320658d849091bd9ead07eeb5fc682a8817101dd1e7a1e9e20757 +MISC metadata.xml 579 BLAKE2B 59aa6538e67637b222e3147e245431ab0ea8efc1436ba0662f55630e917a0e2665a561653d50c72063c3797f378c6113596fd2b798ec24b2832e3b5acfe1fce5 SHA512 b05aaa97f0c7f7e205cdbafea4301f3dfcc587b7a7ce5907be5da472f67b757c9f254114c68766a4f0e0e58e274f3146221418f6cec7afa4bf5db62c2d1b1fa4 diff --git a/sci-libs/avogadrolibs/avogadrolibs-1.91.0_pre20180415.ebuild b/sci-libs/avogadrolibs/avogadrolibs-1.91.0_pre20180415.ebuild deleted file mode 100644 index f27d9ea8207e..000000000000 --- a/sci-libs/avogadrolibs/avogadrolibs-1.91.0_pre20180415.ebuild +++ /dev/null @@ -1,86 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -COMMIT=606debb5d7c2c4020478264c609f895584fc5e38 -inherit cmake-utils - -DESCRIPTION="Advanced molecule editor and visualizer 2 - libraries" -HOMEPAGE="https://www.openchemistry.org/" -SRC_URI="https://github.com/OpenChemistry/${PN}/archive/${COMMIT}.tar.gz -> ${P}.tar.gz - vtk? ( https://github.com/psavery/genXrdPattern/releases/download/1.0-static/linux64-genXrdPattern )" - -SLOT="0" -LICENSE="BSD GPL-2+" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="archive doc hdf5 qt5 static-plugins test vtk" -RESTRICT="!test? ( test )" - -REQUIRED_USE="vtk? ( qt5 )" - -# TODO: Not yet packaged: -# sci-libs/libmsym (https://github.com/mcodev31/libmsym) -# sci-libs/spglib (https://atztogo.github.io/spglib/) -RDEPEND=" - dev-libs/jsoncpp:= - >=sci-chemistry/molequeue-0.7 - archive? ( app-arch/libarchive ) - hdf5? ( sci-libs/hdf5:= ) - qt5? ( - dev-qt/qtconcurrent:5 - dev-qt/qtcore:5 - dev-qt/qtgui:5 - dev-qt/qtnetwork:5 - dev-qt/qtwidgets:5 - media-libs/glew:0= - virtual/opengl - ) - vtk? ( sci-libs/vtk[qt5,views] ) -" -DEPEND="${RDEPEND} - dev-cpp/eigen:3 - qt5? ( dev-qt/linguist-tools:5 ) - test? ( dev-cpp/gtest )" - -S="${WORKDIR}/${PN}-${COMMIT}" - -PATCHES=( - "${FILESDIR}"/${PN}-0.7.2-6464.patch - "${FILESDIR}/"${PN}-1.91.0_pre20180406-underlinking.patch - "${FILESDIR}/"${PN}-1.91.0_pre20180406-unbundle-jsoncpp.patch - "${FILESDIR}/"${PN}-1.91.0_pre20180406-bundled-genxrdpattern.patch - "${FILESDIR}/"${P}-qt-5.11b3.patch -) - -src_unpack() { - unpack ${P}.tar.gz - if use vtk; then - cp "${DISTDIR}"/linux64-genXrdPattern "${WORKDIR}/genXrdPattern" || die - fi -} - -src_configure() { - local mycmakeargs=( - -DUSE_PROTOCALL=OFF - -DBUILD_GPL_PLUGINS=ON - -DUSE_MOLEQUEUE=ON - -DUSE_LIBMSYM=OFF - -DUSE_LIBSPG=OFF - -DUSE_PYTHON=OFF - -DUSE_LIBARCHIVE=$(usex archive) - -DBUILD_DOCUMENTATION=$(usex doc) - -DUSE_HDF5=$(usex hdf5) - -DENABLE_TRANSLATIONS=$(usex qt5) - -DUSE_OPENGL=$(usex qt5) - -DUSE_QT=$(usex qt5) - -DBUILD_STATIC_PLUGINS=$(usex static-plugins) - -DENABLE_TESTING=$(usex test) - -DUSE_VTK=$(usex vtk) - ) - use vtk && mycmakeargs+=( - -DBUNDLED_GENXRDPATTERN="${WORKDIR}/genXrdPattern" - ) - - cmake-utils_src_configure -} diff --git a/sci-libs/avogadrolibs/files/avogadrolibs-0.7.2-6464.patch b/sci-libs/avogadrolibs/files/avogadrolibs-0.7.2-6464.patch deleted file mode 100644 index f763c242cc48..000000000000 --- a/sci-libs/avogadrolibs/files/avogadrolibs-0.7.2-6464.patch +++ /dev/null @@ -1,16 +0,0 @@ - cmake/AvogadroLibsConfig.cmake.in | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/cmake/AvogadroLibsConfig.cmake.in b/cmake/AvogadroLibsConfig.cmake.in -index ad57195..8a63400 100644 ---- a/cmake/AvogadroLibsConfig.cmake.in -+++ b/cmake/AvogadroLibsConfig.cmake.in -@@ -10,7 +10,7 @@ set(AvogadroLibs_VERSION "${AvogadroLibs_VERSION_MAJOR}.${AvogadroLibs_V - - set(AvogadroLibs_INSTALL_PREFIX "@CMAKE_INSTALL_PREFIX@") - set(AvogadroLibs_INCLUDE_DIRS "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_INCLUDE_DIR@") --set(AvogadroLibs_LIBRARY_DIR "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_LIBRARY_DIR@@LIB_SUFFIX@") -+set(AvogadroLibs_LIBRARY_DIR "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_LIBRARY_DIR@") - set(AvogadroLibs_RUNTIME_DIR "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_RUNTIME_DIR@") - set(AvogadroLibs_CMAKE_DIR "${AvogadroLibs_LIBRARY_DIR}/cmake/avogadrolibs") - diff --git a/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180406-unbundle-jsoncpp.patch b/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180406-unbundle-jsoncpp.patch deleted file mode 100644 index 3b5280cdc47e..000000000000 --- a/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180406-unbundle-jsoncpp.patch +++ /dev/null @@ -1,143 +0,0 @@ -From 7e01a11dde25af75b21090fdaa2ca574ef703e53 Mon Sep 17 00:00:00 2001 -From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com> -Date: Sun, 8 Apr 2018 01:48:27 +0200 -Subject: [PATCH 1/2] Drop bogus jsoncpp.cpp include from spectra.cpp - ---- - avogadro/qtplugins/spectra/spectra.cpp | 2 -- - 1 file changed, 2 deletions(-) - -diff --git a/avogadro/qtplugins/spectra/spectra.cpp b/avogadro/qtplugins/spectra/spectra.cpp -index 043b52e..aa9c641 100644 ---- a/avogadro/qtplugins/spectra/spectra.cpp -+++ b/avogadro/qtplugins/spectra/spectra.cpp -@@ -26,8 +26,6 @@ - #include <QtWidgets/QFileDialog> - #include <avogadro/qtgui/molecule.h> - --#include <jsoncpp.cpp> -- - namespace Avogadro { - namespace QtPlugins { - --- -2.17.0 - - -From 52cd35662aa2094db77ab4002b7c44f3dab2802d Mon Sep 17 00:00:00 2001 -From: Andreas Sturmlechner <andreas.sturmlechner@gmail.com> -Date: Sun, 8 Apr 2018 02:00:30 +0200 -Subject: [PATCH 2/2] Use pkgconfig to find system-jsoncpp - ---- - CMakeLists.txt | 5 ++++- - avogadro/io/CMakeLists.txt | 4 ++-- - avogadro/qtplugins/importpqr/CMakeLists.txt | 4 ++-- - avogadro/qtplugins/plugindownloader/CMakeLists.txt | 4 ++-- - avogadro/qtplugins/spectra/CMakeLists.txt | 2 +- - avogadro/quantumio/CMakeLists.txt | 4 ++-- - 6 files changed, 13 insertions(+), 10 deletions(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 7574fa0..7ce80b0 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -52,8 +52,11 @@ option(USE_PROTOCALL "Enable libraries that use ProtoCall" OFF) - option(USE_MOLEQUEUE "Enable the MoleQueue dependent functionality" ON) - option(USE_PYTHON "Use Python to wrap some of our API" OFF) - -+find_package(PkgConfig REQUIRED) -+pkg_check_modules(JSONCPP jsoncpp) -+ - add_subdirectory(utilities) --add_subdirectory(thirdparty) -+# add_subdirectory(thirdparty) - add_subdirectory(avogadro) - - if(ENABLE_TESTING) -diff --git a/avogadro/io/CMakeLists.txt b/avogadro/io/CMakeLists.txt -index 1dd7967..10ddbb6 100644 ---- a/avogadro/io/CMakeLists.txt -+++ b/avogadro/io/CMakeLists.txt -@@ -15,7 +15,7 @@ endif() - # compilers that support that notion. - include_directories(SYSTEM "${EIGEN3_INCLUDE_DIR}" - "${AvogadroLibs_SOURCE_DIR}/thirdparty/pugixml" -- "${AvogadroLibs_SOURCE_DIR}/thirdparty/jsoncpp") -+ "${JSONCPP_INCLUDE_DIRS}") - - if(DEFINED AvogadroLibs_MEMORY_INCLUDE_DIRS) - # The smart pointer classes just require headers. -@@ -51,7 +51,7 @@ endif() - - avogadro_add_library(AvogadroIO ${HEADERS} ${SOURCES}) - --target_link_libraries(AvogadroIO LINK_PUBLIC AvogadroCore LINK_PRIVATE jsoncpp) -+target_link_libraries(AvogadroIO LINK_PUBLIC AvogadroCore LINK_PRIVATE ${JSONCPP_LIBRARIES}) - if(USE_HDF5) - target_link_libraries(AvogadroIO LINK_PRIVATE ${HDF5_LIBRARIES}) - endif() -diff --git a/avogadro/qtplugins/importpqr/CMakeLists.txt b/avogadro/qtplugins/importpqr/CMakeLists.txt -index ee27da9..365c51a 100644 ---- a/avogadro/qtplugins/importpqr/CMakeLists.txt -+++ b/avogadro/qtplugins/importpqr/CMakeLists.txt -@@ -1,4 +1,4 @@ --include_directories(SYSTEM "${AvogadroLibs_SOURCE_DIR}/thirdparty/jsoncpp") -+include_directories(SYSTEM ${JSONCPP_INCLUDE_DIRS}) - - # Extension - set(importpqr_srcs -@@ -17,4 +17,4 @@ avogadro_plugin(ImportPQR - "" - ) - --target_link_libraries(ImportPQR LINK_PRIVATE ${Qt5Network_LIBRARIES} jsoncpp) -+target_link_libraries(ImportPQR LINK_PRIVATE ${Qt5Network_LIBRARIES} ${JSONCPP_LIBRARIES}) -diff --git a/avogadro/qtplugins/plugindownloader/CMakeLists.txt b/avogadro/qtplugins/plugindownloader/CMakeLists.txt -index 4b07a53..ab4c661 100644 ---- a/avogadro/qtplugins/plugindownloader/CMakeLists.txt -+++ b/avogadro/qtplugins/plugindownloader/CMakeLists.txt -@@ -1,4 +1,4 @@ --include_directories(SYSTEM "${AvogadroLibs_SOURCE_DIR}/thirdparty/jsoncpp") -+include_directories(SYSTEM ${JSONCPP_INCLUDE_DIRS}) - - find_package(LibArchive REQUIRED) - include_directories(SYSTEM ${LIBARCHIVE_INCLUDE_DIRS}) -@@ -20,4 +20,4 @@ avogadro_plugin(PluginDownloader - ) - - target_link_libraries(PluginDownloader LINK_PRIVATE ${Qt5Network_LIBRARIES} -- ${LIBARCHIVE_LIBRARIES} jsoncpp) -+ ${LIBARCHIVE_LIBRARIES} ${JSONCPP_LIBRARIES}) -diff --git a/avogadro/qtplugins/spectra/CMakeLists.txt b/avogadro/qtplugins/spectra/CMakeLists.txt -index a2216b8..09d8fc9 100644 ---- a/avogadro/qtplugins/spectra/CMakeLists.txt -+++ b/avogadro/qtplugins/spectra/CMakeLists.txt -@@ -1,4 +1,4 @@ --include_directories(SYSTEM "${AvogadroLibs_SOURCE_DIR}/thirdparty/jsoncpp") -+include_directories(SYSTEM ${JSONCPP_INCLUDE_DIRS}) - - set(plugin_srcs - vibrationdialog.cpp -diff --git a/avogadro/quantumio/CMakeLists.txt b/avogadro/quantumio/CMakeLists.txt -index 15073e8..35fc766 100644 ---- a/avogadro/quantumio/CMakeLists.txt -+++ b/avogadro/quantumio/CMakeLists.txt -@@ -2,7 +2,7 @@ find_package(Eigen3 REQUIRED) - # Add as "system headers" to avoid warnings generated by them with - # compilers that support that notion. - include_directories(SYSTEM "${EIGEN3_INCLUDE_DIR}" -- "${AvogadroLibs_SOURCE_DIR}/thirdparty/jsoncpp") -+ ${JSONCPP_INCLUDE_DIRS}) - - include_directories(${CMAKE_CURRENT_BINARY_DIR}) - -@@ -30,4 +30,4 @@ set(SOURCES - ) - - avogadro_add_library(AvogadroQuantumIO ${HEADERS} ${SOURCES}) --target_link_libraries(AvogadroQuantumIO LINK_PUBLIC AvogadroIO LINK_PRIVATE jsoncpp) -+target_link_libraries(AvogadroQuantumIO LINK_PUBLIC AvogadroIO LINK_PRIVATE ${JSONCPP_LIBRARIES}) --- -2.17.0 - diff --git a/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180406-underlinking.patch b/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180406-underlinking.patch deleted file mode 100644 index f6f39c9e6b7b..000000000000 --- a/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180406-underlinking.patch +++ /dev/null @@ -1,18 +0,0 @@ -Fix underlinking problems in shared libraries. - ---- a/avogadro/qtplugins/playertool/CMakeLists.txt -+++ b/avogadro/qtplugins/playertool/CMakeLists.txt -@@ -7,3 +7,5 @@ - "" - playertool.qrc - ) -+ -+target_link_libraries(PlayerTool LINK_PRIVATE Qt5OpenGL) ---- a/avogadro/qtplugins/qtaim/CMakeLists.txt -+++ b/avogadro/qtplugins/qtaim/CMakeLists.txt -@@ -34,3 +34,5 @@ - - target_link_libraries(QTAIMScenePlugin - LINK_PRIVATE AvogadroRendering ${Qt5Concurrent_LIBRARIES}) -+target_link_libraries(QTAIMExtension -+ LINK_PRIVATE ${Qt5Concurrent_LIBRARIES}) diff --git a/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180415-qt-5.11b3.patch b/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180415-qt-5.11b3.patch deleted file mode 100644 index 11816e438c28..000000000000 --- a/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180415-qt-5.11b3.patch +++ /dev/null @@ -1,93 +0,0 @@ -From 03dd55beb878b5e15d891535a3c8b7ffa6133c92 Mon Sep 17 00:00:00 2001 -From: Andreas Sturmlechner <asturm@gentoo.org> -Date: Tue, 17 Apr 2018 11:31:22 +0200 -Subject: [PATCH] Fix build with Qt 5.11_beta3 (dropping qt5_use_modules) - ---- - avogadro/molequeue/CMakeLists.txt | 3 +-- - avogadro/qtgui/CMakeLists.txt | 3 +-- - avogadro/qtopengl/CMakeLists.txt | 3 +-- - avogadro/vtk/CMakeLists.txt | 3 +-- - tests/qtgui/CMakeLists.txt | 3 +-- - tests/qtopengl/CMakeLists.txt | 2 -- - 6 files changed, 5 insertions(+), 12 deletions(-) - -diff --git a/avogadro/molequeue/CMakeLists.txt b/avogadro/molequeue/CMakeLists.txt -index 43a9195..37431cd 100644 ---- a/avogadro/molequeue/CMakeLists.txt -+++ b/avogadro/molequeue/CMakeLists.txt -@@ -41,6 +41,5 @@ qt5_wrap_ui(UI_SOURCES ${UIS}) - list(APPEND SOURCES ${UI_SOURCES}) - - avogadro_add_library(AvogadroMoleQueue ${HEADERS} ${SOURCES}) --qt5_use_modules(AvogadroMoleQueue Widgets Network) - set_target_properties(AvogadroMoleQueue PROPERTIES AUTOMOC TRUE) --target_link_libraries(AvogadroMoleQueue AvogadroQtGui MoleQueueClient) -+target_link_libraries(AvogadroMoleQueue AvogadroQtGui MoleQueueClient Qt5::Widgets Qt5::Network) -diff --git a/avogadro/qtgui/CMakeLists.txt b/avogadro/qtgui/CMakeLists.txt -index e6cf8d3..3365261 100644 ---- a/avogadro/qtgui/CMakeLists.txt -+++ b/avogadro/qtgui/CMakeLists.txt -@@ -99,5 +99,4 @@ qt5_add_resources(RC_SOURCES ${RCS}) - list(APPEND SOURCES ${RC_SOURCES}) - - avogadro_add_library(AvogadroQtGui ${HEADERS} ${SOURCES}) --qt5_use_modules(AvogadroQtGui Widgets) --target_link_libraries(AvogadroQtGui AvogadroIO) -+target_link_libraries(AvogadroQtGui AvogadroIO Qt5::Widgets) -diff --git a/avogadro/qtopengl/CMakeLists.txt b/avogadro/qtopengl/CMakeLists.txt -index 354638c..28a473e 100644 ---- a/avogadro/qtopengl/CMakeLists.txt -+++ b/avogadro/qtopengl/CMakeLists.txt -@@ -16,5 +16,4 @@ set(SOURCES - ) - - avogadro_add_library(AvogadroQtOpenGL ${HEADERS} ${SOURCES}) --qt5_use_modules(AvogadroQtOpenGL Widgets) --target_link_libraries(AvogadroQtOpenGL AvogadroRendering AvogadroQtGui) -+target_link_libraries(AvogadroQtOpenGL AvogadroRendering AvogadroQtGui Qt5::Widgets) -diff --git a/avogadro/vtk/CMakeLists.txt b/avogadro/vtk/CMakeLists.txt -index abac5a1..498529c 100644 ---- a/avogadro/vtk/CMakeLists.txt -+++ b/avogadro/vtk/CMakeLists.txt -@@ -30,8 +30,7 @@ set(SOURCES - ) - - avogadro_add_library(AvogadroVtk ${HEADERS} ${SOURCES}) --qt5_use_modules(AvogadroVtk Widgets) - set_target_properties(AvogadroVtk PROPERTIES AUTOMOC TRUE) - target_link_libraries(AvogadroVtk AvogadroRendering AvogadroQtGui - vtkRenderingOpenGL2 vtkGUISupportQt vtkRenderingVolumeOpenGL2 -- vtkRenderingFreeType vtkInteractionStyle) -+ vtkRenderingFreeType vtkInteractionStyle Qt5::Widgets) -diff --git a/tests/qtgui/CMakeLists.txt b/tests/qtgui/CMakeLists.txt -index 1cfd51a..da08078 100644 ---- a/tests/qtgui/CMakeLists.txt -+++ b/tests/qtgui/CMakeLists.txt -@@ -49,9 +49,8 @@ endforeach() - - # Add a single executable for all of our tests. - add_executable(AvogadroQtGuiTests ${testSrcs}) --qt5_use_modules(AvogadroQtGuiTests Widgets Test) - target_link_libraries(AvogadroQtGuiTests AvogadroQtGui AvogadroMoleQueue -- MoleQueueClient ${GTEST_BOTH_LIBRARIES} ${EXTRA_LINK_LIB}) -+ MoleQueueClient ${GTEST_BOTH_LIBRARIES} ${EXTRA_LINK_LIB} Qt5::Widgets Qt5::Test) - - # Now add all of the tests, using the gtest_filter argument so that only those - # cases are run in each test invocation. -diff --git a/tests/qtopengl/CMakeLists.txt b/tests/qtopengl/CMakeLists.txt -index 370f28f..60fc5ae 100644 ---- a/tests/qtopengl/CMakeLists.txt -+++ b/tests/qtopengl/CMakeLists.txt -@@ -44,8 +44,6 @@ create_test_sourcelist(testDriver qtopengltests.cpp ${testSrcs}) - - add_executable(AvogadroQtOpenGLTests ${testDriver}) - --qt5_use_modules(AvogadroQtOpenGLTests OpenGL) -- - target_link_libraries(AvogadroQtOpenGLTests - AvogadroQtOpenGL - vtkImagingCore --- -2.17.0 - diff --git a/sci-libs/avogadrolibs/metadata.xml b/sci-libs/avogadrolibs/metadata.xml index ff1789dfa774..8e2ba3ed6642 100644 --- a/sci-libs/avogadrolibs/metadata.xml +++ b/sci-libs/avogadrolibs/metadata.xml @@ -7,7 +7,6 @@ </maintainer> <use> <flag name="archive">Enable archive support using <pkg>app-arch/libarchive</pkg></flag> - <flag name="static-plugins">Build all plugins statically into main plugin modules</flag> <flag name="vtk">Enable <pkg>sci-libs/vtk</pkg> support</flag> </use> <upstream> diff --git a/sci-libs/blis/Manifest b/sci-libs/blis/Manifest index 7fb99e9c3947..bcd937d962c7 100644 --- a/sci-libs/blis/Manifest +++ b/sci-libs/blis/Manifest @@ -1,12 +1,7 @@ AUX blas.lds 204 BLAKE2B 0e24237d75a95258e8e8bb6880fa8e5ecf0b59c15d03ed94af2a75f59c13d3ac6b81e630fe488a07eea5f738664604b3e7720ebc4d1865959c05d26d367d6294 SHA512 bfe176f5a707e3698d78983fc71e9bbb36bb433584b4abdb8add9bde2ae9d159c861f3662a3d8caa6f412a3acfda243f6d8ca650f596d2d444fe77cc5df10672 -AUX blis-0.5.2-blas-provider.patch 581 BLAKE2B bde52a363fa6a7b26da98ae6cf8af06311bd9fe2f5729d1759621238cc33437abb9b0fbf01d80a6f6a80a7871fd687e9fe047efcb8cc05c5a3cdc0cdf7e4a7d9 SHA512 e291becb8f5b99a11b75779f7a549681fb38cf04fe15516225caadf2672dda8ed5db9e24030c5cd3c261f5fc2b6d96d7e078aa9076e3fd46dfce39afc5681515 -AUX blis-0.5.2-gh313.patch 8758 BLAKE2B 52c3ed408b231070a4301b423652076f8d9b13ef570f9313b5705802d1faa0bec412e47bf30b34b6c0f7a9b71c1f5134562c13f41bdf84ac5074ab5f1d59b533 SHA512 d72f85b879f7768c5f6b166b288b974a6767d757fdb8c46e5e8a970a27ca45cf4dbab79e716ecb75dda49ef4e0675b8dffa94924bdc2f554dbe3a3ca16d2f12b -AUX blis-0.5.2-rpath.patch 384 BLAKE2B f5a0390384d30d2929fcb5ff22424770dc3b6a4b9e3796b675a0237d9a1971c358463d5a98aee2f4851396b81b85f67d49e8015e94ce433d2b3a6f7f17e54b15 SHA512 626acf971adfdcee9d8578283f64f2e4e5dad14da4a6d38b7198635c775823312b54cd1b11e3f4a79e79716358f1f4260d5b88be74705ae6ec4eb3fd4ce2723a AUX blis-0.6.0-blas-provider.patch 581 BLAKE2B bde52a363fa6a7b26da98ae6cf8af06311bd9fe2f5729d1759621238cc33437abb9b0fbf01d80a6f6a80a7871fd687e9fe047efcb8cc05c5a3cdc0cdf7e4a7d9 SHA512 e291becb8f5b99a11b75779f7a549681fb38cf04fe15516225caadf2672dda8ed5db9e24030c5cd3c261f5fc2b6d96d7e078aa9076e3fd46dfce39afc5681515 AUX blis-0.6.0-rpath.patch 384 BLAKE2B f5a0390384d30d2929fcb5ff22424770dc3b6a4b9e3796b675a0237d9a1971c358463d5a98aee2f4851396b81b85f67d49e8015e94ce433d2b3a6f7f17e54b15 SHA512 626acf971adfdcee9d8578283f64f2e4e5dad14da4a6d38b7198635c775823312b54cd1b11e3f4a79e79716358f1f4260d5b88be74705ae6ec4eb3fd4ce2723a AUX cblas.lds 205 BLAKE2B ab2c41b571dbb9b55e36fa5afe4344ed9ef33454f6b7a5cda0726aa7f98a61dcef3065976cc02ab593aad94c5d6c0a23efce726da30673bd06cf57b64e826b93 SHA512 23008248e2b2c221a9ce36c2aca3e2acf58a6d434ffde498a058689af5d16d6e87ab56900508bb0403c5f5a1fc9366b202a7fc44a42d04c409197ec1ec164408 -DIST blis-0.5.2.tar.gz 3502383 BLAKE2B b09fda20711086c8bde0d4efc3f3c9b0f6072e1ddb8bd2846465877f0353cced27548abe1239b6a042fe655e85e4b7b3c960322e39b2c733866b8e17777718bd SHA512 4f91a7834ef0ed39544dd21856814467416a222240050cca323917b0fc61b9201ae4dbd109aa687cdecb27ddee5d6bf4510ef023e1c1dc73599faef0482d3d04 DIST blis-0.6.0.tar.gz 5107257 BLAKE2B cd589ad1216486e8bb0cf574cc096c1e1f2bb9587b182c2bcff44db322468d9f027323c0bf2d22ea0fabb1902dc047d2bf62253ef1c2797fc3de9ba53d7fc34a SHA512 74e9da5146f7986cbd11651d7cd0837562a1603c667b9e6d3f79b5057443de657b60d7463cb2d64daf3eff7d33fc05a64e6d8eb807f4cabe0c3121517924a206 -EBUILD blis-0.5.2.ebuild 2723 BLAKE2B 40dcf18e979919a8e0d6db45f62e8e218e982f2cbd81f5a79f727b6076ccf4397e6a5726ada262e1247fc4ebe4788f6d9f26b3736566d31053954e68ac748f26 SHA512 0c1a18dd5449205a81f3366cec57fac0f41fce56bc65d68675044eb5ba647ddb9d0a717798c55c20685921015d35cd0824184ebbb2dfd73a780e0da7934f6ce8 EBUILD blis-0.6.0.ebuild 2681 BLAKE2B b0943a40e4203be06814a6e2503227408bcafa96f8e9eecfd18d8c1da994b8b16a4e8c56963429ec7f28b2430d1eefd85bb7795bc054d468dbb3182e560b8aac SHA512 94d21522cc6bae9c9944fe49b21aa614949cb5012a9f4325fcc9be4eccaec7218a90e25c3a39ce8adf1e49db2b0e90dd1f58ab3d3dafa023bddd7329cd15e9c4 MISC metadata.xml 1608 BLAKE2B c8026b4a933bd7f14e7c446ea5d4bda580532252e52194b058d97daaa38969c661d5dbd86d230f44d2c77d52798962ca2953b1d88490fe284629777e763a5ee7 SHA512 b7ce333449f22acb746fed9913850e226e2e6bd6573537996f43f402b055f20b5ca5fe511eda8aa220939dd8194937eb65e8bec34bf61280ddf90722563ab037 diff --git a/sci-libs/blis/blis-0.5.2.ebuild b/sci-libs/blis/blis-0.5.2.ebuild deleted file mode 100644 index 541964924991..000000000000 --- a/sci-libs/blis/blis-0.5.2.ebuild +++ /dev/null @@ -1,108 +0,0 @@ -# Copyright 2019-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) -inherit python-any-r1 - -DESCRIPTION="BLAS-like Library Instantiation Software Framework" -HOMEPAGE="https://github.com/flame/blis" -SRC_URI="https://github.com/flame/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~ppc64 ~x86" -IUSE="openmp pthread serial static-libs eselect-ldso doc 64bit-index" -REQUIRED_USE="?? ( openmp pthread serial ) ?? ( eselect-ldso 64bit-index )" - -RDEPEND="eselect-ldso? ( !app-eselect/eselect-cblas - >=app-eselect/eselect-blas-0.2 )" - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} -" - -PATCHES=( - "${FILESDIR}/${P}-rpath.patch" - "${FILESDIR}/${P}-blas-provider.patch" - "${FILESDIR}/${P}-gh313.patch" -) - -src_configure() { - local BLIS_FLAGS=() - local confname - # determine flags - if use openmp; then - BLIS_FLAGS+=( -t openmp ) - elif use pthread; then - BLIS_FLAGS+=( -t pthreads ) - else - BLIS_FLAGS+=( -t no ) - fi - use 64bit-index && BLIS_FLAGS+=( -b 64 -i 64 ) - # determine config name - case "${ARCH}" in - "x86" | "amd64") - confname=auto ;; - "ppc64") - confname=generic ;; - *) - confname=generic ;; - esac - # This is not an autotools configure file. We don't use econf here. - ./configure \ - --enable-verbose-make \ - --prefix="${BROOT}"/usr \ - --libdir="${BROOT}"/usr/$(get_libdir) \ - $(use_enable static-libs static) \ - --enable-blas \ - --enable-cblas \ - "${BLIS_FLAGS[@]}" \ - --enable-shared \ - $confname || die -} - -src_compile() { - DEB_LIBBLAS=libblas.so.3 DEB_LIBCBLAS=libcblas.so.3 \ - LDS_BLAS="${FILESDIR}"/blas.lds LDS_CBLAS="${FILESDIR}"/cblas.lds \ - default -} - -src_test() { - emake check -} - -src_install() { - default - use doc && dodoc README.md docs/*.md - - if use eselect-ldso; then - dodir /usr/$(get_libdir)/blas/blis - insinto /usr/$(get_libdir)/blas/blis - doins lib/*/lib{c,}blas.so.3 - dosym libblas.so.3 usr/$(get_libdir)/blas/blis/libblas.so - dosym libcblas.so.3 usr/$(get_libdir)/blas/blis/libcblas.so - fi -} - -pkg_postinst() { - use eselect-ldso || return - - local libdir=$(get_libdir) me="blis" - - # check blas - eselect blas add ${libdir} "${EROOT}"/usr/${libdir}/blas/${me} ${me} - local current_blas=$(eselect blas show ${libdir} | cut -d' ' -f2) - if [[ ${current_blas} == "${me}" || -z ${current_blas} ]]; then - eselect blas set ${libdir} ${me} - elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." - else - elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." - elog "To use blas [${me}] implementation, you have to issue (as root):" - elog "\t eselect blas set ${libdir} ${me}" - fi -} - -pkg_postrm() { - use eselect-ldso && eselect blas validate -} diff --git a/sci-libs/blis/files/blis-0.5.2-blas-provider.patch b/sci-libs/blis/files/blis-0.5.2-blas-provider.patch deleted file mode 100644 index 5999f847929c..000000000000 --- a/sci-libs/blis/files/blis-0.5.2-blas-provider.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/Makefile b/Makefile -index 2d31fee..7008682 100644 ---- a/Makefile -+++ b/Makefile -@@ -659,6 +659,8 @@ else - @$(LINKER) $(SOFLAGS) -o $(LIBBLIS_SO_OUTPUT_NAME) $? $(LDFLAGS) - endif - endif -+ $(LINKER) $(SOFLAGS) -o $(BASE_LIB_PATH)/$(DEB_LIBBLAS) $? $(LDFLAGS) -Wl,--soname,$(DEB_LIBBLAS) -Wl,--version-script=$(LDS_BLAS) -+ $(LINKER) $(SOFLAGS) -o $(BASE_LIB_PATH)/$(DEB_LIBCBLAS) $? $(LDFLAGS) -Wl,--soname,$(DEB_LIBCBLAS) -Wl,--version-script=$(LDS_CBLAS) - - # Local symlink for shared library. - # NOTE: We use a '.loc' suffix to avoid filename collisions in case this diff --git a/sci-libs/blis/files/blis-0.5.2-gh313.patch b/sci-libs/blis/files/blis-0.5.2-gh313.patch deleted file mode 100644 index fab3a8a09ee3..000000000000 --- a/sci-libs/blis/files/blis-0.5.2-gh313.patch +++ /dev/null @@ -1,187 +0,0 @@ -diff --git a/common.mk b/common.mk -index 5513098a5..999df774b 100644 ---- a/common.mk -+++ b/common.mk -@@ -118,7 +118,8 @@ get-noopt-cxxflags-for = $(strip $(CFLAGS_PRESET) \ - get-refinit-cflags-for = $(strip $(call load-var-for,COPTFLAGS,$(1)) \ - $(call get-noopt-cflags-for,$(1)) \ - -DBLIS_CNAME=$(1) \ -- $(BUILD_FLAGS) \ -+ $(BUILD_CPPFLAGS) \ -+ $(BUILD_SYMFLAGS) \ - ) - - get-refkern-cflags-for = $(strip $(call load-var-for,CROPTFLAGS,$(1)) \ -@@ -126,23 +127,27 @@ get-refkern-cflags-for = $(strip $(call load-var-for,CROPTFLAGS,$(1)) \ - $(call get-noopt-cflags-for,$(1)) \ - $(COMPSIMDFLAGS) \ - -DBLIS_CNAME=$(1) \ -- $(BUILD_FLAGS) \ -+ $(BUILD_CPPFLAGS) \ -+ $(BUILD_SYMFLAGS) \ - ) - - get-config-cflags-for = $(strip $(call load-var-for,COPTFLAGS,$(1)) \ - $(call get-noopt-cflags-for,$(1)) \ -- $(BUILD_FLAGS) \ -+ $(BUILD_CPPFLAGS) \ -+ $(BUILD_SYMFLAGS) \ - ) - - get-frame-cflags-for = $(strip $(call load-var-for,COPTFLAGS,$(1)) \ - $(call get-noopt-cflags-for,$(1)) \ -- $(BUILD_FLAGS) \ -+ $(BUILD_CPPFLAGS) \ -+ $(BUILD_SYMFLAGS) \ - ) - - get-kernel-cflags-for = $(strip $(call load-var-for,CKOPTFLAGS,$(1)) \ - $(call load-var-for,CKVECFLAGS,$(1)) \ - $(call get-noopt-cflags-for,$(1)) \ -- $(BUILD_FLAGS) \ -+ $(BUILD_CPPFLAGS) \ -+ $(BUILD_SYMFLAGS) \ - ) - - # When compiling sandboxes, we use flags similar to those of general framework -@@ -153,19 +158,24 @@ get-kernel-cflags-for = $(strip $(call load-var-for,CKOPTFLAGS,$(1)) \ - get-sandbox-c99flags-for = $(strip $(call load-var-for,COPTFLAGS,$(1)) \ - $(call get-noopt-cflags-for,$(1)) \ - $(CSBOXINCFLAGS) \ -- $(BUILD_FLAGS) \ -+ $(BUILD_CPPFLAGS) \ -+ $(BUILD_SYMFLAGS) \ - ) - get-sandbox-cxxflags-for = $(strip $(call load-var-for,COPTFLAGS,$(1)) \ - $(call get-noopt-cxxflags-for,$(1)) \ - $(CSBOXINCFLAGS) \ -- $(BUILD_FLAGS) \ -+ $(BUILD_CPPFLAGS) \ -+ $(BUILD_SYMFLAGS) \ - ) - - # Define a separate function that will return appropriate flags for use by - # applications that want to use the same basic flags as those used when BLIS --# was compiled. (This is the same as get-frame-cflags-for(), except that it --# omits the BUILD_FLAGS, which are exclusively for use when BLIS is being --# compiled.) -+# was compiled. (NOTE: This is the same as the $(get-frame-cflags-for ...) -+# function, except that it omits two variables that contain flags exclusively -+# for use when BLIS is being compiled/built: BUILD_CPPFLAGS, which contains a -+# cpp macro that confirms that BLIS is being built; and BUILD_SYMFLAGS, which -+# contains symbol export flags that are only needed when a shared library is -+# being compiled/linked.) - get-user-cflags-for = $(strip $(call load-var-for,COPTFLAGS,$(1)) \ - $(call get-noopt-cflags-for,$(1)) \ - ) -@@ -627,22 +637,26 @@ $(foreach c, $(CONFIG_LIST_FAM), $(eval $(call append-var-for,CPICFLAGS,$(c)))) - - # --- Symbol exporting flags (shared libraries only) --- - -+# NOTE: These flags are only applied when building BLIS and not used by -+# applications that import BLIS compilation flags via the -+# $(get-user-cflags-for ...) function. -+ - # Determine default export behavior / visibility of symbols for gcc. - ifeq ($(CC_VENDOR),gcc) - ifeq ($(IS_WIN),yes) - ifeq ($(EXPORT_SHARED),all) --CMISCFLAGS := -Wl,--export-all-symbols, -Wl,--enable-auto-import -+BUILD_SYMFLAGS := -Wl,--export-all-symbols, -Wl,--enable-auto-import - else # ifeq ($(EXPORT_SHARED),public) --CMISCFLAGS := -Wl,--exclude-all-symbols -+BUILD_SYMFLAGS := -Wl,--exclude-all-symbols - endif - else # ifeq ($(IS_WIN),no) - ifeq ($(EXPORT_SHARED),all) - # Export all symbols by default. --CMISCFLAGS := -fvisibility=default -+BUILD_SYMFLAGS := -fvisibility=default - else # ifeq ($(EXPORT_SHARED),public) - # Hide all symbols by default and export only those that have been annotated - # as needing to be exported. --CMISCFLAGS := -fvisibility=hidden -+BUILD_SYMFLAGS := -fvisibility=hidden - endif - endif - endif -@@ -653,11 +667,11 @@ endif - ifeq ($(CC_VENDOR),icc) - ifeq ($(EXPORT_SHARED),all) - # Export all symbols by default. --CMISCFLAGS := -fvisibility=default -+BUILD_SYMFLAGS := -fvisibility=default - else # ifeq ($(EXPORT_SHARED),public) - # Hide all symbols by default and export only those that have been annotated - # as needing to be exported. --CMISCFLAGS := -fvisibility=hidden -+BUILD_SYMFLAGS := -fvisibility=hidden - endif - endif - -@@ -667,27 +681,25 @@ ifeq ($(IS_WIN),yes) - ifeq ($(EXPORT_SHARED),all) - # NOTE: clang on Windows does not appear to support exporting all symbols - # by default, and therefore we ignore the value of EXPORT_SHARED. --CMISCFLAGS := -+BUILD_SYMFLAGS := - else # ifeq ($(EXPORT_SHARED),public) - # NOTE: The default behavior of clang on Windows is to hide all symbols - # and only export functions and other declarations that have beenannotated - # as needing to be exported. --CMISCFLAGS := -+BUILD_SYMFLAGS := - endif - else # ifeq ($(IS_WIN),no) - ifeq ($(EXPORT_SHARED),all) - # Export all symbols by default. --CMISCFLAGS := -fvisibility=default -+BUILD_SYMFLAGS := -fvisibility=default - else # ifeq ($(EXPORT_SHARED),public) - # Hide all symbols by default and export only those that have been annotated - # as needing to be exported. --CMISCFLAGS := -fvisibility=hidden -+BUILD_SYMFLAGS := -fvisibility=hidden - endif - endif - endif - --$(foreach c, $(CONFIG_LIST_FAM), $(eval $(call append-var-for,CMISCFLAGS,$(c)))) -- - # --- Language flags --- - - # Enable C99. -@@ -1026,7 +1038,7 @@ VERS_DEF := -DBLIS_VERSION_STRING=\"$(VERSION)\" - # Define a C preprocessor flag that is *only* defined when BLIS is being - # compiled. (In other words, an application that #includes blis.h will not - # get this cpp macro.) --BUILD_FLAGS := -DBLIS_IS_BUILDING_LIBRARY -+BUILD_CPPFLAGS := -DBLIS_IS_BUILDING_LIBRARY - - - -diff --git a/configure b/configure -index 5b5695cd5..bb21671f0 100755 ---- a/configure -+++ b/configure -@@ -152,13 +152,13 @@ print_usage() - echo " functions and variables that belong to public APIs are" - echo " exported in shared libraries. However, the user may" - echo " instead export all symbols in BLIS, even those that were" -- echo " intended for internal use only. Note Note that the public" -- echo " APIs encompass all functions that almost any user would" -- echo " ever want to call, including the BLAS/CBLAS compatibility" -- echo " APIs as well as the basic and expert interfaces to the" -- echo " typed and object APIs that are unique to BLIS. Also note" -- echo " that changing this option to 'all' will have no effect in" -- echo " some environments, such as when compiling with clang on" -+ echo " intended for internal use only. Note that the public APIs" -+ echo " encompass all functions that almost any user would ever" -+ echo " want to call, including the BLAS/CBLAS compatibility APIs" -+ echo " as well as the basic and expert interfaces to the typed" -+ echo " and object APIs that are unique to BLIS. Also note that" -+ echo " changing this option to 'all' will have no effect in some" -+ echo " environments, such as when compiling with clang on" - echo " Windows." - echo " " - echo " -t MODEL, --enable-threading[=MODEL], --disable-threading" diff --git a/sci-libs/blis/files/blis-0.5.2-rpath.patch b/sci-libs/blis/files/blis-0.5.2-rpath.patch deleted file mode 100644 index a8b5a46870d1..000000000000 --- a/sci-libs/blis/files/blis-0.5.2-rpath.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/common.mk b/common.mk -index ef0acfb..e1ce31d 100644 ---- a/common.mk -+++ b/common.mk -@@ -527,7 +527,7 @@ LIBBLIS_L := $(LIBBLIS_SO) - LIBBLIS_LINK := $(LIBBLIS_SO_PATH) - ifeq ($(IS_WIN),no) - # For Linux and OS X: set rpath property of shared object. --LDFLAGS += -Wl,-rpath,$(BASE_LIB_PATH) -+#LDFLAGS += -Wl,-rpath,$(BASE_LIB_PATH) - endif - endif - endif diff --git a/sci-libs/camd/Manifest b/sci-libs/camd/Manifest index c1a8e0651cb7..0e764ad45885 100644 --- a/sci-libs/camd/Manifest +++ b/sci-libs/camd/Manifest @@ -1,3 +1,5 @@ +AUX camd-2.4.6-dash_doc.patch 498 BLAKE2B 93871bfdc9fbe1bc77f7cdc66d18d7517e318edcdbc09e1efa63a9400de5a3e91fa1febdc24394743b710090d7a78fc9e864732c4979db73f679cbd008fea670 SHA512 61a38299792ade16a067e7960d5922ffeb6be838eab73f8be493b999c9256875a07b28066e1965b59f9d9e5f63f616a1674f8987ff847e49ac4ff2a8fe05c73f DIST camd-2.4.6.tar.bz2 317071 BLAKE2B 8f982050a20f00c9443063a0473caa4aa27efe005fe07b503cb68b29499152561fc9d30d00783607b1e8fb8af88707eabfe22d192b80e375b8a6d04d7a9a26d7 SHA512 c4020ed3e063d04f5d7d1a301719b1a5b5b912d505858f046654c9d283c41ff01d55f668fb7f7179a6ac636f5a5b80f71cac5eb5b1e5cae0ede97d946d62a1d0 +EBUILD camd-2.4.6-r1.ebuild 838 BLAKE2B 1688eac8d02dcc5475bc8ee099bad9c1b1bf0613c625d3887409d0cf28589e44e796062b31010402637382111a9010095faa1dec92e5d7081a321fff641182b7 SHA512 4f9f5fc06a801cf177d3c8b497da68c5205bdd9a9e5cabec6839f0fdec1ebd7c73de38a6c4efdaf53d79ccdad2d73135249c6e58f63f3df26467b0fe5ee12b28 EBUILD camd-2.4.6.ebuild 717 BLAKE2B aaea2b067e019608d3bd31ec989d25b926299da54b35fb9b60e0b9bfcd050e9c7ddddf987c9d1b36de838fd3360812d3ded619b576e4f042f9f3dc9e243b84df SHA512 3344d69aec563ab8d21a0aacdc6a14587b182bd460f4849a396ecd51fd2a2ee63bd483eddcafb12c489c23369356a3f4eeb14a7369da11d55f4d93616058c950 MISC metadata.xml 494 BLAKE2B 456f4ab539ab7303849cfabfda3e07987874a833e5691d6c3336ebb8a86cc6d5cc5fe8c20b65d8e5fdd8da1c947b9e7ff8eedfd2cc17da6040ff5d109b1b110d SHA512 6402783aec0922669bbf45477074644a9b10f44b0b06bf86ad9b4ecbab124076ee7f19c2c68c6eb3bf21a1569a3410f1ed0ac12f653dd5808559da133613d09f diff --git a/sci-libs/camd/camd-2.4.6-r1.ebuild b/sci-libs/camd/camd-2.4.6-r1.ebuild new file mode 100644 index 000000000000..fb5a430ed408 --- /dev/null +++ b/sci-libs/camd/camd-2.4.6-r1.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools + +DESCRIPTION="Library to order a sparse matrix prior to Cholesky factorization" +HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html" +SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux" +IUSE="doc" + +BDEPEND="virtual/pkgconfig + doc? ( virtual/latex-base )" +DEPEND=">=sci-libs/suitesparseconfig-5.4.0" +RDEPEND="${DEPEND}" + +PATCHES=( "${FILESDIR}"/${PN}-2.4.6-dash_doc.patch ) + +src_prepare(){ + default + + eautoreconf +} + +src_configure() { + econf \ + --disable-static \ + $(use_with doc) +} + +src_install() { + default + + # no static archives + find "${D}" -name '*.la' -delete || die +} diff --git a/sci-libs/camd/files/camd-2.4.6-dash_doc.patch b/sci-libs/camd/files/camd-2.4.6-dash_doc.patch new file mode 100644 index 000000000000..c70ed070f2a3 --- /dev/null +++ b/sci-libs/camd/files/camd-2.4.6-dash_doc.patch @@ -0,0 +1,16 @@ +diff --git a/Doc/Makefile.am b/Doc/Makefile.am +index 80f5653..71c130a 100644 +--- a/Doc/Makefile.am ++++ b/Doc/Makefile.am +@@ -1,9 +1,8 @@ + + CAMD_UserGuide.pdf: +- echo '\begin{verbatim}' > camd_h.tex ++ printf '\\begin{verbatim}\n' > camd_h.tex + expand -8 $(top_srcdir)/Include/camd.h >> camd_h.tex +- echo '\end{verbatim}' >> camd_h.tex +- -ln -s $(srcdir)/*.{tex,bib} . ++ printf '\\end{verbatim}\n' >> camd_h.tex + $(PDFLATEX) CAMD_UserGuide + $(BIBTEX) CAMD_UserGuide + $(PDFLATEX) CAMD_UserGuide diff --git a/sci-libs/cantera/Manifest b/sci-libs/cantera/Manifest index 264a01cf4562..186fd4bdfac6 100644 --- a/sci-libs/cantera/Manifest +++ b/sci-libs/cantera/Manifest @@ -1,8 +1,6 @@ AUX cantera_2.4.0_env.patch 3559 BLAKE2B 07af1b751b653b1c92288286b9c82ef230ea0df7d9ea4036d23ac24338a221cc45c8e74f137fcf741bb9bb7148e7f3339f54234e9a92ac939956ba7c0ca8e157 SHA512 f2574c3de42d1666a2b64914c66d97045a2a3598f63678b3b60a701d111d7bfc9bd71031dd665a64e6791c9f311fb9514b1a0462a5713763a1b5f87fcd72e528 -AUX cantera_2.4.0_env_python_install.patch 1001 BLAKE2B bfe6e69332117526d8a7c330ae9610e26e72a9e250ce04beda564149fbd21f3262f36982971e5ec0c552e09f12804172b7f978ab03bfb98c0dbe92cd8c7d9401 SHA512 410a81b4ec69eb6eb2a60d55d142b266b836da5a7d4e4ae2fd8844fb87eff0f3544f6e370fc354d334c6cd5a61f8364842c8a9b3bd0dc2290f58ee7392a170f4 AUX cantera_2.4.0_env_python_install_prefix.patch 943 BLAKE2B 06bc4ac2cc4aaa212325c3883b9cead668ed294f23a2ac768f28e593916d07f2322e21846b97b40e336dfc742ed45a9b95f8f49531cd82d2055499f810e13c2f SHA512 a7ebfd8f9a6fa406d5a5847ad98e91aa9cbf53d194ec87d8479b88ad322df13308947fae61574ebd6254eeaa1bcb49a4cd3e30db2981cebcbf13241ab8e050d6 AUX cantera_2.4.0_sundials4.patch 8410 BLAKE2B dbee09305610bb0d74c1569d694782194c0cb3daf06b581fa385021faed9d54d8f900747bdcac64b0322dcc82fee20bc330b71bee1aa90fe9df68efc335427b7 SHA512 ec4b80b761c3d18cc03bb87ec59b7c860b6818c3a5503f3f7c759f0bfde7cc6c5ded3c64294f9844e28a649754f4a1c158738bc5a7c923bd4808a78c6a59c91a DIST cantera-2.4.0.tar.gz 2321316 BLAKE2B 40750e3864afa3d35817e6f5777a6ac235261e9d134ef749966dbd738a2af5efec2882e6dcc719851f88656b41469e2159d3bff3df32f6abdf57db3b0a2afcae SHA512 8bb0fee34fa5bc9ec78e6f21a100eaa77bdd966bd0b7f0fa27d452e4f122c69e61648beef847178490f5c5d56267a96f6081cac9ccd03cea153c32814e0e84e9 -EBUILD cantera-2.4.0-r4.ebuild 3028 BLAKE2B cacb43b61a63aba2ae8a55393ff8f0ea93c0bbea9266f182d3ac270e822b09a16865da60076e6ea059bc1c684c9a13e7291f3aed037ca2fa79c48d0844fd5051 SHA512 c3f361945f1d4756f8251fc3122a4b8ba36e5f5723c4d71742f8d089a41614669ecaf5462a8e2d5945b09611eda3a98f4d91736ca253202c44d1a6fd6cb22705 EBUILD cantera-2.4.0-r5.ebuild 3071 BLAKE2B e4a48b20a7446b1f521d2542c111f40603e708aef5940bee16447070cf00fd20e4f73778d054e33e68b92b0ae028dc8fbd89b0817367dcbeb96bc51305f13488 SHA512 0422fdea1f33a1e50aa6ec771234a87929c0827add0afc7cc2618db0cf275657b33d9f7aa95064eda4f2508d2cf7c5015c92d036058dda1838bd45d3b41cf68e MISC metadata.xml 794 BLAKE2B 4a92fb553aad7d87d4b7a8d77974dbd67d593b4010783f96324979d9c01067bccc60d2faedf604bd8d44a8ac4316356879301899af8bc08d0fcd548df6d3762d SHA512 a9e6f4e161519d0b3618fe8da7065195bc760ba889fa4356358d4047ea1970eb5fd78bdc5fbeb7c660f1bee48a68ab20ced636514e6f12848e88f6f4dabc9705 diff --git a/sci-libs/cantera/cantera-2.4.0-r4.ebuild b/sci-libs/cantera/cantera-2.4.0-r4.ebuild deleted file mode 100644 index d3f8fb2e514b..000000000000 --- a/sci-libs/cantera/cantera-2.4.0-r4.ebuild +++ /dev/null @@ -1,131 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{6,7,8} ) - -FORTRAN_NEEDED=fortran -FORTRAN_STANDARD=90 - -inherit desktop fortran-2 python-single-r1 scons-utils toolchain-funcs - -DESCRIPTION="Object-oriented tool suite for chemical kinetics, thermodynamics, and transport" -HOMEPAGE="https://www.cantera.org" -SRC_URI="https://github.com/Cantera/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="amd64 ~x86" -IUSE="+cti fortran pch +python test" -RESTRICT="!test? ( test )" - -REQUIRED_USE=" - python? ( cti ) - ${PYTHON_REQUIRED_USE} - " - -RDEPEND=" - ${PYTHON_DEPS} - python? ( - $(python_gen_cond_dep ' - dev-python/numpy[${PYTHON_MULTI_USEDEP}] - ') - ) - <sci-libs/sundials-5.2.0:0= -" - -DEPEND=" - ${RDEPEND} - dev-cpp/eigen:3 - dev-libs/boost - dev-libs/libfmt - python? ( - $(python_gen_cond_dep ' - dev-python/cython[${PYTHON_MULTI_USEDEP}] - ') - ) - test? ( - >=dev-cpp/gtest-1.8.0 - ) -" - -PATCHES=( - "${FILESDIR}/${PN}_${PV}_env.patch" - "${FILESDIR}/${PN}_${PV}_env_python_install.patch" - "${FILESDIR}/${PN}_${PV}_sundials4.patch" - ) - -pkg_setup() { - fortran-2_pkg_setup - python-single-r1_pkg_setup -} - -## Full list of configuration options of Cantera is presented here: -## http://cantera.org/docs/sphinx/html/compiling/config-options.html - -src_configure() { - scons_vars=( - CC="$(tc-getCC)" - CXX="$(tc-getCXX)" - cc_flags="${CXXFLAGS}" - cxx_flags="-std=c++11" - debug="no" - FORTRAN="$(tc-getFC)" - FORTRANFLAGS="${CXXFLAGS}" - optimize_flags="-Wno-inline" - renamed_shared_libraries="no" - use_pch=$(usex pch) -## In some cases other order can break the detection of right location of Boost: ## - system_fmt="y" - system_sundials="y" - system_eigen="y" - env_vars="all" - extra_inc_dirs="/usr/include/eigen3" - ) - use test || scons_vars+=( googletest="none" ) - - scons_targets=( - f90_interface=$(usex fortran y n) - python2_package="none" - ) - - if use cti ; then - local scons_python=$(usex python full minimal) - scons_targets+=( python3_package="${scons_python}" python3_cmd="${EPYTHON}" ) - else - scons_targets+=( python3_package="none" ) - fi -} - -src_compile() { - escons build "${scons_vars[@]}" "${scons_targets[@]}" prefix="/usr" -} - -src_test() { - escons test -} - -src_install() { - escons install stage_dir="${D}" libdirname="$(get_libdir)" - if ! use cti ; then - rm -r "${D}/usr/share/man" || die "Can't remove man files." - else - # Run the byte-compile of modules - python_optimize "${D}/$(python_get_sitedir)/${PN}" - fi -} - -pkg_postinst() { - if use cti && ! use python ; then - elog "Cantera was build without 'python' use-flag therefore the CTI tool 'ck2cti'" - elog "will convert Chemkin files to Cantera format without verification of kinetic mechanism." - fi - - local post_msg=$(usex fortran "and Fortran " "") - elog "C++ ${post_msg}samples are installed to '/usr/share/${PN}/samples/' directory." - - if use python ; then - elog "Python examples are installed to '$(python_get_sitedir)/${PN}/examples/' directories." - fi -} diff --git a/sci-libs/cantera/files/cantera_2.4.0_env_python_install.patch b/sci-libs/cantera/files/cantera_2.4.0_env_python_install.patch deleted file mode 100644 index 2e01fed1fa93..000000000000 --- a/sci-libs/cantera/files/cantera_2.4.0_env_python_install.patch +++ /dev/null @@ -1,17 +0,0 @@ -diff -Nur old/interfaces/cython/SConscript new/interfaces/cython/SConscript ---- old/interfaces/cython/SConscript 2018-08-24 16:24:45.000000000 +0300 -+++ new/interfaces/cython/SConscript 2019-08-14 04:28:41.000000000 +0300 -@@ -83,10 +83,10 @@ - extra = '' - elif localenv['OS'] == 'Darwin': - extra = localenv.subst(' --prefix=${python%s_prefix}' % major) -- elif localenv['libdirname'] == 'lib64': -- # 64-bit RHEL / Fedora -+ elif localenv['libdirname'] != 'lib': -+ # 64-bit RHEL / Fedora etc. or e.g. x32 Gentoo profile - extra = localenv.subst( -- ' --prefix=${python%s_prefix} --install-lib=${python%s_prefix}/lib64/python%s.%s/site-packages' % (major, major, major, minor)) -+ ' --prefix=${python%s_prefix} --install-lib=${python%s_prefix}/${libdirname}/python%s.%s/site-packages' % (major, major, major, minor)) - else: - extra = '--user' - localenv.AppendENVPath( diff --git a/sci-libs/cfitsio/Manifest b/sci-libs/cfitsio/Manifest index 149ffa3a2792..d1cc32f28e93 100644 --- a/sci-libs/cfitsio/Manifest +++ b/sci-libs/cfitsio/Manifest @@ -6,5 +6,5 @@ DIST cfitsio-3.410.tar.gz 4194529 BLAKE2B 31250b9add5b6a85c919c33251d127117ceab8 DIST cfitsio-3.49.tar.gz 4934662 BLAKE2B ca8b701f0fec399d989efb61fdaa2bfbf49d0eea2d3ff47e156757c5a99bc77c23a1b91b4c91166696293c71c78210065dc48d0bb3c77039815f326d0ed55f0a SHA512 9836a4af3bbbfed1ea1b4c70b9d500ac485d7c3d8131eb8a25ee6ef6662f46ba52b5161c45c709ed9a601ff0e9ec36daa5650eaaf4f2cc7d6f4bb5640f10da15 EBUILD cfitsio-3.360.ebuild 1433 BLAKE2B 79dc499048a4c08bec4fe8d11a99ea5bf064716460ae2a80530ca8dd073fc0f00647edacb3f3206cece007e34a3ead466e3d2e1264c6429c9de888a3c3c61a19 SHA512 09c143480ef52b7d979aca2b76b7fa127eba383636e186bcc4d811ec03905a01bba9c018788bdbd2d8864e1746c71f80853de4fcfca45e17f29f73bc819adc9c EBUILD cfitsio-3.410.ebuild 1565 BLAKE2B 72d14e52ecd130a4db75b36f673e6b18b471a24ef508e1b91d8cdf624bdb134d874c4514aa47d7eecf280e9d7e2e004e1d7361c0c60e10669ef95081f805e132 SHA512 31777199cabaad85b790099a21b777e2b0edab4dc113617e8e6d7e253f9bc7d904a1acbca022e1c680edc94a244c3a1e8c710d4054953a874be11abc2e399c47 -EBUILD cfitsio-3.490.ebuild 1687 BLAKE2B 21c2aad5ba9e9de0f34a1d7bd7622bcfa2134025e91cc96e32a2cc368d7f1f1a3104c483fe50da4e7ec8427325520ae850174dc0aa692a41ed4544c879a33afa SHA512 be01b1dc328ffbc2489e9901f8a69d56502e21ef37f7952f57f174713b2698e5dedda3bd8c14d2fdfd939383f6c5f79c33471b61c5d3286f4a666362a1d19c43 +EBUILD cfitsio-3.490.ebuild 1686 BLAKE2B d0c6ae3ca97256014b099d06e1e6845cab85de45687dd0382885fd3ff546ae9de8c232a47c034aecd0dbdbdc47cd971c48530280ef302faf5ee9e7682cf67228 SHA512 875024f7b8fad89b808353c899fd28406877c8b5a013de903822967ae9729d8829d8ef0e18db45441425bc6c5c1ec4e1f8f505e35224d5c32b88b528fd9c8f0c MISC metadata.xml 840 BLAKE2B 6f024cc96a9da7bef155b5138d55b518a1ae917af045cd2970227ca1993461659eea8883dc3b6b9e4d3d2aaa5c49b4900e122dbb83a437aa3d94351c333934d7 SHA512 946044116d9a865e3b7e883b41f7d74a3f54c72cd857aed4dcb454cfe559385004b3e55562a306bfa3347cfc035a5af9a5aaa8a4d8dc7fe154b8d0dae7a7390b diff --git a/sci-libs/cfitsio/cfitsio-3.490.ebuild b/sci-libs/cfitsio/cfitsio-3.490.ebuild index 84e2489d6d5c..d3052d10eec6 100644 --- a/sci-libs/cfitsio/cfitsio-3.490.ebuild +++ b/sci-libs/cfitsio/cfitsio-3.490.ebuild @@ -13,7 +13,7 @@ S="${WORKDIR}/${MY_P}" LICENSE="ISC" SLOT="0/9" -KEYWORDS="~alpha amd64 ~hppa ppc ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~sparc-solaris ~sparc64-solaris" +KEYWORDS="~alpha amd64 ~hppa ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~sparc-solaris ~sparc64-solaris" IUSE="bzip2 curl cpu_flags_x86_sse2 cpu_flags_x86_ssse3" BDEPEND=" diff --git a/sci-libs/cgnslib/Manifest b/sci-libs/cgnslib/Manifest index 03cd56cf491a..680b3882366e 100644 --- a/sci-libs/cgnslib/Manifest +++ b/sci-libs/cgnslib/Manifest @@ -1,5 +1,3 @@ -DIST cgnslib-3.3.0.tar.gz 3314889 BLAKE2B 3b8af11e04c211ca60f512c7995e9b23e0dd79180f3443f238562216073740de6b845c5bb78d6fb017bbf41e5249c1f58c27130047fd50afb4b20bbc778a046b SHA512 eb5c79d3830f8ee1fa30a67fbf32133c13a276c4b18a553826e4670bd4aa7262d7751bccb74c5e208cd47703f9076bde2e2e0db70408c88fde3ac11b638e6ff3 DIST cgnslib-3.4.0.tar.gz 3393312 BLAKE2B 279d4502ff70701df6a266495ccc7750e9c51ac14bd3d5072ae8e1448b4f1e4afaefaaf254cf0afe1cc984e4d9fc7d5c161f7696f62726aaf567990ded3c9056 SHA512 e26cfb0d9f3061242d327a6c18fe40ed51bf63b61ae0d6b5cce7e6b4aa623b00e1c3fd9fe240d993323c6f4eec043fde5296a82b1f9108027f945300eec541ec -EBUILD cgnslib-3.3.0.ebuild 2000 BLAKE2B 46ef19a44d29f372e00dea7eefd869e6eb7a19368b9660fe98f905954478b1b2b64235bbc0b385cf8a4b2a98f3f6460d8eb090ea9824fcbe0dd469a210a92223 SHA512 b0267e8f0f1e69cd6008a650c9c9baccb7efbc360d6a81c5a8fb29c5d06b829c834066d335c05e4162d486c34a02ec0dd25059991653182779097d8f368c22f9 EBUILD cgnslib-3.4.0.ebuild 2084 BLAKE2B 51a8a6dd325255f70d60ce55ddc4870f6bee34cc30f7c98672626288be4ac17ae2a274ff31f80ec4262b6dd92cc4ac0513d26863177432674c7edf66a43771c8 SHA512 21b14ae07d64569ae4db22afb03b0623948beb190a99486e00a6565c10ca2adc77345acc75dfb2cde5c1adf9be27f21e34a117bbcfd4741f43ae5cfb59c0fa6f MISC metadata.xml 1126 BLAKE2B 9ee9f1c8457293509d5b8cb4c0b64b4f1dcc7b4858d0f7ba99e79388118be318b8567719ca7deffa8b161e5d0acbba125c63b07baf61864e77f0ae6502f74a34 SHA512 969a67120b9dd3878f479e9ae2e2274c31c477660f1ffec8f67bd033ccd5d35588bd454b8e82efcede970c1393336c3c36f66aedba07b4d8c1b93c053a78efad diff --git a/sci-libs/cgnslib/cgnslib-3.3.0.ebuild b/sci-libs/cgnslib/cgnslib-3.3.0.ebuild deleted file mode 100644 index 3d8fd059480e..000000000000 --- a/sci-libs/cgnslib/cgnslib-3.3.0.ebuild +++ /dev/null @@ -1,78 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED="fortran" -FORTRAN_STANDARD="90 2003" - -inherit cmake-utils fortran-2 - -DESCRIPTION="CFD General Notation System standard library" -HOMEPAGE="http://www.cgns.org/" -SRC_URI="https://github.com/CGNS/CGNS/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="ZLIB" -SLOT="0/3" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples fortran hdf5 legacy mpi static-libs szip test tools" -RESTRICT="!test? ( test )" - -RDEPEND="hdf5? ( sci-libs/hdf5:=[mpi=,szip=] ) - tools? ( - dev-lang/tcl:= - dev-lang/tk:= - x11-libs/libXmu:= - virtual/glu - virtual/opengl - )" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/CGNS-${PV}" - -pkg_setup() { - use fortran && fortran-2_pkg_setup -} - -src_prepare() { - # gentoo libdir - sed -e '/DESTINATION/s|lib)|lib${LIB_SUFFIX})|g' \ - -e 's|lib LIBDIR|lib${LIB_SUFFIX} LIBDIR|' \ - -e 's|/lib"|/lib${LIB_SUFFIX}"|'\ - -i CMakeLists.txt src/CMakeLists.txt || die - # dont hard code link - sed -e '/link_directories/d' \ - -i src/tools/CMakeLists.txt src/cgnstools/*/CMakeLists.txt || die - cmake-utils_src_prepare -} - -src_configure() { - local mycmakeargs=( - -DCGNS_BUILD_SHARED=ON - -DCGNS_USED_SHARED=ON - -DCGNS_BUILD_CGNSTOOLS="$(usex tools)" - -DCGNS_ENABLE_FORTRAN="$(usex fortran)" - -DCGNS_ENABLE_HDF5="$(usex hdf5)" - -DCGNS_ENABLE_LEGACY="$(usex legacy)" - -DCGNS_ENABLE_TESTS="$(usex test)" - -DHDF5_NEED_MPI="$(usex mpi)" - -DHDF5_NEED_SZIP="$(usex szip)" - -DHDF5_NEED_ZLIB="$(usex szip)" - ) - cmake-utils_src_configure -} - -src_compile() { - # hack to allow parallel building by first producing fortran module - use fortran && cd "${BUILD_DIR}"/src && emake cgns_f.o - cmake-utils_src_compile -} - -src_install() { - cmake-utils_src_install - dodoc README.md changelog release_docs/Release.txt - use static-libs || rm "${ED}"/usr/$(get_libdir)/libcgns.a - use doc && dodoc *pdf release_docs/*.pdf - insinto /usr/share/doc/${PF} - use examples && doins -r src/examples -} diff --git a/sci-libs/cholmod/Manifest b/sci-libs/cholmod/Manifest index 5fe1e6cba48f..c02e57f6260a 100644 --- a/sci-libs/cholmod/Manifest +++ b/sci-libs/cholmod/Manifest @@ -4,5 +4,5 @@ DIST cholmod-3.0.13.tar.bz2 696002 BLAKE2B 40a065fe1a3585897b3ca554a25fa80ffc68a DIST cholmod-3.0.14.tar.bz2 696981 BLAKE2B 855927c18833235b3f0835bfba455d83957b9161c0ee885c2d31d126f0f473067f55bcf2cfa163c72efb5de573589ffa54b484a8cf89bc44c9dbf64d43fda5d9 SHA512 f8c12fc3c8787be38bca6c6f84a8279c1380fbe4fabbfba754235fdb042d7050bfb7b5a21ea87ef59dbd5184d28e8cb7667966c38f5dcad78fe8d47111896a3c EBUILD cholmod-2.1.2.ebuild 1749 BLAKE2B ad72937ed0107ff533c0fc9c996c22ce299f989dc040b2162b3c119c851f6b5b23e6de5cef58f4c91ea2cfcfc790ab1c3c3477d0b4854ba40519a69c95cdf4f1 SHA512 eddb839768b745f9deff81454a8f6eade1d25ad2d891f498b8f3c4cca88614e72ac0df6535946929ce96b74f2ff52bca51fdd0b6d90f2e480cdac49d95340f10 EBUILD cholmod-3.0.13.ebuild 1660 BLAKE2B 6f53739a8ea19773b34526ece750fe0e8c2d3ffa221058b4e201bbe6180c55535c9edf902b4a8c576343e5e22cbd3cbb03dd4594a6455d438cacd81450f1f0c0 SHA512 bbd5b01ef11bddcb0d10bea1917ce1b25c6d64321ecae25c63f5070d392f71c62e687847bbae1cc41fccf36db3295dffdf284f47d17de8979f550830037bebd8 -EBUILD cholmod-3.0.14.ebuild 1642 BLAKE2B 8679543c75703ed955e8e9dfafac50f8254e94781ad6d815a974da3a982d47a601c7e7d90820d0ba372f12b11e0760c95a8da4fda8e02c2fa0d7462678340725 SHA512 e7f6240adccc918e9ef083e6c14ff8e5e2f9763f84785e0f2d8696720b35ff43d30a12832f95aa6c17fef2460b542158d09cb413cc2d3522607d6c09a340e3ca +EBUILD cholmod-3.0.14.ebuild 1639 BLAKE2B 2762e6a0cde4b9ee7911474c53b2eacee6df0ab8e98c78a9817670a5cb0f1001e833b2176caed76c438a0247f0f5a844b3d8e40053a66a90429cb8d46d50721c SHA512 8896e21f4162404313414ffffdfc3ab803273039f85ca3348f538e64c42383103dc8efdbe770ad476575e734a9164176ffc889cb04b1b26bc64e063db34e7cf5 MISC metadata.xml 920 BLAKE2B d78c2990bf35b95155adefe8a7b6d3213cd7187d031abbe91f1e12cb2ab438fce1ec34743a21a20b649255c691b87b6033f8bf8eec30b670456c105ad80f2c9a SHA512 64083142e54e0d9df8fb93c8a9ef810c4a6c85546ed8d96413acbadcbe3120d528e15895786e303094874448eeb4b411ce457147f452f781c6184aea985f5e9a diff --git a/sci-libs/cholmod/cholmod-3.0.14.ebuild b/sci-libs/cholmod/cholmod-3.0.14.ebuild index 94e8ad014818..1c71ad12d486 100644 --- a/sci-libs/cholmod/cholmod-3.0.14.ebuild +++ b/sci-libs/cholmod/cholmod-3.0.14.ebuild @@ -11,7 +11,7 @@ SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" LICENSE="LGPL-2.1+ modify? ( GPL-2+ ) matrixops? ( GPL-2+ )" SLOT="0" -KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux" +KEYWORDS="~amd64 arm arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 sparc ~x86 ~amd64-linux ~x86-linux" IUSE="cuda doc +lapack +matrixops +modify +partition" BDEPEND="virtual/pkgconfig diff --git a/sci-libs/cln/Manifest b/sci-libs/cln/Manifest index 093892b63c2f..5d03c80ea129 100644 --- a/sci-libs/cln/Manifest +++ b/sci-libs/cln/Manifest @@ -1,8 +1,3 @@ -AUX cln-1.3.2-arm.patch 340 BLAKE2B e66f245944e4a21f87c64d6c79f8b11fd55d8733fbc3af146a5bf632903a2dac12c1650bb29a04541eab2867b1ede5a73390f5796780d4f55bf6a5bd005c856c SHA512 b16e00091ade3f77f54a88130a5953a8d677cbcc124a89e632266313b42c042cda57da4bececdc4740c1dce366a06593ad5cec21bf047ea43ea4927d2e08e020 -DIST cln-1.3.3.tar.bz2 1300229 BLAKE2B ca7985771d300b2bf0a1e5d6acda90de2596e0a8910c293500c8c218578814a82867ac24b641d3e3a36897a1a0ebf09a136ba6d64c7a1ed61133aa0b89ecacea SHA512 ee829cd03a2d36215a4d4e76cc0aa6c5abe6ff967ed366d752da1dc0c47dbec56e0521e92fb35574c038305fb767991c5c7fd12ad03583080da3f923fbfecdaf -DIST cln-1.3.4.tar.bz2 1281348 BLAKE2B 7681ae5a421f2992e16b48541b46aceb988d697d95d2457fbe2f8c0f7e8ca95e6fbfb0fc309ea29a4669bc3d4fdf9c670fdf25b202019457ffba392f15bf2fa4 SHA512 2178a64b4388b3018c3847f6fb192ea51eb9c8618302986d7706accef17184e3333ddeca218d726f93f3b985598952ad58d705c9081201985611e383f788a631 DIST cln-1.3.6.tar.bz2 1330815 BLAKE2B 89ddd0079ac746b262dac01ae0fc1ceb250956c530883d93430e62866e09fdd964c4f96edb21260f9aa40f739450996e1bf21503a30cc02fffaba08a1bd45264 SHA512 a32a1449c5f0edac1444e58f500ef1a72ffab8dad65125082eff0995cc9855b45f38b89c7f754e3d4487756a8cd3f7db1e534865b8d0384fd28246f444ed7d14 -EBUILD cln-1.3.3.ebuild 1439 BLAKE2B 6e99f79f0c010b4b695521f8813e17225f5651f82166760c126d342251687b13d767859407eab9689f541c7beec0a6854a6a6386ba4645a6cd6086227d1a79aa SHA512 ed8b4adc9bdc56a49bb79f55daa9e85ead595a8c5883f285dd36e5701239c22a2f88e7b267aff7ba4c23eebde13a4453c12844025a4dff6c512ed6ad85b37ce1 -EBUILD cln-1.3.4.ebuild 1422 BLAKE2B 83b0a014ed2dd1fe0b6d0f6474bd4a814feca2731deaa1b2b70b8c129420b76fa769581cea811bc2a5c474bdcc81fe849c955b8b4910ffb6525e3f63efc29579 SHA512 940c182c3acb23d7c206d682108ea8d9f3a733583deec183d10895d7319f83cfb49e722dbc5600302e66197c9ecb827171098795e4265010d4244c2fd7417121 EBUILD cln-1.3.6.ebuild 1215 BLAKE2B ac20e7073ee6094ab8ffc70cc8ccff9ec3d01ea3b64d3fab27aa41d3fc43bfc0fff6f762f34d74feffba78d074dcc13f6f8328ac15985c97471f88a8dc8273de SHA512 c3b4ed1486a26a9d3f42b3f515c6e32aaad4c9bbe11f1ce1890e4f4884f7e70f60de1c54fb371dc00105ece0855e6daf6c33400cce008a4bdc03503716810647 MISC metadata.xml 702 BLAKE2B 597b40fd2f7f11ef4e6ec7d0c523d2eeedb9a2cf6d2a663616dc45e891368136b38cb7760c588a7fee0880d6bcab6acace1771ad4d108ea6d52eff0abbb7e08f SHA512 4b6ddc8f558bc777963dcf271584ba59ba3d8cc3c2c95260a5680eab2a436dca894a2318f5bacdd9c9da68e6c22323d4ef2829b9bb1de0db2467f20ac204d95b diff --git a/sci-libs/cln/cln-1.3.3.ebuild b/sci-libs/cln/cln-1.3.3.ebuild deleted file mode 100644 index e7a8fa5e0ad6..000000000000 --- a/sci-libs/cln/cln-1.3.3.ebuild +++ /dev/null @@ -1,63 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit autotools-utils flag-o-matic - -DESCRIPTION="Class library (C++) for numbers" -HOMEPAGE="https://www.ginac.de/CLN/" -SRC_URI="ftp://ftpthep.physik.uni-mainz.de/pub/gnu/${P}.tar.bz2" - -LICENSE="GPL-2" -SLOT="1" -KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux" -IUSE="doc examples" - -RDEPEND="dev-libs/gmp:0=" -DEPEND="${RDEPEND} - doc? ( virtual/latex-base )" - -PATCHES=( "${FILESDIR}"/${PN}-1.3.2-arm.patch ) - -pkg_setup() { - use sparc && append-cppflags -DNO_ASM - use hppa && append-cppflags -DNO_ASM - use arm && append-cppflags -DNO_ASM -} - -src_prepare() { - # avoid building examples - # do it in Makefile.in to avoid time consuming eautoreconf - sed -i \ - -e '/^SUBDIRS.*=/s/examples doc benchmarks/doc/' \ - Makefile.in || die - autotools-utils_src_prepare -} - -src_configure() { - local myeconfargs=( --disable-static ) - autotools-utils_src_configure -} - -src_compile() { - autotools-utils_src_compile - if use doc; then - cd "${BUILD_DIR}" - export VARTEXFONTS="${T}/fonts" - emake html pdf - DOCS=("${BUILD_DIR}/doc/cln.pdf") - HTML_DOCS=("${BUILD_DIR}/doc/") - fi -} - -src_install() { - autotools-utils_src_install - if use examples; then - docompress -x /usr/share/doc/${PF}/examples - insinto /usr/share/doc/${PF}/examples - doins examples/*.cc - fi - - find "${ED}" -name '*.la' -delete || die -} diff --git a/sci-libs/cln/cln-1.3.4.ebuild b/sci-libs/cln/cln-1.3.4.ebuild deleted file mode 100644 index c57efba5bf28..000000000000 --- a/sci-libs/cln/cln-1.3.4.ebuild +++ /dev/null @@ -1,63 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit autotools-utils flag-o-matic - -DESCRIPTION="Class library (C++) for numbers" -HOMEPAGE="https://www.ginac.de/CLN/" -SRC_URI="https://www.ginac.de/CLN/${P}.tar.bz2" - -LICENSE="GPL-2" -SLOT="1" -KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux" -IUSE="doc examples" - -RDEPEND="dev-libs/gmp:0=" -DEPEND="${RDEPEND} - doc? ( virtual/latex-base )" - -PATCHES=( "${FILESDIR}"/${PN}-1.3.2-arm.patch ) - -pkg_setup() { - use sparc && append-cppflags -DNO_ASM - use hppa && append-cppflags -DNO_ASM - use arm && append-cppflags -DNO_ASM -} - -src_prepare() { - # avoid building examples - # do it in Makefile.in to avoid time consuming eautoreconf - sed -i \ - -e '/^SUBDIRS.*=/s/examples doc benchmarks/doc/' \ - Makefile.in || die - autotools-utils_src_prepare -} - -src_configure() { - local myeconfargs=( --disable-static ) - autotools-utils_src_configure -} - -src_compile() { - autotools-utils_src_compile - if use doc; then - cd "${BUILD_DIR}" - export VARTEXFONTS="${T}/fonts" - emake html pdf - DOCS=("${BUILD_DIR}/doc/cln.pdf") - HTML_DOCS=("${BUILD_DIR}/doc/") - fi -} - -src_install() { - autotools-utils_src_install - if use examples; then - docompress -x /usr/share/doc/${PF}/examples - insinto /usr/share/doc/${PF}/examples - doins examples/*.cc - fi - - find "${ED}" -name '*.la' -delete || die -} diff --git a/sci-libs/cln/files/cln-1.3.2-arm.patch b/sci-libs/cln/files/cln-1.3.2-arm.patch deleted file mode 100644 index 571bd24e68f6..000000000000 --- a/sci-libs/cln/files/cln-1.3.2-arm.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- src/base/digitseq/cl_asm_arm_.cc 2009-05-10 16:32:30.000000000 -0400 -+++ src/base/digitseq/cl_asm_arm_.cc.new 2009-12-29 09:03:02.161401990 -0500 -@@ -77,8 +77,8 @@ - #else - #define DECLARE_FUNCTION(x) - #endif --#define GLABEL(x) _##x##: --#define LABEL(x) x##: -+#define GLABEL(x) _##x: -+#define LABEL(x) x: - #define RRX rrx - #define END - diff --git a/sci-libs/coinhsl/Manifest b/sci-libs/coinhsl/Manifest index ffdceb48ffa2..f49e93f4aa12 100644 --- a/sci-libs/coinhsl/Manifest +++ b/sci-libs/coinhsl/Manifest @@ -1,5 +1,3 @@ -DIST coinhsl-2014.01.10.tar.gz 906586 BLAKE2B d58d200cd3402cdb694ff84bf4228bb548bd70e98a4aeaccad94544385fb241c68dad1ebb1c35a5549f852baa82f264864ee1db75f5a7019a252cf01ec10ba21 SHA512 fe71b07c4fc11a8a7a40a115457588b91aa4481726e523502d92d6604c5fda13cffcc4620ada64b9332cb3502f8bfbc4ee856125cd5fd987cccf49bae5d46711 DIST coinhsl-2015.06.23.tar.gz 908522 BLAKE2B ccc64a7790b1f9105439f6690e87bed52ff48306132db5fa27a036b4ce87472dfc3ca92f3e9d94aefdf737ed292568f36831eb24ac94d77f4b9bab84bc3ea36e SHA512 ad831d6ffd3c1e46481da8e58c7075adc69cb02800002c2067053fd354c5971214025982b24a9b74c681c2c3d86fd5adac78820242209feb75898165cf38753f -EBUILD coinhsl-2014.01.10.ebuild 673 BLAKE2B 9a4b286ffd8cc7529b3111d298cf538ca4eb1cd00e4f1b95b755c30078aaf4e61c754385cd706a420cb72543e71c9e9e1ad2de7792cee23935af3da12bb3104d SHA512 b3e8822b42aec6ce25a4ee245d58af417326d8fa2d9937eb30916241811aab75de8ca6ba32e4290659659698245114c55bf189f327fd11e641a5c48f75562f2f EBUILD coinhsl-2015.06.23.ebuild 583 BLAKE2B 6b1656b77221ab29f0cad17c6809522f3c7eef4a9f3f90e927dd172fb11d515c867429e572e707faf118a9a65cad1d6f630d97618e742662e6848f9a3afab01f SHA512 496d4ac65b6e2c86e70fb0ea7638fb3b77445cc3b8261a31affa9a632c0b7ebea46421cfccf6a3fee60d4ec19e91500890bb8ca7846599282757c56ad504ee7e MISC metadata.xml 581 BLAKE2B 293a87a49df189b9fccb186bf1b59c3a7e67d4ebb3933071c25c3aee520e3d7d0092ae1bbcbb08bb4ea817043b89f7320c60c6271e1dfd83a15273914f3032c8 SHA512 2af5a79721761b1421694f7bce121eb78b192f00088f9bd415e0a8bff81f829fa0c1ab0d429bf5d490ca45887098741f8c886955941d7418eb3c4db200fe8e92 diff --git a/sci-libs/coinhsl/coinhsl-2014.01.10.ebuild b/sci-libs/coinhsl/coinhsl-2014.01.10.ebuild deleted file mode 100644 index b750ae79f7ad..000000000000 --- a/sci-libs/coinhsl/coinhsl-2014.01.10.ebuild +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -AUTOTOOLS_IN_SOURCE_BUILD=yes -FORTRAN_STANDARD="77 90" - -inherit autotools-utils fortran-2 toolchain-funcs - -DESCRIPTION="HSL mathematical software library for IPOPT" -HOMEPAGE="http://www.hsl.rl.ac.uk/ipopt" -SRC_URI="${P}.tar.gz" - -LICENSE="HSL" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="static-libs" - -RDEPEND=" - sci-libs/metis - virtual/blas" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -RESTRICT="mirror fetch" - -src_configure() { - export LIBS="$($(tc-getPKG_CONFIG) --libs metis blas lapack)" - autotools-utils_src_configure - MAKEOPTS+=" -j1" -} diff --git a/sci-libs/coinor-alps/Manifest b/sci-libs/coinor-alps/Manifest index 2aff7356c3c8..a9e1a410a711 100644 --- a/sci-libs/coinor-alps/Manifest +++ b/sci-libs/coinor-alps/Manifest @@ -1,5 +1,3 @@ -DIST Alps-1.4.9.tgz 5564207 BLAKE2B a0a38b0b9da0703f2b67d20fe4fe99cfa5a31c288caf30f6581263b421963f7274bdb1251fc78db572381ad091f341c879336c60c08c254895f4f7dabe53ae97 SHA512 b8f557d33f3d02d0bf98541309934eeebebd21829fe1e2a438b07e6e17f0a1de1a970ed97b28cdaddc8b14eb1092a86db4d44838cef70bae3d091cd48fe8e2d8 DIST Alps-1.5.4.tgz 5691940 BLAKE2B 9a1d78d8957a4fd2156d35ba348f7db442bf6f6128031b9dd0d2b0c1176e5eb408208d3c90fb8563c39efbf0f4aaa9daea705f25ed711a922ab32f1e1d0b8027 SHA512 eace2f0e3dde682ee92b8e185ba6ea226a681dbcecb5fcf5258334e6deed89705b2c61821896b07323459fbd8575a31fa91c3342becbc9f6173efdf094d39555 -EBUILD coinor-alps-1.4.9.ebuild 1586 BLAKE2B f84ac01e81b081d5ae7a546f0256e227dc66b4ed2d408390dee75aafa9e1986a51d4fdb3b751a1f28deda5e2a38ece4fea07fb72b78c85e46369987a7314d485 SHA512 e10c73a2ad51c6b6afa32c1b3f0c38d915979ffb9fdc6ae8f21aaf8c96925d01318c428e6bd4d5bc5ff6db93352749e21d2027ddacea7d0e15b17f3274b117d6 EBUILD coinor-alps-1.5.4.ebuild 1448 BLAKE2B 3e078b99faf76bfd2dcacbc71b402f23e31077b4b0a9baf59efc5b5bcc59a1291b2a4c2199bb97d452478f0968a5c09392ecbe503060624c65856a565b04753d SHA512 ab8e3c40a679cdbd5ba0e1dcfd74f2ca6ab67a37d4c9f9f85af7aacd083a2013a85075b61ca8b1fc74b9bdfc1a7a76b99ea39221eee7c03db095b9a882418bd4 MISC metadata.xml 682 BLAKE2B 4333709b145e1a154188403881f2ac6f32562460edd086ad8f5f805a8cc26f4ec4aa3bf996140a2f221ed01cfb27f4545c2de3a2de1180eb8c4b95fbac7035d4 SHA512 c25cfee7ccc30ca49382c3f142cdf7aa26ab0b6bd4e9fae86e618b45ec03c13b81ebd4cb7567fae51ea64113aec47b7d8ba341722c5f41af595437a2193e1fb7 diff --git a/sci-libs/coinor-alps/coinor-alps-1.4.9.ebuild b/sci-libs/coinor-alps/coinor-alps-1.4.9.ebuild deleted file mode 100644 index 4376c5b2118d..000000000000 --- a/sci-libs/coinor-alps/coinor-alps-1.4.9.ebuild +++ /dev/null @@ -1,67 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit autotools-utils multilib - -MYPN=Alps - -DESCRIPTION="COIN-OR Framework for implementing parallel graph search algorithms" -HOMEPAGE="https://projects.coin-or.org/CHiPPS/" -SRC_URI="http://www.coin-or.org/download/source/${MYPN}/${MYPN}-${PV}.tgz" - -LICENSE="CPL-1.0" -SLOT="0/3" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples static-libs test" -RESTRICT="!test? ( test )" - -RDEPEND=" - sci-libs/coinor-utils:= - sci-libs/coinor-clp:=" -DEPEND="${RDEPEND} - virtual/pkgconfig - doc? ( app-doc/doxygen[dot] ) - test? ( sci-libs/coinor-sample sci-libs/coinor-cgl )" - -S="${WORKDIR}/${MYPN}-${PV}/${MYPN}" - -src_prepare() { - # as-needed fix - # hack to avoid eautoreconf (coinor has its own weird autotools) - sed -i \ - -e 's:\(libAlps_la_LIBADD.*=\).*:\1 @ALPSLIB_LIBS@:g' \ - src/Makefile.in || die - # bug for later versions of subversions - sed -i \ - -e 's/xexported/xexported -a "x$svn_rev_tmp" != "xUnversioned directory"/' \ - configure || die - autotools-utils_src_prepare -} - -src_configure() { - local myeconfargs=( - --enable-dependency-linking - $(use_with doc dot) - ) - PKG_CONFIG_PATH+="${ED}"/usr/$(get_libdir)/pkgconfig \ - autotools-utils_src_configure -} - -src_compile() { - autotools-utils_src_compile all $(usex doc doxydoc "") -} - -src_test() { - autotools-utils_src_test test -} - -src_install() { - use doc && HTML_DOC=("${BUILD_DIR}/doxydocs/html/.") - autotools-utils_src_install - if use examples; then - insinto /usr/share/doc/${PF} - doins -r examples - fi -} diff --git a/sci-libs/dcmtk/Manifest b/sci-libs/dcmtk/Manifest index 73b3c572c3f0..0d869d4a9370 100644 --- a/sci-libs/dcmtk/Manifest +++ b/sci-libs/dcmtk/Manifest @@ -1,10 +1,3 @@ -AUX dcmtk-3.6.3-dcmqrdb-cfg.patch 3031 BLAKE2B 9fd21949e42c7f0c479db7d9b81c133837bec4ba68554e463d253c47b451ded6e1d74aa8d545ca10220570be48021f8640eb47f63706ad517ee0ae6c6b2fa2cf SHA512 2487f88a650e299cc6a2011ba12f74bd2c305c4d8aad57034b04f99f4c0095505f6e000cada9fcafe466590719c0678735cafec0254d473c48e171c3adc91d9a -AUX dcmtk-3.6.3-fix-gcc9.patch 2620 BLAKE2B 101faae609065ab9e37a4b9edd1363562a4b86a6bca0f7e9cce5d85aeb2aca6f8e61761657ee31eaa64c8a1c3c9b8d64af950b5d7988f66c393c96a46e4c0232 SHA512 f2de58f58234ab1a7ccfb5c2dd04e3a46f71a8875f32fd1aa8d139e14527d34624686a967d087040281c5dc3a62266321384a4dc9504562f117fdcde1321bf4a -AUX dcmtk-3.6.3-nostrip.patch 7049 BLAKE2B 57d7b4d2cc3bdd683cb6c51c6d9c7e37023ddaf255655cf3f6c1473484d4e41d4a75b3bcb452a3caa06b8c751cfca47a14b0cd10372c1ebde936f7dec3046ed0 SHA512 00f28de0995c2d38b32b59298ac1c97878248647d403df86244d16a16cfd4c7ba47e7fe400592e5ac0f935a3704733a768fa3b94c9625903e86ab5f714d093bd -DIST dcmtk-3.6.3.tar.gz 6269785 BLAKE2B 8f0797840fa5ab4ffb60e46f65b16739d3ed0cb7591b20cbfba81a59de97344a663f73bed8fc7f349a99accc46fd2fde3cff021861bde6f07957a433a4db67a3 SHA512 5b907422d2d80e417ae8239e159d1300da4ed8db7e92cee619cc1d37116165e8824f8a9103605e07a95b1bffe94bbd2d5e05125f068281d241e8e78755d0b5e8 -DIST dcmtk-3.6.4.tar.gz 6402734 BLAKE2B 2d362789e7819089b7da46a9601fa5d53b8e8aab1ac7d30bf1180b3da0645d015a177c97188dc9255c6962a9d7246cf287b20824a78fbe9612b9bc277e68d294 SHA512 735f85d04410437a5163b154f43c8a299aff7a8f810605ce6c5027ae4569ff1323a69f70a2603805cec9d826a31166fd904bb53c3edc1137bfc41ba2902c2261 DIST dcmtk-3.6.5.tar.gz 6483626 BLAKE2B 6182ef207b42b16ee91e94397cc8a5b2d108435a30d4c86f0b7e39af91186604f16be07a75e176bf50575446abcab21b2f63158dc4e5f2cb6de3996a0881b295 SHA512 c0cf61b0095c5708709406bfef5e8bb82dd01dbf77df7f2af2118004920bda68218eb1e4174bf92941cdae0acdb275c886570dafd29476eee2eb815e9a82830a -EBUILD dcmtk-3.6.3.ebuild 2039 BLAKE2B 655b3b3d424ebdba0d96f629b2308d1bd5650c03ebf48e575f05a8a9c3295928aff91cf34086b1a2f19a41907ff4811394f6c4622f3fd0ba3b2501dbe5a44d2c SHA512 7b92fda743f4ad39112f440b63db6549547a0e12510b9feb2c2a04cbea1a96db49d3c4ee04a8bf4e61bf500c0a94325332a997cc1f5f2434040b1b6a59b24211 -EBUILD dcmtk-3.6.4-r1.ebuild 1931 BLAKE2B 03b414dc9a763d562598760d9adae6f0ddea24431e13dbc517197ce84e4cf4261edd702b68398040674a7e11bc48b3b21b2564993d579902e40e914c75da1149 SHA512 6cb6d226886c6b7d29366986f6ce319d45f4f96d61b8c794cddcc1867bc8aa3518474c23b8c56e51e6d81bad03fbe309fa06364213a1327063aca852e76897c4 EBUILD dcmtk-3.6.5.ebuild 1910 BLAKE2B 0411da5d5aa764098ce8793d5c04d2b5f96a499912c85bb4ad3a6a4b38b8a4f722a1e17d25709570069106a24eba84a648581e3060ecb1c6a548a9b66320bc07 SHA512 c4097e382454cc3b8477bc076d5d2d416105a17a30a30647fb0c751c0b5474eaccbd7dd58ea1536517f90a361f9c2bb6fb7a362b1b60a1483d325f54ecb15d23 MISC metadata.xml 227 BLAKE2B ed3fc2ad8c0bb2658fb120d3a54c69b5f03eb006f601b6aa8b45a48d73ab523ece0fa1efcee0ebd8fa6f134f77ff33f957dad0954d5c0fcef98e56179e24c041 SHA512 381afcd62a7b7d54c6108ee892d3609de2c183713947c7f04fad1e6c69a49866ee30265e313c72d446e4f8cab9296160f7f3d1797f9a37430fc8c4e02f50a166 diff --git a/sci-libs/dcmtk/dcmtk-3.6.3.ebuild b/sci-libs/dcmtk/dcmtk-3.6.3.ebuild deleted file mode 100644 index 4990be778c72..000000000000 --- a/sci-libs/dcmtk/dcmtk-3.6.3.ebuild +++ /dev/null @@ -1,92 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils - -DESCRIPTION="The DICOM Toolkit" -HOMEPAGE="https://dicom.offis.de/dcmtk.php.en" -SRC_URI="ftp://dicom.offis.de/pub/dicom/offis/software/${PN}/${PN}363/${P}.tar.gz" - -LICENSE="OFFIS" -KEYWORDS="~amd64 ~arm ~x86" -SLOT="0" -IUSE="doc png ssl tcpd tiff +threads xml zlib" - -RDEPEND=" - dev-libs/icu:= - virtual/jpeg:0 - png? ( media-libs/libpng:0= ) - ssl? ( dev-libs/openssl:0= ) - tcpd? ( sys-apps/tcp-wrappers ) - tiff? ( media-libs/tiff:0= ) - xml? ( dev-libs/libxml2:2= ) - zlib? ( sys-libs/zlib:0= )" -DEPEND="${RDEPEND} - media-gfx/graphviz - doc? ( app-doc/doxygen )" - -PATCHES=( - "${FILESDIR}"/${P}-dcmqrdb-cfg.patch - "${FILESDIR}"/${P}-nostrip.patch - "${FILESDIR}"/${P}-fix-gcc9.patch -) - -src_prepare() { - cmake-utils_src_prepare - - sed -e "s:share/doc/dcmtk:&-${PV}:" \ - -e "s:DIR \"/:DIR \"/usr/:" \ - -e "s:usr/etc:etc:" \ - -e "s:/lib\":/$(get_libdir)\":" \ - -e "s:COPYRIGHT::" \ - -i CMakeLists.txt || die - sed -e 's:${CMAKE_INSTALL_PREFIX}/::' \ - -i dcmwlm/data/CMakeLists.txt doxygen/CMakeLists.txt || die - # Temporary workaround: docs are not built with CMake - sed -i -e '/include/d' doxygen/Makefile.in || die - - # fix -D deprecation warnings - sed -i -e "s|_BSD_SOURCE|_DEFAULT_SOURCE|g" \ - "${S}"/config/configure.in \ - "${S}"/CMakeLists.txt || die -} - -src_configure() { - local mycmakeargs=( - -DBUILD_SHARED_LIBS=ON - -DDCMTK_WITH_ICU=ON - -DDCMTK_WITH_TIFF=$(usex tiff) - -DDCMTK_WITH_PNG=$(usex png) - -DDCMTK_WITH_XML=$(usex xml) - -DDCMTK_WITH_ZLIB=$(usex zlib) - -DDCMTK_WITH_OPENSSL=$(usex ssl) - -DDCMTK_WITH_DOXYGEN=$(usex doc) - -DDCMTK_WITH_THREADS=$(usex threads) - ) - - cmake-utils_src_configure - - if use doc; then - cd "${S}"/doxygen || die - econf - fi -} - -src_compile() { - cmake-utils_src_compile - - if use doc; then - emake -C "${S}"/doxygen - fi -} - -src_install() { - doman doxygen/manpages/man1/* - - if use doc; then - local HTML_DOCS=( "${S}"/doxygen/htmldocs/. ) - fi - cmake-utils_src_install -} diff --git a/sci-libs/dcmtk/dcmtk-3.6.4-r1.ebuild b/sci-libs/dcmtk/dcmtk-3.6.4-r1.ebuild deleted file mode 100644 index f701d3e9f5b5..000000000000 --- a/sci-libs/dcmtk/dcmtk-3.6.4-r1.ebuild +++ /dev/null @@ -1,87 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit cmake-utils - -DESCRIPTION="The DICOM Toolkit" -HOMEPAGE="https://dicom.offis.de/dcmtk.php.en" -SRC_URI="http://dicom.offis.de/download/dcmtk/release/${P}.tar.gz" - -LICENSE="OFFIS" -KEYWORDS="~amd64 ~arm ~x86" -SLOT="0" -IUSE="doc png ssl tcpd tiff +threads xml zlib" - -RDEPEND=" - dev-libs/icu:= - virtual/jpeg:0 - png? ( media-libs/libpng:* ) - ssl? ( dev-libs/openssl:0= ) - tcpd? ( sys-apps/tcp-wrappers ) - tiff? ( media-libs/tiff:0 ) - xml? ( dev-libs/libxml2:2 ) - zlib? ( sys-libs/zlib )" -DEPEND="${RDEPEND} - media-gfx/graphviz - doc? ( app-doc/doxygen )" - -src_prepare() { - cmake-utils_src_prepare - - sed -e "s:share/doc/dcmtk:&-${PV}:" \ - -e "s:DIR \"/:DIR \"/usr/:" \ - -e "s:usr/etc:etc:" \ - -e "s:/lib\":/$(get_libdir)\":" \ - -e "s:COPYRIGHT::" \ - -i CMakeLists.txt || die - sed -e 's:${CMAKE_INSTALL_PREFIX}/::' \ - -i dcmwlm/data/CMakeLists.txt doxygen/CMakeLists.txt || die - # Temporary workaround: docs are not built with CMake - sed -i -e '/include/d' doxygen/Makefile.in || die - - # fix -D deprecation warnings - sed -i -e "s|_BSD_SOURCE|_DEFAULT_SOURCE|g" \ - "${S}"/config/configure.in \ - "${S}"/CMakeLists.txt || die -} - -src_configure() { - local mycmakeargs=( - -DBUILD_SHARED_LIBS=ON - -DCMAKE_INSTALL_SYSCONFDIR=/etc - -DDCMTK_WITH_ICU=ON - -DDCMTK_WITH_TIFF=$(usex tiff) - -DDCMTK_WITH_PNG=$(usex png) - -DDCMTK_WITH_XML=$(usex xml) - -DDCMTK_WITH_ZLIB=$(usex zlib) - -DDCMTK_WITH_OPENSSL=$(usex ssl) - -DDCMTK_WITH_DOXYGEN=$(usex doc) - -DDCMTK_WITH_THREADS=$(usex threads) - ) - - cmake-utils_src_configure - - if use doc; then - cd "${S}"/doxygen || die - econf - fi -} - -src_compile() { - cmake-utils_src_compile - - if use doc; then - emake -C "${S}"/doxygen - fi -} - -src_install() { - doman doxygen/manpages/man1/* - - if use doc; then - local HTML_DOCS=( "${S}"/doxygen/htmldocs/. ) - fi - cmake-utils_src_install -} diff --git a/sci-libs/dcmtk/files/dcmtk-3.6.3-dcmqrdb-cfg.patch b/sci-libs/dcmtk/files/dcmtk-3.6.3-dcmqrdb-cfg.patch deleted file mode 100644 index 4ccb58d4e34d..000000000000 --- a/sci-libs/dcmtk/files/dcmtk-3.6.3-dcmqrdb-cfg.patch +++ /dev/null @@ -1,87 +0,0 @@ -Author: Jürgen Salk <jsa@debian.org> -Description: The original maintainer Jürgen Salk applied - a set of patches to the original code. This file contains - changes to C++ code - -Index: dcmtk-3.6.0/dcmqrdb/etc/dcmqrscp.cfg -=================================================================== ---- a/dcmqrdb/etc/dcmqrscp.cfg 2010-09-09 19:20:25.000000000 +0200 -+++ b/dcmqrdb/etc/dcmqrscp.cfg 2011-01-28 09:49:02.000000000 +0100 -@@ -10,7 +10,9 @@ - NetworkTCPPort = 104 - MaxPDUSize = 16384 - MaxAssociations = 16 -+UserName = "dcmtk" -+GroupName = "dcmtk" - - # - # Default settings for specific character set behavior: - # SpecificCharacterSet = fallback -@@ -28,12 +30,13 @@ - # NOTE: in the current implementation you cannot substitute an IP address - # for a hostname. - # --acme1 = (ACME1, acmehost1, 5678) --acme2 = (ACME2, acmehost2, 5678) --acmeCTcompany = acme1, acme2 --united1 = (UNITED1, unitedhost1, 104) --united2 = (UNITED2, unitedhost2, 104) --unitedMRcompany = united1, united2 -+# Example: -+#acme1 = (ACME1, acmehost1, 5678) -+#acme2 = (ACME2, acmehost2, 5678) -+#acmeCTcompany = acme1, acme2 -+#united1 = (UNITED1, unitedhost1, 104) -+#united2 = (UNITED2, unitedhost2, 104) -+#unitedMRcompany = united1, united2 - # - HostTable END - -@@ -51,8 +54,9 @@ - # VendorName = SymbolicName - # The symbolic name should be defined in the HostTable. - # --"Acme CT Company" = acmeCTcompany --"United MR Company" = unitedMRcompany -+# Example: -+#"Acme CT Company" = acmeCTcompany -+#"United MR Company" = unitedMRcompany - # - VendorTable END - -@@ -70,8 +74,13 @@ - # Entry in HostTable | - # ANY - # --COMMON /home/dicom/db/COMMON R (200, 1024mb) ANY --ACME_STORE /home/dicom/db/ACME_STORE RW (9, 1024mb) acmeCTcompany --UNITED_STORE /home/dicom/db/UNITED_STORE RW (9, 1024mb) unitedMRcompany -+# Example: -+# -+#ACME_STORE /var/lib/dcmtk/db/ACME_STORE RW (9, 1024mb) acmeCTcompany -+#UNITED_STORE /var/lib/dcmtk/db/UNITED_STORE RW (9, 1024mb) unitedMRcompany -+# -+# Uncomment and adjust the following lines for a common r/rw storage area: -+#READWRITE /var/lib/dcmtk/db/READWRITE RW (10, 1024mb) ANY -+#READ /var/lib/dcmtk/db/READ R (200, 1024mb) ANY - # - AETable END -Index: dcmtk-3.6.0/dcmqrdb/docs/dcmqrcnf.txt ---- a/dcmqrdb/docs/dcmqrcnf.txt 2010-09-09 19:20:12.000000000 +0200 -+++ b/dcmqrdb/docs/dcmqrcnf.txt 2011-01-28 09:46:02.000000000 +0100 -@@ -44,8 +44,8 @@ - MaxPDUSize = 8192 - MaxAssociations = 20 - SpecificCharacterSet = fallback --UserName = (do not change user) --GroupName = (do not change group) -+UserName = "dcmtk" -+GroupName = "dcmtk" - - Available options for specific character sets are: - -Index: dcmtk-3.6.0/dcmwlm/wlistdb/OFFIS/lockfile ---- /dev/null 1970-01-01 00:00:00.000000000 +0000 -+++ dcmtk-3.6.0/dcmwlm/wlistdb/OFFIS/lockfile 2011-01-28 09:46:02.000000000 +0100 -@@ -0,0 +1 @@ -+ diff --git a/sci-libs/dcmtk/files/dcmtk-3.6.3-fix-gcc9.patch b/sci-libs/dcmtk/files/dcmtk-3.6.3-fix-gcc9.patch deleted file mode 100644 index 596a1ae21b95..000000000000 --- a/sci-libs/dcmtk/files/dcmtk-3.6.3-fix-gcc9.patch +++ /dev/null @@ -1,29 +0,0 @@ -https://bugs.gentoo.org/686592 - -In file included from /var/tmp/portage/sci-libs/dcmtk-3.6.3/work/dcmtk-3.6.3/ofstd/include/dcmtk/ofstd/variadic/variant.h:19, - from /var/tmp/portage/sci-libs/dcmtk-3.6.3/work/dcmtk-3.6.3/ofstd/include/dcmtk/ofstd/ofvriant.h:379, - from /var/tmp/portage/sci-libs/dcmtk-3.6.3/work/dcmtk-3.6.3/ofstd/tests/tvariant.cc:26: -/var/tmp/portage/sci-libs/dcmtk-3.6.3/work/dcmtk-3.6.3/ofstd/include/dcmtk/ofstd/variadic/helpers.h:57:32: error: narrowing conversion of ‘-1’ from ‘int’ to ‘long unsigned int’ [-Wnarrowing] - 57 | : OFintegral_constant<size_t,-1> {}; - | - ---- a/ofstd/include/dcmtk/ofstd/variadic/helpers.h -+++ b/ofstd/include/dcmtk/ofstd/variadic/helpers.h -@@ -14,6 +14,8 @@ - #ifndef VARIADIC_HELPERS_H - #define VARIADIC_HELPERS_H - -+#include <limits> -+ - #include "dcmtk/config/osconfig.h" /* make sure OS specific configuration is included first */ - - #include "dcmtk/ofstd/oftraits.h" -@@ -54,7 +56,7 @@ - - template<size_t Index,typename T> - struct OFvariadic_find_type_t<Index,T> --: OFintegral_constant<size_t,-1> {}; -+: OFintegral_constant<size_t,std::numeric_limits<size_t>::max()> {}; - - template<typename T,typename T0=OFvariadic_nil,typename T1=OFvariadic_nil,typename T2=OFvariadic_nil,typename T3=OFvariadic_nil,typename T4=OFvariadic_nil,typename T5=OFvariadic_nil,typename T6=OFvariadic_nil,typename T7=OFvariadic_nil,typename T8=OFvariadic_nil,typename T9=OFvariadic_nil,typename T10=OFvariadic_nil,typename T11=OFvariadic_nil,typename T12=OFvariadic_nil,typename T13=OFvariadic_nil,typename T14=OFvariadic_nil,typename T15=OFvariadic_nil,typename T16=OFvariadic_nil,typename T17=OFvariadic_nil,typename T18=OFvariadic_nil,typename T19=OFvariadic_nil,typename T20=OFvariadic_nil,typename T21=OFvariadic_nil,typename T22=OFvariadic_nil,typename T23=OFvariadic_nil,typename T24=OFvariadic_nil,typename T25=OFvariadic_nil,typename T26=OFvariadic_nil,typename T27=OFvariadic_nil,typename T28=OFvariadic_nil,typename T29=OFvariadic_nil,typename T30=OFvariadic_nil,typename T31=OFvariadic_nil,typename T32=OFvariadic_nil,typename T33=OFvariadic_nil,typename T34=OFvariadic_nil,typename T35=OFvariadic_nil,typename T36=OFvariadic_nil,typename T37=OFvariadic_nil,typename T38=OFvariadic_nil,typename T39=OFvariadic_nil,typename T40=OFvariadic_nil,typename T41=OFvariadic_nil,typename T42=OFvariadic_nil,typename T43=OFvariadic_nil,typename T44=OFvariadic_nil,typename T45=OFvariadic_nil,typename T46=OFvariadic_nil,typename T47=OFvariadic_nil,typename T48=OFvariadic_nil,typename T49=OFvariadic_nil> - struct OFvariadic_find_type diff --git a/sci-libs/dcmtk/files/dcmtk-3.6.3-nostrip.patch b/sci-libs/dcmtk/files/dcmtk-3.6.3-nostrip.patch deleted file mode 100644 index 83bd3a62fd90..000000000000 --- a/sci-libs/dcmtk/files/dcmtk-3.6.3-nostrip.patch +++ /dev/null @@ -1,171 +0,0 @@ -Remove all hardcoded calls to `strip` command - -Index: dcmtk-3.6.0/config/templates/Makefile.src -=================================================================== ---- a/config/templates/Makefile.src 2009-01-30 10:27:58.000000000 +0100 -+++ b/config/templates/Makefile.src 2011-01-28 09:53:28.000000000 +0100 -@@ -31,7 +31,7 @@ - install-bin: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmdata/apps/Makefile.in -=================================================================== ---- a/dcmdata/apps/Makefile.in 2009-11-04 10:58:05.000000000 +0100 -+++ b/dcmdata/apps/Makefile.in 2011-01-28 09:53:45.000000000 +0100 -@@ -76,7 +76,7 @@ - install-bin: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmimage/apps/Makefile.in -=================================================================== ---- a/dcmimage/apps/Makefile.in 2009-10-13 16:08:33.000000000 +0200 -+++ b/dcmimage/apps/Makefile.in 2011-01-28 09:53:59.000000000 +0100 -@@ -42,7 +42,7 @@ - install: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmimgle/apps/Makefile.in -=================================================================== ---- a/dcmimgle/apps/Makefile.in 2009-10-28 10:53:39.000000000 +0100 -+++ b/dcmimgle/apps/Makefile.in 2011-01-28 09:54:11.000000000 +0100 -@@ -39,7 +39,7 @@ - install: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmjpeg/apps/Makefile.in -=================================================================== ---- a/dcmjpeg/apps/Makefile.in 2009-10-07 14:44:33.000000000 +0200 -+++ b/dcmjpeg/apps/Makefile.in 2011-01-28 09:54:28.000000000 +0100 -@@ -72,7 +72,7 @@ - install: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - clean: -Index: dcmtk-3.6.0/dcmnet/apps/Makefile.in -=================================================================== ---- a/dcmnet/apps/Makefile.in 2009-11-04 11:24:29.000000000 +0100 -+++ b/dcmnet/apps/Makefile.in 2011-01-28 09:54:50.000000000 +0100 -@@ -52,7 +52,7 @@ - install: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmpstat/apps/Makefile.in -=================================================================== ---- a/dcmpstat/apps/Makefile.in 2009-10-13 16:57:49.000000000 +0200 -+++ b/dcmpstat/apps/Makefile.in 2011-01-28 09:55:10.000000000 +0100 -@@ -113,7 +113,7 @@ - install: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmqrdb/apps/Makefile.in -=================================================================== ---- a/dcmqrdb/apps/Makefile.in 2009-11-04 11:24:30.000000000 +0100 -+++ b/dcmqrdb/apps/Makefile.in 2011-01-28 09:55:24.000000000 +0100 -@@ -57,7 +57,7 @@ - install: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmsign/apps/Makefile.in -=================================================================== ---- a/dcmsign/apps/Makefile.in 2009-09-04 17:42:31.000000000 +0200 -+++ b/dcmsign/apps/Makefile.in 2011-01-28 09:55:35.000000000 +0100 -@@ -33,7 +33,7 @@ - install: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmsr/apps/Makefile.in -=================================================================== ---- a/dcmsr/apps/Makefile.in 2009-10-13 16:57:49.000000000 +0200 -+++ b/dcmsr/apps/Makefile.in 2011-01-28 09:55:48.000000000 +0100 -@@ -44,7 +44,7 @@ - install-bin: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmwlm/apps/Makefile.in -=================================================================== ---- a/dcmwlm/apps/Makefile.in 2009-11-04 11:24:30.000000000 +0100 -+++ b/dcmwlm/apps/Makefile.in 2011-01-28 09:55:58.000000000 +0100 -@@ -49,7 +49,7 @@ - install: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmwlm/wwwapps/Makefile.in -=================================================================== ---- a/dcmrt/apps/Makefile.in 2009-11-04 11:24:30.000000000 +0100 -+++ b/dcmrt/apps/Makefile.in 2011-01-28 09:56:33.000000000 +0100 -@@ -55,7 +55,7 @@ - install-bin: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - -Index: dcmtk-3.6.0/dcmjpls/apps/Makefile.in -=================================================================== ---- a/dcmjpls/apps/Makefile.in 2011-01-28 09:56:54.000000000 +0100 -+++ b/dcmjpls/apps/Makefile.in 2011-01-28 09:57:00.000000000 +0100 -@@ -71,7 +71,7 @@ - install: all - $(configdir)/mkinstalldirs $(DESTDIR)$(bindir) - for prog in $(progs); do \ -- $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir) && $(STRIP) $(DESTDIR)$(bindir)/$$prog$(BINEXT) ;\ -+ $(INSTALL_PROGRAM) $$prog$(BINEXT) $(DESTDIR)$(bindir);\ - done - - diff --git a/sci-libs/dealii/Manifest b/sci-libs/dealii/Manifest index 0546aadc2197..7767593105ae 100644 --- a/sci-libs/dealii/Manifest +++ b/sci-libs/dealii/Manifest @@ -1,9 +1,6 @@ AUX dealii-9.1.1-no-ld-flags.patch 1044 BLAKE2B fed995fbd5563bfee6b4dd232d5d9aaecd8f0d206f06679b5d79022420c83ac2752414417499ac9181c25ddc594e492bf8d6b6af19fdfd1f047e7e089193de5d SHA512 15346b31f4ac5df3b1a3a3dcb215d4bd49e3e67480c86d4c78dbd5d27ae33f6cfa8b03fdc561e38090a2c22ae8ba71d13cd9b1bbdda3eedefd498f5cedfd0a09 -DIST dealii-9.1.1-offline_documentation.tar.gz 211103151 BLAKE2B ef7cf48aa8019a2d42a38804744ff72cc7f744255fa27df852f8f93c86a02f2125458e0e525e57510bb98adc27aed933fefa27d556d8203c991dae9866c7d57a SHA512 5e2b71e9bdeb80875772356e2c873bc1f065f2a8c5c47923b74b471d464e4867c257e3a47b32341aa60af98e74e3ed2eceba8dedb4b157ab872681576ecbd5db -DIST dealii-9.1.1.tar.gz 19911088 BLAKE2B e8488833f11339ccffd4791b9b46ab77f1982cbbdeb11fab7f6b74ca2e17c3d648a2940f4462d0ac9c68bd619b3c4f43b4d8052d2903cbb9cae2fece93d81987 SHA512 02dd91e2b0f395960f900f4cbe00bd307a4762ffbc5f3838dcc34828937e96727efbbcc66fc3d357d6b00b0dddcbc6cd7709c4c03f067d92a8f72d4631b88bf1 DIST dealii-9.2.0-offline_documentation.tar.gz 277987911 BLAKE2B d14e15bc252f481707b04e9ca3fd05b5469035537a099466a8272fa1d56833c99d845871534df75bbb2efb29063e738700a5a2815b653cdd14b49b3a93add368 SHA512 9680731b4d837561c3682a65391b442cfb8d2a947b0e4e37cad1df83877b371997d084eac52e2bf34b190ea54996d41ddd89bee79fff24d710199417f3f345ab DIST dealii-9.2.0.tar.gz 24688964 BLAKE2B 60a8ede72a49cb2e658b3d6d53fb332a96f44a7fb9bb499ba54175138d49f38a9b75d9bea2eaddcaa3f50d97ce53961692b35f89578f535d32301680e6f1d68b SHA512 7c76435e45c9c302c4f95f588229f5a9b81f0450bd029729553c706a25dfd16f5c02c50fd2618d7e285d18927b63426110d2c6a074242b91cf789bd4bc77acc5 -EBUILD dealii-9.1.1.ebuild 5120 BLAKE2B a23cb065059ca83bb13bdb67e86ccf6c6ac19d66fd0e201901d1ca7b45861f2d059c8b6f56d5e47458d5d1dabe2afac4e3bbf618c82698cd5187c6b01a28fd75 SHA512 fa2ccf93315f87bd534433ad4a3aaf2b2af0a7ed918c16a293ab8a16b55e058c233c5dd432572a31d127ea0b2c7fba0f25569aa55c87597d37b47ebc856a4726 EBUILD dealii-9.2.0.ebuild 5236 BLAKE2B 4b5c4e35542818ea2cffd3f93c769540c1e59ebfb01475f56981b1b85146370557036d88abd55cc7be0c05bc487e92a9c575c1334aa1dab0b3f2b1ac6422a7f7 SHA512 815402db6879d98116f56c6ab819b1c10cac5510c8123d19157023919825fdac578bfc5259cffc2876b2126fb14d3f70b3f5b7816c8a55dae82dcae22519810f EBUILD dealii-9999.ebuild 5016 BLAKE2B 0b6b046276f67c5a74830d923bab1b47920ce23f897e583525e1d1e5ed5f7d58f687697d9c045af0951d57e8d71400403d69ffa747f2c4a4d441506668b4b087 SHA512 ea5f868b952b686360c7fc7c987a6e41f9c80781e8519ceba1fba59565ccbdea95d6852ca3694f4671fc2aee9ecfc2f4ed7016d687d005c7de71e08a25bfb3fb MISC metadata.xml 2636 BLAKE2B 8874dd9c20a2dbd781f4a157b3639b1d66faf1b3f32dc6ac1c42fea274c0035b9632108117472b62d9161fab705f5a365aeaaaa44f555a5c2658ebd0a0fff045 SHA512 149082068c7287346a42b901501eddeea6feaaf9cc91c46681f63e63c68dd2a7e3161c3520417a44dc7eec7e673c76c6e967b5b46e898714ce65c4ea4924d25d diff --git a/sci-libs/dealii/dealii-9.1.1.ebuild b/sci-libs/dealii/dealii-9.1.1.ebuild deleted file mode 100644 index 40009692cefe..000000000000 --- a/sci-libs/dealii/dealii-9.1.1.ebuild +++ /dev/null @@ -1,155 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit cmake-utils eutils multilib - -# deal.II uses its own FindLAPACK.cmake file that calls into the system -# FindLAPACK.cmake module and does additional internal setup. Do not remove -# any of these modules: -CMAKE_REMOVE_MODULES_LIST="" - -DESCRIPTION="Solving partial differential equations with the finite element method" -HOMEPAGE="https://www.dealii.org/" - -if [[ ${PV} = *9999* ]]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/dealii/dealii.git" - SRC_URI="" - KEYWORDS="" -else - SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}.tar.gz - doc? ( https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}-offline_documentation.tar.gz )" - KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -fi - -LICENSE="LGPL-2.1+" -SLOT="0" -IUSE=" - adolc assimp arpack cpu_flags_x86_avx cpu_flags_x86_avx512f - cpu_flags_x86_sse2 cuda +debug doc +examples gmsh +gsl hdf5 +lapack - metis mpi muparser nanoflann opencascade netcdf p4est petsc scalapack - slepc +sparse static-libs sundials symengine +tbb trilinos -" - -# TODO: add slepc use flag once slepc is packaged for gentoo-science -REQUIRED_USE=" - p4est? ( mpi ) - slepc? ( petsc ) - trilinos? ( mpi )" - -RDEPEND="dev-libs/boost - app-arch/bzip2 - sys-libs/zlib - adolc? ( sci-libs/adolc ) - arpack? ( sci-libs/arpack[mpi=] ) - assimp? ( media-libs/assimp ) - cuda? ( dev-util/nvidia-cuda-sdk ) - gmsh? ( sci-libs/gmsh ) - gsl? ( sci-libs/gsl ) - hdf5? ( sci-libs/hdf5[mpi=] ) - lapack? ( virtual/lapack ) - metis? ( >=sci-libs/parmetis-4 ) - mpi? ( virtual/mpi ) - muparser? ( dev-cpp/muParser ) - nanoflann? ( sci-libs/nanoflann ) - netcdf? ( sci-libs/netcdf-cxx:0 ) - opencascade? ( sci-libs/opencascade:* ) - p4est? ( sci-libs/p4est[mpi] ) - petsc? ( sci-mathematics/petsc[mpi=] ) - scalapack? ( sci-libs/scalapack ) - slepc? ( sci-mathematics/slepc[mpi=] ) - sparse? ( sci-libs/umfpack ) - sundials? ( <sci-libs/sundials-4:= ) - symengine? ( >=sci-libs/symengine-0.4:= ) - tbb? ( dev-cpp/tbb ) - trilinos? ( sci-libs/trilinos )" - -DEPEND="${RDEPEND} - virtual/pkgconfig - doc? ( app-doc/doxygen[dot] dev-lang/perl )" - -PATCHES=( - "${FILESDIR}"/${PN}-9.1.1-no-ld-flags.patch -) - -src_configure() { - # deal.II needs a custom build type: - local CMAKE_BUILD_TYPE=$(usex debug DebugRelease Release) - - local mycmakeargs=( - -DDEAL_II_PACKAGE_VERSION="${PV}" - -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF - -DDEAL_II_ALLOW_AUTODETECTION=OFF - -DDEAL_II_ALLOW_BUNDLED=OFF - -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF - -DDEAL_II_COMPILE_EXAMPLES=OFF - -DDEAL_II_DOCHTML_RELDIR="share/doc/${P}/html" - -DDEAL_II_DOCREADME_RELDIR="share/doc/${P}" - -DDEAL_II_COMPILE_EXAMPLES=OFF - -DDEAL_II_EXAMPLES_RELDIR="share/doc/${P}/examples" - -DDEAL_II_LIBRARY_RELDIR="$(get_libdir)" - -DDEAL_II_SHARE_RELDIR="share/${PN}" - -DDEAL_II_WITH_ZLIB=ON - -DDEAL_II_WITH_ADOLC="$(usex adolc)" - -DDEAL_II_WITH_ASSIMP="$(usex assimp)" - -DDEAL_II_WITH_ARPACK="$(usex arpack)" - -DDEAL_II_WITH_CUDA="$(usex cuda)" - -DDEAL_II_COMPONENT_DOCUMENTATION="$(usex doc)" - -DDEAL_II_COMPONENT_EXAMPLES="$(usex examples)" - -DDEAL_II_WITH_GMSH="$(usex gmsh)" - -DDEAL_II_WITH_GSL="$(usex gsl)" - -DDEAL_II_WITH_HDF5="$(usex hdf5)" - -DDEAL_II_WITH_LAPACK="$(usex lapack)" - -DDEAL_II_WITH_METIS="$(usex metis)" - -DDEAL_II_WITH_MPI="$(usex mpi)" - -DDEAL_II_WITH_MUPARSER="$(usex muparser)" - -DDEAL_II_WITH_NANOFLANN="$(usex nanoflann)" - -DDEAL_II_WITH_NETCDF="$(usex netcdf)" - -DDEAL_II_WITH_OPENCASCADE="$(usex opencascade)" - -DDEAL_II_WITH_P4EST="$(usex p4est)" - -DDEAL_II_WITH_PETSC="$(usex petsc)" - -DDEAL_II_WITH_SCALAPACK="$(usex scalapack)" - -DDEAL_II_WITH_SLEPC="$(usex slepc)" - -DDEAL_II_WITH_SUNDIALS="$(usex sundials)" - -DDEAL_II_WITH_SYMENGINE="$(usex symengine)" - -DDEAL_II_WITH_UMFPACK="$(usex sparse)" - -DBUILD_SHARED_LIBS="$(usex !static-libs)" - -DDEAL_II_PREFER_STATIC_LIBS="$(usex static-libs)" - -DDEAL_II_WITH_THREADS="$(usex tbb)" - -DDEAL_II_WITH_TRILINOS="$(usex trilinos)" - ) - - # Do a little dance for purely cosmetic "QA" reasons. - use opencascade && mycmakeargs+=( -DOPENCASCADE_DIR="${CASROOT}" ) - - # Do a little dance for purely cosmetic "QA" reasons. The build system - # does query for the highest instruction set first and skips the other - # variables if a "higher" variant is set - if use cpu_flags_x86_avx512f; then - mycmakeargs+=( -DDEAL_II_HAVE_AVX512=yes ) - elif use cpu_flags_x86_avx; then - mycmakeargs+=( -DDEAL_II_HAVE_AVX=yes ) - elif use cpu_flags_x86_avx; then - mycmakeargs+=( -DDEAL_II_HAVE_SSE2=yes ) - fi - - cmake-utils_src_configure -} - -src_install() { - if use doc && [[ ${PV} != *9999* ]]; then - # copy missing images to the build directory: - cp -r "${WORKDIR}"/doc/doxygen/deal.II/images \ - "${BUILD_DIR}"/doc/doxygen/deal.II || die - # replace links: - sed -i \ - 's#"http://www.dealii.org/images/steps/developer/\(step-.*\)"#"images/\1"#g' \ - "${BUILD_DIR}"/doc/doxygen/deal.II/step_*.html || die "sed failed" - fi - cmake-utils_src_install - - # decompress the installed example sources: - use examples && docompress -x /usr/share/doc/${PF}/examples -} diff --git a/sci-libs/eccodes/Manifest b/sci-libs/eccodes/Manifest index 2ab0e802ba73..25973b9bdcba 100644 --- a/sci-libs/eccodes/Manifest +++ b/sci-libs/eccodes/Manifest @@ -1,4 +1,5 @@ -DIST eccodes-2.16.0-Source.tar.gz 11258869 BLAKE2B 4a1b3e953fc041beed47046c6ea4f74bb18230019b71c884f1dc5a102a7bae2b9083f51b74fc4078c493d188433f08db833a571e7deadd93b6c137f975f03006 SHA512 6e8768824152d8782c1457cfe79daed32114d1b4694d2843bd02a8aa63c42ccc435b53f7db6942239b3e56999fbaaba4ecef345d39fc5c5f7a5d20ceecf4422a +DIST eccodes-2.18.0-Source.tar.gz 11525701 BLAKE2B 9dc2861472309c0483e4e7eb7b79c2eb2eb72b1e99f8656bb0355630e8012468d9d6513fb3bab7b3fbc7b2c02c3c74d291a6a8862aa8434cdcce82868f359961 SHA512 8daf7f2e1aed055ca6402881f5473e4ae90ba24cc779005f57f99adc7468da459c7539e64f455e2122dd83df29992fd7a6dad2700c8331c4083226e091fbb629 DIST eccodes_test_data.tar.gz 139711871 BLAKE2B f2e89207835c78fa198f0a2fba8ac2cd4ab263c9160e02005a3ca851bc71586010e7f4742cbb9240463abb9421db83b7dadc83fe798f37321a553ca9856f68d7 SHA512 24c24ec9e01d230cf542abe5c131f05b8e627dd9d170c666628bb5fd8f7b1a6aa11a35456b8d742c59f54c6aabac78658efd68b0c50779d466aba3d35b4a0231 -EBUILD eccodes-2.16.0.ebuild 2137 BLAKE2B ad6ad425ae29c385577828a3819865a8b1aa276273a061a05692cdbbb0b63c646084d1fd67522c8871cd6bd50189742b0fd6e8c2fa9682ffec3d6efd697a4c1f SHA512 214551e5bdd1159a9d0beb95a77913e5c1e6bd65cb75253fba618e4dbb4b3592368f080c61bd67547b484c5e47e4c0b3e0da2f46efc593ed2b0b85f9df3e65ae +DIST mercator.grib2 6339 BLAKE2B b63a72c711c28fa81568d123758f61804d73886c1f8dc27ab444daf3d1a0d104ef40b1469e9940413b5311c1cdcfa5de76a9d46ea0c57d08ccfd44ab41b8d4fb SHA512 e3d4e93833345675558b58c2e6f2b5a583c52083718da05cae72dd015d2e7699ee83c2dcce695143ee5e4423c890ef80f2448146d93e87fbfff8845f6efa8178 +EBUILD eccodes-2.18.0.ebuild 2625 BLAKE2B 74828ae62c59b5cfefb1f4a1514f2b99e9ae3b58e2371d83e8e53e28361db830dc9fd2d36baab37c7dc63a82c10d49d5a8821f118d3508fa7cfe1a074eb67fd1 SHA512 505f0ca3f65a3c2c42e5cbf7d04dc72e72e6af7637699ee8149c75f1f6f603ad4c50e95a44999ac18db24fcdceb870edce93a30eccf7585c4d32e605f4e3680b MISC metadata.xml 662 BLAKE2B bc436a549b8fdcc428e9a77978b4acd557739e065768aecb084c9ac12aa5ac7d181d0a2b2268e9056beee4ceed358145b8d43f62cede5c994b9a17f8151c8ee2 SHA512 50900717dac24e76414607b55f7965fd9944668bfcb33035f66a68a3802c894b0783befff2008858e006138f1eabca1ee8e6d71691f5e202856e494afb77080c diff --git a/sci-libs/eccodes/eccodes-2.16.0.ebuild b/sci-libs/eccodes/eccodes-2.18.0.ebuild index e7b28f72d27a..62965ad9e82e 100644 --- a/sci-libs/eccodes/eccodes-2.16.0.ebuild +++ b/sci-libs/eccodes/eccodes-2.18.0.ebuild @@ -1,26 +1,33 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python{3_6,3_7} ) +PYTHON_COMPAT=( python3_{6..9} ) -inherit cmake-utils fortran-2 python-any-r1 +inherit cmake fortran-2 python-any-r1 MY_P="${P}-Source" DESCRIPTION="A set of encoding/decoding APIs and tools for WMO GRIB, BUFR, and GTS messages" HOMEPAGE="https://confluence.ecmwf.int/display/ECC" SRC_URI="https://confluence.ecmwf.int/download/attachments/45757960/${MY_P}.tar.gz - extra-test? ( http://download.ecmwf.org/test-data/eccodes/${PN}_test_data.tar.gz )" + extra-test? ( http://download.ecmwf.org/test-data/eccodes/${PN}_test_data.tar.gz + http://download.ecmwf.org/test-data/eccodes/data/mercator.grib2 )" LICENSE="Apache-2.0" SLOT="0" KEYWORDS="~amd64 ~arm ~x86" -IUSE="defs examples extra-test -fortran memfs netcdf jpeg2k png python szip test threads" -RESTRICT="!test? ( test )" -REQUIRED_USE="threads? ( !fortran ) test? ( defs !memfs ) extra-test? ( test ) !test? ( memfs? ( python ) )" +IUSE="+defs examples extra-test fortran memfs netcdf jpeg2k openmp png python szip test threads" + +REQUIRED_USE=" + fortran? ( !threads ( openmp ) ) + openmp? ( !threads ( fortran ) ) + threads? ( !fortran !openmp ) + test? ( defs !memfs ) + extra-test? ( test ) + !test? ( memfs? ( python ) )" RDEPEND=" sys-libs/zlib @@ -34,6 +41,8 @@ DEPEND="${RDEPEND} BDEPEND="virtual/pkgconfig" +RESTRICT="!test? ( test )" + S="${WORKDIR}/${MY_P}" CMAKE_BUILD_TYPE=RelWithDebInfo @@ -45,24 +54,29 @@ pkg_setup() { src_configure() { local mycmakeargs=( + -DCMAKE_INSTALL_PREFIX="${EPREFIX}/usr" + -DINSTALL_LIB_DIR="$(get_libdir)" + -DCMAKE_SKIP_INSTALL_RPATH=TRUE -DENABLE_ECCODES_THREADS=$(usex threads TRUE FALSE) + -DENABLE_ECCODES_OMP_THREADS=$(usex openmp TRUE FALSE) -DENABLE_EXAMPLES=OFF # no need to build examples -DENABLE_INSTALL_ECCODES_DEFINITIONS=$(usex defs TRUE FALSE) -DENABLE_FORTRAN=$(usex fortran TRUE FALSE) -DENABLE_PYTHON=OFF # py2 support is deprecated -DENABLE_NETCDF=$(usex netcdf TRUE FALSE) -DENABLE_JPG=$(usex jpeg2k TRUE FALSE) + -DENABLE_JPG_LIBOPENJPEG=$(usex jpeg2k TRUE FALSE) -DENABLE_PNG=$(usex png TRUE FALSE) -DENABLE_MEMFS=$(usex memfs TRUE FALSE) -DENABLE_EXTRA_TESTS=$(usex extra-test TRUE FALSE) -DBUILD_SHARED_LIBS=ON - -DINSTALL_LIB_DIR="${EPREFIX}/usr/$(get_libdir)" ) - cmake-utils_src_configure + use fortran && mycmakeargs+=( -DCMAKE_Fortran_FLAGS="-fallow-argument-mismatch" ) + cmake_src_configure } src_install() { - cmake-utils_src_install + cmake_src_install if use examples; then insinto "/usr/share/${PN}/examples" @@ -73,7 +87,11 @@ src_install() { } src_test() { - use extra-test && cp -r "${WORKDIR}"/data/* "${BUILD_DIR}"/data/ + if use extra-test; then + touch "${WORKDIR}"/data/.downloaded + cp -r "${WORKDIR}"/data/* "${BUILD_DIR}"/data/ + cp "${DISTDIR}"/mercator.grib2 "${BUILD_DIR}"/data/ + fi - cmake-utils_src_test + cmake_src_test } diff --git a/sci-libs/fplll/Manifest b/sci-libs/fplll/Manifest index cf64d253a571..40124fa571c8 100644 --- a/sci-libs/fplll/Manifest +++ b/sci-libs/fplll/Manifest @@ -1,9 +1,5 @@ DIST fplll-5.3.2.tar.gz 1284989 BLAKE2B 66d022c1a6acb3f029c871bebf4925ec5f9447af71829c6d52f2065155bf75f075965a41918722d095546ca18e8e87a85f181a76f5e42abd20c8de8165210bab SHA512 eacd990c468b1d919e1d6cc04f99656d982d5a3807970e0a1dd910a2703eb5b8eff913bc5c0e45790a547bb7aa71189fb9022024186bb84ee04d8602c9980ac2 -DIST fplll-5.3.3.tar.gz 1289510 BLAKE2B 116af9013a9c030301f2a37fae9c4865244c93de8d7a06e6f605387c4e421f9e0735c456291cb1e44d6da3c82dbea3a8f91709eea3f69a4aab1fee876f534aff SHA512 f69b98c9befe9f2ce15fdcb1b4c1bf83a7267f606770228e05416e13930d1ecb745824b1793ccc11ab13ddb0140c1daa6cfade50f2e79f93dee296880d98bef4 DIST fplll-5.4.0.tar.gz 2612340 BLAKE2B 723230856461ac6418dad00e82fc7505dbbb7bfbbf68fa7f4f3240402d62f3e1ded3049c436a0f6aad9f020727d10acb3fe15dfb8b8a907f5b3c7b191e55e9a9 SHA512 a583aac73e4618ba240c28d3e8485cef6b9c184c11b33799404e96ab99502023073ed1c6fc0d3fbc4e6737415e9ea1a273f3f1e59ccba69d1546f56903567ebe -DIST libfplll-4.0.4.tar.gz 413519 BLAKE2B afeea5a813d3d5b1b7fe3e81d5a8e9bce66ee4f8a3d265dacaa0ba7ff2f632f0f533182027322e2fd17645f5bc5816b266b167da0e36a00a38f73e794e22a522 SHA512 81cf61118f0dadca8fd82cc58df2fb5f0dc3ddd15a9b5de95a7777e0ece77d8f6a6d50d14ba7fdd6be6697cf375fac2e60792c94cc65f5a181c427dea84d552d -EBUILD fplll-4.0.4.ebuild 704 BLAKE2B e658442fb5582e62ebd499cf7b3dddd13e5b25ae4c60b161c82661a5d5a3eda79507aaee612e4dc47d571ed839be9e50a3882f3347b350e1b39d91db603839ca SHA512 7d384773c284569c2d5a6fc4a1cc5f163ec3471f09db7949d941518a08247f2539f853c9d1ecac410523ac167e25dc554c9f0770939aa45300e75e65561d3d3b EBUILD fplll-5.3.2.ebuild 684 BLAKE2B dbb2bf6a338bd9b4f357aafab6737001155249d0a28fc398f37c696f4e3a1a2497b221a5426c7f252a36b9f57c26e0bab65ca134fa405407f6697aa8f17949a1 SHA512 ebd3087376ccd1be88f351be6edb6e0eaa3beeefc3a4774208133173c67ae58490c967fbe5e19349026135a1292b4711a193cec70b5ecace1f1470010d72ae87 -EBUILD fplll-5.3.3.ebuild 686 BLAKE2B 0d64f9ea109773b2a30183b36782c5a1de018fdf951991f57efe5af75d55db14a071746f9dda3d2bcf1a57cd0b7a575ed31458579b3e0e857c943dc2a031dc66 SHA512 b38e8689fbf82b9d75648ab3e3448848b448d35be34e4284e38705d69e0ea28bc43367e278281b30aeeb339f7408f3d83e6790eff7adbc53e0bebd70cab2080a EBUILD fplll-5.4.0.ebuild 658 BLAKE2B 3adfb8f5caca78eebcae8a1cfd4ee869e25cbe2b6dbb73836e96e2153a4a31b509a8642cb701b23f19a3ecf639a3e05028bb1e7179d767ca308fbdd58ac4be7a SHA512 2da04dd45844b9dee25a9a8ae9738ca7eecfff065ae190de532ed0087e16ec84d3a9337672d09657a32befa16883f9158e4f6af6efdc7b3a1f1068509f27c988 MISC metadata.xml 827 BLAKE2B efa2adff8c660810748cc82bb6ad63b49e67e9d1e670669667ba158c0006c9aaf2c978c116202cd25a009329911d72287e3054c4f7bdb3fa99d5aa01ade40d15 SHA512 90d6bc79cd4f01c8e0196b461142c0b2af2bde8eb2d937391f07c3ec1aba3fdfbcbb0968b7e1db2d1c62d9a3f9768b20e160e382d00e1de17a939481b2b5f8fa diff --git a/sci-libs/fplll/fplll-4.0.4.ebuild b/sci-libs/fplll/fplll-4.0.4.ebuild deleted file mode 100644 index a2ed80e8e145..000000000000 --- a/sci-libs/fplll/fplll-4.0.4.ebuild +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils ltprune - -DESCRIPTION="Different implementations of the floating-point LLL reduction algorithm" -HOMEPAGE="http://perso.ens-lyon.fr/damien.stehle/index.html#software" -SRC_URI="http://perso.ens-lyon.fr/damien.stehle/fplll/lib${P}.tar.gz" - -LICENSE="LGPL-2+" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="static-libs" - -DEPEND=">=dev-libs/gmp-4.2.0:0 - >=dev-libs/mpfr-2.3.0:0" -RDEPEND="${DEPEND}" - -S=${WORKDIR}/lib${P} - -src_configure() { - econf \ - $(use_enable static-libs static) -} - -src_install() { - DOCS="AUTHORS ChangeLog NEWS README" default - dohtml README.html - prune_libtool_files -} diff --git a/sci-libs/fplll/fplll-5.3.3.ebuild b/sci-libs/fplll/fplll-5.3.3.ebuild deleted file mode 100644 index 2757d1e1f4a1..000000000000 --- a/sci-libs/fplll/fplll-5.3.3.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Implementations of the floating-point LLL reduction algorithm" -HOMEPAGE="https://github.com/fplll/fplll" -SRC_URI="https://github.com/${PN}/${PN}/releases/download/${PV}/${P}.tar.gz" - -LICENSE="LGPL-2.1+" -SLOT="0/6" -KEYWORDS="~amd64 ~x86" -IUSE="static-libs" - -BDEPEND="" -DEPEND="dev-libs/gmp:0 - dev-libs/mpfr:0" -RDEPEND="${DEPEND}" - -src_configure() { - # Support for --with-qd is problematic at the moment. - # https://github.com/fplll/fplll/issues/405 - econf $(use_enable static-libs static) -} - -src_install() { - default - find "${ED}" -name '*.la' -delete || die -} diff --git a/sci-libs/gdal/Manifest b/sci-libs/gdal/Manifest index 46bf58aa53a5..3bff9bddad59 100644 --- a/sci-libs/gdal/Manifest +++ b/sci-libs/gdal/Manifest @@ -5,6 +5,8 @@ AUX gdal-3.0.2-datadir.patch 2516 BLAKE2B 5d67889e468cee04f780e9f15cb167d27dbf95 AUX gdal-3.0.4-poppler-20.08.patch 1857 BLAKE2B 676b951dae6a374e2897549ff604fb8e7d49bae5aa1d5b51f808a6e9098f951eacc5d5ce736ab2346da2fb2d8c1c12592d8011d1f1d379321a5bc535f7b876b4 SHA512 a1e3d63885cceee3dc56febcbd8837818e956207b9fe9da3409b19d972ee338a0c22b7ad8694f742a94fdf5c26597099a5cfaf8d5212f641b32174bbdd31fd8c DIST gdal-3.0.4.tar.gz 14379480 BLAKE2B 1ced7f791608be2ea1aede8705826135a015a3bf376af087b10e0b17a6884c141df4b24654eeac136afd959c1360ce0cf1f1312438093ca305fa38a242d7e364 SHA512 bc5032a123a2cc90145fef8b467a4c9b78ddf7b4d850ceaae8350aacc3f6f23e13dd52219844a2b930b59d000854d3f2cce117643d62ead176b71939f4760ce9 DIST gdal-3.2.0.tar.gz 18928960 BLAKE2B b6cd2f2700cc26c8dd585667cd7b2e3bd9b78d294b3fa397edc1f4fa326d29dfc29e9646c6f655bcb88f7fa4c80662008fe78ba8460d9fb974fc6ae5dc310061 SHA512 695f32856effc1811931f8722dc1105d78f305ce582a6ba33bf4e1848657a57ad658f3d904c0af48e2c47e48d5d84afbe2c46a3774df43d58b1827fce9bd368f +DIST gdal-3.2.1.tar.gz 18953600 BLAKE2B b47994849bcf6bc2b2f53daabb85ef99cdc9ce2a06134bc591652bf7e5304d503701d2b07cae520ca71ad6238dd0b073d2034743e59b072fc5eb50c13bc143e6 SHA512 152dd97464a8242ea1da7a3a215b1d3326bab5aa4b0884fcab6880da460577c80075f87ea7b9513d796e899e98b40701c0b6a63f1e5275607905480ec547e688 EBUILD gdal-3.0.4-r1.ebuild 7349 BLAKE2B 967510394a5966dcd5d719780a83d0da190f8b7469bf0d2feacdcdf10eaf9f36afa0aeb9586b752f8a067d8e913320175542da127d76dea317e44ded26ad536c SHA512 81f2d403e0d49bae992f3a339d250f7852603d0783855eff5005b2cc076f93365bc3926bcf6601cda1ee8a2bc0e3a258fcf53c1eb7cd82aff56304e579b002d3 EBUILD gdal-3.2.0-r1.ebuild 7202 BLAKE2B 72093958ce36f1f01620f6cf2fd755913afa2c6bfb0d115949a845c0037fdbfb9944caf955ea482a3db46646d087738a64424dafcfa4e2578259e43f6fbb42eb SHA512 dd3404075b4313a7ba30982cabbe9cd9befcabb7aaf9c80bdc36f95a62aeafa7e16fa894b3e0edf86231362ab695ac8e30a85c2a20487ffee8b001903a886cec +EBUILD gdal-3.2.1.ebuild 7190 BLAKE2B 78962fe355ee2965f95f28663669831973c93e144e8e6392f6ecbb0adef6e976e06787ed9419eb4f205d506f0f866f287deaf2fcd1f9982ef470ff973cb1dfa0 SHA512 eb73c317649963ae52e593da6ab966c75d88815584c153a4c662f79b75806c65ab8dc8ed5df1f31d5dc9c195bfae28070382fbe54d274c493de6e94cc951d534 MISC metadata.xml 1420 BLAKE2B 1887e48a94b0d8596913fda0e102c0e23768e1fe9df32f8f0387c5966d9e9b1e0bdd6d06f6d281660494c871d887ed20d4254f1aaa9b23cda9830f7a4810ef00 SHA512 be3a0fdc46e1b022fce052908ce7f43399f1be9d4f4b1cf23e3cca8e43d6280d1f8f820fe1d0ac1d65d2dacde1ddc859c1ce3b8d067e0f6114ab3900abc419eb diff --git a/sci-libs/gdal/gdal-3.2.1.ebuild b/sci-libs/gdal/gdal-3.2.1.ebuild new file mode 100644 index 000000000000..0f3a91326581 --- /dev/null +++ b/sci-libs/gdal/gdal-3.2.1.ebuild @@ -0,0 +1,299 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +GENTOO_DEPEND_ON_PERL="no" +PYTHON_COMPAT=( python3_{7,8,9} ) +DISTUTILS_OPTIONAL=1 +inherit autotools bash-completion-r1 distutils-r1 flag-o-matic java-pkg-opt-2 perl-module toolchain-funcs + +DESCRIPTION="Translator library for raster geospatial data formats (includes OGR support)" +HOMEPAGE="https://gdal.org/" +SRC_URI="https://download.osgeo.org/${PN}/${PV}/${P}.tar.gz" + +SLOT="0/3.2" +LICENSE="BSD Info-ZIP MIT" +KEYWORDS="~amd64 ~arm ~arm64 ~ia64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos" +IUSE="armadillo +aux-xml curl debug doc fits geos gif gml hdf5 java jpeg jpeg2k lzma mdb mysql netcdf odbc ogdi opencl oracle pdf perl png postgres python spatialite sqlite threads webp xls zstd" + +REQUIRED_USE=" + mdb? ( java ) + python? ( ${PYTHON_REQUIRED_USE} ) + spatialite? ( sqlite ) +" + +BDEPEND=" + virtual/pkgconfig + doc? ( app-doc/doxygen ) + java? ( + dev-java/ant-core + dev-lang/swig:0 + >=virtual/jdk-1.7:* + ) + perl? ( dev-lang/swig:0 ) + python? ( + dev-lang/swig:0 + dev-python/setuptools[${PYTHON_USEDEP}] + ) +" +DEPEND=" + dev-libs/expat + dev-libs/json-c:= + dev-libs/libpcre + dev-libs/libxml2:2 + media-libs/tiff + >=sci-libs/libgeotiff-1.5.1-r1:= + >=sci-libs/proj-6.0.0:= + sys-libs/zlib[minizip(+)] + armadillo? ( sci-libs/armadillo:=[lapack] ) + curl? ( net-misc/curl ) + fits? ( sci-libs/cfitsio:= ) + geos? ( >=sci-libs/geos-3.8.0 ) + gif? ( media-libs/giflib:= ) + gml? ( >=dev-libs/xerces-c-3.1 ) + hdf5? ( >=sci-libs/hdf5-1.6.4:=[szip] ) + jpeg? ( virtual/jpeg:0= ) + jpeg2k? ( media-libs/openjpeg:2= ) + lzma? ( || ( + app-arch/xz-utils + app-arch/lzma + ) ) + mdb? ( dev-java/jackcess:1 ) + mysql? ( virtual/mysql ) + netcdf? ( sci-libs/netcdf:= ) + odbc? ( dev-db/unixODBC ) + ogdi? ( sci-libs/ogdi ) + opencl? ( virtual/opencl ) + oracle? ( dev-db/oracle-instantclient:= ) + pdf? ( app-text/poppler:= ) + perl? ( dev-lang/perl:= ) + png? ( media-libs/libpng:0= ) + postgres? ( >=dev-db/postgresql-8.4:= ) + python? ( + ${PYTHON_DEPS} + dev-python/numpy[${PYTHON_USEDEP}] + ) + spatialite? ( dev-db/spatialite ) + sqlite? ( dev-db/sqlite:3 ) + webp? ( media-libs/libwebp:= ) + xls? ( dev-libs/freexl ) + zstd? ( app-arch/zstd:= ) +" +RDEPEND="${DEPEND} + java? ( >=virtual/jre-1.7:* ) +" + +PATCHES=( + "${FILESDIR}/${PN}-2.2.3-soname.patch" + "${FILESDIR}/${PN}-2.3.0-curl.patch" # bug 659840 +) + +src_prepare() { + default + + sed -e "s: /usr/: \"${EPREFIX}\"/usr/:g" \ + -i configure.ac || die + + sed -e 's:^ar:$(AR):g' \ + -i ogr/ogrsf_frmts/sdts/install-libs.sh || die + + # SWIG: Use of the include path to find the input file is deprecated and will not work with ccache. + sed -e "s: gdal_array.i: ../include/gdal_array.i:" \ + -i swig/python/GNUmakefile || die "sed python makefile failed" + + eautoreconf +} + +src_configure() { + local myconf=( + # charls - not packaged in Gentoo ebuild repository + # kakadu, mrsid jp2mrsid - another jpeg2k stuff, ignore + # bsb - legal issues + # ingres - same story as oracle oci + # jasper - disabled because unmaintained and vulnerable; openjpeg will be used as JPEG-2000 provider instead + # podofo - we use poppler instead they are exclusive for each other + # tiff is a hard dep + --includedir="${EPREFIX}"/usr/include/${PN} + --disable-lto + --disable-static + --disable-driver-bsb + --disable-driver-mrf + --disable-pdf-plugin + --enable-shared + --enable-driver-grib + --with-bash-completion="$(get_bashcompdir)" + --with-cpp14 + --with-cryptopp=no + --with-expat + --with-geotiff + --with-gnm + --with-hide-internal-symbols + --with-libjson-c="${EPREFIX}"/usr/ + --with-libtiff + --with-libtool + --with-libz="${EPREFIX}"/usr/ + --without-charls + --without-dods-root + --without-ecw + --without-epsilon + --without-fgdb + --without-fme + --without-gta + --without-grass + --without-hdf4 + --without-idb + --without-ingres + --without-jasper + --without-jp2lura + --without-jp2mrsid + --without-kakadu + --without-kea + --without-libkml + --without-mongocxx + --without-mrsid + --without-mrsid_lidar + --without-msg + --without-rasdaman + --without-rasterlite2 + --without-pcraster + --without-pdfium + --without-perl + --without-podofo + --without-python + --without-qhull + --without-sfcgal + --without-sosi + --without-teigha + $(use_enable debug) + $(use_with armadillo) + $(use_with aux-xml pam) + $(use_with curl) + $(use_with fits cfitsio) + $(use_with geos) + $(use_with gif) + $(use_with gml xerces) + $(use_with hdf5) + $(use_with jpeg pcidsk) # pcidsk is internal, because there is no such library released developer by gdal + $(use_with jpeg) + $(use_with jpeg2k openjpeg) + $(use_with lzma liblzma) + $(use_with mysql mysql "${EPREFIX}"/usr/bin/mysql_config) + $(use_with netcdf) + $(use_with oracle oci) + $(use_with odbc) + $(use_with ogdi ogdi "${EPREFIX}"/usr) + $(use_with opencl) + $(use_with pdf poppler) + $(use_with png) + $(use_with postgres pg) + $(use_with spatialite) + $(use_with sqlite sqlite3 "${EPREFIX}"/usr) + $(use_with threads) + $(use_with webp) + $(use_with xls freexl) + $(use_with zstd) + ) + + tc-export AR RANLIB + + if use java; then + myconf+=( + --with-java=$(java-config --jdk-home 2>/dev/null) + --with-jvm-lib=dlopen + $(use_with mdb) + ) + else + myconf+=( --without-java --without-mdb ) + fi + + if use sqlite; then + append-libs -lsqlite3 + fi + + # bug #632660 + if use ogdi; then + append-cflags $($(tc-getPKG_CONFIG) --cflags libtirpc) + append-cxxflags $($(tc-getPKG_CONFIG) --cflags libtirpc) + fi + + ECONF_SOURCE="${S}" econf "${myconf[@]}" + + # mysql-config puts this in (and boy is it a PITA to get it out) + if use mysql; then + sed -e "s: -rdynamic : :" \ + -i GDALmake.opt || die "sed LIBS failed" + fi +} + +src_compile() { + if use perl; then + rm "${S}"/swig/perl/*_wrap.cpp || die + emake -C "${S}"/swig/perl generate + fi + + # gdal-config needed before generating Python bindings + default + + if use java; then + pushd "${S}"/swig/java > /dev/null || die + emake + popd > /dev/null || die + fi + + if use perl; then + pushd "${S}"/swig/perl > /dev/null || die + perl-module_src_configure + perl-module_src_compile + popd > /dev/null || die + fi + + if use python; then + rm -f "${S}"/swig/python/*_wrap.cpp || die + emake -C "${S}"/swig/python generate + pushd "${S}"/swig/python > /dev/null || die + distutils-r1_src_compile + popd > /dev/null || die + fi + + use doc && emake docs +} + +src_install() { + local DOCS=( NEWS ) + use doc && local HTML_DOCS=( html/. ) + + default + + use java && java-pkg_dojar "${S}"/swig/java/gdal.jar + + if use perl; then + pushd "${S}"/swig/perl > /dev/null || die + myinst=( DESTDIR="${D}" ) + perl-module_src_install + popd > /dev/null || die + perl_delete_localpod + fi + + if use python; then + # Don't clash with gdal's docs + unset DOCS HTML_DOCS + + pushd "${S}"/swig/python > /dev/null || die + distutils-r1_src_install + popd > /dev/null || die + + newdoc swig/python/README.rst README-python.rst + + insinto /usr/share/${PN}/samples + doins -r swig/python/samples/. + fi + + doman "${S}"/man/man*/* + find "${ED}" -name '*.la' -type f -delete || die +} + +pkg_postinst() { + elog "Check available image and data formats after building with" + elog "gdalinfo and ogrinfo (using the --formats switch)." +} diff --git a/sci-libs/gsl/Manifest b/sci-libs/gsl/Manifest index 85845490bf05..ae3191eb5e35 100644 --- a/sci-libs/gsl/Manifest +++ b/sci-libs/gsl/Manifest @@ -3,10 +3,7 @@ AUX eselect.cblas.gsl 216 BLAKE2B d1f8be34cac7b83d88f69a3fd382fc68c96a04fc39b1e2 DIST gsl-1.16-cblas.patch.bz2 2810 BLAKE2B 364c9f93a386e5d95c86789a3c00231cdfbe588fe4371ae85447bc6574b7798721a8559fda747ee656de96e7d8c5657901db86dc9c59bcee27789c918222e38f SHA512 55a2dab850697b1e378ecf64d299ed6f021f1b1eb7dbad749f5014e5b7f275ec6c981a5699a87969c4d0794677efa51a5a2317526b58ca96aabb3f6a68cabd81 DIST gsl-1.16.tar.gz 3534080 BLAKE2B 1c55a41e5ed57b57f671074240d23416aa8f23e3cc2bb832e455d4f44d307e6be6adfa3671dbbf2aa14604ea49f96ff636de7909f3532cdc811f6bd99b0aa59d SHA512 94e998953f30d701e1cd0a5e05d572c5cca7b6f40f0533aa85394ba4218946826408093ffe3049a0ab13d6ba87034fcec1a7d52a67d0b8860dc02b5fd4feb8eb DIST gsl-2.3-cblas.patch.bz2 12036 BLAKE2B ddad801cc42f925581e2e4995292f3eab0d2faf70c43c3b205fcf521b98e426df1d0824ed7d98b2c4cc89bbc4068fd45f2595dc02d23bded5c702b5a01bbfdb2 SHA512 37b867a21e60cd96c453ae24139bcf16c00c85bb6d5a3dcece81185fd9af5870c5167d2fa3c74cffce55bfb84f72be34d28ea94e0889904f8dda8687f66b4d23 -DIST gsl-2.4.tar.gz 5916715 BLAKE2B f22c07b2d5759a383e05b8bfdba70071672cc27f12ff2a8c755451fe7e10c8e2d80e3fcc601508c5e9942e4cfd05e51c43ba96666326b760e4390eb0c2552886 SHA512 12442b023dd959e8b22a9c486646b5cedec7fdba0daf2604cda365cf96d10d99aefdec2b42e59c536cc071da1525373454e5ed6f4b15293b305ca9b1dc6db130 DIST gsl-2.5.tar.gz 7303881 BLAKE2B 7c6d10c21071a1af1f03123f83244476d2e90fcd27d05a115b03a74fe631eb7d8081f5260e534ae58ab0997c1111f980a5e4cb50d110ca626fe810c44be70180 SHA512 5b4c5c023f9029ce220f4e09aa4d0234fed94d42ac224d58fda095fe0532d54237a7c33278f8b5d0ba051f6004486edb38d0adb4fcb49337a8c1d8a18cf4a24a EBUILD gsl-1.16.ebuild 3067 BLAKE2B 480c0a8b51002252c7d06ba5b58f6682ebe48bf894c2a82b663f7df6a87bf78e77d6b4290312b2ccf4f691811d9535ee027d0f4e1afd9215a05d8b6f289110f1 SHA512 0a7985caf5f0105c822662d3ba9067af1f824bdf4e7dbb489f6c595e7c2cdbfbc2adb3842fff3b53ab77d6b53bad41cba3e42528ee65ccb01d1c1846f8d045e8 -EBUILD gsl-2.4.ebuild 3173 BLAKE2B 2ee0381418b2264610040fb2b70af4858dfaaf423ca483e2d83db41d0e08c11dec50633d2b49084917eb39f85d5dd33e40e9a861a37a0263b5f863f2b3ed2518 SHA512 645b06cc08d92ac7a16e3212087d6331724f202a5582939603e976a5f24a5f680f9be9f3d9fb15486a5c7e26bbbdd40fb07582826d9b139fb02f955c8c35d4d0 EBUILD gsl-2.5-r1.ebuild 1400 BLAKE2B 80778daac6694157ddb2894cecb5fe6cd708770c26eca5f468cf5c5a9082469c2f58008d15ec37bd1739f3575f219c52de6ebdf61c0b0cc65fb5c909d057d307 SHA512 92848c84f40375a55137627a59b044d741b102fafdbaef6cf22aa43c61e982b39e03c51e58bf3fe99d5e63886d59995d1b184d978f65c1ac3c9b23db46658766 -EBUILD gsl-2.5.ebuild 3164 BLAKE2B c9606b6fb6a75bbcd4f9a00286f7ab71e1cf7414e25d0603536a0fe5b8c822ad9be496384a563bc61cc56ffc1ae5624076122eb8e9ff898f84d71799e1ff7a02 SHA512 9f1b70dd657593072fd04d670c5a06a98f29fd8a53898841bddf033b71603dfa896097937649fcdc70351af445af740d27a4b4cd6a7c029bbcfbc78691cc1459 MISC metadata.xml 1190 BLAKE2B b9015dc09464b327144a546a0e9dae6e1c5eaf3ce118a24b7ad1853f09af1952284f754aada2436d7e1a1df82638720492445d8f015ccb1cec05c78dd718fc26 SHA512 f56ec87aeb8f257480a631748db79c78193797e1ecd586dbbd78f31a01fbbd3341fa67ffd3244e5dba352478ee552184d6a1d9b5ef5d54d67b038215090eca00 diff --git a/sci-libs/gsl/gsl-2.4.ebuild b/sci-libs/gsl/gsl-2.4.ebuild deleted file mode 100644 index e061f9b29d03..000000000000 --- a/sci-libs/gsl/gsl-2.4.ebuild +++ /dev/null @@ -1,112 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit autotools eutils flag-o-matic toolchain-funcs - -DESCRIPTION="The GNU Scientific Library" -HOMEPAGE="https://www.gnu.org/software/gsl/" -SRC_URI="mirror://gnu/${PN}/${P}.tar.gz - https://dev.gentoo.org/~mgorny/dist/${PN}-2.3-cblas.patch.bz2" - -LICENSE="GPL-3" -SLOT="0/23" -KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~sparc-solaris ~x86-solaris" -IUSE="cblas-external +deprecated static-libs" - -RDEPEND="cblas-external? ( virtual/cblas:= )" -DEPEND="${RDEPEND} - app-eselect/eselect-cblas - virtual/pkgconfig" - -PATCHES=( "${WORKDIR}"/${PN}-2.3-cblas.patch ) - -pkg_pretend() { - # prevent to use external cblas from a previously installed gsl - local current_lib - if use cblas-external; then - current_lib=$(eselect cblas show | cut -d' ' -f2) - if [[ ${current_lib} == gsl ]]; then - ewarn "USE flag cblas-external is set: linking gsl with an external cblas." - ewarn "However the current selected external cblas is gsl." - ewarn "Please install and/or eselect another cblas" - die "Circular gsl dependency" - fi - fi -} - -src_prepare() { - ESELECT_PROF="gsl" - - # bug 349005 - [[ $(tc-getCC)$ == *gcc* ]] && \ - [[ $(tc-getCC)$ != *apple* ]] && \ - [[ $(gcc-major-version)$(gcc-minor-version) -eq 44 ]] \ - && filter-mfpmath sse - filter-flags -ffast-math - - default - if use deprecated; then - sed -i -e "/GSL_DISABLE_DEPRECATED/,+2d" configure.ac || die - fi - eautoreconf - - cp "${FILESDIR}"/eselect.cblas.gsl "${T}"/ || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.cblas.gsl || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.cblas.gsl || die - fi -} - -src_configure() { - if use cblas-external; then - export CBLAS_LIBS="$($(tc-getPKG_CONFIG) --libs cblas)" - export CBLAS_CFLAGS="$($(tc-getPKG_CONFIG) --cflags cblas)" - fi - econf \ - --enable-shared \ - $(use_with cblas-external) \ - $(use_enable static-libs static) -} - -src_test() { - local MAKEOPTS="${MAKEOPTS} -j1" - default -} - -src_install() { - default - - find "${ED}" -name '*.la' -exec rm -f {} + - - # take care of pkgconfig file for cblas implementation. - sed \ - -e "s/@LIBDIR@/$(get_libdir)/" \ - -e "s/@PV@/${PV}/" \ - -e "/^prefix=/s:=:=${EPREFIX}:" \ - -e "/^libdir=/s:=:=${EPREFIX}:" \ - "${FILESDIR}"/cblas.pc.in > cblas.pc \ - || die "sed cblas.pc failed" - insinto /usr/$(get_libdir)/blas/gsl - doins cblas.pc - eselect cblas add $(get_libdir) "${T}"/eselect.cblas.gsl \ - ${ESELECT_PROF} -} - -pkg_postinst() { - local p=cblas - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/gsl/gsl-2.5.ebuild b/sci-libs/gsl/gsl-2.5.ebuild deleted file mode 100644 index 65e051a9dce5..000000000000 --- a/sci-libs/gsl/gsl-2.5.ebuild +++ /dev/null @@ -1,112 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit autotools flag-o-matic toolchain-funcs - -DESCRIPTION="The GNU Scientific Library" -HOMEPAGE="https://www.gnu.org/software/gsl/" -SRC_URI="mirror://gnu/${PN}/${P}.tar.gz - https://dev.gentoo.org/~mgorny/dist/${PN}-2.3-cblas.patch.bz2" - -LICENSE="GPL-3" -SLOT="0/23" -KEYWORDS="~alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 sparc ~x86 ~amd64-linux ~x86-linux ~sparc-solaris ~x86-solaris" -IUSE="cblas-external +deprecated static-libs" - -RDEPEND="cblas-external? ( virtual/cblas:= )" -DEPEND="${RDEPEND} - app-eselect/eselect-cblas - virtual/pkgconfig" - -PATCHES=( "${WORKDIR}"/${PN}-2.3-cblas.patch ) - -pkg_pretend() { - # prevent to use external cblas from a previously installed gsl - local current_lib - if use cblas-external; then - current_lib=$(eselect cblas show | cut -d' ' -f2) - if [[ ${current_lib} == gsl ]]; then - ewarn "USE flag cblas-external is set: linking gsl with an external cblas." - ewarn "However the current selected external cblas is gsl." - ewarn "Please install and/or eselect another cblas" - die "Circular gsl dependency" - fi - fi -} - -src_prepare() { - ESELECT_PROF="gsl" - - # bug 349005 - [[ $(tc-getCC)$ == *gcc* ]] && \ - [[ $(tc-getCC)$ != *apple* ]] && \ - [[ $(gcc-major-version)$(gcc-minor-version) -eq 44 ]] \ - && filter-mfpmath sse - filter-flags -ffast-math - - default - if use deprecated; then - sed -i -e "/GSL_DISABLE_DEPRECATED/,+2d" configure.ac || die - fi - eautoreconf - - cp "${FILESDIR}"/eselect.cblas.gsl "${T}"/ || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.cblas.gsl || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.cblas.gsl || die - fi -} - -src_configure() { - if use cblas-external; then - export CBLAS_LIBS="$($(tc-getPKG_CONFIG) --libs cblas)" - export CBLAS_CFLAGS="$($(tc-getPKG_CONFIG) --cflags cblas)" - fi - econf \ - --enable-shared \ - $(use_with cblas-external) \ - $(use_enable static-libs static) -} - -src_test() { - local MAKEOPTS="${MAKEOPTS} -j1" - default -} - -src_install() { - default - - find "${ED}" -name '*.la' -exec rm -f {} + - - # take care of pkgconfig file for cblas implementation. - sed \ - -e "s/@LIBDIR@/$(get_libdir)/" \ - -e "s/@PV@/${PV}/" \ - -e "/^prefix=/s:=:=${EPREFIX}:" \ - -e "/^libdir=/s:=:=${EPREFIX}:" \ - "${FILESDIR}"/cblas.pc.in > cblas.pc \ - || die "sed cblas.pc failed" - insinto /usr/$(get_libdir)/blas/gsl - doins cblas.pc - eselect cblas add $(get_libdir) "${T}"/eselect.cblas.gsl \ - ${ESELECT_PROF} -} - -pkg_postinst() { - local p=cblas - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/hdf/Manifest b/sci-libs/hdf/Manifest index 047314d24a2f..c5f2a49289de 100644 --- a/sci-libs/hdf/Manifest +++ b/sci-libs/hdf/Manifest @@ -1,11 +1,8 @@ AUX hdf-4.2.11-enable-fortran-shared.patch 1287 BLAKE2B 4b1b7aab9a2eb958684418a01067f37b46c38ad1f8c983caace0f01b29a26d1f0c787cfb80045f228a91cb962dd997995e6e5ada1df28e6e1d0bbc70d332265c SHA512 787260127abff6695e5cddbbd75290c2349ae150c01dd1c74e83539e78d503bbcb017ea8aba8f808d846e7e291e4cb13ef69d4186ff1e38780c75e0046ca6734 -AUX hdf-4.2.11-fix-examples-dir.patch 5966 BLAKE2B 8ff35e5db544e73e85629f555d6dd7b22ae902d16c4fa2da5e9c29694196abc9fc65c591fa5898f324ad36a73cc39b2b3785ae1936ae101da3cab4a2eb6d7f5c SHA512 f33b6e2f5de26687accba8b6ff7c1d50b96f9ad40b84771ea8a361692da88d2f376331cb8a80dc662e3213d6ddc7707ca5fcbfcaf7c1ef7224a534c0a969fabb AUX hdf-4.2.11-fix-szip-detection.patch 896 BLAKE2B 6e703621ffed66b6757a500cf24cf1f428d5d130f9aebfc261e6108d19cbd7846fc2d90820c993d03fab5c7943b032afb3c8d0b2053ef1665a94f6e38403c60f SHA512 44342b4e7680a002a3dd9ae2a56dcb6689ee57824476436dc5ef5ff1884174e9de6c98972fccc88296f376a354f92e049d64c493df81da2d08ace6271cd2292a AUX hdf-4.2.13-fix-xdr-configure.patch 376 BLAKE2B 611e5b37016750ad408a0cf8d73827e4974248747c1a21206149ededbfe8cfd087c862f321e55a23b5d7187b202ac6256edee84c9dee3cad6357081a7ae86d75 SHA512 dd99f0c0a5fe858a717c1373c75c84867383511e91fb5c703353feb22410ea561f84fe03c5c7578d27817a74579516e60331f5d14a1ad3ea38ab1376e396b5c8 AUX hdf-4.2.13-linux-tirpc.patch 972 BLAKE2B a95350ef2364e3ff08aa79d12e458853bebe610cd8376f6b6a0483f0962fca1a131be1b09cf3cc1447e1fb3b2fded9567a1a3755dbf5f195b0f70ae124bed3c9 SHA512 9901bdacab3e82632637d18fd08714876a990ceb4573261cc0e1e03a5e4e422c50c460a594d46b0434c9c7b96c1bf57de1aa52bbb59e525298eeacf22e8b41b1 -DIST hdf-4.2.11.tar.bz2 3173535 BLAKE2B a35a366858cc67d6ef68959cf407c21a929d5dca82834937b648eded506c7c3f75dd67be763f0d1fc24b7be92849b53d688abb25611cbc9b918340dbb23a83e1 SHA512 b3be9a91c62fa258c8aa6f97d1ccbd8301225e43938b525a826c639fd8b30b7dd566f58f4d54e365606d861ad01660887163e5ca6521293791080e5ed41ef781 DIST hdf-4.2.13.tar.bz2 3616255 BLAKE2B 3b20f018849b64aebc0e5fa53516f65f6e181b421c3842a033c2ec5586c262f18cb0be5c2a146bdecd9ae7580963817face2a21458852756f5b7072b7e6d5899 SHA512 d7be2b3650255590b72db4a6931325ec0af256db4b846cfe886c76bf24034901b2ba7a7e546566f426d265b1793287ea3f95d8fbd818a3d018fa6813a4541657 -EBUILD hdf-4.2.11.ebuild 1639 BLAKE2B e665ee1ddd8ed979cc7c86712289b610fed0ae71064dacef3f1d476ea3affa81783b49fcfe9f15de35ff94b37c60687c542ba824ce2f9663aed81d0b4030d912 SHA512 ccfde9e848bf91258c40853dc2161c7c80b65dd3cb07ff3928e8a465de01a2e3ae6ae1160d24f2afd177a87c86f3f814a6abf31c2d029d4231e56788a3292e04 EBUILD hdf-4.2.13-r1.ebuild 1825 BLAKE2B d9a3ab5d47884442462115561ab2871ee537ec1ae8cc7f1babd4fb9773218bd41dcfbac49bd3bdf958df50e4fe2bad6e562eaad049d0062d6a6f4395bcc5bf6e SHA512 8f3b3373867dc97da0a1422de930b9b6ea709a830e69bb97a1be1c7294b48501222d6518d448a4f92254ea1c77b849da7ea1d6dbae739dee78a4065f5674bf3b EBUILD hdf-4.2.13.ebuild 1711 BLAKE2B a35ac70c77523f3bd60aedf15d4bcdf05a2d2b7d061d0ec4553a1b761566e6388f2b9d141f53bcb5bef44fb34d0cfb189031cde7bb6baca440089a251d3da6c9 SHA512 332a2a73a35a3970c18a43b1fbe139f94c8a6f0b84a37249c1a1d7b2a8fd010454bd22e64e4284d22c8fed314e5067ede2dfe25532f691a640f31ca1d4b63af9 MISC metadata.xml 859 BLAKE2B c5c33f1a444d0af6287dac495443be05de5a2b8d9c55d4bf9aeb80ebc28f1391612510771848277fa1467097ab480b9b1dc306af587d2621e4a1d16c6bdc91a5 SHA512 2a38d2fbd5672f4465cba6da9f74c6ef95068be26514acc3d2949049f8461265e2ce7c6751d1853218ac4a4b62746e355faa9f2e0d7d8d6dc2faf17d8e40fceb diff --git a/sci-libs/hdf/files/hdf-4.2.11-fix-examples-dir.patch b/sci-libs/hdf/files/hdf-4.2.11-fix-examples-dir.patch deleted file mode 100644 index f6f15545d66b..000000000000 --- a/sci-libs/hdf/files/hdf-4.2.11-fix-examples-dir.patch +++ /dev/null @@ -1,120 +0,0 @@ -diff -Nur hdf-4.2.11.orig/hdf/examples/Makefile.am hdf-4.2.11/hdf/examples/Makefile.am ---- hdf-4.2.11.orig/hdf/examples/Makefile.am 2016-03-16 20:07:45.103492925 +0000 -+++ hdf-4.2.11/hdf/examples/Makefile.am 2016-03-16 22:16:35.836304451 +0000 -@@ -46,8 +46,8 @@ - INSTALL_TOP_FILES = README - - # Where to install example files --EXAMPLEDIR=$(prefix)/examples/c --EXAMPLETOPDIR=$(prefix)/examples -+EXAMPLEDIR=$(docdir)/examples/c -+EXAMPLETOPDIR=$(docdir)/examples - - # How to build C programs using h4cc - $(EXTRA_PROG): $(H4CC) -diff -Nur hdf-4.2.11.orig/hdf/fortran/examples/Makefile.am hdf-4.2.11/hdf/fortran/examples/Makefile.am ---- hdf-4.2.11.orig/hdf/fortran/examples/Makefile.am 2016-03-16 20:07:45.103492925 +0000 -+++ hdf-4.2.11/hdf/fortran/examples/Makefile.am 2016-03-16 22:17:58.775261767 +0000 -@@ -41,7 +41,7 @@ - INSTALL_SCRIPT_FILES = run-fortran-ex.sh - - # Where to install Fortran example files --EXAMPLEDIR=$(prefix)/examples/fortran -+EXAMPLEDIR=$(docdir)/examples/fortran - - # How to build Fortran programs using h4fc - $(EXTRA_PROG): $(H4FC) -diff -Nur hdf-4.2.11.orig/mfhdf/examples/Makefile.am hdf-4.2.11/mfhdf/examples/Makefile.am ---- hdf-4.2.11.orig/mfhdf/examples/Makefile.am 2016-03-16 20:07:45.183491919 +0000 -+++ hdf-4.2.11/mfhdf/examples/Makefile.am 2016-03-16 22:18:38.304764814 +0000 -@@ -23,7 +23,7 @@ - SD_get_info.c SD_find_sds_by_name.c SD_set_get_dim_info.c \ - SD_dimscale_vs_sds.c SD_set_attr.c SD_get_attr.c SD_chunking_example.c - --EXAMPLEDIR=$(prefix)/examples/c -+EXAMPLEDIR=$(docdir)/examples/c - - # How to build programs using h4cc - $(EXTRA_PROG): $(H4CC) -diff -Nur hdf-4.2.11.orig/mfhdf/fortran/examples/Makefile.am hdf-4.2.11/mfhdf/fortran/examples/Makefile.am ---- hdf-4.2.11.orig/mfhdf/fortran/examples/Makefile.am 2016-03-16 20:07:45.183491919 +0000 -+++ hdf-4.2.11/mfhdf/fortran/examples/Makefile.am 2016-03-16 22:18:15.075056851 +0000 -@@ -24,7 +24,7 @@ - SD_set_attr.f SD_get_attr.f SD_compress_sds.f SD_chunking_example.f - - # Where to install example files --EXAMPLEDIR=$(prefix)/examples/fortran -+EXAMPLEDIR=$(docdir)/examples/fortran - - # How to build Fortran programs using h4fc - $(EXTRA_PROG): $(H4FC) -diff -up hdf-4.2.11/config/examples.am.destdir hdf-4.2.11/config/examples.am ---- hdf-4.2.11/config/examples.am.destdir 2015-02-09 09:43:05.000000000 -0700 -+++ hdf-4.2.11/config/examples.am 2015-02-13 13:24:09.008230956 -0700 -@@ -44,7 +44,7 @@ CHECK_CLEANFILES+= *.hdf - CLEANFILES=$(EXAMPLE_PROG) - - # How to create EXAMPLEDIR if it doesn't already exist --$(EXAMPLEDIR): -+$(DESTDIR)$(EXAMPLEDIR): - mkdir -p $@ - - # Install and uninstall rules. We install the source files, not the -@@ -54,42 +54,42 @@ install-data-local: - uninstall-local: - @$(MAKE) $(AM_MAKEFLAGS) uninstall-examples - --install-examples: $(EXAMPLEDIR) -+install-examples: $(DESTDIR)$(EXAMPLEDIR) - @for f in X $(INSTALL_FILES); do \ - if test $$f != X; then \ -- (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1); \ -- chmod a-x $(EXAMPLEDIR)/$$f; \ -+ (set -x; $(INSTALL) $(srcdir)/$$f $(DESTDIR)$(EXAMPLEDIR)/. || exit 1); \ -+ chmod a-x $(DESTDIR)$(EXAMPLEDIR)/$$f; \ - fi; \ - done - @for f in X $(INSTALL_SCRIPT_FILES); do \ - if test $$f != X; then \ -- (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1); \ -+ (set -x; $(INSTALL) $(srcdir)/$$f $(DESTDIR)$(EXAMPLEDIR)/. || exit 1); \ - fi; \ - done - @for f in X $(INSTALL_TOP_FILES); do \ - if test $$f != X; then \ -- (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLETOPDIR)/. || exit 1); \ -- chmod a-x $(EXAMPLETOPDIR)/$$f; \ -+ (set -x; $(INSTALL) $(srcdir)/$$f $(DESTDIR)$(EXAMPLETOPDIR)/. || exit 1); \ -+ chmod a-x $(DESTDIR)$(EXAMPLETOPDIR)/$$f; \ - fi; \ - done - @for f in X $(INSTALL_TOP_SCRIPT_FILES); do \ - if test $$f != X; then \ -- (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLETOPDIR)/. || exit 1); \ -+ (set -x; $(INSTALL) $(srcdir)/$$f $(DESTDIR)$(EXAMPLETOPDIR)/. || exit 1); \ - fi; \ - done - - uninstall-examples: -- @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ -- set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES); \ -+ @if test -n "$(INSTALL_FILES)" -a -d $(DESTDIR)$(EXAMPLEDIR); then \ -+ set -x; cd $(DESTDIR)$(EXAMPLEDIR) && $(RM) $(INSTALL_FILES); \ - fi -- @if test -n "$(INSTALL_SCRIPT_FILES)" -a -d $(EXAMPLEDIR); then \ -- set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_SCRIPT_FILES); \ -+ @if test -n "$(INSTALL_SCRIPT_FILES)" -a -d $(DESTDIR)$(EXAMPLEDIR); then \ -+ set -x; cd $(DESTDIR)$(EXAMPLEDIR) && $(RM) $(INSTALL_SCRIPT_FILES); \ - fi -- @if test -n "$(INSTALL_TOP_FILES)" -a -d $(EXAMPLETOPDIR); then \ -- set -x; cd $(EXAMPLETOPDIR) && $(RM) $(INSTALL_TOP_FILES); \ -+ @if test -n "$(INSTALL_TOP_FILES)" -a -d $(DESTDIR)$(EXAMPLETOPDIR); then \ -+ set -x; cd $$(DESTDIR)(EXAMPLETOPDIR) && $(RM) $(INSTALL_TOP_FILES); \ - fi -- @if test -n "$(INSTALL_TOP_SCRIPT_FILES)" -a -d $(EXAMPLETOPDIR); then \ -- set -x; cd $(EXAMPLETOPDIR) && $(RM) $(INSTALL_TOP_SCRIPT_FILES); \ -+ @if test -n "$(INSTALL_TOP_SCRIPT_FILES)" -a -d $(DESTDIR)$(EXAMPLETOPDIR); then \ -+ set -x; cd $(DESTDIR)$(EXAMPLETOPDIR) && $(RM) $(INSTALL_TOP_SCRIPT_FILES); \ - fi - - installcheck-local: diff --git a/sci-libs/hdf/hdf-4.2.11.ebuild b/sci-libs/hdf/hdf-4.2.11.ebuild deleted file mode 100644 index e898f4d07374..000000000000 --- a/sci-libs/hdf/hdf-4.2.11.ebuild +++ /dev/null @@ -1,66 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit fortran-2 toolchain-funcs autotools flag-o-matic ltprune - -MYP=${P/_p/-patch} - -DESCRIPTION="General purpose library and format for storing scientific data" -HOMEPAGE="https://www.hdfgroup.org/hdf4.html" -SRC_URI="https://www.hdfgroup.org/ftp/HDF/HDF_Current/src/${MYP}.tar.bz2" - -SLOT="0" -LICENSE="NCSA-HDF" -KEYWORDS="~amd64 ~ia64 ~ppc -sparc ~x86 ~amd64-linux ~x86-linux" -IUSE="examples fortran szip static-libs test" -RESTRICT="!test? ( test )" -REQUIRED_USE="test? ( szip )" - -RDEPEND=" - sys-libs/zlib - virtual/jpeg:0 - szip? ( virtual/szip )" -DEPEND="${RDEPEND} - test? ( virtual/szip )" - -S="${WORKDIR}/${MYP}" - -PATCHES=( - "${FILESDIR}"/${PN}-4.2.11-fix-szip-detection.patch - "${FILESDIR}"/${PN}-4.2.11-enable-fortran-shared.patch - "${FILESDIR}"/${PN}-4.2.11-fix-examples-dir.patch -) - -src_prepare() { - default - sed -i -e 's/-R/-L/g' config/commence.am || die #rpath - eautoreconf - [[ $(tc-getFC) = *gfortran ]] && append-fflags -fno-range-check -} - -src_configure() { - econf \ - --enable-shared \ - --enable-production=gentoo \ - --disable-netcdf \ - $(use_enable fortran) \ - $(use_enable static-libs static) \ - $(use_with szip szlib) \ - CC="$(tc-getCC)" -} - -src_install() { - default - use static-libs || prune_libtool_files --all - dodoc release_notes/{RELEASE,HISTORY,bugs_fixed,misc_docs}.txt - cd "${ED}"usr - use examples || rm -rf share/doc/${PF}/examples - mv bin/ncgen{,-hdf} || die - mv bin/ncdump{,-hdf} || die - mv share/man/man1/ncgen{,-hdf}.1 || die - mv share/man/man1/ncdump{,-hdf}.1 || die -} diff --git a/sci-libs/hypre/Manifest b/sci-libs/hypre/Manifest index 9967f0119622..3955244a48f5 100644 --- a/sci-libs/hypre/Manifest +++ b/sci-libs/hypre/Manifest @@ -1,7 +1,3 @@ -DIST hypre-2.14.0.tar.gz 7312329 BLAKE2B 93de48bdd05c383c74fb1b3b25ddcd5830be099aa7557262547932e17eba524c25ff69ff94d10f29ffdabfef9c05281fd485a7c9b999141f2488ae4fc0238736 SHA512 c7b59fb7ab1cc906e339fcc00603898e44234a65aa74600f740bc825aa94aa66ff0cbd4bd4b7f339c0d28ff5bd9494f15b57f2017a22348fee14b4e8333f1e6c -DIST hypre-2.18.0.tar.gz 5698227 BLAKE2B e6562b78dcff6592a7df86d2162e3669c9ea3f71cc8926402038da319cb6c1b801a7ac5e44612ba86762ccdd63ae30cd2976451368309622b46e67a7a7dc1d83 SHA512 41292d590285703b5fb91c767fc9d064e36911f09583a81a3da9f2b5524143b23bb1beba3449d759e3f681760d9ad155072e1762d7d6bbe0e65660d5b16c472a DIST hypre-2.18.2.tar.gz 5699792 BLAKE2B 6adb343d23594adea60a4009f589285236365a5769b1d5cb66908ce83984dd48b3be929e6c7298c7b9cb1e2d67b1fe7ea641c8a160562d223edb9809977fb684 SHA512 7b343a5c8530d7f5e31cad6c940c2f154b2b954566d4fe8525d690fec41db23936a46fb642a994791de32984e696c624804fb1fde1f0c9ce026f1a6e46b9c0f4 -EBUILD hypre-2.14.0.ebuild 2929 BLAKE2B d3e32bd55d00422686ef432e4ec4c63fe133342494f29255c71d86f98ed31a3eee6fdd66b68f32ab194420197994f11d9cc767675afe65367cd85bb7fefbddab SHA512 9024f6db0d7f7cd460a6a639915d3aa7f73d6048a0ecc70fe88b928cf445d6398a206822cade66b237e9fdbee2ad1b6e443c0870ad3fb67532c05409406f98d6 -EBUILD hypre-2.18.0.ebuild 2729 BLAKE2B b8d20ca170850be57edd77b9ccb7136bdd5c06979d47fc8b5d5bfd890df99155ac6b2bc4ff74a6536e17811faf7b611dbaf97a54231aa27d91809d9062c08c39 SHA512 c21bb95634bd5a9fb0037d5e10dbfffed32b7e93888677c4df489518be63100360773388b621d97be37a14916e13a40971dc846d10a49d082c774efed0ca3558 EBUILD hypre-2.18.2.ebuild 2751 BLAKE2B 7bbde7d8fa2035ee2304da1589f766b5e6dedf5c6859324d54ff23d8d05e740dbbaa1ca579594b98da3e4c4640890de466eddfc95a98dc383e046f12ea013637 SHA512 50f6d8c66e1c1b98ba4ca54d78e4a34f807ee6aa5cacf3e9f28cf1f355d9f777286444270eca6946daf90411bfaf92c065d7971088a178d7bec30e2c95dc9744 -MISC metadata.xml 689 BLAKE2B 81168f6d150dc65e74bbae7b73657d2ef6c5de0cfcb616b9f1dd756e9734e10823c1468cc1725f8681dfb71d529c89c958e751100aa9727dcc28e36c8f27fd2b SHA512 fb10f8f67754f103b109fa7696e66e02f6a66ff74472341f3e2dcb27957646fd4140594c9eee489c3d47f1985bf8a122b48269c6a6168ddbfcdcd0ffe2a415e2 +MISC metadata.xml 608 BLAKE2B b38da1761e74a20f40607ae258caf7e1482dfb6b0e85a770fd63d2cfb7c7a046667a0256409836859fe34900a8e4f7f1457a16aa8325c52a2c48da2db2658e88 SHA512 63208b23e52f588f7cd1931fa47cc6c9216c0b0d1ebb7d4e4d11a20e747a7f88d9be28e79e02c057c092c7b40f9d88ea91db2fbce2b4b8dbc83a38224b3e8d9e diff --git a/sci-libs/hypre/hypre-2.14.0.ebuild b/sci-libs/hypre/hypre-2.14.0.ebuild deleted file mode 100644 index a7d775a6c575..000000000000 --- a/sci-libs/hypre/hypre-2.14.0.ebuild +++ /dev/null @@ -1,107 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit cmake-utils fortran-2 toolchain-funcs flag-o-matic - -DESCRIPTION="Parallel matrix preconditioners library" -HOMEPAGE="https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods" -SRC_URI="https://github.com/LLNL/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="LGPL-2.1" -SLOT="0/${PV}" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="debug doc examples fei fortran int64 openmp mpi" - -RDEPEND=" - sci-libs/superlu:= - virtual/blas - virtual/lapack - mpi? ( virtual/mpi )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -DOCS=( CHANGELOG COPYRIGHT README ) - -# 2.11.1: fei and mli wrappers still buggy with big integers -REQUIRED_USE="int64? ( !fei )" - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] &&\ - use openmp && [[ $(tc-getCC)$ == *gcc* ]] && tc-check-openmp -} - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && \ - use openmp && [[ $(tc-getCC)$ == *gcc* ]] && ! tc-has-openmp ; then - ewarn "You are using a non capable gcc compiler ( < 4.2 ? )" - die "Need an OpenMP capable compiler" - fi -} - -src_prepare() { - default - # link with system superlu and propagate LDFLAGS - sed -e "s:@LIBS@:@LIBS@ $($(tc-getPKG_CONFIG) --libs superlu):" \ - -e 's:_SHARED@:_SHARED@ $(LDFLAGS):g' \ - -i src/config/Makefile.config.in || die - sed -e '/HYPRE_ARCH/s: = :=:g' \ - -i src/configure || die - # link with system blas and lapack - sed -e '/^BLASFILES/d' \ - -e '/^LAPACKFILES/d' \ - -i src/lib/Makefile || die -} - -src_configure() { - tc-export CC CXX - append-flags -Dhypre_dgesvd=dgesvd_ - use openmp && [[ $(tc-getCC)$ == *gcc* ]] && \ - append-flags -fopenmp && append-ldflags -fopenmp - use mpi && CC=mpicc FC=mpif77 CXX=mpicxx - - cd src - - # without-superlu: means do not use bundled one - econf \ - --enable-shared \ - --with-blas-libs="$($(tc-getPKG_CONFIG) --libs-only-l blas | sed -e 's/-l//g')" \ - --with-blas-lib-dirs="$($(tc-getPKG_CONFIG) --libs-only-L blas | sed -e 's/-L//g')" \ - --with-lapack-libs="$($(tc-getPKG_CONFIG) --libs-only-l lapack | sed -e 's/-l//g')" \ - --with-lapack-lib-dirs="$($(tc-getPKG_CONFIG) --libs-only-L lapack | sed -e 's/-L//g')" \ - --with-timing \ - --without-superlu \ - $(use_enable debug) \ - $(use_enable openmp hopscotch) \ - $(use_enable int64 bigint) \ - $(use_enable fortran) \ - $(use_with fei) \ - $(use_with fei mli) \ - $(use_with openmp) \ - $(use_with mpi MPI) -} - -src_compile() { - emake -C src -} - -src_test() { - LD_LIBRARY_PATH="${S}/src/lib:${LD_LIBRARY_PATH}" \ - PATH="${S}/src/test:${PATH}" \ - emake -C src check -} - -src_install() { - emake -C src install \ - HYPRE_INSTALL_DIR="${ED}" \ - HYPRE_LIB_INSTALL="${ED}/usr/$(get_libdir)" \ - HYPRE_INC_INSTALL="${ED}$/usr/include/hypre" - use doc && dodoc docs/*.pdf - if use examples; then - insinto /usr/share/doc/${PF} - doins -r src/examples - fi -} diff --git a/sci-libs/hypre/hypre-2.18.0.ebuild b/sci-libs/hypre/hypre-2.18.0.ebuild deleted file mode 100644 index 7f9dd4cc4b14..000000000000 --- a/sci-libs/hypre/hypre-2.18.0.ebuild +++ /dev/null @@ -1,101 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit cmake-utils fortran-2 toolchain-funcs flag-o-matic - -DESCRIPTION="Parallel matrix preconditioners library" -HOMEPAGE="https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods" -SRC_URI="https://github.com/${PN}-space/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="LGPL-2.1" -SLOT="0/${PV}" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="debug examples fortran int64 openmp mpi" - -RDEPEND=" - sci-libs/superlu:= - virtual/blas - virtual/lapack - mpi? ( virtual/mpi )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -DOCS=( CHANGELOG COPYRIGHT README ) - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] &&\ - use openmp && [[ $(tc-getCC)$ == *gcc* ]] && tc-check-openmp -} - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && \ - use openmp && [[ $(tc-getCC)$ == *gcc* ]] && ! tc-has-openmp ; then - ewarn "You are using a non capable gcc compiler ( < 4.2 ? )" - die "Need an OpenMP capable compiler" - fi -} - -src_prepare() { - default - # link with system superlu and propagate LDFLAGS - sed -e "s:@LIBS@:@LIBS@ $($(tc-getPKG_CONFIG) --libs superlu):" \ - -e 's:_SHARED@:_SHARED@ $(LDFLAGS):g' \ - -i src/config/Makefile.config.in || die - sed -e '/HYPRE_ARCH/s: = :=:g' \ - -i src/configure || die - # link with system blas and lapack - sed -e '/^BLASFILES/d' \ - -e '/^LAPACKFILES/d' \ - -i src/lib/Makefile || die -} - -src_configure() { - tc-export CC CXX - append-flags -Dhypre_dgesvd=dgesvd_ - use openmp && [[ $(tc-getCC)$ == *gcc* ]] && \ - append-flags -fopenmp && append-ldflags -fopenmp - use mpi && CC=mpicc FC=mpif77 CXX=mpicxx - - cd src - - # without-superlu: means do not use bundled one - econf \ - --enable-shared \ - --with-blas-libs="$($(tc-getPKG_CONFIG) --libs-only-l blas | sed -e 's/-l//g')" \ - --with-blas-lib-dirs="$($(tc-getPKG_CONFIG) --libs-only-L blas | sed -e 's/-L//g')" \ - --with-lapack-libs="$($(tc-getPKG_CONFIG) --libs-only-l lapack | sed -e 's/-l//g')" \ - --with-lapack-lib-dirs="$($(tc-getPKG_CONFIG) --libs-only-L lapack | sed -e 's/-L//g')" \ - --with-timing \ - --without-superlu \ - $(use_enable debug) \ - $(use_enable openmp hopscotch) \ - $(use_enable int64 bigint) \ - $(use_enable fortran) \ - $(use_with openmp) \ - $(use_with mpi MPI) -} - -src_compile() { - emake -C src -} - -src_test() { - LD_LIBRARY_PATH="${S}/src/lib:${LD_LIBRARY_PATH}" \ - PATH="${S}/src/test:${PATH}" \ - emake -C src check -} - -src_install() { - emake -C src install \ - HYPRE_INSTALL_DIR="${ED}" \ - HYPRE_LIB_INSTALL="${ED}/usr/$(get_libdir)" \ - HYPRE_INC_INSTALL="${ED}$/usr/include/hypre" - - if use examples; then - dodoc -r src/examples - fi -} diff --git a/sci-libs/hypre/metadata.xml b/sci-libs/hypre/metadata.xml index 48b9bd61f1b4..d245803317be 100644 --- a/sci-libs/hypre/metadata.xml +++ b/sci-libs/hypre/metadata.xml @@ -14,6 +14,5 @@ </upstream> <use> <flag name="int64">Build the 64 bits integer library</flag> - <flag name="fei">Build the internal Finite Element Interface routines</flag> </use> </pkgmetadata> diff --git a/sci-libs/idlmarkwardt/Manifest b/sci-libs/idlmarkwardt/Manifest index 1edb000d840e..8b1805cc2bb4 100644 --- a/sci-libs/idlmarkwardt/Manifest +++ b/sci-libs/idlmarkwardt/Manifest @@ -1,5 +1,3 @@ -DIST idlmarkwardt-20130418.tar.gz 703131 BLAKE2B 6898edaeebfadb827773bfd8653b581788fdfa45bd605a4b905f93cebe5a478b28abaace2e2494f022105370738adad3fb58f5594d3b5a901cfa26d72cf5472d SHA512 e93187ffa6c719c9b3b54bf61d5b138abd6c7cc91029b0802b9542c6699c29c3d8ee26e3afeccf10bfabecea36d588cd27031621739ab509e3dfd6c0ade7b4cc DIST idlmarkwardt-20160319.tar.gz 705496 BLAKE2B 094cf3b7c83d717ede077ede9b62aca8de23e5c680569a0853183719d324aa7ae76552c3468ba6bfa7688e08db88d3247547c537ea219fb5dc7403632bb02599 SHA512 b0eb3ee4cf4ac9450e2557f1ec53660ed6e618a4602f592d551d0a81270aba15cd4eeefb1307b415f2b6f498c192db54ca1ef5e07400260b25a2f7f4b308ecdc -EBUILD idlmarkwardt-20130418.ebuild 552 BLAKE2B d5ac2aacf7a9f77df758ba3d531b8f34d98f929cdc03ed18e2019c9f5cec0bb9e1c0bcf3b3430d36cb72955b7d1066d0a188c78c52b61128e58eb7006e8ac254 SHA512 e785c100df3dddd4751e799a17b3fa404972178198c457fd662eb1780b7b4c084911e4a0fcc08878bf05648f2aa87dc7d8c2633e1184c4c54f3e9c0ef92ade3d EBUILD idlmarkwardt-20160319.ebuild 552 BLAKE2B d5ac2aacf7a9f77df758ba3d531b8f34d98f929cdc03ed18e2019c9f5cec0bb9e1c0bcf3b3430d36cb72955b7d1066d0a188c78c52b61128e58eb7006e8ac254 SHA512 e785c100df3dddd4751e799a17b3fa404972178198c457fd662eb1780b7b4c084911e4a0fcc08878bf05648f2aa87dc7d8c2633e1184c4c54f3e9c0ef92ade3d MISC metadata.xml 601 BLAKE2B f325b02ccd96363b2ee8b2fdf19fd5f81a7fb4c69a4bd01a7a1add9bc3455fd519eb3a6bd686c59029071254d02873bef9444f8978104a1e3b083aae105a23bc SHA512 5021b98158d3a3c1fd7c335ac7506b3c7356b6206c38bffc4378aa39278e692f49fdb406d31c7afd6807be014189ce873feb1427e5a1d35d8833467bce394f14 diff --git a/sci-libs/idlmarkwardt/idlmarkwardt-20130418.ebuild b/sci-libs/idlmarkwardt/idlmarkwardt-20130418.ebuild deleted file mode 100644 index 695912942d65..000000000000 --- a/sci-libs/idlmarkwardt/idlmarkwardt-20130418.ebuild +++ /dev/null @@ -1,24 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -DESCRIPTION="Craig Markwardt IDL procedures (MPFIT, CMSVLIB, etc)" -HOMEPAGE="http://cow.physics.wisc.edu/~craigm/idl/idl.html" -SRC_URI="http://www.physics.wisc.edu/~craigm/idl/down/cmtotal.tar.gz -> ${P}.tar.gz" - -LICENSE="Markwardt" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -DEPEND="" -RDEPEND="dev-lang/gdl" - -S="${WORKDIR}" - -src_install() { - insinto /usr/share/gnudatalanguage/${PN} - doins *.pro - dodoc *README -} diff --git a/sci-libs/indilib/Manifest b/sci-libs/indilib/Manifest index 5625f329d770..07d548bdf10b 100644 --- a/sci-libs/indilib/Manifest +++ b/sci-libs/indilib/Manifest @@ -1,9 +1,7 @@ -DIST indilib-1.7.5.tar.xz 1380436 BLAKE2B 092f4100894218bf749ee0d7c910c4ee20026cf471f4f65686b67dd37a924b448b6de3733e70d7047dca6a77fd8ae26b9a568f8249336be78d052984838a2ccf SHA512 57205ed9ea9d8e8215886b17d9f0307755bca571d599967dc607320fad5ec62096f31526280f3b184ffeb0434d9adb71e65a7d6f89d29edaa643d729765f47a8 DIST indilib-1.8.3.tar.gz 2062250 BLAKE2B f46b557dfbbe16070605ad638111505577b801ac6abc2cf42df3a322eaec35a25e6f8efe3ea740b5758b3aeadd656efb4b98e284d531621ab34ca00f28e39a2e SHA512 09c23299659efea795ec430566a5b51181878c382c72f1e530ef3abe3b996b670506f6f5f1bca4eb88fbdc756854c3a36d8bd646a2cf13e397e09ace1f1af044 -DIST indilib-1.8.6.tar.gz 2166393 BLAKE2B 65998b90a66938f0fa7cf702da83c86a0a5d22cde6ebca6ec2e7ab65fb310ef3f6aa0b8ae0ede48cbcd78788741433a43907ea9d020fcf3362d012a1464d1905 SHA512 c966b92cd9d66dcafd26b5ff7b062c22d035367111496c84777dfed5b22403631107f43dcdc535036198d2e108689aa99e003e9ad047a0af687ad247df155850 DIST indilib-1.8.7.tar.gz 2195976 BLAKE2B 3c206e5775b9c16d44cf28b6fa70b186ee9c46c2e6ec639ebf39a97ba553314108481c0dd3ee29ed5297667e9691169bc4aefeee9ef290ee22b1c57967509afa SHA512 bb128ab0641f023039f32d2e3bdf9dfd5e54638bbce252e5f393fd5b2375df0311c472663e78dd498896db8f4669b21f231a095fed639710dc8cba4bb3bf2eb8 -EBUILD indilib-1.7.5.ebuild 1120 BLAKE2B 70e19ee186e7b74d01430d4fafd2fb15d3850666b519051fa2ab97612fd01180b39e5c37d697d8d2508166ad769b41422f9d4e7e7f0789c1059641d5ee77e40d SHA512 f33e4268c4837c2df6b64bb79abd11479001e9fd9abde0c5357751a014522b37d48878a8f72628e56915487c72b7805ab7c5dd01f61a21c47407a4cda8a00a27 +DIST indilib-1.8.8.tar.gz 2234987 BLAKE2B 542c77e1826002e6268be82048014cdd7db2e58d6860bf21e058775acccbca49091218c24d5910f91705aebcf592e21f9008d780f39bb0458115b073319e3949 SHA512 0598b117fa582daaaf7c71524fd40866a37fcdc47b523b2ee1ed3301701c7351b027a3aab794e2e1405aec7293ecc6705d5f7852bb472cd21f40d7e3d7733d1d EBUILD indilib-1.8.3.ebuild 1190 BLAKE2B e09d230117079e62df8baefe1933c8d70e76778a1cb34776b02c13a7635e9bec2819315aa7f22010515b5e787525fd30a8af7525369f4fa5563c251696f84639 SHA512 44395e193f3e918f45362995cae6dbc7ea24c0038a7bd4068b684d5684518be7ffbe7dd1d942b1162b4cd2ea87c6ef1754ba388381738eafb79ed00095e84f4e -EBUILD indilib-1.8.6.ebuild 1192 BLAKE2B 0b7e584d556b356999fa46d863ff115638c7941c8cc6b756b10571070d0892f19937ad5b17d72312682d24f3260b227d781c6bdaa4094e89592fb3c14bc7977a SHA512 d28075334e1b6c1410413e1b191a0f8d0410daffe3f0fd823598280d8572013ecb6d3df5728be9ecaad05432a50ca1dc13a8734aa226a6a63e561b59df5f39be EBUILD indilib-1.8.7.ebuild 1191 BLAKE2B 1047b62c8a546e70dd5fe645eebaf6f5c5615d9beed2d9d406197f731ebd13d72b1047ace29f3988d3ea097e561b1b52d718f33b33dde4ecf97c49c07ba3faf1 SHA512 388fb2ff99e874e029fa999f934459c156d821738f3d3c4327429b7604121d50a06276dc768bc0c2d1e770132cf665f35003d2923f6adb828f2e821ff2332e05 +EBUILD indilib-1.8.8.ebuild 1192 BLAKE2B 25b550018dd7ac9374e69666e69995edb133802609904ef526ece7a8d0b60645c0bd57c282a2a3cd4e48e1ff3daf164db9c9eb35cae8ec9393cd2b4e2dfa3277 SHA512 da09509560050f9f8eadcd28ee79da820cb489f2eede8f2e0343671fe7db5cbf932debbad09ee335d54432a8140f1268ed8a8d989d41154b891e7ddb4c203de8 MISC metadata.xml 460 BLAKE2B b6ebdd49fefcbbb015e5856f0ad42682b5eda153b38b3d64f949d2c41274df269f292f25d5eb3be37a7acb039bab2d3d3b7744cfe7959472fe03425b53bd4282 SHA512 ff04501f56765165645695dda25db6bff677a6f676d3fa1d005ec0bc6fae7413e0fdd87d800b321fdd7a98f1d0cc829daa5a3d4d3bff849b6e164a5768c79c84 diff --git a/sci-libs/indilib/indilib-1.7.5.ebuild b/sci-libs/indilib/indilib-1.7.5.ebuild deleted file mode 100644 index 45012f5a0a87..000000000000 --- a/sci-libs/indilib/indilib-1.7.5.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit cmake-utils udev - -DESCRIPTION="INDI Astronomical Control Protocol library" -HOMEPAGE="https://www.indilib.org/" -# SRC_URI="https://github.com/${PN}/${PN/lib/}/archive/v${PV}.tar.gz -> ${P}.tar.gz" -SRC_URI="https://dev.gentoo.org/~asturm/distfiles/${P}.tar.xz" - -LICENSE="BSD GPL-2+ LGPL-2+ LGPL-2.1+" -SLOT="0/1" -KEYWORDS="amd64 ~ppc ~ppc64 x86" -IUSE="ogg test" -RESTRICT="!test? ( test )" - -RDEPEND=" - net-misc/curl - sci-libs/cfitsio:= - sci-libs/gsl:= - sci-libs/libnova - sys-libs/zlib - virtual/jpeg:0 - virtual/libusb:0 - ogg? ( - media-libs/libogg - media-libs/libtheora - ) -" -DEPEND="${RDEPEND} - kernel_linux? ( sys-kernel/linux-headers ) - test? ( >=dev-cpp/gtest-1.8.0 ) -" - -S="${WORKDIR}/lib${PN/lib/}" - -src_test() { - BUILD_DIR="${BUILD_DIR}"/test cmake-utils_src_test -} - -src_configure() { - local mycmakeargs=( - -DINDI_BUILD_QT5_CLIENT=OFF - -DINDI_BUILD_UNITTESTS=$(usex test) - -DUDEVRULES_INSTALL_DIR="$(get_udevdir)" - $(cmake-utils_use_find_package ogg OggTheora) - ) - - cmake-utils_src_configure -} diff --git a/sci-libs/indilib/indilib-1.8.6.ebuild b/sci-libs/indilib/indilib-1.8.8.ebuild index dc1c02bc3d9b..e6ee5b9fd220 100644 --- a/sci-libs/indilib/indilib-1.8.6.ebuild +++ b/sci-libs/indilib/indilib-1.8.8.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 diff --git a/sci-libs/ipopt/Manifest b/sci-libs/ipopt/Manifest index 2c2af120ce28..5ca7c8562d45 100644 --- a/sci-libs/ipopt/Manifest +++ b/sci-libs/ipopt/Manifest @@ -1,7 +1,3 @@ -DIST Ipopt-3.11.7.tgz 4749511 BLAKE2B c344634e427a6603544e50d661cafcf6004b4192a3912453dee96cfa143ca5f290f0efc39f46e983dcba6fe5b8a0becb2fa75bd6cc6f27be5c8ea8dc05f1ec4c SHA512 a9edd33b59c9744dc4e09d709519be1fc3d014cc4f50254402784aa8035d21617323f2879c430245886f2a13165cc81d26779331dc1601f0edfc406953dca56f -DIST Ipopt-3.11.8.tgz 4749758 BLAKE2B c5ee5d3f01f1e8b4b6a1cd7606e2ad1a24c09fb0a8d8ed93fda7af61d543ac4f4579d7bb8817607d916223d9214693e1156f908cef1233a75df8759a1099b5d2 SHA512 1f60ea769dd7305348af3a5d4ed56938f04e59c36fb7a3fa0b808e4788dccee4711f82c3767e2aae87d21618d2a840d0bb22491c21c40bc2f9ebdf4b3a01aeec DIST Ipopt-3.12.12.tgz 4530034 BLAKE2B 8a8e24e4e5d8ad5bc1fcfa2de525e1e39c88a4c6dd77b51c0549249f517b3d6a1279e355a7cb606ebd8e606551031b653b78cd4d1cb51dd369e051ffa010011f SHA512 c543695feaa39a69b01e0025ebcd8a8772deb369ea1072f17da4ba34c1b522d322959067f3a6cfc40446e00c2e6dd2d6704a55623aba5d61dff44333727368cb -EBUILD ipopt-3.11.7.ebuild 2420 BLAKE2B fd7ff9ff3f9506c1311bdaecde9f7141f07f755b1e04da36cbc66f071ce1eee316c8f94c6fb555c883674d16d424baf34d402c82ca8160f29466a82ae58742e5 SHA512 9ddf2ed876eb388140b1d6922d8cbb929f1d278946e32c12eb10574f39021f95531faa63a93decb97fc1781b8e1b445c65fd316a6f27e7b8f754edffe11f8688 -EBUILD ipopt-3.11.8.ebuild 2427 BLAKE2B cdd028d5b1dddddf398cd7978f894c6441497bf3f2c4a7038379dbb3246c2e938ba15c9e310e49a27b47b3c2716d5c2b2a5f11c01e1a67bcb7b17e714d0055d3 SHA512 3fbda42914236a556272ab83054b01971f76fcfde7d2ec5051d4b3c02d8a2bce5903a7799dde070e550974c5946d1cb2063a935f493c86ed1d30a93719e05bb9 EBUILD ipopt-3.12.12.ebuild 2080 BLAKE2B 2c3fa37450613d141645906d21c5776064bb6bd6a862014000f99862c7bad432387f43b25dce44667e71ec19fbe0d52a9995ce86c374222510b55bc8c69bbf48 SHA512 52656a3149d8f7582cdd5157faea9c034fc27d436abb5b5de7859361310daebe461c560c9efab87a9cef9abca36247e0db322a828d482c3a63cf822d16f683d3 MISC metadata.xml 842 BLAKE2B 62d2240cf8ca06d45d88c1563473f40bb3e7a9127c76f0bc8fa40b4e3eeddc92387d4112b4e59e03e06757375e8cee6f209ceb72c85bc9903b239e429ce8717f SHA512 6e18c52fa233ba8c19d3493ceda613b39e310fc32976f289a5f1c9709dac860a0e482390ad601019ea1d9818e5e3499887974466803d8c5800e96e9b0d6c0a72 diff --git a/sci-libs/ipopt/ipopt-3.11.7.ebuild b/sci-libs/ipopt/ipopt-3.11.7.ebuild deleted file mode 100644 index c0838cc7dedc..000000000000 --- a/sci-libs/ipopt/ipopt-3.11.7.ebuild +++ /dev/null @@ -1,97 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -AUTOTOOLS_IN_SOURCE_BUILD=yes -FORTRAN_NEEDED="mumps" -inherit eutils autotools-utils multilib toolchain-funcs fortran-2 - -MYPN=Ipopt -MYP=${MYPN}-${PV} - -DESCRIPTION="Interior-Point Optimizer for large-scale nonlinear optimization" -HOMEPAGE="https://projects.coin-or.org/Ipopt/" -SRC_URI="http://www.coin-or.org/download/source/${MYPN}/${MYP}.tgz" - -LICENSE="EPL-1.0 hsl? ( HSL )" -SLOT="0/1" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples hsl lapack mpi mumps static-libs test" -RESTRICT="!test? ( test )" - -RDEPEND=" - virtual/blas - hsl? ( sci-libs/coinhsl ) - lapack? ( virtual/lapack ) - mumps? ( sci-libs/mumps[mpi=] )" -DEPEND="${RDEPEND} - virtual/pkgconfig - doc? ( app-doc/doxygen[dot] ) - test? ( sci-libs/coinor-sample sci-libs/mumps )" - -S="${WORKDIR}/${MYPN}-${PV}/${MYPN}" - -src_prepare() { - if use mumps && ! use mpi; then - ln -s "${EPREFIX}"/usr/include/mpiseq/mpi.h \ - src/Algorithm/LinearSolvers/ - elif use mpi; then - export CXX=mpicxx FC=mpif77 F77=mpif77 CC=mpicc - fi - sed -i \ - -e "s:lib/pkgconfig:$(get_libdir)/pkgconfig:g" \ - configure || die - autotools-utils_src_prepare -} - -src_configure() { - # needed for the --with-coin-instdir - dodir /usr - local myeconfargs=( - --enable-dependency-linking - --with-blas-lib="$($(tc-getPKG_CONFIG) --libs blas)" - --with-coin-instdir="${ED}"/usr - $(use_with doc dot) - ) - - if use lapack; then - myeconfargs+=( --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" ) - else - myeconfargs+=( --without-lapack ) - fi - if use mumps; then - myeconfargs+=( - --with-mumps-incdir="${EPREFIX}"/usr/include - --with-mumps-lib="-lmumps_common -ldmumps -lzmumps -lsmumps -lcmumps" ) - else - myeconfargs+=( --without-mumps ) - fi - if use hsl; then - myeconfargs+=( - --with-hsl-incdir="${EPREFIX}"/usr/include - --with-hsl-lib="$($(tc-getPKG_CONFIG) --libs coinhsl)" ) - else - myeconfargs+=( --without-hsl ) - fi - autotools-utils_src_configure -} - -src_compile() { - autotools-utils_src_compile all $(use doc && echo doxydoc) -} - -src_test() { - autotools-utils_src_test test -} - -src_install() { - use doc && HTML_DOC=("${AUTOTOOLS_BUILD_DIR}/doxydocs/html/") - autotools-utils_src_install - # already installed - rm "${ED}"/usr/share/coin/doc/${MYPN}/{README,AUTHORS,LICENSE} || die - if use examples; then - insinto /usr/share/doc/${PF} - doins -r examples - fi -} diff --git a/sci-libs/ipopt/ipopt-3.11.8.ebuild b/sci-libs/ipopt/ipopt-3.11.8.ebuild deleted file mode 100644 index 00636336536d..000000000000 --- a/sci-libs/ipopt/ipopt-3.11.8.ebuild +++ /dev/null @@ -1,98 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -AUTOTOOLS_IN_SOURCE_BUILD=yes -FORTRAN_NEEDED="mumps" - -inherit eutils autotools-utils multilib toolchain-funcs fortran-2 - -MYPN=Ipopt -MYP=${MYPN}-${PV} - -DESCRIPTION="Interior-Point Optimizer for large-scale nonlinear optimization" -HOMEPAGE="https://projects.coin-or.org/Ipopt/" -SRC_URI="http://www.coin-or.org/download/source/${MYPN}/${MYP}.tgz" - -LICENSE="EPL-1.0 hsl? ( HSL )" -SLOT="0/1" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples hsl lapack mpi mumps static-libs test" -RESTRICT="!test? ( test )" - -RDEPEND=" - virtual/blas - hsl? ( sci-libs/coinhsl:0= ) - lapack? ( virtual/lapack ) - mumps? ( sci-libs/mumps:0=[mpi=] )" -DEPEND="${RDEPEND} - virtual/pkgconfig - doc? ( app-doc/doxygen[dot] ) - test? ( sci-libs/coinor-sample sci-libs/mumps )" - -S="${WORKDIR}/${MYPN}-${PV}/${MYPN}" - -src_prepare() { - if use mumps && ! use mpi; then - ln -s "${EPREFIX}"/usr/include/mpiseq/mpi.h \ - src/Algorithm/LinearSolvers/ - elif use mpi; then - export CXX=mpicxx FC=mpif77 F77=mpif77 CC=mpicc - fi - sed -i \ - -e "s:lib/pkgconfig:$(get_libdir)/pkgconfig:g" \ - configure || die - autotools-utils_src_prepare -} - -src_configure() { - # needed for the --with-coin-instdir - dodir /usr - local myeconfargs=( - --enable-dependency-linking - --with-blas-lib="$($(tc-getPKG_CONFIG) --libs blas)" - --with-coin-instdir="${ED}"/usr - $(use_with doc dot) - ) - - if use lapack; then - myeconfargs+=( --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" ) - else - myeconfargs+=( --without-lapack ) - fi - if use mumps; then - myeconfargs+=( - --with-mumps-incdir="${EPREFIX}"/usr/include - --with-mumps-lib="-lmumps_common -ldmumps -lzmumps -lsmumps -lcmumps" ) - else - myeconfargs+=( --without-mumps ) - fi - if use hsl; then - myeconfargs+=( - --with-hsl-incdir="${EPREFIX}"/usr/include - --with-hsl-lib="$($(tc-getPKG_CONFIG) --libs coinhsl)" ) - else - myeconfargs+=( --without-hsl ) - fi - autotools-utils_src_configure -} - -src_compile() { - autotools-utils_src_compile all $(use doc && echo doxydoc) -} - -src_test() { - autotools-utils_src_test test -} - -src_install() { - use doc && HTML_DOC=("${AUTOTOOLS_BUILD_DIR}/doxydocs/html/") - autotools-utils_src_install - # already installed - rm "${ED}"/usr/share/coin/doc/${MYPN}/{README,AUTHORS,LICENSE} || die - if use examples; then - insinto /usr/share/doc/${PF} - doins -r examples - fi -} diff --git a/sci-libs/keras-applications/Manifest b/sci-libs/keras-applications/Manifest index 44dbf63dc6ca..261329da76de 100644 --- a/sci-libs/keras-applications/Manifest +++ b/sci-libs/keras-applications/Manifest @@ -1,5 +1,3 @@ -DIST keras-applications-1.0.7.tar.gz 289570 BLAKE2B 5f6fe2419b2de41f718e6beae56c8c4910efe0e6c282ad32b792f50a8b9ebc88c866eed84fb8c7dcbbd1680de605036a0012458af6d14250b1f8624ead5013b7 SHA512 5f2c5fb7b7f644a881f8cc9040633a69d3a72562206dd0601c8b31bf4fd3bb2aeee07a0d7040311f0fd42f16330bc249d306cdfa01c7b60717b05726040a0b78 DIST keras-applications-1.0.8.tar.gz 288909 BLAKE2B 41d70552f5dfdd0c1385a7ca0b527ce0e0c3441c1ee3f72c90569f3e43e6a82485d0d4affee83afc645f3b99a519facb41d11a3fc1384c98f44182dddbea02bb SHA512 58af0d8e0289d97b416559bf235deeb9a5405d50f2a2c93612cdbde36e4d6d006db5c570acb814c209414a4b61c2310a99257aa0e2feaf24e5260d549b8b94f6 -EBUILD keras-applications-1.0.7.ebuild 545 BLAKE2B 3c15aa73da882251f52cf1003966d6d7c696fcbe90573512340ddd81cfc3f5f5f7e983f9b5f79980dcdad10e57886d8695230ac6b4e1163e152480ae2a61c127 SHA512 3eb8da437ec1b8dfe8db19a6498c35315e7a10de07cc8fd7add6901ab50f37663b77c1863dfceb8364395505e9470a5b6f0280bcb6813045a4798110adbb739e EBUILD keras-applications-1.0.8-r1.ebuild 545 BLAKE2B 3eda62b09fa5c14c38d97b7be5be04d0558c3c661457a244f3a111636c1ab82a9758ecfefab9349e27a54e7ae7f2cf292a5d13675a890e4f99713ca01dc3efcf SHA512 dd8983c6bb870b80a059c583b0b433d05c3dfc1b45ba9dec1bbfc617aebe416aab9417656c7a93b3236ded73f091219f4b2289e705c48583bcf66d7dcbe42698 MISC metadata.xml 621 BLAKE2B 4f375ddfcfed6172df186350f7bd3dbfbcacea34f555b14719af43f58b140d73e378cd0a5efd8438ed2a0006f3552febc684b4fce85aeb88fb2c9bf819c06c4b SHA512 9dbb366d483843279cc7532b56a877313a7c39de25c93c313a2957092f9766ce5715a83dd87ef116d1733a7cc399319025ce1eb0e7ad174e2b7441360a9f5560 diff --git a/sci-libs/keras-applications/keras-applications-1.0.7.ebuild b/sci-libs/keras-applications/keras-applications-1.0.7.ebuild deleted file mode 100644 index 97ad5b054868..000000000000 --- a/sci-libs/keras-applications/keras-applications-1.0.7.ebuild +++ /dev/null @@ -1,20 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python{3_6,3_7} ) -inherit distutils-r1 - -DESCRIPTION="Keras deep learning library reference implementations of deep learning models" -HOMEPAGE="https://keras.io/applications/" -SRC_URI="https://github.com/keras-team/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="" - -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-python/setuptools[${PYTHON_USEDEP}]" diff --git a/sci-libs/keras-preprocessing/Manifest b/sci-libs/keras-preprocessing/Manifest index 5bb5bfd37f26..9abce9267ff6 100644 --- a/sci-libs/keras-preprocessing/Manifest +++ b/sci-libs/keras-preprocessing/Manifest @@ -1,7 +1,5 @@ DIST Keras_Preprocessing-1.1.2.tar.gz 163598 BLAKE2B 94d0bac41ac140015a5d46453c99e1180c8c06d8fab4d6707890b1f24466d287f6da54d66b395e5e50c7aac67cc0abc8153fbfbeb4ffb0e79561bca528a6b81b SHA512 aae4d52accdfb9df260070336b1c5a628e57563978f7cb299aa67a6265f26eb44deb803cef795616a5e94cd8bcd2b9aa067570258fff96642b88cc0c701c3cec -DIST keras-preprocessing-1.0.9.tar.gz 46476 BLAKE2B af80a6647bb56f8c4dba93120bc2b70db36d2c6a0e36c3be9a4843e5c36c9ffe50db1cd9396eecd47f6c0595c110825d70d2e6b28a29a0a199b5cfcc499e4440 SHA512 93ef9b294638bfeaea82170b323f08b261a2519f5ee8b9aac7d88e5b32c6486646d91075cea71bfbc27780c8af55125319873361f0431d48b451e574d1e7a400 DIST keras-preprocessing-1.1.0.tar.gz 50631 BLAKE2B 235a1a7d296684e5405c6472026a53b1930923e74065529ba6921e91bf8849d35c02378f8eeabc4f532a4e25937e8fd8f712a59067c5b358afe10b88e1531fcb SHA512 68c71e82ea2139d3db4142c86a2c404e4d65a9a881f72b07b4ccf28733b93a9e4837f91534a20c3ca5128600d8b885cc8723181d96c9045d5280ad7f84091cbb -EBUILD keras-preprocessing-1.0.9.ebuild 595 BLAKE2B bc5f3052d03249c8210460d2b15a3252b4f4818fe8924f885a0cdad36ee429fd22c2f5e31c93306e6014ef42bc8a0c18cc92c4aed579f0c2791570fef63a4765 SHA512 8cb56546d094f03c846d5cf32fb4c38266cc8029e6caca76005f07b3afc5f2a77a28aa571742f77fb640a06e14aa2909d9b319061484e76f08d9230d3552d821 EBUILD keras-preprocessing-1.1.0-r1.ebuild 595 BLAKE2B 255aa42beacfe93ab35503576281c262840d62c197f897d3ce1343cb24c20baa1da6082c588f53269093d70a6673f61698d03fd690bda655f3aec80e2fea5c3d SHA512 3882c7b38a81de131d1d60d83491eebdfbbe25718447cd20000a657194e106e99647d2d99c570fd28cee7a24813d25a99bf465155768d6cfc1806e6df0281444 EBUILD keras-preprocessing-1.1.2.ebuild 673 BLAKE2B 0d0247ab25cc2cbd606f9d2141980aca0d7e5580ac713762c3b6f029d2f3d6eb809c68bd254e869d4a44af30aafef071398e43bd231918149dcbed2abd755607 SHA512 4ddaea181fb81d51cb8e05d5d9b8d7254ebd6e3654161866ad72a16f815d8c8da72ed558ec7e75032f2997263cdf8579c3a2e9918adca71cd2b5e3b4287ea6a8 MISC metadata.xml 585 BLAKE2B a2f92ac4e2b9af055313a13de9bcbaee7ab7ca2efa4790c82027aece4b629bfa7a73c5ed0286b0f24f1853330057527009afe6ab1722f19d9c504a9d0737e827 SHA512 371cc3f5897bd28c62642a8857a22e775e24aa917bc0e58bb4de4e0a2a6580174ba35cfda2e8dd83599e2180fdfb3f11a953e7076c6d87073e1465b145b115e9 diff --git a/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild b/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild deleted file mode 100644 index c0bf90c60e2e..000000000000 --- a/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild +++ /dev/null @@ -1,22 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python{3_6,3_7} ) -inherit distutils-r1 - -DESCRIPTION="Easy data preprocessing and data augmentation for deep learning models" -HOMEPAGE="https://keras.io/" -SRC_URI="https://github.com/keras-team/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="" - -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/six[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-python/setuptools[${PYTHON_USEDEP}]" diff --git a/sci-libs/klu/Manifest b/sci-libs/klu/Manifest index f8a675bc71db..b45d8f2695b5 100644 --- a/sci-libs/klu/Manifest +++ b/sci-libs/klu/Manifest @@ -1,3 +1,5 @@ +AUX klu-1.3.9-dash_doc.patch 1008 BLAKE2B 97f5f169cdb1220bf8970fc2a31767237b81363f9950ebe48a03d94dadcb9f270d4ce625788052c20cb4cde2c81137a68e26a4498c5e404ae9011811b2c70da1 SHA512 1b11b38c701a41f4a5d166dfa2f3c6cd2760fe6745083b042b1fc3d6bc93e05e3becfcde0f6be3504ba520bbeeaa70671d7c928665a256c71581a8e97f9c9f5a DIST klu-1.3.9.tar.bz2 635596 BLAKE2B 6c6c84cf1b30e78cbaaee6bebed21c806d1672bee5f7ea061e7ef057ff56fd456e8517ca2ff1018a14ebcbc8f96b9e87989e22d8996817394666e6d8d2d727dd SHA512 b7fd862fe8443596758c27f9c918e367b3b3816340836e74cf8d97a2e755fbe07d133778eea3d054bc70243fa15c2bd71f4fd90c1179879661ba2d624b8f0706 +EBUILD klu-1.3.9-r1.ebuild 861 BLAKE2B ee8832e087056241c3deb13b997c197ba3f4706af57c2e378a4d51f69b302413dfaec9206f4d869cfc94f138ea840482d5b233ac738293d7f33e955ca5f4a97a SHA512 3909d5167e8e7e20b3ae51860a3c64a0a8b9cf663d39982cfc66707c04498e644c104ccac295d4cdd59e1a79bc6b9f5fe2d3ec210c495fee9f52ebac780620f8 EBUILD klu-1.3.9.ebuild 652 BLAKE2B d1de231723de826b04a2251f37813f28ca7cf7c545149c8c345b02563f884cb086ada7462ee9d5390dc1afe00769fcf377478c3aaa1fc7abaf90982b59650f93 SHA512 8146668bcc64b4bc8b854d44c1ef5c97661ba32a226225503650c7f1aea9479ed73f152dbf008a377b7d98dd187d121d2c5622ea7ce4cd9ab2543b63ff547333 MISC metadata.xml 460 BLAKE2B f4d619f68a16bcbaaf2b44a9fd1156cc88dd02d38609da2e56f8b242df9744fbbe4b7befff2ae34f084b5895ab9a537e62182015008e596fddda33ea891698b5 SHA512 1e01a7e6576552beac665a8a0affe21809785f33316767ef6e0bcc59dd019e5100f1ed16ca1bd91ee1daf102de2122ed57ff0980dd6b4f21270f8c4c5f832db7 diff --git a/sci-libs/klu/files/klu-1.3.9-dash_doc.patch b/sci-libs/klu/files/klu-1.3.9-dash_doc.patch new file mode 100644 index 000000000000..1f7bc8edfe10 --- /dev/null +++ b/sci-libs/klu/files/klu-1.3.9-dash_doc.patch @@ -0,0 +1,27 @@ +diff --git a/Doc/Makefile.am b/Doc/Makefile.am +index 7d1116a..fd46b1d 100644 +--- a/Doc/Makefile.am ++++ b/Doc/Makefile.am +@@ -1,15 +1,14 @@ + + KLU_UserGuide.pdf: +- echo '\begin{verbatim}' > klu_h.tex ++ printf '\\begin{verbatim}\n' > klu_h.tex + expand -8 $(top_srcdir)/Include/klu.h >> klu_h.tex +- echo '\end{verbatim}' >> klu_h.tex +- echo '\begin{verbatim}' > btf_h.tex +- echo 'See your btf.h local install' >> btf_h.tex +- echo '\end{verbatim}' >> btf_h.tex +- echo '\begin{verbatim}' > klu_simple_c.tex ++ printf '\\end{verbatim}\n' >> klu_h.tex ++ printf '\\begin{verbatim}\n' > btf_h.tex ++ printf 'See your btf.h local install\n' >> btf_h.tex ++ printf '\\end{verbatim}\n' >> btf_h.tex ++ printf '\\begin{verbatim}\n' > klu_simple_c.tex + expand -8 $(top_srcdir)/Demo/klu_simple.c >> klu_simple_c.tex +- echo '\end{verbatim}' >> klu_simple_c.tex +- -ln -s $(srcdir)/*.{tex,bib} . ++ printf '\\end{verbatim}\n' >> klu_simple_c.tex + $(PDFLATEX) KLU_UserGuide + $(BIBTEX) KLU_UserGuide + $(PDFLATEX) KLU_UserGuide diff --git a/sci-libs/klu/klu-1.3.9-r1.ebuild b/sci-libs/klu/klu-1.3.9-r1.ebuild new file mode 100644 index 000000000000..971207fad7c7 --- /dev/null +++ b/sci-libs/klu/klu-1.3.9-r1.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools + +DESCRIPTION="Sparse LU factorization for circuit simulation" +HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html" +SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" + +LICENSE="LGPL-2.1+" +SLOT="0" +KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux" +IUSE="doc static-libs" + +BDEPEND="virtual/pkgconfig + doc? ( virtual/latex-base )" +DEPEND=" + >=sci-libs/amd-2.4 + >=sci-libs/btf-1.2 + >=sci-libs/colamd-2.9" +RDEPEND="${DEPEND}" + +PATCHES=( "${FILESDIR}"/${PN}-1.3.9-dash_doc.patch ) + +src_prepare(){ + default + + eautoreconf +} + +src_configure() { + econf \ + $(use_enable static-libs static) \ + $(use_with doc) +} + +src_install() { + default + + # remove .la file + find "${ED}" -name '*.la' -delete || die +} diff --git a/sci-libs/libaec/Manifest b/sci-libs/libaec/Manifest index a64de13f78b5..3f6cb667479b 100644 --- a/sci-libs/libaec/Manifest +++ b/sci-libs/libaec/Manifest @@ -1,5 +1,3 @@ -DIST libaec-1.0.2.tar.gz 767910 BLAKE2B 4d843839b21d93a7ae0f90627217978d1d7262dff35962bb7fe7a9f62f57b5042c36278ff61ad7d7aa3ad1a7cdd1ceb75a59dcc1ab9b3d1c899c506ffe5819d3 SHA512 28a8839089e4b643b259cb8679b96e602a35098d1129baae6b3923767060e5deabfa33256d628a8bcbf205368cda5f2e6701078de0caccf44e0597d932a67ba2 DIST libaec-1.0.4.tar.gz 2775768 BLAKE2B e083c5e268296227b5193c2192f7c52d47f8cef08823de013453ffd2c5f8c115921a79c60286e7582cbfcbb914c5e8ad4c2493e4ec89395df3be2206bc893591 SHA512 74d01208ad3a426d68895dbfa8a830c96618a219f27745ecfd94b248462748e772c266e7fb0d4e4f4c75f8953a97f835fb2ece67317cf9e9a7495360362d22eb -EBUILD libaec-1.0.2.ebuild 739 BLAKE2B 57c3fb5b3d94e17960c94ce135226386b16d5fbb481fcafe730e8b8ac836d8f8e9efe1de535dbdfaec57fe8fe8b0748d4a3604b626c4d319ebc4a23ac0c172f4 SHA512 eef3ad4f0b72a5fb168b5cd887dcf27cefa93f46e818ab3efc7198187948baec4f10fcbb61f5c49def4d6d15b816486bb022cca54a5401dcc706faf348088f7b EBUILD libaec-1.0.4.ebuild 745 BLAKE2B 15fb3d9c5e6cb36aa8b37c81f15d2de56fc5c4d3e8d4c72ec14b3a47d3acf85fac212f96c9ed206d1b6e46912df7277bb13093b7279dbf04d73851153c60f283 SHA512 16a174299e151ceecc7ec2a7f3f792b29d2ed0bca618588a3417d68d276771e7c5aff18726e462b547d6a14cb1240bc900f6c38e4c97580ef4c651263374caba MISC metadata.xml 719 BLAKE2B d8294233ada6c2318c05d70c6062e7b7db0b0bab38410e9bd0c7d6f9834d1515cb138095d555f27f36c829fbbf7c83c141c1ce74213fba849da8704adf63889d SHA512 f0197c0cf374cb0771e4b2e3bfcc80f639d3e660943df1cab79eec68b515a605855f792b0b1627d24409cfb6cc2890ca7e96f4aace01639106ee50e14574ccf6 diff --git a/sci-libs/libaec/libaec-1.0.2.ebuild b/sci-libs/libaec/libaec-1.0.2.ebuild deleted file mode 100644 index 522312775eda..000000000000 --- a/sci-libs/libaec/libaec-1.0.2.ebuild +++ /dev/null @@ -1,28 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils vcs-snapshot - -DESCRIPTION="Adaptive Entropy Coding library" -HOMEPAGE="https://gitlab.dkrz.de/k202009/libaec" -SRC_URI="https://gitlab.dkrz.de/k202009/libaec/repository/archive.tar.gz?ref=v${PV} -> ${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0/2" -KEYWORDS="~amd64 arm64 ~x86 ~amd64-linux ~x86-linux" -IUSE="+szip" - -DEPEND="" -RDEPEND="szip? ( !sci-libs/szip )" - -src_install() { - cmake-utils_src_install - # avoid conflict with szip (easier than to patch) - if ! use szip; then - rm "${ED}"/usr/include/szlib.h || die - rm "${ED}"/usr/$(get_libdir)/libsz* || die - rm "${ED}"/usr/share/doc/${PF}/README.SZIP || die - fi -} diff --git a/sci-libs/libsc/Manifest b/sci-libs/libsc/Manifest index bf4b417dd5e4..60d7af01eb41 100644 --- a/sci-libs/libsc/Manifest +++ b/sci-libs/libsc/Manifest @@ -1,8 +1,6 @@ AUX libsc-2.2-autoconf_lua_version.patch 1310 BLAKE2B 5d6ced3339ced04b9681cb4940dc5b0bc130b87dc7fa357f91fffc3deb8316ecd1f3f504b578cdf105b533772e8ba9ec34f4410960721ace1ac7e5fba3a04a65 SHA512 51c417011b481712d3469fe86591c903e16cce2c06b83cc7e3ee663d75ad4910b60f8893f589fdd6a38282e1668a1f97d93c50fc360a5919379dec5520a8905c AUX libsc-9999_20201220-autoconf_lua_version.patch 1449 BLAKE2B 7212839168ab69f115cd177fa998cb8352f9c0abb06c4a89916a1e14b5d99695d15602700f891a8985f74ba19114e62da152bda3c74810d7b307762dadff837a SHA512 4993bc99cd7e88ee4fc523b14d859745fbc06ff3e89a80a96a2f33ba64e782c2c25ffd5620b93537056b17fe02a2648de54eee276174147d776c6747230b476c -DIST libsc-2.0.tar.gz 296392 BLAKE2B b5e1ca5cf6802ed38c32db5e7a77aec2fc636d88f2562314088dc16d13a0dccd24706276b05f8ddd70bc3769270a378c0089873fb2a21ebc93d6ca2622d7a58e SHA512 e4cfe42a1c1fe17412e1ffb6ebebe1f760861a7fb707a6f8fd01cdebda96b166ee05e7ff034f3b9e30de5e9baa82c9a2cebe93d40772dbd206603321de40559c DIST libsc-2.2.tar.gz 311542 BLAKE2B 0879be69208f0964d73cc297a64b158ad88344e876a90dd4bd39c80fc0cf8237f4551cb684dee36e08068fa04644b887ec56230335a9984363055c1248aa6185 SHA512 97953794fdeb985bedb1dc9378f10ed4824446c63762d7813aced3309c2d6b27368c91fecb22587dccdf8b3b42aaaba9e782b739086cf542570360795897ac14 -EBUILD libsc-2.0.ebuild 2103 BLAKE2B 927bf1d55667b156777f5833b287e6b0dd4344e0edb62b5106b7566d897919b9286d898956a2ad935e1993f80188779b83ef8bde30d82b4986ac92e909cad7f6 SHA512 6726b23ea21064fc5c848138137a2e05632f064f089a8e74cf57f2a8e9a5962699c26297807de5577f1a79400ec5a1987202acdd8cc8e3c85b5fc44d58ee2b31 EBUILD libsc-2.2-r100.ebuild 2311 BLAKE2B 8d0b691c72bef42dde074f7ad5b020b7b5afd0f6ffe0240f087652934df743054390ec7593f11b10c577a26d436101594d015542947b7703e009f4fd8f08e025 SHA512 48a7eb9ef3125b454509d0911100e72059d49f1a44d5187f1f1aebb5b1d810b2ca86e535cf88ca87a4dabf34f76f1bfd07ff20c6b2ced090617e72eb1c91ed18 EBUILD libsc-2.2.ebuild 2103 BLAKE2B 4471ed0611a957d6cef11a6ce24fdafafc8ea3660d5c293885c8bc1027f9b604c5e2790495b067048cb16f47cb7dca6fe8a385f148087ef6a88cd124bbe0bfd4 SHA512 7d8c63b652a8eb7efbd7cb94039d2b2df87357670d8140a1f767d229144aac1b8a56ecbed302a1d7f68379fd1b6b90447db10e2be20d1d1cacd52a9db4b57a2f EBUILD libsc-9999.ebuild 2321 BLAKE2B f0e3a41dd5d5aca28ef444e8291272e9b15eb5f69e6af3e77b99c8b3ce4efc113606c66002e1e7932980ee80ad5b7ba60d388c9f64a861ea3f5ff693fab46100 SHA512 9fb34025294f64d13097d4c66fd8bec2aaa388401c7cda320c6fd66bc7b37b3c42496b43b6790288ac5249cfb16280c95bd0d45e1eae86af6db7931f55d5d678 diff --git a/sci-libs/libsc/libsc-2.0.ebuild b/sci-libs/libsc/libsc-2.0.ebuild deleted file mode 100644 index 8c40ce589305..000000000000 --- a/sci-libs/libsc/libsc-2.0.ebuild +++ /dev/null @@ -1,93 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit autotools toolchain-funcs eutils - -DESCRIPTION="Support for parallel scientific applications" -HOMEPAGE="http://www.p4est.org/" - -if [[ ${PV} = *9999* ]]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/cburstedde/${PN}.git" - EGIT_BRANCH="develop" - SRC_URI="" - KEYWORDS="" -else - SRC_URI="https://github.com/cburstedde/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" - KEYWORDS="~amd64 ~x86" -fi - -LICENSE="LGPL-2.1+" -SLOT="0" -IUSE="debug examples mpi openmp romio static-libs threads" - -REQUIRED_USE="romio? ( mpi )" - -RDEPEND=" - dev-lang/lua:0= - sys-apps/util-linux - virtual/blas - virtual/lapack - mpi? ( virtual/mpi[romio?] )" - -DEPEND=" - ${RDEPEND} - virtual/pkgconfig" - -DOCS=( AUTHORS NEWS README ) - -AUTOTOOLS_AUTORECONF=true - -pkg_pretend() { - if [[ ${MERGE_TYPE} != "binary" ]] && use openmp; then - tc-has-openmp || \ - die "Please select an openmp capable compiler like gcc[openmp]" - fi -} - -src_prepare() { - default - - # Inject a version number into the build system - echo "${PV}" > ${S}/.tarball-version - eautoreconf -} - -src_configure() { - local myeconfargs=( - $(use_enable debug) - $(use_enable mpi) - $(use_enable openmp openmp) - $(use_enable romio mpiio) - $(use_enable static-libs static) - $(use_enable threads pthread) - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" - --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" - ) - econf "${myeconfargs[@]}" -} - -src_install() { - default - - if use examples; then - docinto examples - dodoc -r example/* - docompress -x /usr/share/doc/${PF}/examples - else - # Remove compiled example binaries in case of -examples: - rm -r "${ED}"/usr/bin || die "rm failed" - fi - - # Remove ac files, bug #619806 - rm -r "${ED}"/usr/share/aclocal || die "rm failed" - - # Fix wrong installation paths: - dodir /usr/share/libsc - mv "${ED}"/etc/* "${ED}"/usr/share/libsc || die "mv failed" - rmdir "${ED}"/etc/ || die "rmdir failed" - mv "${ED}"/usr/share/ini/* "${ED}"/usr/share/libsc || die "mv failed" - rmdir "${ED}"/usr/share/ini || die "rmdir failed" -} diff --git a/sci-libs/libticalcs2/Manifest b/sci-libs/libticalcs2/Manifest index 35eb7e869848..a31e7fe101ac 100644 --- a/sci-libs/libticalcs2/Manifest +++ b/sci-libs/libticalcs2/Manifest @@ -1,5 +1,3 @@ -DIST libticalcs2-1.1.8.tar.bz2 524151 BLAKE2B ace580d1bb810b741fd40d310cd55d0743212fbd279e900e5a9e26000169e21a63a970300d7e355cff13f5893f61e79d02a633f4cfecd42f1a0446c8f666323a SHA512 0e09148006f5ee227d1b347ef44a6e755cb1dd757b8ff99e0f006aec0bc37c40dc5e293e44a0d91fc966b47da9113b4f00a71d9d9aa5cfbea4b01487232c1c08 DIST libticalcs2-1.1.9.tar.bz2 269963 BLAKE2B 9cebc63647afe5b7e45b44f4e6a48902b9ae551d38eeb4bb2112a84988355bb7beafb27192b90c597b9613f8cb2dfb67f2b2eeb2e270b1d3fdd620f8f8d0c2cf SHA512 a55fa92df787929397f4ed3e8f922355f71c7883459ceb98fbb8d39d18f06441147188aaabf7a67083d70549443e439744e68527742e2b7b5d3d2838cc41b4da -EBUILD libticalcs2-1.1.8.ebuild 872 BLAKE2B 3bdeb5dd4cee111070fd568afd532c0ffdf36b61114983a020d016b532111f79b5b4479f3fa5651817c952ec3c0ba7f726c4d6566649b03e68ee4ca3c0c4322e SHA512 5971c7ffe9d8f22c224b967047b4d850d9de590ade19d01254668c851395ec483d4e0e13946cd1cb0adbbda56fcd42f27a05d1a4e7793fefad2014a36e2e47eb EBUILD libticalcs2-1.1.9.ebuild 929 BLAKE2B b837566aba7ffc56df3b76897cffd83e269402e812780abab4b5ca2c6a2a943198f52c5adecfdcdcaedac3cc956bda2d1b840055c652605b4b7126647e0e80c3 SHA512 53bcbcd5017d6ed7c586295774f1a534c3cfa5ce833a282239fbed6a2893ff273760d36a29878e2d35691ad681cfb4be4909d7a9e8cfc233422c3c55a3c6215f MISC metadata.xml 672 BLAKE2B b547817f270276bc996870f80c19e3fae791b858786b70731e7f62d242a8cf5483f58b4160d8ce94c964f78dbd506b6ba0ece865b3594a41f63ed3f16d4cc6cd SHA512 7a9782159034bebdad0a67ea352f898a577452ac83f6525f30092cc240a412f938c140da4fad7a254ba5679017de13af5aeeffe5a69c610a01bc882c9ee69d24 diff --git a/sci-libs/libticalcs2/libticalcs2-1.1.8.ebuild b/sci-libs/libticalcs2/libticalcs2-1.1.8.ebuild deleted file mode 100644 index c40ed386d70d..000000000000 --- a/sci-libs/libticalcs2/libticalcs2-1.1.8.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit autotools-utils - -DESCRIPTION="Library for communication with TI calculators" -HOMEPAGE="http://lpg.ticalc.org/prj_tilp/" -SRC_URI="mirror://sourceforge/tilp/tilp2-linux/${P}.tar.bz2" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" -IUSE="doc nls static-libs" - -RDEPEND=" - dev-libs/glib:2 - >=sci-libs/libticables2-1.3.3 - >=sci-libs/libticonv-1.1.3 - >=sci-libs/libtifiles2-1.1.5 - nls? ( virtual/libintl )" -DEPEND="${RDEPEND} - virtual/pkgconfig - nls? ( sys-devel/gettext )" - -DOCS=( AUTHORS LOGO NEWS README ChangeLog docs/api.txt ) - -src_configure() { - local myeconfargs=( - --disable-rpath - $(use_enable nls) - ) - autotools-utils_src_configure -} - -src_install() { - autotools-utils_src_install - use doc && dohtml docs/html/* -} diff --git a/sci-libs/libticonv/Manifest b/sci-libs/libticonv/Manifest index 87c325db28b2..a1e6aece6cfd 100644 --- a/sci-libs/libticonv/Manifest +++ b/sci-libs/libticonv/Manifest @@ -1,5 +1,3 @@ -DIST libticonv-1.1.4.tar.bz2 344616 BLAKE2B 38ab1d2c60873c8c544de13a605429212d75799d665470a2aabcde0f74bdd42a71b2ef7fce25cd41a691bb7f43ca68e0db8dce44643e22bea5db405865de80b8 SHA512 15ceb5acff888c841febc0d3ae96e3df649cce302b4ae2dc4ca150e3cb483337548fff0b32f0308bc759a08e6a167beaa8a2a4349f8ce47a2a7b62755a601018 DIST libticonv-1.1.5.tar.bz2 86036 BLAKE2B 494494f59c8fbdad183c2e7d4b66f3313ce1b968b5898b31da9bc3d54f73aafbe93ce676928dd9b986fa5eaafe12ad333e9dc0da2e3abf94bddfeebf481727e2 SHA512 ea589344a656c5c7d28ed45e8da36bf7b746b7a82d77a257ddd305e2ebdc34f0ae14a6090e991f47ef7ad37cdc8d7182181c705fb0814e671ef764ca2a6dc2bf -EBUILD libticonv-1.1.4.ebuild 769 BLAKE2B 4a01d51c15e677aeed94b166587cc543515d291b8084c6375f697b0736b2638181a3185f00dac94d26a904224091011e9a056c97d34aac543f20e66606e19faa SHA512 ea2e7cf0a0d6d049b31c5d58e99a21e6f8d5169d932d70cc5cdeada4c1b99d8838c313f8d1ad025303fd851a968c2fc8f84bcb78e94c6202c161a8a9b9e5a6e5 EBUILD libticonv-1.1.5.ebuild 805 BLAKE2B bcbe061d0ee48e5bf8ff6053d136710671f15652da1296257028b13cea50c354f84ad179ca6c370205123f5ceac30f9df59182fa393c66bbc23e5bfee0252d0c SHA512 c9da206fb7955d62775f0b960931a9fc73e4970ccbdb3d1344e490154d8e3df11634851113eb62426c6bc115315901da4aa6c778acad51a5431b422d15bd91e7 MISC metadata.xml 556 BLAKE2B 19381963c9de37b8c2186f8c7c585cf2de6b5cc661bca1a3519c824fa045bc5f4d2533b65ab57e37bff6a3e650090f79192824401f6f6496385efd1d89739c71 SHA512 da1ed25a63db4e89d62896fe30345739ca77b3f655b9f394a0221126cfb958420728b8d8a1f341012b2f37a3a5709f1704c496d781a3eb2de57ebe76c15dda83 diff --git a/sci-libs/libticonv/libticonv-1.1.4.ebuild b/sci-libs/libticonv/libticonv-1.1.4.ebuild deleted file mode 100644 index d36975c9db21..000000000000 --- a/sci-libs/libticonv/libticonv-1.1.4.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit autotools-utils - -DESCRIPTION="Charset conversion library for TI calculators" -HOMEPAGE="http://lpg.ticalc.org/prj_tilp/" -SRC_URI="mirror://sourceforge/tilp/tilp2-linux/${P}.tar.bz2" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" -IUSE="doc iconv static-libs" - -RDEPEND="dev-libs/glib:2" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -DOCS=( AUTHORS LOGO NEWS README ChangeLog docs/api.txt ) - -src_configure() { - local myeconfargs=( - $(use_enable iconv) - ) - autotools-utils_src_configure -} - -src_install() { - autotools-utils_src_install - if use doc; then - dohtml docs/html/* - docinto charsets - dohtml docs/charsets/* - fi -} diff --git a/sci-libs/lmfit/Manifest b/sci-libs/lmfit/Manifest index 8ac4b75fc76f..eeba3c71c167 100644 --- a/sci-libs/lmfit/Manifest +++ b/sci-libs/lmfit/Manifest @@ -1,11 +1,4 @@ -AUX lmfit-7.0-cmake.patch 2226 BLAKE2B 317d232718c8172508d67de527161b074676bf62ff4da45d21a9444626fb2e84150c0b3fb099a6a9c5247ea2ec9b53c89b4b0f6d64f8b3d6352629e440e89ad4 SHA512 a9e95299baac18818a131ac67c82d49777e7cae6629d9f6bedc2e7f175f2d6a416888d973064df13d79315a5445d95c0e9a2e3d5fc1ac476fdb2b688dbe601e3 AUX lmfit-8.2.2-cmake.patch 2769 BLAKE2B 7f67349b93cde9bf14ce5295d3a32a73301897e1643be5beea71ccb8e9d7a9a128c4160b7eb5dcbdfb1189ee6e774e151bd5f71b3af4d7ec0a00ba61f7ad79f1 SHA512 93b1f5242e1152dea4910c96b2c561a370f2e2a78fc730b5ee00257049f96a253badf5d7752a1bbac320df43e436d8f4d913fbf8d40f7b36e3579efb16147417 -DIST lmfit-5.1.tgz 345077 BLAKE2B df27621745601ffacd2110b28f3e3ea2b06d4c8c3c8fad5dda13bb4d6c2bd9f2a793ff88fab4f6d8c78075278bb26f3f424bd0074095e67ab1780a9d57b72b4b SHA512 1df6ed51d7f2137529793948f6c57ef3658932c9198776925a9f6e1d586352651c93aa053a064db7a201dbb848a7108f284223feff45171d142087539d834b29 -DIST lmfit-6.4.tgz 388809 BLAKE2B 48aa619642ac3fd009ec6a8f8b44ee4c800fc3f33e2603b557218cdf37c789159dc3947a648d560b9e2dd7fef08a6644fd25ac61505859dc3b1d151eeea58c27 SHA512 2bd0f24dd4638345b8b1ce6803ddcf45ca3ef888eb285e99f9f158c2e30b0f96016d9d84a112cdbf28f2ba98470e54fe773416179a65264426043c9a5186757d -DIST lmfit-7.0.tgz 37950 BLAKE2B a509110f70e7e863d1172b8d91f7439763f0434702f265751e9955494f4982b4c17f0baaa080af86e5cae7f535555e27b98b45ba6a529061d107e53bdb9fd698 SHA512 78f479786c6e5c417781c6d629f5a517335fac70df049fafdefd511485da4e542c988d69c998f96eaab4306160de4bb09a631ca6ffff74bba70c51428d734fc3 DIST lmfit-8.2.2.tgz 31970 BLAKE2B 67eebc0e58d3d78057afcd84f35adcfea783c8501a5f8934dd07c38eb2419b1c43bedd3401a830a993005913138bdf8d1dc73c2142983b9f881f0db9bec06b93 SHA512 5835dce914027429cb36765543cf6b872e4ef1acd8feaeca281f9edf286fda89db78fbc0713dcfea4e4f2fe55a1b05317e6428980060bc3acce579ef1fa0c271 -EBUILD lmfit-5.1.ebuild 521 BLAKE2B ddd63fb8423124de64615757ee4eeda6ec490191563521742f2a74465a0232e35fb7bb90397338d7fa0ab80df0add34eb954c14d9bca026843b0316a4150ec10 SHA512 f6cabbe8f41dc5f652408b615d411fd8c42125a93e083b71ba2605776021d577f4bcfb3839455549a7c0c25b1e9fe18668572fa6677fb0ee92a19058f2a98da3 -EBUILD lmfit-6.4.ebuild 521 BLAKE2B ddd63fb8423124de64615757ee4eeda6ec490191563521742f2a74465a0232e35fb7bb90397338d7fa0ab80df0add34eb954c14d9bca026843b0316a4150ec10 SHA512 f6cabbe8f41dc5f652408b615d411fd8c42125a93e083b71ba2605776021d577f4bcfb3839455549a7c0c25b1e9fe18668572fa6677fb0ee92a19058f2a98da3 -EBUILD lmfit-7.0.ebuild 547 BLAKE2B ca24a9539256e249cb06d88ae1077a13a0c3ff62257d9eaa0751b3b56ecb6e4fd6bba4d8fa8553493eeefbd361b10e4fa056d807f151fce0077084d9220400e2 SHA512 1c4440f1d2a3a9ab910a740b731ae83645d7a62a38417639080cf5845880c5e498be08ac8a5a58545f6daeec963f9f784d19ed03054952ad4230ffdb7f5e1c86 EBUILD lmfit-8.2.2.ebuild 540 BLAKE2B 4ed1e259446562f1a977c5996cf903fd6ae82cbe37cbcbd9b037ee4e58a3fe2f88d2b720a1aa2207aeaad8fd63a6aac258137a93e9a580f84fda5d6267e84826 SHA512 b89e706570aba767ebcc5cc0bf0561a6c0301d7c7fedbad9ce9120903f83eeae875e0b033de8fe5c7c42d838af19b23063722b153663918cdbf1c953759e89e0 MISC metadata.xml 328 BLAKE2B fe29c76e5725821e31de0e2b14e0b975d5b8838e9907bf9ddacdb40cddc0529550fe83468226bf045fcf7ad95b2e56d31dc564dcf7e6d9a0401317313e2f0f27 SHA512 e6cf20d6c9130a16ce37c44890f928cb5dca1bb67425d8cdcc1ab7db22f7c8e2ac513b11c33b0f0495e25dd389ac926f2099d0253288eb1ed290f30e655a1c4f diff --git a/sci-libs/lmfit/files/lmfit-7.0-cmake.patch b/sci-libs/lmfit/files/lmfit-7.0-cmake.patch deleted file mode 100644 index 9ca4efb248e9..000000000000 --- a/sci-libs/lmfit/files/lmfit-7.0-cmake.patch +++ /dev/null @@ -1,66 +0,0 @@ -From 4e66272e1f5ebb220af517ca4d8804936f7f465c Mon Sep 17 00:00:00 2001 -From: Christoph Junghans <junghans@votca.org> -Date: Thu, 31 May 2018 18:11:26 -0600 -Subject: [PATCH] cmake: minor distribution tweaks - -- Use GNUInstallDirs to allow to configure install dirs -- Allow to disable injecting c flags - -Signed-off-by: Christoph Junghans <junghans@votca.org> ---- - CMakeLists.txt | 7 +++++-- - lib/CMakeLists.txt | 4 ++-- - man/CMakeLists.txt | 2 +- - 3 files changed, 8 insertions(+), 5 deletions(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index f2d0bdf..75753d3 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -13,9 +13,12 @@ set(lmfit_VERSION ${lmfit_SOVERSION}.0) # lib version - # --- Declare project-wide user flags, and set default values --- - option(FITTEST "Build with FitTest" OFF) - --set(destination ${CMAKE_INSTALL_PREFIX}) -+include(GNUInstallDirs) - --set(CMAKE_C_FLAGS "${CMAKE_CXX_FLAGS} -g -O2 -pedantic -Wall -Wno-sign-compare -Wno-unused-result -Wno-parentheses -Wno-unknown-pragmas -Werror") -+option(INJECT_C_FLAGS "Inject a bunch of useful c flags" ON) -+if (INJECT_C_FLAGS) -+ set(CMAKE_C_FLAGS "${CMAKE_CXX_FLAGS} -g -O2 -pedantic -Wall -Wno-sign-compare -Wno-unused-result -Wno-parentheses -Wno-unknown-pragmas -Werror") -+endif() - - add_subdirectory(lib) - add_subdirectory(demo) -diff --git a/lib/CMakeLists.txt b/lib/CMakeLists.txt -index 51b79bb..754f60f 100644 ---- a/lib/CMakeLists.txt -+++ b/lib/CMakeLists.txt -@@ -17,9 +17,9 @@ target_link_libraries(${library_name} m) - - install( - TARGETS ${library_name} LIBRARY -- DESTINATION ${destination}/lib -+ DESTINATION ${CMAKE_INSTALL_LIBDIR} - COMPONENT Libraries) - install( - FILES ${inc_files} -- DESTINATION ${destination}/include -+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} - COMPONENT Headers) -diff --git a/man/CMakeLists.txt b/man/CMakeLists.txt -index a718d3d..4a15597 100644 ---- a/man/CMakeLists.txt -+++ b/man/CMakeLists.txt -@@ -15,7 +15,7 @@ function(one_page pname section) - ) - install( - FILES ${CMAKE_CURRENT_BINARY_DIR}/${pname}.${section} -- DESTINATION "${CMAKE_INSTALL_PREFIX}/man/man${section}" -+ DESTINATION "${CMAKE_INSTALL_MANDIR}/man${section}" - ) - endfunction() - --- -2.16.4 - diff --git a/sci-libs/lmfit/lmfit-5.1.ebuild b/sci-libs/lmfit/lmfit-5.1.ebuild deleted file mode 100644 index b4b814cf6704..000000000000 --- a/sci-libs/lmfit/lmfit-5.1.ebuild +++ /dev/null @@ -1,24 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils ltprune - -DESCRIPTION="library for Levenberg-Marquardt least-squares minimization and curve fitting" -HOMEPAGE="http://apps.jcns.fz-juelich.de/doku/sc/lmfit" -SRC_URI="http://apps.jcns.fz-juelich.de/src/lmfit/old/${P}.tgz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64" -IUSE="static-libs" - -src_configure() { - econf $(use_enable static-libs static) -} - -src_install() { - default - prune_libtool_files -} diff --git a/sci-libs/lmfit/lmfit-6.4.ebuild b/sci-libs/lmfit/lmfit-6.4.ebuild deleted file mode 100644 index b4b814cf6704..000000000000 --- a/sci-libs/lmfit/lmfit-6.4.ebuild +++ /dev/null @@ -1,24 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils ltprune - -DESCRIPTION="library for Levenberg-Marquardt least-squares minimization and curve fitting" -HOMEPAGE="http://apps.jcns.fz-juelich.de/doku/sc/lmfit" -SRC_URI="http://apps.jcns.fz-juelich.de/src/lmfit/old/${P}.tgz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64" -IUSE="static-libs" - -src_configure() { - econf $(use_enable static-libs static) -} - -src_install() { - default - prune_libtool_files -} diff --git a/sci-libs/lmfit/lmfit-7.0.ebuild b/sci-libs/lmfit/lmfit-7.0.ebuild deleted file mode 100644 index e4258a74110a..000000000000 --- a/sci-libs/lmfit/lmfit-7.0.ebuild +++ /dev/null @@ -1,25 +0,0 @@ -# Copyright 1999-2018 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils - -DESCRIPTION="library for Levenberg-Marquardt least-squares minimization and curve fitting" -HOMEPAGE="http://apps.jcns.fz-juelich.de/doku/sc/lmfit" -SRC_URI="http://apps.jcns.fz-juelich.de/src/lmfit/old/${P}.tgz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64 ~arm ~x86" -IUSE="" - -PATCHES=( "${FILESDIR}/${P}-cmake.patch" ) - -src_configure() { - local mycmakeargs=( - -DINJECT_C_FLAGS=OFF - ) - - cmake-utils_src_configure -} diff --git a/sci-libs/lrslib/Manifest b/sci-libs/lrslib/Manifest index 5bc6d46b1776..e092b7b3ebe9 100644 --- a/sci-libs/lrslib/Manifest +++ b/sci-libs/lrslib/Manifest @@ -1,3 +1,5 @@ DIST lrslib-062.tar.gz 292745 BLAKE2B 1a2c0e264d590c38d83ee35616b1ec36d8a093b5c7f08179019261d8b321d5b95d8889ca6555ae69853f919d6d66358a865a8a2002516dfd560bec6658f3913d SHA512 1d644a7798580457ff266730f42f6fac317ec8cdf2509ad6028e7a838e5c4c948bd0f9499b840c227bad4269f7144ff72b87fe3a19bdb9ad0925ebe4a7bc4f9f +DIST lrslib-071.tar.gz 460165 BLAKE2B 67be1ffac1c09a94773c69fc2215db19623bc8bc78be74342a1eda497b70eed2d8cb8e9b34ce269177154a4aed6f7bde02f632a536999b24f3116b3e69be456e SHA512 451aa5dada106516aeed1688c1e939a2e216ac760addb483f9cc1d5d4ac62e88af2772a6fa589b217b544621d041d94386a79502483db2eeaf04e90c4a3fd78e EBUILD lrslib-062.ebuild 1109 BLAKE2B 265335aaed9ae273357aa6aca2a594535e9525ef65e2bb916aa1d595eb1973f21b0df851429e800d0f9fc00a4ab76946a84d872d40da246910ec0dce6bc7e914 SHA512 b7ef45f744372e6e7523417a77cdd9a1b42eb24cd26b71b99a6fbc20e3f6bd14cd5c5ed2faae3a8de8a52f9c1a2e6f8afa5dc31487e61feafcf55971cb87a901 +EBUILD lrslib-071.ebuild 1040 BLAKE2B da219853f43a1e2904b77663bf748b65eaa9c6cfbc823951c6495dab44e7198ee1b8684720a5fd5b3157bc73d483c4366ff26f89a3332fb8d7908a374f6f79a7 SHA512 61a1464b23126c7971a7bcfff7117cc44f93dc8a4b1e7adcf979be85894fcdf76e11ad7435b9f9a561692eacce3542a96583fba7e0531c1eebedcd7e06257a4f MISC metadata.xml 769 BLAKE2B 5660de1ef577fce0595a5d28eac737e1454bb97ec47a1993cfc9047a505ebef1d1c3984a129e4367ba5dfb2f8bc5975bcb7b7332e268528d820f1ea3231dabbc SHA512 f604771858909c1fb3f4f4c47094e9d6b16c1294575026246008c927a4d99aae6a2bdad45d66fe87c8be68b5a5a23f6fdfa72ec26a00a2a48a2ae7fe64cfb57d diff --git a/sci-libs/lrslib/lrslib-071.ebuild b/sci-libs/lrslib/lrslib-071.ebuild new file mode 100644 index 000000000000..1d033c0eef9f --- /dev/null +++ b/sci-libs/lrslib/lrslib-071.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs + +DESCRIPTION="Self-contained C implementation of the reverse search algorithm" +HOMEPAGE="http://cgm.cs.mcgill.ca/~avis/C/lrs.html" +SRC_URI="http://cgm.cs.mcgill.ca/~avis/C/lrslib/archive/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux" +IUSE="gmp mpi" + +RDEPEND=" + gmp? ( + dev-libs/gmp:0= + mpi? ( virtual/mpi ) + )" +DEPEND="${RDEPEND}" + +src_prepare() { + default + tc-export CC + sed -e "s/-O3/${CFLAGS}/g" \ + -e 's/$(CC) -shared/$(CC) $(LDFLAGS) -shared/' \ + -e "s,/usr/local,${EPREFIX}/usr,g" \ + -e "s,/lib,/$(get_libdir),g" \ + -i makefile || die +} + +src_compile() { + if use gmp ; then + emake + emake all-shared + use mpi && emake mplrs + else + emake allmp + fi +} + +src_install() { + emake DESTDIR="${D}" prefix="${EPREFIX}/usr" install-common + if use gmp; then + emake DESTDIR="${D}" prefix="${EPREFIX}/usr" install + use mpi && dobin mplrs + fi + dodoc README +} diff --git a/sci-libs/mathgl/Manifest b/sci-libs/mathgl/Manifest index 12047b54dbad..a855de425132 100644 --- a/sci-libs/mathgl/Manifest +++ b/sci-libs/mathgl/Manifest @@ -1,7 +1,4 @@ -AUX mathgl-2.4.1-mutex.patch 424 BLAKE2B 2077654d0b17d2a1ba63bfcc17bcc82dac7dcc274253357a70cd0b2d49f9c99b73b380c1d09ad70e302fd04449b9adb6392c12cbd03fcefae4a36a50491cf012 SHA512 d0a0101041c91ba4d295484b8b06825d66787600b98acc2ee6e3cb8ec54e86939deadc40924bce42b6eb782bf5c03c6a7687ac853d7bc393e75bcf9a809d7849 DIST STIX_font.tgz 2450541 BLAKE2B f725eb0264d9c3cb7c32a935e8857c4a21cb905a1dc6c9cc8a16408afdc7dd9b6fcd312a8c2f77aff5484605a39a9ee36e86ad0234adb5d6bcc5c8839101194c SHA512 c9124ec552074c98f15d6d3572a063598ca6bc598e3e78dcb5a5d57ae3928b5327a1374635f428ea1cefc9e51ee1d1aa9bd6ba9a306429fc6965140251d368b5 -DIST mathgl-2.4.1.tar.gz 22665490 BLAKE2B a9c9e0ec7d145262994a754dfbcf1f789d2777f9334c8b4e73696265adba4d2fd7283621857318264c2162841e81427df21f7bc7b951d83876fbc066d3b9068f SHA512 10fd016662ca60b9507942691f85b4d9151104319627732f4add0175475f7e8dff16e3645bb858c283b747f34e58f410d0532e94dc64cf8cf472938d3966402d DIST mathgl-2.4.4.tar.gz 23917716 BLAKE2B 11d36195c65b11f0eedbc1c946f600fd33bdc6ab8d3ff95c65634300527b2e06ffbb6615e4425896b87435fdb45bfad806f00e79edd26af4ab67bf223695d5cf SHA512 6955cb3630b4c17ab7eeb7542569a7fba653f592640f30700988abe340ecb17f09f1cbcd3903232797e9debc9f74ba2ea1f76f51935749bc8dec5e05951bb573 -EBUILD mathgl-2.4.1-r2.ebuild 3736 BLAKE2B 4a47173d6c953a295ea1612eb765799de684c9e9b763b41f67da35f04709961c45084e62a7706c29cbddd6a15ab5e57d69ac395832cbfb52eab9862c0608ebb8 SHA512 dcebfaaadd30c48b7103ed9f8d5cf2e363940fb1e42382580452e5f48aa636e6074410ae7bc455a333271cd8a0ec68d4977483e3424b8b3d8815d1d1988e8b7e EBUILD mathgl-2.4.4.ebuild 3668 BLAKE2B dd56806436422a28f89a859f3f029c8b3f55888643d38ad54472cc425cab1d40bc7de1f487b0ca8aee0f06e73bbedfda1678b5eb1ffb33ffc763e478706b68e0 SHA512 4593b632c4b15dae0c74f3a736df64cee7fa93dfa22b37cf4607b0068b00775fd4ce61d6b8bce05964411974fc79d88a43e16bae7eb7dfd973e2518d829bd875 MISC metadata.xml 800 BLAKE2B baa75251910016e5d059cebeebd85632d290ab0c3c50089de0485ffbcd08ee8ac59cbfe33824347a5a5c339c74ea7a56c516d4d38661e56f7498d628d748f64a SHA512 8b75db0a01ce59f22543701447630c56a82f9091b5901f85ae102de7deca281e09dbcb443b8ff2930cf18145d63504646a289fd5e77defccc4d38480596d1968 diff --git a/sci-libs/mathgl/files/mathgl-2.4.1-mutex.patch b/sci-libs/mathgl/files/mathgl-2.4.1-mutex.patch deleted file mode 100644 index 4ce7bb733114..000000000000 --- a/sci-libs/mathgl/files/mathgl-2.4.1-mutex.patch +++ /dev/null @@ -1,16 +0,0 @@ -diff --git a/src/canvas.cpp b/src/canvas.cpp -index ba4ffededb9b..7ea755d18265 100644 ---- a/src/canvas.cpp -+++ b/src/canvas.cpp -@@ -1219,9 +1219,9 @@ void mglCanvas::Pop() - {
- B = stack.back();
- #if MGL_HAVE_PTHREAD
-- pthread_mutex_lock(&m);
-+ pthread_mutex_lock(&mutexStk);
- stack.pop_back();
-- pthread_mutex_unlock(&m);
-+ pthread_mutex_unlock(&mutexStk);
- #else
- #pragma omp critical(stk)
- stack.pop_back();
diff --git a/sci-libs/mathgl/mathgl-2.4.1-r2.ebuild b/sci-libs/mathgl/mathgl-2.4.1-r2.ebuild deleted file mode 100644 index b9f2abff3f8e..000000000000 --- a/sci-libs/mathgl/mathgl-2.4.1-r2.ebuild +++ /dev/null @@ -1,163 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -WX_GTK_VER=3.0 - -inherit cmake-utils eutils wxwidgets multilib flag-o-matic - -DESCRIPTION="Math Graphics Library" -HOMEPAGE="http://mathgl.sourceforge.net/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz mirror://sourceforge/${PN}/STIX_font.tgz" - -LICENSE="LGPL-3" -SLOT="0/7.5.0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc fltk gif glut gsl hdf hdf5 jpeg mpi octave opengl openmp pdf - png qt5 static-libs threads wxwidgets zlib" - -LANGS="ru" -for l in ${LANGS}; do - IUSE+=" l10n_${l}" -done -unset l - -RDEPEND=" - virtual/opengl - fltk? ( x11-libs/fltk:1 ) - gif? ( media-libs/giflib ) - glut? ( media-libs/freeglut ) - gsl? ( >=sci-libs/gsl-2 ) - hdf? ( sci-libs/hdf ) - hdf5? ( >=sci-libs/hdf5-1.8[mpi=] ) - jpeg? ( virtual/jpeg:0 ) - octave? ( >=sci-mathematics/octave-3.4.0 ) - openmp? ( sys-cluster/openmpi ) - pdf? ( media-libs/libharu ) - png? ( media-libs/libpng:0 ) - qt5? ( - dev-qt/qtcore:5 - dev-qt/qtgui:5 - dev-qt/qtprintsupport:5 - dev-qt/qtwidgets:5 - ) - wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] ) - zlib? ( sys-libs/zlib )" - -DEPEND="${RDEPEND} - doc? ( app-text/texi2html virtual/texi2dvi ) - octave? ( dev-lang/swig )" - -REQUIRED_USE=" - mpi? ( hdf5 ) - openmp? ( !threads ) - png? ( zlib ) - pdf? ( png )" - -PATCHES=( - "${FILESDIR}"/${P}-mutex.patch -) - -pkg_setup() { - use mpi && export CC=mpicc CXX=mpicxx -} - -src_unpack() { - default - if ! [[ -d "${S}"/fonts ]]; then - mkdir "${S}"/fonts || die - fi - cd "${S}"/fonts || die - unpack STIX_font.tgz -} - -src_prepare() { - # fix for location of hdf headers - sed -i -e 's:hdf/::g' src/data_io.cpp || die - # bored of reporting bad libdir upstream - sed -i \ - -e '/DESTINATION/s:lib$:lib${LIB_SUFFIX}:g' \ - {src,widgets}/CMakeLists.txt || die - echo "" > lang/install.m || die - # fix desktop file - sed -i -e 's/.png//' udav/udav.desktop || die - # prevent sandbox violation - sed -i -e 's/update-mime-database/true/' udav/CMakeLists.txt || die - sed -i -e 's/update-desktop-database/true/' udav/CMakeLists.txt || die - - use wxwidgets && need-wxwidgets unicode - cmake-utils_src_prepare -} - -src_configure() { - local mycmakeargs=() - if use hdf; then - mycmakeargs+=( - -DHDF4_INCLUDE_DIR="${EPREFIX}/usr/include" - ) - fi - mycmakeargs+=( - # No clue about this option: - # option(enable-mgl2 "Use names 'libmgl2-*' instead of 'libmgl-*'") - -DMathGL_INSTALL_LIB_DIR="${EPREFIX}/usr/$(get_libdir)" - -Denable-all-docs=$(usex doc) - -Denable-fltk=$(usex fltk) - -Denable-gif=$(usex gif) - -Denable-glut=$(usex glut) - -Denable-gsl=$(usex gsl) - -Denable-hdf4=$(usex hdf) - -Denable-hdf5=$(usex hdf5) - -Denable-jpeg=$(usex jpeg) - -Denable-mpi=$(usex mpi) - -Denable-octave=$(usex octave) - -Denable-opengl=$(usex opengl) - -Denable-openmp=$(usex openmp) - -Denable-pdf=$(usex pdf) - -Denable-png=$(usex png) - -Denable-qt4=OFF - -Denable-qt5=$(usex qt5) - -Denable-qt5asqt=$(usex qt5) - -Denable-pthread=$(usex threads) - -Denable-pthr-widget=$(usex threads) - -Denable-python=OFF - -Denable-wx=$(usex wxwidgets) - -Denable-zlib=$(usex zlib) - ) - cmake-utils_src_configure -} - -src_install() { - cmake-utils_src_install - dodoc README* *.txt AUTHORS - if ! use static-libs; then - rm "${ED}"/usr/$(get_libdir)/*.a || die - fi - if use qt5 ; then - local lang - insinto /usr/share/udav - for lang in ${LANGS} ; do - use l10n_${lang} && doins udav/udav_${lang}.qm - done - fi - if use octave ; then - insinto /usr/share/${PN}/octave - doins "${CMAKE_BUILD_DIR}"/lang/${PN}.tar.gz - fi -} - -pkg_postinst() { - if use octave; then - octave <<-EOF - pkg install ${EROOT}/usr/share/${PN}/octave/${PN}.tar.gz - EOF - fi -} - -pkg_prerm() { - if use octave; then - octave <<-EOF - pkg uninstall ${PN} - EOF - fi -} diff --git a/sci-libs/med/Manifest b/sci-libs/med/Manifest index f78545861851..b4e572fd5837 100644 --- a/sci-libs/med/Manifest +++ b/sci-libs/med/Manifest @@ -1,11 +1,5 @@ -AUX med-3.3.1-cmake-fortran.patch 588 BLAKE2B 7fbd1619692702edb395402d30ee5ae7b44a801be010547a89ac777db7e86a11975f170eb1713e190b367bf5c5c3bf156dbf3522d263fe480387a7b40af572c3 SHA512 5c23d7afc8aad0c91b96d10953fe4c39cd079e798f0cbc5efdd9f5beb3967af1582f1c47f53d8be8a291222194f05205f06d19b1a3c3192fd4cce778052846b1 -AUX med-3.3.1-disable-python-compile.patch 1242 BLAKE2B 5c0a500376665cea4429820b3c41eac1d8bf25b1a172a236327e74768891ca1ec7ed143e0d7c803eac5194a6b762538731c068aca53cc5f2b8071d9b0ce08b57 SHA512 29dd13933412b19a4bb003d2337cfd3d35bedff430325809947d41b276690a3413976b39487e4577ad74a6c6ca1c611e63ee09873f0ea2acae1a21475a6bb2e5 -AUX med-4.0.0-cmakelist.patch 2421 BLAKE2B 38991513aabbb8237a8b0d9456d9bb76f38cffecff9b1b4c906c0f9d17abd6c02ec150420403d8c1b36310b871f5354e100d1038d5620f6ba8719074e0ccd665 SHA512 405669dedc95b3776a2f4f6d64f8a608c914adb7d0666690f1f8b4a0598d6d85c7398622f50c50ead0295ee965fa993c36eb9e4217985079b528714682ea8b5d -AUX med-4.0.0-installdoc.patch 1045 BLAKE2B ddc44d986743a4bf1fa59ab20d34835117f2213283ad13ce1e8e16358b87fe64888facb2f32da76a025cc283a5d942554700cc8816c25cb6f0eeaa54970f1f9a SHA512 486eb41af086d2dc92463aa8f64f074f70a39920b4954e4c272bc6b92c960efe198255975b7c594ff801be43e9eb6a31d007f55451901107db90ed6b3389eee6 AUX med-4.1.0-0001-Gentoo-specific-Adjust-install-path-for-build-dir.patch 1412 BLAKE2B 50602ca4a76ba4d15072d6bb96f9ce8576ac819c36b2a2a30268b506e1f453966e2846ea81ab8919d59c47e5f2ca41bc433b9fddee13797834f3a0c11a8fbb0f SHA512 cf810b8f8f2466d0b2bbf6fae1167faf57ce0b01812630ab165401432fee474b6ce80b50e122c36c61f0c347f89a1975cb91ac7ea3939eee2c15bf9e1a1dcdbe AUX med-4.1.0-0002-Re-add-option-for-building-Fortran-library.patch 1061 BLAKE2B 1856be8c2189e5d7541f041182e48315d686cadfeb409872eee25a90ff657cf1b6a5c76a4632a6d3d12af29b2f7ee67201d67c40cbc98927702ce1c905aa2509 SHA512 c40235bed175f84615115c899fad9f78a03205a7192bdf68f1b79a1711a7a15c58145102fce9850898f463d6d7ad16bbb89416f689d4013364955036628e7263 -DIST med-4.0.0.tar.gz 47849098 BLAKE2B 0bc6710f7b5156e09962e3125349573989429e614a203f649843f00dea06217040ebee70e481eed9c0dd304cb7d167efcd216c3600f6954a74f262cc845fff63 SHA512 2840437010481fc5f12a56e3282f8ca5e94df541899e2b511756702f86d0f87dbf2f6e086d8e591e2bd370d8f4bab8089e7f7f939fea16354a23e2b5a4d96cd7 DIST med-4.1.0.tar.gz 50375039 BLAKE2B 514ca19baf15e349ecbce870b318b37c51bfb57ac9b03c2b2c1b28836fec7fcf2dce573b9ea155f358d5e0bcee120c12a31598cd4f1e44837eca787553bb70d4 SHA512 94d07663c2f6a3cd497f54b480c3d742476d2a25172feb567980c9e75d49f4661aa2c6aaf570470938265997154e348bc1608065b86d42afda52d4e6361fedf8 -EBUILD med-4.0.0-r2.ebuild 3493 BLAKE2B 119f7121365e2467dd99d77aa39eefe69356b78a09a4d7926d5386520d0150612ad0cdc1c6e462f41bd3b4eb8367169262c4d5d15e901f1b6c041b8b435a0fc5 SHA512 b613150305bd7b95312b05addfbb140d61f5d19a860798379f26e5690fa624fcdc5186f6f9493835dd8b32a694712a3d6a12c55e2fb8816ada8850078408a706 EBUILD med-4.1.0.ebuild 3231 BLAKE2B 336bfbfba073d30dd9ef1efb0b00ef5cdc90f53ab3de07002219f3750d433c8aabccdd02c439ef262058cfc3ce9676562e808863ce09af741671b2a107953c73 SHA512 d45cc92458137499e6f735fb4f440d5f823710dd0167c71302dbdea59e0d1938e009fe25d23d60f0aef9eb5df785f9288ea6faedcf30f65c31cda71aa65294c1 MISC metadata.xml 597 BLAKE2B 4a83011ca9dd5e87df8d4940cb55bc0c6e374eb6be638373c5ee574033340d2ee68186531ff0825726847d4545030739885dd774ecea3291fa60740678e6002c SHA512 f2f194d0c776f646ec4dfe45a82d98670b72ab350fcca731b755d3dcc0a3ac379f54908595a0bc163fe0cac0f1d1da157e2cc00ba8957f18f27d27528074c797 diff --git a/sci-libs/med/files/med-3.3.1-cmake-fortran.patch b/sci-libs/med/files/med-3.3.1-cmake-fortran.patch deleted file mode 100644 index 1f475d584843..000000000000 --- a/sci-libs/med/files/med-3.3.1-cmake-fortran.patch +++ /dev/null @@ -1,21 +0,0 @@ -Make cmake properly disable fortran upon user requirments - ---- ./CMakeLists.txt.orig 2016-07-01 15:28:57.139304608 +0300 -+++ ./CMakeLists.txt 2016-07-01 15:34:22.295899455 +0300 -@@ -8,10 +8,13 @@ - - INCLUDE(CheckLanguage) - CHECK_LANGUAGE(Fortran) --IF(CMAKE_Fortran_COMPILER) -+OPTION (MEDFILE_BUILD_FORTRAN "Build fortran library" ON) -+IF(MEDFILE_BUILD_FORTRAN) - ENABLE_LANGUAGE(Fortran) -+ IF(NOT CMAKE_Fortran_COMPILER) -+ MESSAGE(FATAL_EROOR "Fortran support was requested but not found") -+ ENDIF() - ELSE() -- MESSAGE(STATUS "No Fortran support") - ENDIF() - - ## Version number - diff --git a/sci-libs/med/files/med-3.3.1-disable-python-compile.patch b/sci-libs/med/files/med-3.3.1-disable-python-compile.patch deleted file mode 100644 index 642b404ba880..000000000000 --- a/sci-libs/med/files/med-3.3.1-disable-python-compile.patch +++ /dev/null @@ -1,17 +0,0 @@ ---- ./config/cmake_files/medMacros.cmake 2016-10-24 09:55:35.000000000 +0200 -+++ ./config/cmake_files/medMacros.cmake.new 2018-01-24 10:50:15.146953227 +0100 -@@ -412,9 +412,9 @@ - FOREACH(input ${PYFILE2COMPINST}) - GET_FILENAME_COMPONENT(inputname ${input} NAME) - INSTALL(FILES ${input} DESTINATION ${CMAKE_INSTALL_PREFIX}/${PYFILELOC}) -- INSTALL(CODE "MESSAGE(STATUS \"py compiling ${CMAKE_INSTALL_PREFIX}/${PYFILELOC}/${inputname}\")") -- INSTALL(CODE "SET(CMD \"import py_compile ; py_compile.compile('${CMAKE_INSTALL_PREFIX}/${PYFILELOC}/${inputname}')\")") -- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${PYTHON_EXECUTABLE} -c \"\${CMD}\")") -- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${PYTHON_EXECUTABLE} -O -c \"\${CMD}\")") -+ #INSTALL(CODE "MESSAGE(STATUS \"py compiling ${CMAKE_INSTALL_PREFIX}/${PYFILELOC}/${inputname}\")") -+ #INSTALL(CODE "SET(CMD \"import py_compile ; py_compile.compile('${CMAKE_INSTALL_PREFIX}/${PYFILELOC}/${inputname}')\")") -+ #INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${PYTHON_EXECUTABLE} -c \"\${CMD}\")") -+ #INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${PYTHON_EXECUTABLE} -O -c \"\${CMD}\")") - ENDFOREACH(input ${PYFILE2COMPINST}) - ENDMACRO(INSTALL_AND_COMPILE_PYTHON_FILE PYFILE2COMPINST PYFILELOC) - diff --git a/sci-libs/med/files/med-4.0.0-cmakelist.patch b/sci-libs/med/files/med-4.0.0-cmakelist.patch deleted file mode 100644 index 4c023cf24b31..000000000000 --- a/sci-libs/med/files/med-4.0.0-cmakelist.patch +++ /dev/null @@ -1,59 +0,0 @@ ---- a/src/CMakeLists.txt 2018-07-28 16:37:01.180598992 +0200 -+++ a/src/CMakeLists.txt.new 2018-07-28 17:14:49.147775461 +0200 -@@ -1,7 +1,3 @@ --INCLUDE_DIRECTORIES( -- ${HDF5_INCLUDE_DIRS} -- ${MPI_INCLUDE_DIRS}) -- - # On Win platform, we need to make sure symbols are properly exported in - # the intermediary OBJECT targes built in the sub-directories: - # The definition "-D<target>_EXPORTS" is normally added automatically by CMake -@@ -19,6 +15,12 @@ - INCLUDE_DIRECTORIES(${PROJECT_BINARY_DIR}/include - ${PROJECT_SOURCE_DIR}/include) - -+# these includes must go after project ones to avoid masking by -+# previous versions already installed -+INCLUDE_DIRECTORIES( -+ ${HDF5_INCLUDE_DIRS} -+ ${MPI_INCLUDE_DIRS}) -+ - # Get pure C intermediary targets: - ADD_SUBDIRECTORY(hdfi) - ADD_SUBDIRECTORY(ci) ---- a/tools/mdump/CMakeLists.txt 2018-07-29 09:24:35.714930029 +0200 -+++ a/tools/mdump/CMakeLists.txt.new 2018-07-29 09:58:48.667089767 +0200 -@@ -33,6 +33,6 @@ - CONFIGURE_FILE(xmdump3.in ${PROJECT_BINARY_DIR}/xmdump3 @ONLY) - - INSTALL(PROGRAMS ${PROJECT_BINARY_DIR}/xmdump2 ${PROJECT_BINARY_DIR}/xmdump3 DESTINATION bin) --INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink mdump3 mdump WORKING_DIRECTORY ${DESTDIR}${CMAKE_INSTALL_PREFIX}/bin)") --INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink xmdump3 xmdump WORKING_DIRECTORY ${DESTDIR}${CMAKE_INSTALL_PREFIX}/bin)") -+INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink mdump3 mdump WORKING_DIRECTORY \"\$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/bin\")") -+INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink xmdump3 xmdump WORKING_DIRECTORY \"\$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/bin\")") - ---- a/src/2.3.6/CMakeLists.txt 2018-07-30 22:45:56.205079148 +0200 -+++ a/src/2.3.6/CMakeLists.txt.new 2018-07-30 22:49:43.520096835 +0200 -@@ -1,8 +1,3 @@ --INCLUDE_DIRECTORIES( -- ${HDF5_INCLUDE_DIRS} -- ${MPI_INCLUDE_DIRS} --) -- - SET(med236_SOURCES MEDaffiche.c) - - # Definitions -@@ -13,6 +8,13 @@ - "${PROJECT_BINARY_DIR}/include/2.3.6" - "${PROJECT_SOURCE_DIR}/include/2.3.6") - -+# these includes must go after project ones to avoid masking by -+# previous versions already installed -+INCLUDE_DIRECTORIES( -+ ${HDF5_INCLUDE_DIRS} -+ ${MPI_INCLUDE_DIRS} -+) -+ - # Build intermediate targets _cfi236, _hdfi236, _misc236 and _ci236 - # (and their static counterpart): - ADD_SUBDIRECTORY(cfi) diff --git a/sci-libs/med/files/med-4.0.0-installdoc.patch b/sci-libs/med/files/med-4.0.0-installdoc.patch deleted file mode 100644 index 2d9361c42657..000000000000 --- a/sci-libs/med/files/med-4.0.0-installdoc.patch +++ /dev/null @@ -1,15 +0,0 @@ ---- ./CMakeLists.txt 2019-02-26 11:59:15.276962751 +0100 -+++ ./CMakeLists.txt.new 2019-02-26 11:59:26.660962707 +0100 -@@ -137,9 +137,10 @@ - ENDIF() - - ## Installation of the doc -+set(MEDFILE_DOC_DIRECTORY ${CMAKE_INSTALL_PREFIX}/share/doc/med-fichier-${MED_STR_VERSION} CACHE PATH "install dir for documentation") - IF(MEDFILE_INSTALL_DOC OR MEDFILE_BUILD_DOC) -- INSTALL(DIRECTORY doc/html.dox/ DESTINATION ${CMAKE_INSTALL_PREFIX}/share/doc/med-fichier-${MED_STR_VERSION} REGEX "Makefile*" EXCLUDE PATTERN "*.am" EXCLUDE) -- INSTALL(DIRECTORY doc/gif doc/jpg doc/png DESTINATION ${CMAKE_INSTALL_PREFIX}/share/doc/med-fichier-${MED_STR_VERSION} FILES_MATCHING PATTERN "*.gif" PATTERN "*.jpg" PATTERN "*.svg" PATTERN "*.png") -+ INSTALL(DIRECTORY doc/html.dox/ DESTINATION ${MEDFILE_DOC_DIRECTORY} REGEX "Makefile*" EXCLUDE PATTERN "*.am" EXCLUDE) -+ INSTALL(DIRECTORY doc/gif doc/jpg doc/png DESTINATION ${MEDFILE_DOC_DIRECTORY} FILES_MATCHING PATTERN "*.gif" PATTERN "*.jpg" PATTERN "*.svg" PATTERN "*.png") - ENDIF() - - ####################### diff --git a/sci-libs/med/med-4.0.0-r2.ebuild b/sci-libs/med/med-4.0.0-r2.ebuild deleted file mode 100644 index 5ab14261fa8a..000000000000 --- a/sci-libs/med/med-4.0.0-r2.ebuild +++ /dev/null @@ -1,117 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -# EAPI=7 uses ninja generator by default but it's incompatible with USE=fortran -# https://github.com/Kitware/ninja/tree/features-for-fortran#readme -CMAKE_MAKEFILE_GENERATOR=emake - -FORTRAN_NEEDED=fortran - -# NOTE:The build for multiple python versions should be possible but -# complicated for the build system -PYTHON_COMPAT=( python3_{6,7} ) - -inherit cmake fortran-2 python-single-r1 - -DESCRIPTION="A library to store and exchange meshed data or computation results" -HOMEPAGE="https://www.salome-platform.org/user-section/about/med" -SRC_URI="https://files.salome-platform.org/Salome/other/${P}.tar.gz" - -LICENSE="LGPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="doc fortran mpi python test" - -REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" - -RESTRICT="!test? ( test ) python? ( test )" - -# dev-lang/tk is needed for wish-based xmdump utility -RDEPEND=" - !sci-libs/libmed - dev-lang/tk:0= - >=sci-libs/hdf5-1.10.2:=[fortran?,mpi?] - mpi? ( virtual/mpi[fortran=] ) - python? ( ${PYTHON_DEPS} ) -" -DEPEND="${RDEPEND}" -BDEPEND="python? ( >=dev-lang/swig-3.0.8 )" - -PATCHES=( - "${FILESDIR}/${PN}-3.3.1-cmake-fortran.patch" - "${FILESDIR}/${PN}-3.3.1-disable-python-compile.patch" # managed by function of python eclass - "${FILESDIR}/${P}-cmakelist.patch" - "${FILESDIR}/${P}-installdoc.patch" -) - -DOCS=( AUTHORS ChangeLog NEWS README TODO ) - -pkg_setup() { - use python && python-single-r1_pkg_setup - use fortran && fortran-2_pkg_setup -} - -src_prepare() { - if use python; then - # fixes for correct libdir name - local pysite=$(python_get_sitedir) - pysite="${pysite##/usr/}" - sed \ - -e 's@SET(_install_dir lib/python${PYTHON_VERSION_MAJOR}.${PYTHON_VERSION_MINOR}/site-packages/med)@SET(_install_dir '${pysite}'/med)@' \ - -i ./python/CMakeLists.txt || die "sed on ./python/CMakeLists.txt failed" - fi - for cm in ./src/CMakeLists.txt ./tools/medimport/CMakeLists.txt - do - sed -i -e "s@INSTALL(TARGETS \(.*\) DESTINATION lib)@INSTALL(TARGETS \1 DESTINATION $(get_libdir))@" \ - "${cm}" || die "sed on ${cm} failed" - done - - cmake_src_prepare -} - -src_configure() { - local mycmakeargs=( - # as indicated in the CMakeLists.txt, the shipped documentation is generated by a custom doxygen, - # so let's avoid rebuilding it because it will be different - -DMEDFILE_BUILD_DOC=OFF - -DMEDFILE_BUILD_FORTRAN=$(usex fortran) - -DMEDFILE_BUILD_PYTHON=$(usex python) - -DMEDFILE_BUILD_SHARED_LIBS=ON - -DMEDFILE_BUILD_STATIC_LIBS=OFF - -DMEDFILE_BUILD_TESTS=$(usex test) - -DMEDFILE_DOC_DIRECTORY="${EPREFIX}"/usr/share/doc/${PF}/html # custom var created by patches - -DMEDFILE_INSTALL_DOC=$(usex doc) - -DMEDFILE_USE_MPI=$(usex mpi) - ) - cmake_src_configure -} - -src_install() { - cmake_src_install - - # we don't need old 2.3.6 include files - rm -r "${ED}"/usr/include/2.3.6 || die "failed to delete obsolete include dir" - - # the optimization done in CMakeLists.txt has been disabled so - # we need to do it manually - use python && python_optimize - - # Prevent test executables being installed - if use test; then - rm -r "${ED}"/usr/bin/testc || die "failed to delete C test executables" - if use fortran; then - rm -r "${ED}"/usr/bin/testf || die "failed to delete fortran test executables" - fi - if use python; then - rm -r "${ED}"/usr/bin/testpy || die "failed to delete python test executables" - fi - fi -} - -src_test() { - # override parallel mode only for tests - local myctestargs=( "-j 1" ) - cmake_src_test -} diff --git a/sci-libs/mpir/Manifest b/sci-libs/mpir/Manifest index e497a875f58a..055c12201bb7 100644 --- a/sci-libs/mpir/Manifest +++ b/sci-libs/mpir/Manifest @@ -3,11 +3,8 @@ AUX mpir-2.5.1-automake-1.12.patch 3388 BLAKE2B 13d21cd476ea303676f8dd1f0f568408 AUX mpir-2.6.0-gcc48.patch 467 BLAKE2B 3976254e3df4790cedc277764591dd1cecb764d868b48f4f419a41eead089f3b85ddc7dcf56ea56013a727efb682b677747443e770520243c52a100d0c3cc20b SHA512 28d88aa3ac0c9ccdc849e3ca63eb7768efbbcd77947a1d3befd3cb723eae0b3dda0ff8237f2fcccc9c161026e2a3a05d18ba848d55e51002ea31ab9fb291ed6f AUX mpir-2.6.0-yasm.patch 1897 BLAKE2B 146de2bc88d9e65da73c1f9fca3f4b3cd70dc88951a4468001b8f91eec207ecba4a5a60a00260f1c8b5018769ec84b1d21c18bd70806b730a3dfa351b9262698 SHA512 0ac3f67f9f8e340e02e4e33e84a482388c45cb59c0d62adf316bc94d1450144b0afcaa639ab9f18fe3a5bc74bb6c2730fdf910b036b4a79272aa28276256ec5c AUX mpir-2.7.2-ABI-multilib.patch 3902 BLAKE2B 915c6dabaf88115869eb34de98b6739fc552aeaf3df0293ef6465e9af6cdf2de6cf1c3e9bc39dd87c0d84a131e97b4017efe311ce3fd4a68a8ff00acafbe94d3 SHA512 81dd03d85dde94fedd4777ae1e5075420de0886675a4f8fba065cfba46f8bf0a3caf15c1efecbed4125ff27bad9c5b39e5eb05719aeabc72b52723f973d59eeb -AUX mpir-2.7.2-sed-backport.patch 704 BLAKE2B a4e2083008ddb0acb2cd81886e53fc1e9e7b230fc0b1595f51a8aceb99adaa5752b0a56b826cebbbd33d7087056ded0011cd95aa5a258bc494ea4ea55bd4f918 SHA512 420f1835c184335445ecd9f57989bd6fdb5c3f65fc78ee52881a272b6a1981d56a6c58047212ebb387e3fe36251a556a466c16479e13e52325fd3db3d809c152 DIST mpir-2.6.0.tar.lzma 2472231 BLAKE2B ec768fb78317220d677fac24609fdc4db1315e3c5594d7e098a0f502c38eb8dcf69bac5317c3b7afd629c089504856bb686aa4de65ad54b4f728325e100db44f SHA512 e2608beeb72651c9b2e47f8fb2bcf672f8c74e2cd622e17cd19b12100b66e929ee31d102d2901816379b23aee1a3ea3a854e3e10ebffe2a6e4772748858f911d -DIST mpir-2.7.2.tar.bz2 3771429 BLAKE2B c3431bcb84207fdb1bc0242fe56b7c2d45643e8c21c4b215162f824bed3a395972f734907f966bc14c58a28d30bb35f441b16b2762a9c8ef9c02d164f804bc82 SHA512 8436a0123201f9e30130ea340331c5a6445dddb58ce1f6c6a3a8303c310ac5b3c279c83b5c520a757cba82c2b14e92da44583e0eec287090cf69cbb29d516a9c DIST mpir-3.0.0.tar.bz2 2572041 BLAKE2B f564944dd76586ca6e50c39f1199468b905a3db7bbb8b2ee6cf3dcdfb00757d7eefc57e010d5cfc3d6db7ba2676e36f7980365e85c87827b4901ec4e80349915 SHA512 c735105db8b86db739fd915bf16064e6bc82d0565ad8858059e4e93f62c9d72d9a1c02a5ca9859b184346a8dc64fa714d4d61404cff1e405dc548cbd54d0a88e EBUILD mpir-2.6.0-r2.ebuild 1722 BLAKE2B 0d356fc5762aa25d8dff40d72ad031201d6a1c01fd10107f815ae2cb4f6abbb5b2806b9097f87f916ea892f246d0ccf9e0f00cfc88b65f7b1d8ab4eab775e0ad SHA512 43d1bc825f15e4386a163860ff62917ccdffc7cc3d1ed4cc767e101ca78f86a6212fa618b92439d7f308108c4e71bb55d2a2cb7738d8b275b6714e6ac3e21b6c -EBUILD mpir-2.7.2.ebuild 1719 BLAKE2B e4c9c8a697fb658a76eecdc651c119729a9ec8ecf30d54f054e8f5c61e7a873824e3f566cc5afa2509b96c33eadebbd79bc94aa074e144b562d2fe61c841d6cb SHA512 0cabe5c4e5c1df7b8ecd54b4ba87caff0b934d1805fcbb32b68ba393ba5684fac4314ed277e39286697295f94e79900fc809586b96131d0d03c264873dfd0c07 EBUILD mpir-3.0.0.ebuild 1861 BLAKE2B 96176019bfcf1bd0aa11a9c830b53c2d2f1da620adc6503fc4a7ada7cc776a5d287d20514f7f58975f09bb8964aa8319b1342955358aee5bf65d1a6f5b7cff58 SHA512 b17b67253c8f5c43ee9627848ec0604b3d0cce93a50204966ef65d53df7ad1184a879a24ad66c99d407bf7070333e1d0f4b4ee4494db9ee98dd0f79ba23702b1 MISC metadata.xml 792 BLAKE2B 9c0bea642d53a6afb0abeecefcc940c012b5cecf8c6e98fdf69eb718f63ea8e7c7f913fa1cd8360240b5f355e3742a5ccae00166690cf8a83226ad636342d279 SHA512 811f781a961982955ba036f719ec5cce3def93190fb786ef3c3a60f1b54f9b7638d8083cf0f273174002da7d358d25e8764de591d7b587b41198c48c52908fcc diff --git a/sci-libs/mpir/files/mpir-2.7.2-sed-backport.patch b/sci-libs/mpir/files/mpir-2.7.2-sed-backport.patch deleted file mode 100644 index 897642909ca0..000000000000 --- a/sci-libs/mpir/files/mpir-2.7.2-sed-backport.patch +++ /dev/null @@ -1,16 +0,0 @@ - configure.ac | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/configure.ac b/configure.ac -index a3821c5..15fa93d 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -2595,7 +2595,7 @@ for tmp_fn in $gmp_mpn_functions; do - sed -n 's/^[ ]*MULFUNC_PROLOGUE(\(.*\))/\1/p' $tmp_file ; - sed -n 's/^[ ]*PROLOGUE(\([^,]*\).*)/\1/p' $tmp_file ; - sed -n 's/^;[ ]*PROLOGUE(\([^,]*\).*)/\1/p' $tmp_file ; -- sed -n 's/[^G]*GLOBAL_FUNC[:space:]*\(.*\)/\1/p' $tmp_file ; -+ sed -n 's/[^G]*GLOBAL_FUNC[[:space:]]*\(.*\)/\1/p' $tmp_file ; - `] - for gmp_tmp in $gmp_ep; do - AC_DEFINE_UNQUOTED(HAVE_NATIVE_$gmp_tmp) diff --git a/sci-libs/mpir/mpir-2.7.2.ebuild b/sci-libs/mpir/mpir-2.7.2.ebuild deleted file mode 100644 index f3e1deeb567d..000000000000 --- a/sci-libs/mpir/mpir-2.7.2.ebuild +++ /dev/null @@ -1,74 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit autotools toolchain-funcs - -DESCRIPTION="Library for arbitrary precision integer arithmetic (fork of gmp)" -HOMEPAGE="http://www.mpir.org/" -SRC_URI="http://www.mpir.org/${P}.tar.bz2" - -LICENSE="LGPL-3" -SLOT="0/16" -KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux" -IUSE="+cxx cpudetection static-libs" - -DEPEND=" - x86? ( dev-lang/yasm ) - amd64? ( dev-lang/yasm ) -" -RDEPEND="" - -PATCHES=( - "${FILESDIR}"/${P}-ABI-multilib.patch - "${FILESDIR}"/${P}-sed-backport.patch -) - -src_prepare() { - tc-export CC - - default - - # In the same way there was QA regarding executable stacks - # with GMP we have some here as well. We cannot apply the - # GMP solution as yasm is used, at least on x86/amd64. - # Furthermore we are able to patch config.ac. - ebegin "Patching assembler files to remove executable sections" - local i - for i in $(find . -type f -name '*.asm') ; do - cat >> $i <<-EOF - #if defined(__linux__) && defined(__ELF__) - .section .note.GNU-stack,"",%progbits - #endif - EOF - done - - for i in $(find . -type f -name '*.as') ; do - cat >> $i <<-EOF - %ifidn __OUTPUT_FORMAT__,elf - section .note.GNU-stack noalloc noexec nowrite progbits - %endif - EOF - done - eend - eautoreconf -} - -src_configure() { - # beware that cpudetection aka fat binaries is x86/amd64 only. - # Place mpir in profiles/arch/$arch/package.use.mask - # when making it available on $arch. - myeconfargs+=( - --with-system-yasm - $(use_enable cxx) - $(use_enable cpudetection fat) - $(use_enable static-libs static) - ) - econf ${myeconfargs[@]} -} - -src_install() { - default - rm "${ED}"/usr/$(get_libdir)/*la || die -} diff --git a/sci-libs/mumps/Manifest b/sci-libs/mumps/Manifest index 1ad193484298..11ed5c511724 100644 --- a/sci-libs/mumps/Manifest +++ b/sci-libs/mumps/Manifest @@ -1,5 +1,3 @@ -DIST MUMPS_5.1.2.tar.gz 3351215 BLAKE2B 1c77c2a217c101245a9a96a59be6b9bfd67ceffa603d807b5a7173026c5c33e2c4de78c14833d7b7f0a90130b9ebc0ac9c7d4ebfbf881d0bd2210a542887c239 SHA512 38a63b14a8df835be68b5fa310b39aa1815799220d56c176e4005797800959e9e08c9a6bf11d308ab82ea40b6f34d36072cebe7c1de39e0c314eb138b93f1b74 DIST MUMPS_5.3.5.tar.gz 3940501 BLAKE2B f1767483bb23744a2c5ed11b0823c5b023377d5212abbe29a177cce5b5e51e6f2f391d7caa17022646e36c9e4b4fb4af80b03ac6cf8e89f37502ed960138bbbe SHA512 6e3bb081f38af8540ada7b4fb54c6e766739c854e2a3dd253e3e012eee05dae30064b1b4a8d7493f10691725aba4cc9e80544b0fe5b71670cb0b2726ccfc4439 -EBUILD mumps-5.1.2-r1.ebuild 5662 BLAKE2B 3d02525978545228ef97ccccbd18bb20e73747391f2b8fb0148eaf24d7802f03793d1246b9bbd65a07820fc33fe28e82c5b50e612022d9912e5edadad95db772 SHA512 c3dda6400a3ca6ecae6043a6abb1206860c9ca76331d3dc35073161258591e693a8423f68908066b750c619fa9f66d2899dc5800c5fce20fd26e633e68c4a280 EBUILD mumps-5.3.5.ebuild 5733 BLAKE2B b176d7fc87a590aa129a3cff471b3bbc07753263abcc31d2a7a1cc061215594cdc94199d4f8ee5a1bae76e476c416362f762a5c827d5bacd5183d94e13455859 SHA512 5ac75e3969af83cf10064763c70f8a1d02f9d62c69f7bdff4de8d7994c592c4ee1a3665622e574a1b6d5b2f48d79da1493a59e9afbdc4a9cfda8ff9b3e8f59fe MISC metadata.xml 864 BLAKE2B 78db103b861071cbad317a65db2bb1c7eafc6c3936728cf3854ea05e92210abbf552e01dcbc974dc5238fc1a432ad7ff48fab3d662ea6081ff70fd86263ac11b SHA512 c285d7ed4bd26bb603f40f9d5e4e7262aea8a2679d14f65a4f8959a9bf2c622310422790e6221708fa227cd2c3bb2f4ba140eb5f23acc71b3f1ca20c04c4711a diff --git a/sci-libs/mumps/mumps-5.1.2-r1.ebuild b/sci-libs/mumps/mumps-5.1.2-r1.ebuild deleted file mode 100644 index de59b9307470..000000000000 --- a/sci-libs/mumps/mumps-5.1.2-r1.ebuild +++ /dev/null @@ -1,202 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit fortran-2 toolchain-funcs - -MYP=MUMPS_${PV} - -DESCRIPTION="MUltifrontal Massively Parallel sparse direct matrix Solver" -HOMEPAGE="http://mumps.enseeiht.fr/" -SRC_URI="http://mumps.enseeiht.fr/${MYP}.tar.gz" - -LICENSE="public-domain" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples metis mpi +scotch static-libs" - -RDEPEND=" - virtual/blas - metis? ( - || ( >=sci-libs/metis-5 >=sci-libs/parmetis-4 ) - mpi? ( >=sci-libs/parmetis-4 ) - ) - mpi? ( sci-libs/scalapack ) - scotch? ( >=sci-libs/scotch-6.0.1:=[mpi=] ) -" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -S="${WORKDIR}/${MYP}" - -get_version_component_count() { - local cnt=( $(ver_rs 1- ' ') ) - echo ${#cnt[@]} -} - -static_to_shared() { - local libstatic=${1} - shift - local libname=$(basename ${libstatic%.a}) - local soname=${libname}$(get_libname $(ver_cut 1-2)) - local libdir=$(dirname ${libstatic}) - - einfo "Making ${soname} from ${libstatic}" - if [[ ${CHOST} == *-darwin* ]] ; then - ${LINK:-$(tc-getCC)} ${LDFLAGS} \ - -dynamiclib -install_name "${EPREFIX}"/usr/lib/"${soname}" \ - -Wl,-all_load -Wl,${libstatic} \ - "$@" -o ${libdir}/${soname} || die "${soname} failed" - else - ${LINK:-$(tc-getCC)} ${LDFLAGS} \ - -shared -Wl,-soname=${soname} \ - -Wl,--whole-archive ${libstatic} -Wl,--no-whole-archive \ - "$@" -o ${libdir}/${soname} || die "${soname} failed" - - if [[ $(get_version_component_count) -ge 1 ]] ; then - ln -s ${soname} ${libdir}/${libname}$(get_libname $(ver_cut 1)) || die - fi - - ln -s ${soname} ${libdir}/${libname}$(get_libname) || die - fi -} - -src_prepare() { - sed -e "s:^\(CC\s*=\).*:\1$(tc-getCC):" \ - -e "s:^\(FC\s*=\).*:\1$(tc-getFC):" \ - -e "s:^\(FL\s*=\).*:\1$(tc-getFC):" \ - -e "s:^\(AR\s*=\).*:\1$(tc-getAR) cr :" \ - -e "s:^\(RANLIB\s*=\).*:\1$(tc-getRANLIB):" \ - -e "s:^\(LIBBLAS\s*=\).*:\1$($(tc-getPKG_CONFIG) --libs blas):" \ - -e "s:^\(INCPAR\s*=\).*:\1:" \ - -e 's:^\(LIBPAR\s*=\).*:\1$(SCALAP):' \ - -e "s:^\(OPTF\s*=\).*:\1${FFLAGS} -DALLOW_NON_INIT \$(PIC):" \ - -e "s:^\(OPTC\s*=\).*:\1${CFLAGS} \$(PIC):" \ - -e "s:^\(OPTL\s*=\).*:\1${LDFLAGS}:" \ - Make.inc/Makefile.inc.generic > Makefile.inc || die - # fixed a missing copy of libseq to libdir - - default -} - -src_configure() { - LIBADD="$($(tc-getPKG_CONFIG) --libs blas) -Llib -lpord" - local ord="-Dpord" - if use metis && use mpi; then - sed -i \ - -e "s:#\s*\(LMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --libs parmetis):" \ - -e "s:#\s*\(IMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --cflags parmetis):" \ - Makefile.inc || die - LIBADD="${LIBADD} $($(tc-getPKG_CONFIG) --libs parmetis)" - ord="${ord} -Dparmetis" - elif use metis; then - sed -i \ - -e "s:#\s*\(LMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --libs metis):" \ - -e "s:#\s*\(IMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --cflags metis):" \ - Makefile.inc || die - LIBADD="${LIBADD} $($(tc-getPKG_CONFIG) --libs metis)" - ord="${ord} -Dmetis" - fi - if use scotch && use mpi; then - sed -i \ - -e "s:#\s*\(LSCOTCH\s*=\).*:\1-lptesmumps -lptscotch -lptscotcherr:" \ - -e "s:#\s*\(ISCOTCH\s*=\).*:\1-I${ESYSROOT}/usr/include/scotch:" \ - Makefile.inc || die - LIBADD="${LIBADD} -lptesmumps -lptscotch -lptscotcherr" - ord="${ord} -Dptscotch" - elif use scotch; then - sed -i \ - -e "s:#\s*\(LSCOTCH\s*=\).*:\1-lesmumps -lscotch -lscotcherr:" \ - -e "s:#\s*\(ISCOTCH\s*=\).*:\1-I${ESYSROOT}/usr/include/scotch:" \ - Makefile.inc || die - LIBADD="${LIBADD} -lesmumps -lscotch -lscotcherr" - ord="${ord} -Dscotch" - fi - if use mpi; then - sed -i \ - -e "s:^\(CC\s*=\).*:\1mpicc:" \ - -e "s:^\(FC\s*=\).*:\1mpif90:" \ - -e "s:^\(FL\s*=\).*:\1mpif90:" \ - -e "s:^\(SCALAP\s*=\).*:\1$($(tc-getPKG_CONFIG) --libs scalapack):" \ - Makefile.inc || die - export LINK=mpif90 - LIBADD="${LIBADD} $($(tc-getPKG_CONFIG) --libs scalapack)" - else - sed -i \ - -e 's:-Llibseq:-L$(topdir)/libseq:' \ - -e 's:PAR):SEQ):g' \ - -e "s:^\(SCALAP\s*=\).*:\1:" \ - -e 's:^LIBSEQNEEDED =:LIBSEQNEEDED = libseqneeded:g' \ - Makefile.inc || die - export LINK="$(tc-getFC)" - fi - sed -i -e "s:^\s*\(ORDERINGSF\s*=\).*:\1 ${ord}:" Makefile.inc || die -} - -src_compile() { - # Workaround #462602 - export FAKEROOTKEY=1 - - # -j1 because of static archive race - emake -j1 alllib PIC="-fPIC" - if ! use mpi; then - #$(tc-getAR) crs lib/libmumps_common.a libseq/*.o || die - LIBADD+=" -Llibseq -lmpiseq" - static_to_shared libseq/libmpiseq.a - fi - - static_to_shared lib/libpord.a ${LIBADD} - static_to_shared lib/libmumps_common.a ${LIBADD} - - local i - for i in c d s z; do - static_to_shared lib/lib${i}mumps.a -Llib -lmumps_common ${LIBADD} - done - - if use static-libs; then - emake clean - emake -j1 alllib - fi -} - -src_test() { - emake all - - local dotest - if use mpi; then - dotest="mpirun -np 2" - else - export LD_LIBRARY_PATH="${S}/libseq:${LD_LIBRARY_PATH}" - fi - - cd examples - ${dotest} ./ssimpletest < input_simpletest_real || die - ${dotest} ./dsimpletest < input_simpletest_real || die - ${dotest} ./csimpletest < input_simpletest_cmplx || die - ${dotest} ./zsimpletest < input_simpletest_cmplx || die - einfo "The solutions should be close to (1,2,3,4,5)" - ${dotest} ./c_example || die - einfo "The solution should be close to (1,2)" - emake clean -} - -src_install() { - dolib.so lib/lib*$(get_libname)* - use static-libs && dolib.a lib/lib*.a - insinto /usr - - doins -r include - if ! use mpi; then - dolib.so libseq/lib*$(get_libname)* - insinto /usr/include/mpiseq - doins libseq/*.h - use static-libs && dolib.a libseq/libmpiseq.a - fi - - dodoc README ChangeLog VERSION - use doc && dodoc doc/*.pdf - if use examples; then - dodoc -r examples - fi -} diff --git a/sci-libs/netcdf-fortran/Manifest b/sci-libs/netcdf-fortran/Manifest index a77b350364bb..51f6d907abc9 100644 --- a/sci-libs/netcdf-fortran/Manifest +++ b/sci-libs/netcdf-fortran/Manifest @@ -1,7 +1,3 @@ -DIST netcdf-fortran-4.2.tar.gz 2479928 BLAKE2B 4816bfb20d3d0ad0dd1ead756b5b5d296b9e44ba78b5a82880840d8004c56bec95d7407db216f59b14ca6ec41ec953470d8fba369cb499d1ecc46aad7d1d43dd SHA512 af5d489df7b3ff5c3208115af4abdbf12d74d6bc0b9e3c729cfd24b55efafc3766de21c0f9957e037c25726637e9129a1f7009676e81d7e59650fec56d6e776e -DIST netcdf-fortran-4.4.2.tar.gz 1246344 BLAKE2B 9d0fffde97b39df0de795ba046fb3c02d75656829fefd162e27b7464b0655d75e9b91fec305f1ee7615680c0e7651f0623c836766238b46359ecd269a2e23124 SHA512 c3f025c0f5a08a0141fa09f570c647fc63992f9fd707969b37c7b0590c3578172200e45ecee497ed054129366fd1c73e3cd069aba879015b13a143e77a181c0f DIST netcdf-fortran-4.4.3.tar.gz 1286951 BLAKE2B 6e68505359328bac4155065419cb9c2fb2df0de875210c0eb9a4e63312b2ec272d63ecfa73b5dcebe7cf75b58a184d1a0ccb2c06c45869d3f4573590d610d9e0 SHA512 94f51b4be889d6a9d6a86e3fcb2639ac58288969160d0f334ed6965e3c9cbacff7289b1fc54ed06e6ec8b845b19f5c409fbdcab432c8edf5c96efde887920924 -EBUILD netcdf-fortran-4.2.ebuild 808 BLAKE2B 900bc4d654162cfc4e2a4c02470fa7f615b9bed4f8c629b21443316302c843762b9802b5a7c03a430e3790698196f323c8b719387f58085e2b57399f645be19e SHA512 56d48046a1a93fb181313b613c69e65f97c3b585c23cd2f1198baebcb4beea20bf3afa12cd868bc1b557d622880484e4ea00c140b2fe93c6d8d28494ecdbc784 -EBUILD netcdf-fortran-4.4.2.ebuild 837 BLAKE2B 4e20e39ff32739ce60072d2dbd27d282390001d092e665413e79a6ebc939b69087ccf85c8130da4c4c0dc658573ab208137dad95ef80cb101133ec4f4714f43f SHA512 82fd165b669821cdb3ace19dcab11be784ed17a5fdabadc47cfcfb00c3674d9d79d391b91acd75047b8019e380e3662648c06c6af1c162fd59120b69276468f3 EBUILD netcdf-fortran-4.4.3.ebuild 823 BLAKE2B 3861caacfc024a84ee7acf6cabb20eaee4ef25e455d56423b6d254f9ad3fbacef92d6f4d480bae6b58bd095ee31aff15ea2be1b4a54b2d8bbc359a9ab736f733 SHA512 5565b2c5e10a62fe9cec2d96196ebcdc7ea9391a6d6176f8ea8074cb738326e2185e4d53ebd1fe37fb2677f690b48a3df3699e5adc1c822b33363430e2b6bf82 MISC metadata.xml 838 BLAKE2B 321e0b4dff6a06c50482f2614daee76c38498d83ed34aebc47e485e04e09e523199a8959f077cbfeb50111478ce4213932d6854212f9c7d5e9b6167d559a4ccb SHA512 9e4f8789f36ab7442f11f60145510bb4a74a7182027845caa6e0b014713311f821808eb48877a860e1c5328d2383481a5616156432f5a7e3fe78f0e3440890da diff --git a/sci-libs/netcdf-fortran/netcdf-fortran-4.2.ebuild b/sci-libs/netcdf-fortran/netcdf-fortran-4.2.ebuild deleted file mode 100644 index a722ccdc91f6..000000000000 --- a/sci-libs/netcdf-fortran/netcdf-fortran-4.2.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_STANDARD="77 90" -AUTOTOOLS_IN_SOURCE_BUILD=1 - -inherit autotools-utils fortran-2 - -DESCRIPTION="Scientific library and interface for array oriented data access" -HOMEPAGE="https://www.unidata.ucar.edu/software/netcdf/" -SRC_URI="ftp://ftp.unidata.ucar.edu/pub/netcdf/${P}.tar.gz" - -LICENSE="UCAR-Unidata" -SLOT="0/5" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples static-libs" - -RDEPEND="sci-libs/netcdf" -DEPEND="${RDEPEND} - dev-lang/cfortran -" - -src_prepare() { - # use system cfortran - rm fortran/cfortran.h || die - autotools-utils_src_prepare -} - -src_install() { - autotools-utils_src_install - if use examples; then - insinto /usr/share/doc/${PF} - doins -r examples - fi -} diff --git a/sci-libs/netcdf-fortran/netcdf-fortran-4.4.2.ebuild b/sci-libs/netcdf-fortran/netcdf-fortran-4.4.2.ebuild deleted file mode 100644 index a7ba9edabdff..000000000000 --- a/sci-libs/netcdf-fortran/netcdf-fortran-4.4.2.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_STANDARD="77 90" -AUTOTOOLS_IN_SOURCE_BUILD=1 - -inherit autotools-utils fortran-2 - -DESCRIPTION="Scientific library and interface for array oriented data access" -HOMEPAGE="https://www.unidata.ucar.edu/software/netcdf/" -SRC_URI="https://github.com/Unidata/netcdf-fortran/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="UCAR-Unidata" -SLOT="0/6" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples static-libs" - -RDEPEND="sci-libs/netcdf" -DEPEND="${RDEPEND} - dev-lang/cfortran -" - -src_prepare() { - # use system cfortran - rm libsrc/cfortran.h || die - - autotools-utils_src_prepare -} - -src_install() { - autotools-utils_src_install - if use examples; then - insinto /usr/share/doc/${PF} - doins -r examples - fi -} diff --git a/sci-libs/netcdf/Manifest b/sci-libs/netcdf/Manifest index b0729b37ccf8..c3bab9ee6c3b 100644 --- a/sci-libs/netcdf/Manifest +++ b/sci-libs/netcdf/Manifest @@ -4,6 +4,5 @@ DIST netcdf-4.6.1.tar.gz 18201700 BLAKE2B 2dab9add736d0db3ad91fb1ccda63c200fe5a2 DIST netcdf-4.7.4.tar.gz 19711158 BLAKE2B b49532e6f87b458e7f5654f70ec932d6c8c81272c97ce44df3d27bb61b01d3e005f918b959ce12e42e26f7c12309ab72eeb57a35216d20ab5761837db65741a4 SHA512 15922818fdd71be285eb7dd2fc9be2594fe9af979de3ed316465636c7bbdaec65eb151ca57ef8b703e6a360cdba036b8f9bc193ddff01ff7ce4214c0a66efa79 EBUILD netcdf-4.3.2-r1.ebuild 1499 BLAKE2B 7bfd5e8ac228a24e707089b4c0c7853051804b368c588080a1abf6080c2e81470a18814b4a999660e2e4af229b5ab68fe6d2d8f08e4f3a4bbc7a85446003d82d SHA512 63d12e90ba69030eda48a8d2c905f6cd2337b9cf9d1aa96856c4e45227f65bcb113a3aba0d0d1f7a5781a23fdbcdf0aa34c9322a4feb2b5533e591c85ca234de EBUILD netcdf-4.6.1-r1.ebuild 1339 BLAKE2B 93c0f23f0abfa4d52bd4de02f67a7521400ad82c91ade18d6c09e18fe8fb9b4e053ee7864fa0e21b472df0d813680d74c91589c9049da100191646fea03553ba SHA512 6d3b500df1de3f15a694b8162d1bc52cd4d91428a57946db1f9fa1a81adb911feb9710cf57b96693388994ad301d5600c08eb00cfcfd4aa9979815078302bc55 -EBUILD netcdf-4.6.1.ebuild 1341 BLAKE2B bc9e4f661439c5bad7436f5bfb6f0b9aed1bb1192365c519fd66b97997e8f06199a916c53c46ec48b088c41eea94d833c2f345a3525dc76f04eb06c0ba1118e9 SHA512 8db8eb13f11d42ffeb244a330a80abc0d9909364c3697f9b92f6db1665a3dca6372cdcfbfabca2023443147fc0ccc2738affee1a41a5961e25d00fa10f0c6c5e EBUILD netcdf-4.7.4.ebuild 1425 BLAKE2B 66579ba0c24b480c9cd0254daf6f166bfcb687925610ff6f25169632583f562184af9c39d10d376c5fcdfc3fc7a5cde644482b5c765e201692f3341da24e0c0f SHA512 fd5f93864cbfa93dffb46b7d1ab8a6f6ffd605de1818cd076df7098d58bfce6f88658eb1edc7663d88d25e2ad6afc65347470839969ed1dead1450fae79be966 MISC metadata.xml 1064 BLAKE2B 7980e918eb2d2f438aeb5deb4a678c2e324606b40e8d04e592df7d24492bdfbc548082f6fa372c168b09597c3511df15a046cd8f6d746db3d9aeae31cf3604ac SHA512 2aaa7a6c4659ff3daf81bdb63541ce08359f43bb7007f38dea333d0a05fc920e6780b79a9b0f79fec59d4e05a005efd3642acaedcd3223a21d5aa919110545dd diff --git a/sci-libs/netcdf/netcdf-4.6.1.ebuild b/sci-libs/netcdf/netcdf-4.6.1.ebuild deleted file mode 100644 index ed2f91c0b4a4..000000000000 --- a/sci-libs/netcdf/netcdf-4.6.1.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils ltprune - -DESCRIPTION="Scientific library and interface for array oriented data access" -HOMEPAGE="https://www.unidata.ucar.edu/software/netcdf/" -SRC_URI="https://github.com/Unidata/netcdf-c/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="UCAR-Unidata" -SLOT="0/11" -KEYWORDS="~amd64 ~arm ~ia64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux" -IUSE="+dap examples hdf +hdf5 mpi static-libs szip test tools" -RESTRICT="!test? ( test )" - -RDEPEND=" - dap? ( net-misc/curl:0= ) - hdf? ( sci-libs/hdf:0= sci-libs/hdf5:0= ) - hdf5? ( sci-libs/hdf5:0=[hl(+),mpi=,szip=,zlib] )" -DEPEND="${RDEPEND}" -# doc generation is missing many doxygen files in tar ball -# doc? ( app-doc/doxygen[dot] )" - -REQUIRED_USE="test? ( tools ) szip? ( hdf5 ) mpi? ( hdf5 )" - -S="${WORKDIR}/${PN}-c-${PV}" - -src_configure() { - local myconf - if use mpi; then - export CC=mpicc - fi - econf "${myconf}" \ - --disable-examples \ - --disable-dap-remote-tests \ - $(use_enable dap) \ - $(use_enable hdf hdf4) \ - $(use_enable hdf5 netcdf-4) \ - $(use_enable static-libs static) \ - $(use_enable tools utilities) -} - -src_test() { - # fails parallel tests: bug #621486 - emake check -j1 -} - -src_install() { - default - use examples && dodoc -r examples - prune_libtool_files -} diff --git a/sci-libs/octomap/Manifest b/sci-libs/octomap/Manifest index 20043f85f1c0..5661e1888bb4 100644 --- a/sci-libs/octomap/Manifest +++ b/sci-libs/octomap/Manifest @@ -1,7 +1,5 @@ AUX qglqt5.patch 8456 BLAKE2B babaed86e83e1403668b9c3c8cc693775f87783ab11f1f2bd1e3304dce7087186bad406909718244e1c7fa99101e95401c663022e23156a56230d4f5efac67de SHA512 7a9cbcfd49a84ac79b18c183c8d6f6244a76fa0acefdf4adff5f3952e2ad33c1ff1b8227a906d58f40bdff3d83c168e8af2c812e90837b1f98893afd060227ea -DIST octomap-1.9.0.tar.gz 1682421 BLAKE2B a299b4a956d5f9b6a67b05548f2239ad1181a4a1e673e5868d56d6e2d8f0101b2c75b114d1b7995c244c138fe04c8972104c25ca2f4ca6f75639f7326f06d8d7 SHA512 335a4ee3fe20f456afd2d8491f8fe6cfc2527d6e26aa690a69a39c1468e41d312fd84c85a1247deb11f513b9d50b8c69d34b46876f8257c205b0a99bac826237 DIST octomap-1.9.5.tar.gz 1682781 BLAKE2B 1ced023160d10c424d4bff76a0481ffe6c87c5bf8133480afe6c47ee0ee116304a811293cc0af0b303ebcad370b7ce433e85212f070ac921a9c5be41905a94ea SHA512 e58c6d33c351b14e9596e18a8702715d167c136fd029b1078ddd13a5926fe451d3b619231b5a8ccfb64b6e5fc6db8b57e6ef329099828d2f5195c0988700b581 -EBUILD octomap-1.9.0.ebuild 2015 BLAKE2B 2f504d3e91d967338f6831af1e93a38d3d59949f470f52e41a1ae2914fc52814c532bb8db3ae1a9f5e35ba4280c4643b29101c077c05847753eb229343f9effa SHA512 71af329bdd24260600d9fd79f474b0e587ce674c8746935eb673b50a9374347d340bf00313dc32b71575f3ea92900cacf04a2f369da47387010188da4a666899 EBUILD octomap-1.9.5.ebuild 1690 BLAKE2B 6870c1c4024896a857df097d4c61620993b37aaaf4faed6167e79677407e61971bd74285dd69b1e1a73019ec402c17ab608a2617765a9845c4f673efd018f862 SHA512 edfee4f4e8e0a5c78c05c5b6e5dbb54c8a0a7e2b5311facfc091aceb0c5e97a87a704af9b13f0637ada6fc6d304106e0fadaebdc4aabacf6683f1f033a17dd68 EBUILD octomap-9999.ebuild 1975 BLAKE2B 63b34fd1c61e447e16c9e4b988e5b564d421cea9f15fad3a5e8579222c0f7f174e6c84167d7960c1e6e7d660aaa645ce88d92eba0ceb33c5254db3ef6bea7793 SHA512 018a25e757235bb8509c2e502bd87b286d484037aa4738e06014051675da58a24562580fc284276f18cbe2492779fa4214dd361aed49dbfa8170df6e81ea9f8d MISC metadata.xml 703 BLAKE2B 52e5edafca7a58ff0efddeea0eb60894c9bd26c5360fb77c41982edf0b27dec9517bb0470049d92dee05cc242effc7bb2e253a275f6e5d422e7e214676f7ffe8 SHA512 66b3c9143aea83a044a719031b4eb0d140e599048885ca6bb02e74ebebbbd2e9abccf11dc0af32e6ce94d3849dcf639ebaf34ff2c8d6e34f32767e08e465c6b0 diff --git a/sci-libs/octomap/octomap-1.9.0.ebuild b/sci-libs/octomap/octomap-1.9.0.ebuild deleted file mode 100644 index 0472eb73728e..000000000000 --- a/sci-libs/octomap/octomap-1.9.0.ebuild +++ /dev/null @@ -1,93 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -SCM="" -if [ "${PV#9999}" != "${PV}" ] ; then - SCM="git-r3" - EGIT_REPO_URI="https://github.com/OctoMap/octomap" -fi - -inherit ${SCM} cmake-utils - -if [ "${PV#9999}" != "${PV}" ] ; then - KEYWORDS="" - SRC_URI="" -else - KEYWORDS="~amd64 ~arm" - SRC_URI="https://github.com/OctoMap/octomap/archive/v${PV}.tar.gz -> ${P}.tar.gz" -fi - -DESCRIPTION="An Efficient Probabilistic 3D Mapping Framework Based on Octrees" -HOMEPAGE="http://octomap.github.io/" -IUSE="qt5 dynamicEDT3D doc" -LICENSE="BSD qt5? ( GPL-2 )" -SLOT="0/19" - -RDEPEND=" - qt5? ( - virtual/opengl - dev-qt/qtcore:5 - dev-qt/qtgui:5 - dev-qt/qtwidgets:5 - x11-libs/libQGLViewer:= - ) -" -DEPEND="${RDEPEND} - doc? ( - app-doc/doxygen - media-gfx/graphviz - ) -" - -PATCHES=( "${FILESDIR}/qglqt5.patch" ) - -src_prepare() { - sed -e 's/DESTINATION lib/DESTINATION ${CMAKE_INSTALL_LIBDIR}/' \ - -i */CMakeLists.txt \ - -i */CMakeModules/InstallPkgConfigFile.cmake || die - sed -e 's/iewer-qt4/iewer-qt5/g' \ - -i octovis/CMakeModules/FindQGLViewer.cmake || die - cmake-utils_src_prepare -} - -src_configure() { - local mycmakeargs=( - "-DBUILD_OCTOVIS_SUBPROJECT=$(usex qt5 ON OFF)" - "-DOCTOVIS_QT5=TRUE" - "-DBUILD_DYNAMICETD3D_SUBPROJECT=$(usex dynamicEDT3D ON OFF)" - ) - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile - if use doc ; then - cd "${BUILD_DIR}/octomap" - emake docs - if use dynamicEDT3D ; then - cd "${BUILD_DIR}/dynamicEDT3D" - emake docs_dynamicEDT3D - fi - fi -} - -src_install() { - cmake-utils_src_install - if use doc ; then - insinto /usr/share/doc/${PF}/html/octomap - doins -r "${S}/octomap/doc/html/"* - if use dynamicEDT3D ; then - insinto /usr/share/doc/${PF}/html/dynamicEDT3D - doins -r "${S}/dynamicEDT3D/doc/html/"* - fi - fi - - insinto /usr/share/ros_packages/${PN} - doins "${ED}/usr/share/${PN}/package.xml" - if use qt5; then - insinto /usr/share/ros_packages/octovis - doins "${ED}/usr/share/octovis/package.xml" - fi -} diff --git a/sci-libs/openblas/Manifest b/sci-libs/openblas/Manifest index bb5530f8c840..66dc9496cb55 100644 --- a/sci-libs/openblas/Manifest +++ b/sci-libs/openblas/Manifest @@ -2,12 +2,8 @@ AUX dont-clobber-fflags.patch 1251 BLAKE2B 7451d67e8676be33c2070b9eea767d24d961e AUX openblas-0.3.10-dont-clobber-fflags.patch 1209 BLAKE2B 8759226f8a2b9371a89434f14e5db6e10b079dec5b260b438811f476ceeded67bcf2a596c7f4892ec2b3388a3437c9cd276592bb01ebb84af69977002e0bbe88 SHA512 6b239e750a6c5baf6dfca58dc8036a1de34efd917839558d2b2ff1d6fab00067dfe953bfb0837d8f19e1f52cf5ab7f92f9e3f65f3963fd3ae9052c0a00d6065d AUX openblas-0.3.12-shared-blas-lapack.patch 2008 BLAKE2B 2d3a4a90d8144cbf149b7711b67364176a94287f26448930b5a4fd29fe761fb250e9007c580fb1ffa8148c477e2f4057f9cd8d7aa07efeb85caa842802d358fd SHA512 3f0d4b480549565c838eba6371e0990c162f56a226f9d26e1639e012ae3f39809f8c6badcf8fdfbb1258f45367dbaff9c4c611b8b44bac27d341aea954f0133e AUX shared-blas-lapack.patch 5557 BLAKE2B 1e41b18e5a9c12eec9283c835e9b09e4ca89c6512f47a2f158f29c8a8a822d0365ad350177e379bec13f7c7574d8debd55a2f612027ff661c67ac7b226bb2370 SHA512 baa23f0c2bc8b7bc3384d7b8fa20eb5e095f20e1d8859badb55e680ccd435a851da6099b20aa203e46d62096ac93663ea130bea04dabf19432522e53139d393b -DIST openblas-0.3.10.tar.gz 12246979 BLAKE2B 507aa3f058b841f477720cff98480afda5c3e236b688fb1a12ff45ce20c42c6e84c786d62a5db7e6de6d133d40286e58777fcb51d6542b7030629d55ba12086f SHA512 64a5f983b2f6e02cdb6e0f14433498cc5daa1ccfb49246f7a2dcd38f9982fa608f2abea069fe0e35012af8c1441c43d1f6418eaccd40795f5002fed1c36ce05d DIST openblas-0.3.12.tar.gz 12325103 BLAKE2B 3d6706e59e83f87dd58b287753bf697de99e83c8a4484453f120d8f8c9c69ea5b481a143db04342a1dcb1779ce548a49618cf4941d08d636e12ed481305e8fb5 SHA512 1ff5a065c41f7e460857f8428fc77900b189f051fa8129eea9ae93237f234d387cc1c6e627c2c95636164f512d4d721d4229729f04a04e8d5f655abbf5463d98 DIST openblas-0.3.13.tar.gz 12437434 BLAKE2B d8f9d3296506c6148cd506278f0b6a2a4fe50975a7fd3f54108e98e88a13002b1035f5697322ba73df7c6397faee6d0772c1d4d46b66db8e862f17b980dbdf97 SHA512 86e7f496587cc35d7feede99cbe3cf627ef690dd7489bb03b95f7d15ed758e32baf17d79f17b1de187184394233f60a8249a64dd53c3d59a9540db92269b7ee4 -DIST openblas-0.3.9.tar.gz 12189745 BLAKE2B 3cc4c6a403d6a52845cf4ff8cef254f57587e17e3d09bfb6ed7c02ad06a6002e50b340177c73a944c2a621c12b7f494c516025751c194d019662c0b4db17f4dc SHA512 c6b8ee465f1cf53b37f21ec3ff9a28d5cafe20fec59d8c1bff5923a9e1989dfa5ae8c032a5d43988fe7722ed08c64c7957a3d30e6ae917e2e7aa2977a91e67a3 -EBUILD openblas-0.3.10.ebuild 4100 BLAKE2B 2b818eddad94b7691724c12acacf102cde3b24b1c839e322a863bfae3722445e53a128ab47a011f12c5204fed7b51e93ddaef933de8c6360cfeb5b519a863401 SHA512 89b952f9b41d7e39cc99f0dac5d88e8d2402808207e208168208fe94c0dd46116fd1308228e7606a0cce3dbae499b6c8e6a4383bc5c8084efe3a95b4fde87f6c -EBUILD openblas-0.3.12-r1.ebuild 5734 BLAKE2B f188bcbe5fd02f918d5de33c2f95fd88a43852c54155e9056efab884fc60390126dc2f98c38dbd22a89d70ef5ebbb87c806423c07e949cf44d050ab7277d8be4 SHA512 678906ad44a705091e6c9a4919367f2e7efdd475f793abfb8c7a5fec99e73c5b034c0b1cc30f45385f7104808d5fbff3295c14f5f3ee97e6090db30761ae7122 -EBUILD openblas-0.3.13.ebuild 5735 BLAKE2B a4eff769d37eba638e2946a14049d19e6b8f7b029925d9b9cc7b393f83369d14bf5dbf862e8e6c535ef53f0aeeece6f3d7975967d9cf8095c7be2ede6d7dbe11 SHA512 7268789adee978e9ede595819f16a7ab17f12d6629b0db6b6b458f970a04297759b0f1de35f8633ff4c93daa152492418d770aed5e1a6ad08e64322bf4daf764 -EBUILD openblas-0.3.9-r1.ebuild 4064 BLAKE2B 3029d77f33eb1d2ff3fb72c836f000ef74a35a0b91a5f98390c8afd1e3afdb8fda6ae8ba3929c617f0885a6a805b93641ce4234877139b199ab0141407b69696 SHA512 5e4a6f69abceb7cd27cbe7178aeb95cbd2551c5e30cfde67178b2d394a23cff3ee35df9bbe185b2173d33af40c15e6ee44d746749c919ff7394e95fb05203e48 +EBUILD openblas-0.3.12-r1.ebuild 5733 BLAKE2B b272b29e82e16ba4a47e16e78d97e4049dec58fddee0cad16d963012ef6344772f3661751ae796b6f28247172edd94d5db2b1eb3d84e195ec617f447d02b1b15 SHA512 3794725cf6daedb442892fe8971303d6d6fde25f0d55aec63f2ce7c8c5ffdb2cf48640a96d6f2ca839590bd1de1321e382ec47c4545cecef8573b9030d5ed692 +EBUILD openblas-0.3.13.ebuild 5734 BLAKE2B f2d4bde48b206c4d6e97029b617f0538978144b0e3e239cf79837bf6e1525dbe398a0d3af121368299752646217e3cd3e29c4f3d1e4e549fcb9ce9c1598c5f25 SHA512 846370655b16dbc45a518374e4c1714eb135a6fab2c36059c602ee4dc236b952eba54123e536a07b484d994a68f26b94ac740ef7f645083c0ccb855492195627 MISC metadata.xml 1546 BLAKE2B 3e6379f0e8624978c09272d6440f8234379ebc886e1f72d05f89ffd9914da46cd66d94f5d408f11bb585ac28bde6d222b89e2b9608de550d94fdcbae25e2d910 SHA512 a4680cd8f28c4028acfb9621281ee0a08916f62c99cec883e953390ac9d55d47fa3c667c4fabb54121f7010f67d1e180c1c1faa5eceffe6a89d379ef4419cca7 diff --git a/sci-libs/openblas/openblas-0.3.10.ebuild b/sci-libs/openblas/openblas-0.3.10.ebuild deleted file mode 100644 index 07e33b946b15..000000000000 --- a/sci-libs/openblas/openblas-0.3.10.ebuild +++ /dev/null @@ -1,143 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit flag-o-matic fortran-2 toolchain-funcs - -DESCRIPTION="Optimized BLAS library based on GotoBLAS2" -HOMEPAGE="http://xianyi.github.com/OpenBLAS/" -SRC_URI="https://github.com/xianyi/OpenBLAS/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~arm ~arm64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" -IUSE="dynamic eselect-ldso index-64bit openmp pthread test" -REQUIRED_USE="?? ( openmp pthread )" -RESTRICT="!test? ( test )" - -RDEPEND=" - eselect-ldso? ( >=app-eselect/eselect-blas-0.2 - !app-eselect/eselect-cblas - >=app-eselect/eselect-lapack-0.2 )" -BDEPEND="virtual/pkgconfig" - -PATCHES=( - "${FILESDIR}/shared-blas-lapack.patch" - "${FILESDIR}/${PN}-0.3.10-dont-clobber-fflags.patch" -) - -pkg_setup() { - fortran-2_pkg_setup - use openmp && tc-check-openmp - - # We need to filter these while building the library, and not just - # while building the test suite. Will hopefully get fixed upstream: - # https://github.com/xianyi/OpenBLAS/issues/2657 - use test && filter-flags "-fbounds-check" "-fcheck=bounds" "-fcheck=all" - - export CC=$(tc-getCC) FC=$(tc-getFC) - - use dynamic && \ - export DYNAMIC_ARCH=1 TARGET=GENERIC NUM_THREADS=64 NO_AFFINITY=1 - - # disable submake with -j - export MAKE_NB_JOBS=-1 - - # Set these to "nothing" to prevent the default optimization flags - # from being added in Makefile.system. - export COMMON_OPT=" " FCOMMON_OPT=" " - - USE_THREAD=0 - if use openmp; then - USE_THREAD=1; USE_OPENMP=1; - elif use pthread; then - USE_THREAD=1; USE_OPENMP=0; - fi - export USE_THREAD USE_OPENMP - - export PREFIX="${EPREFIX}/usr" -} - -src_unpack() { - default - - mv "${WORKDIR}"/*OpenBLAS* "${S}" || die - - if use index-64bit; then - cp -aL "${S}" "${S}-index-64bit" || die - fi -} - -src_compile() { - # We have to try extra hard to override AR for now. - # https://github.com/xianyi/OpenBLAS/issues/2654 - emake AR="$(tc-getAR)" - emake AR="$(tc-getAR)" -Cinterface shared-blas-lapack - if use index-64bit; then - emake -C"${S}-index-64bit" INTERFACE64=1 LIBPREFIX=libopenblas64 - fi -} - -src_test() { - emake tests -} - -src_install() { - emake install DESTDIR="${D}" OPENBLAS_INCLUDE_DIR='$(PREFIX)'/include/${PN} \ - OPENBLAS_LIBRARY_DIR='$(PREFIX)'/$(get_libdir) - dodoc GotoBLAS_*.txt *.md Changelog.txt - - if use eselect-ldso; then - insinto /usr/$(get_libdir)/blas/openblas/ - doins interface/libblas.so.3 - dosym libblas.so.3 usr/$(get_libdir)/blas/openblas/libblas.so - doins interface/libcblas.so.3 - dosym libcblas.so.3 usr/$(get_libdir)/blas/openblas/libcblas.so - - insinto /usr/$(get_libdir)/lapack/openblas/ - doins interface/liblapack.so.3 - dosym liblapack.so.3 usr/$(get_libdir)/lapack/openblas/liblapack.so - fi - - if use index-64bit; then - insinto /usr/$(get_libdir)/ - dolib.so "${S}-index-64bit"/libopenblas64*.so* - fi -} - -pkg_postinst() { - use eselect-ldso || return - local libdir=$(get_libdir) me="openblas" - - # check blas - eselect blas add ${libdir} "${EROOT}"/usr/${libdir}/blas/${me} ${me} - local current_blas=$(eselect blas show ${libdir} | cut -d' ' -f2) - if [[ ${current_blas} == "${me}" || -z ${current_blas} ]]; then - eselect blas set ${libdir} ${me} - elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." - else - elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." - elog "To use blas [${me}] implementation, you have to issue (as root):" - elog "\t eselect blas set ${libdir} ${me}" - fi - - # check lapack - eselect lapack add ${libdir} "${EROOT}"/usr/${libdir}/lapack/${me} ${me} - local current_lapack=$(eselect lapack show ${libdir} | cut -d' ' -f2) - if [[ ${current_lapack} == "${me}" || -z ${current_lapack} ]]; then - eselect lapack set ${libdir} ${me} - elog "Current eselect: LAPACK ($libdir) -> [${current_lapack}]." - else - elog "Current eselect: LAPACK ($libdir) -> [${current_lapack}]." - elog "To use lapack [${me}] implementation, you have to issue (as root):" - elog "\t eselect lapack set ${libdir} ${me}" - fi -} - -pkg_postrm() { - if use eselect-ldso; then - eselect blas validate - eselect lapack validate - fi -} diff --git a/sci-libs/openblas/openblas-0.3.12-r1.ebuild b/sci-libs/openblas/openblas-0.3.12-r1.ebuild index 1426aa247ad5..4d8d73725fd1 100644 --- a/sci-libs/openblas/openblas-0.3.12-r1.ebuild +++ b/sci-libs/openblas/openblas-0.3.12-r1.ebuild @@ -13,7 +13,7 @@ S="${WORKDIR}"/OpenBLAS-${PV} LICENSE="BSD" SLOT="0" KEYWORDS="amd64 ~arm ~arm64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" -IUSE="dynamic eselect-ldso index-64bit openmp pthread +relapack test" +IUSE="dynamic eselect-ldso index-64bit openmp pthread relapack test" REQUIRED_USE="?? ( openmp pthread )" RESTRICT="!test? ( test )" diff --git a/sci-libs/openblas/openblas-0.3.13.ebuild b/sci-libs/openblas/openblas-0.3.13.ebuild index 1c5dedff1843..4566f928af81 100644 --- a/sci-libs/openblas/openblas-0.3.13.ebuild +++ b/sci-libs/openblas/openblas-0.3.13.ebuild @@ -13,7 +13,7 @@ S="${WORKDIR}"/OpenBLAS-${PV} LICENSE="BSD" SLOT="0" KEYWORDS="~amd64 ~arm ~arm64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" -IUSE="dynamic eselect-ldso index-64bit openmp pthread +relapack test" +IUSE="dynamic eselect-ldso index-64bit openmp pthread relapack test" REQUIRED_USE="?? ( openmp pthread )" RESTRICT="!test? ( test )" diff --git a/sci-libs/openblas/openblas-0.3.9-r1.ebuild b/sci-libs/openblas/openblas-0.3.9-r1.ebuild deleted file mode 100644 index 8a643b07e309..000000000000 --- a/sci-libs/openblas/openblas-0.3.9-r1.ebuild +++ /dev/null @@ -1,141 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 -inherit flag-o-matic fortran-2 toolchain-funcs - -DESCRIPTION="Optimized BLAS library based on GotoBLAS2" -HOMEPAGE="http://xianyi.github.com/OpenBLAS/" -SRC_URI="https://github.com/xianyi/OpenBLAS/archive/v${PV} -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" -IUSE="dynamic eselect-ldso index-64bit openmp pthread test" -REQUIRED_USE="?? ( openmp pthread )" -RESTRICT="!test? ( test )" - -RDEPEND=" - eselect-ldso? ( >=app-eselect/eselect-blas-0.2 - !app-eselect/eselect-cblas - >=app-eselect/eselect-lapack-0.2 )" - -DEPEND="virtual/pkgconfig" - -PATCHES=( - "${FILESDIR}/shared-blas-lapack.patch" - "${FILESDIR}/dont-clobber-fflags.patch" -) - -pkg_setup() { - fortran-2_pkg_setup - use openmp && tc-check-openmp - - # We need to filter these while building the library, and not just - # while building the test suite. Will hopefully get fixed upstream: - # https://github.com/xianyi/OpenBLAS/issues/2657 - use test && filter-flags "-fbounds-check" "-fcheck=bounds" "-fcheck=all" - - export CC=$(tc-getCC) FC=$(tc-getFC) - - use dynamic && \ - export DYNAMIC_ARCH=1 TARGET=GENERIC NUM_THREADS=64 NO_AFFINITY=1 - - # disable submake with -j - export MAKE_NB_JOBS=-1 - - # Set these to "nothing" to prevent the default optimization flags - # from being added in Makefile.system. - export COMMON_OPT=" " FCOMMON_OPT=" " - - USE_THREAD=0 - if use openmp; then - USE_THREAD=1; USE_OPENMP=1; - elif use pthread; then - USE_THREAD=1; USE_OPENMP=0; - fi - export USE_THREAD USE_OPENMP - - export PREFIX="${EPREFIX}/usr" -} - -src_unpack() { - default - mv "${WORKDIR}"/*OpenBLAS* "${S}" || die - if use index-64bit; then - cp -aL "${S}" "${S}-index-64bit" || die - fi -} - -src_compile() { - # We have to try extra hard to override AR for now. - # https://github.com/xianyi/OpenBLAS/issues/2654 - emake AR="$(tc-getAR)" - emake AR="$(tc-getAR)" -Cinterface shared-blas-lapack - if use index-64bit; then - emake -C"${S}-index-64bit" INTERFACE64=1 LIBPREFIX=libopenblas64 - fi -} - -src_test() { - emake tests -} - -src_install() { - emake install DESTDIR="${D}" OPENBLAS_INCLUDE_DIR='$(PREFIX)'/include/${PN} \ - OPENBLAS_LIBRARY_DIR='$(PREFIX)'/$(get_libdir) - dodoc GotoBLAS_*.txt *.md Changelog.txt - - if use eselect-ldso; then - insinto /usr/$(get_libdir)/blas/openblas/ - doins interface/libblas.so.3 - dosym libblas.so.3 usr/$(get_libdir)/blas/openblas/libblas.so - doins interface/libcblas.so.3 - dosym libcblas.so.3 usr/$(get_libdir)/blas/openblas/libcblas.so - - insinto /usr/$(get_libdir)/lapack/openblas/ - doins interface/liblapack.so.3 - dosym liblapack.so.3 usr/$(get_libdir)/lapack/openblas/liblapack.so - fi - - if use index-64bit; then - insinto /usr/$(get_libdir)/ - dolib.so "${S}-index-64bit"/libopenblas64*.so* - fi -} - -pkg_postinst() { - use eselect-ldso || return - local libdir=$(get_libdir) me="openblas" - - # check blas - eselect blas add ${libdir} "${EROOT}"/usr/${libdir}/blas/${me} ${me} - local current_blas=$(eselect blas show ${libdir} | cut -d' ' -f2) - if [[ ${current_blas} == "${me}" || -z ${current_blas} ]]; then - eselect blas set ${libdir} ${me} - elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." - else - elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." - elog "To use blas [${me}] implementation, you have to issue (as root):" - elog "\t eselect blas set ${libdir} ${me}" - fi - - # check lapack - eselect lapack add ${libdir} "${EROOT}"/usr/${libdir}/lapack/${me} ${me} - local current_lapack=$(eselect lapack show ${libdir} | cut -d' ' -f2) - if [[ ${current_lapack} == "${me}" || -z ${current_lapack} ]]; then - eselect lapack set ${libdir} ${me} - elog "Current eselect: LAPACK ($libdir) -> [${current_lapack}]." - else - elog "Current eselect: LAPACK ($libdir) -> [${current_lapack}]." - elog "To use lapack [${me}] implementation, you have to issue (as root):" - elog "\t eselect lapack set ${libdir} ${me}" - fi -} - -pkg_postrm() { - if use eselect-ldso; then - eselect blas validate - eselect lapack validate - fi -} diff --git a/sci-libs/openlibm/Manifest b/sci-libs/openlibm/Manifest index 8f611b5162d6..79250076ebdc 100644 --- a/sci-libs/openlibm/Manifest +++ b/sci-libs/openlibm/Manifest @@ -1,6 +1,4 @@ AUX openlibm-0.7.2-make_inc.patch 1593 BLAKE2B 192e3c50401fe9c6a063c3cd80f8a13c9d4c1adc01d6ae4e6175787e1facf79e53d8d576cf7739690b737bfc7e6ede9e73deb60dc448c3d86d7dbf9e8c27c1c8 SHA512 f9529ab9439cf1010b8ec417476a1267a1317b7334271ac83bbaee3895a4ac577851de2a84c2778d9128b0d9d48c5867836f7a4f205da98af6b131fe78210fd4 -DIST openlibm-0.7.0.tar.gz 366359 BLAKE2B 9dc545e3effedaadefda31ae75759ac8e5afb74250e8a7d9016b1406c235a298a375641207d3561365d750ec442e5ecdbfb1ce8b179a17bdaa48a5e2d5e5af25 SHA512 e52245ea93513fb1d9eade348f7c4ad4f1b500944024f7d52d71d43af908059e581ea77df6fc879414ff17c860263debec3aaf6ac86eea03ee1fe23d180487ed DIST openlibm-0.7.2.tar.gz 366285 BLAKE2B 0086d026e53c337e20dc895dad38157308b16392f590c8a2c2f7699f2bb8bd5bd0d1931672c2d31a320af0a5ad1cc2e10f2eeb953f30382cfcae5aaac0adc478 SHA512 25e5c28ef898d905ff589d24efb87a99f3772d59596ad5660afc7cafbcd709bca167e863aadc84b90b930add036d285db1332faa9adf1b73562abf1185b9ee5c -EBUILD openlibm-0.7.0.ebuild 711 BLAKE2B ea950f0d7ac74e99dd4decf0b7b27b2ad1e67fe31c7e159b8226a6eedd3821655aad2db71e0695ce4bccb2e0b3c4f033590f9a94d9606c3ab3497e4e2bfc8f1a SHA512 092836047064e721859e8a8197bfa8fea07533f11b9ac1429bb15c0ccb6832bb1341f547d7b04f3dec10de70dcbf0d42ad95f29f927b38900001483ab7bbf223 EBUILD openlibm-0.7.2.ebuild 877 BLAKE2B a888b30dc5a5686ce38de477d76a60b9ca57604bb7758f7e807c6a1c6f4d765fb692856a0591325e7bd133ce6f9e49080f44ddc4c7b3bf6b0fe94041b157e58c SHA512 e9bbacc7a896e2c142e02a46025809b2abb1913938ea8602be8cc299a489775c8db8d173e78fc7d463e29e835f035d65b6708e2a7f05e6762b269619943f25ce MISC metadata.xml 770 BLAKE2B a75ed3c2d1a22ecb086b22d9ffad8c6d4ab002b7bb63acc60867a88a3126ad3feb1b1ea75ded8e798cd59d128236ab776a53131c6428aa422e1ffa31ee66e5d7 SHA512 c95d57f8ffc872aa8e0b4433d7b51bdb2c06f57c7ba00a66f7ecce06310db0343ff91081249154e2c1e32c9a90ed510704603c337530c1ee1acf36ce808b7b70 diff --git a/sci-libs/openlibm/openlibm-0.7.0.ebuild b/sci-libs/openlibm/openlibm-0.7.0.ebuild deleted file mode 100644 index aae8815fd2f8..000000000000 --- a/sci-libs/openlibm/openlibm-0.7.0.ebuild +++ /dev/null @@ -1,23 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit eutils toolchain-funcs fortran-2 - -DESCRIPTION="High quality system independent, open source libm" -HOMEPAGE="https://github.com/JuliaLang/openlibm" -SRC_URI="https://codeload.github.com/JuliaMath/openlibm/tar.gz/v${PV} -> ${P}.tar.gz" - -LICENSE="public-domain MIT ISC BSD-2 LGPL-2.1+" -SLOT="0/${PV}.0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" - -IUSE="static-libs" - -src_install() { - emake DESTDIR="${D}" prefix="${EPREFIX}/usr" \ - libdir="${EPREFIX}/usr/$(get_libdir)" install - use static-libs || rm "${D}/${EPREFIX}/usr/$(get_libdir)/libopenlibm.a" || die "rm failed" - dodoc README.md -} diff --git a/sci-libs/orocos_kdl/Manifest b/sci-libs/orocos_kdl/Manifest index 6a76399448fc..31b24fbce97b 100644 --- a/sci-libs/orocos_kdl/Manifest +++ b/sci-libs/orocos_kdl/Manifest @@ -1,6 +1,4 @@ -DIST orocos_kinematics_dynamics-1.3.1.tar.gz 202471 BLAKE2B 46b7bdb62c09e9077b84d914b4d780995f27d486d9c734ef2ee1f8b8c2219265cdba5e63830225e2435b5760b79f00d478670e95b71666959afa773f8bcfe5ce SHA512 93abd9dd5aef3710f784f9db8eea4738458bffa5295923993e2d77656c18f7354559412fb7eb5f1e9da7112de19aa36d3f0f68f149852f955bce960fd3b719e7 DIST orocos_kinematics_dynamics-1.4.0.tar.gz 215004 BLAKE2B 02ca44195af2ae2bd5c2293869893c56846501e2055ca1cacef602ffdd44824fc618ed528d351ee2212b7c087ff5e69438ab87e9fb8813d8a4eb4c143fdbfd27 SHA512 7156465e2aff02f472933617512069355836a03a02d4587cfe03c1b1d667a9762a4e3ed6e055b2a44f1fce1b6746179203c7204389626a7b458dcab1b28930d8 -EBUILD orocos_kdl-1.3.1-r1.ebuild 1646 BLAKE2B da6283dc04b4edaf59a88818764dab2d65756c3702a6cafe67a495e767be7932a89d8fc4f0f3fc32c0ea6f49841a1dddad0f117f043a44f6ebbb91e7ec047707 SHA512 bbeb90da6a14f6d7d1656535207bacce3385b300fcfa017acda21d674a9f8fcbf752bb020a82432d397484c3344cddaea1836c57946a6f71a4c3a8117ca4e5e0 EBUILD orocos_kdl-1.4.0.ebuild 1649 BLAKE2B 724d04a6ba1eb9726a0321f090d8300f5d77ef675fad7656a4b94e5885409fbb92c71b89f1301969d2c007bb2d3c0901c05667ea1b51f6c5d63b834a6a894634 SHA512 fdb4f9996afac17294ce5c00390e91f9709025f746cb6551123f279e1b899e352054007f13ba140ae07ee7633987bed292fa0ccc9d510022e192957c89d6bc4f EBUILD orocos_kdl-9999.ebuild 1649 BLAKE2B 724d04a6ba1eb9726a0321f090d8300f5d77ef675fad7656a4b94e5885409fbb92c71b89f1301969d2c007bb2d3c0901c05667ea1b51f6c5d63b834a6a894634 SHA512 fdb4f9996afac17294ce5c00390e91f9709025f746cb6551123f279e1b899e352054007f13ba140ae07ee7633987bed292fa0ccc9d510022e192957c89d6bc4f MISC metadata.xml 934 BLAKE2B d82ddb6554a65a4221e67f46cfc6ff218c8caff71662090cd22332bc8f77c88b54c0ed8a7ccde53f00c6ef9c7faa386a82ca4654652ed7876c84105cd4426451 SHA512 09dc8b8c362da950ea685ee6cb2d7eb3ee400f34fca286fa0bf064f3cc4338a5ad2ca8917c951211e9407122a3bd7a1f23e5d394bfed901d6f69e9caefe5eaed diff --git a/sci-libs/orocos_kdl/orocos_kdl-1.3.1-r1.ebuild b/sci-libs/orocos_kdl/orocos_kdl-1.3.1-r1.ebuild deleted file mode 100644 index e45b79724fb4..000000000000 --- a/sci-libs/orocos_kdl/orocos_kdl-1.3.1-r1.ebuild +++ /dev/null @@ -1,72 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -SCM="" -if [ "${PV#9999}" != "${PV}" ] ; then - SCM="git-r3" - EGIT_REPO_URI="https://github.com/orocos/orocos_kinematics_dynamics" -fi - -inherit ${SCM} cmake-utils - -if [ "${PV#9999}" != "${PV}" ] ; then - KEYWORDS="" - SRC_URI="" -else - KEYWORDS="~amd64 ~arm ~x86" - SRC_URI="https://github.com/orocos/orocos_kinematics_dynamics/archive/v${PV}.tar.gz -> orocos_kinematics_dynamics-${PV}.tar.gz" -fi - -DESCRIPTION="Kinematics and Dynamics Library (KDL)" -HOMEPAGE="https://www.orocos.org/kdl" -LICENSE="LGPL-2.1" -SLOT="0" -IUSE="doc test examples models" -RESTRICT="!test? ( test )" - -RDEPEND="dev-cpp/eigen:3" -DEPEND="${RDEPEND} - test? ( dev-util/cppunit ) - doc? ( app-doc/doxygen )" -REQUIRED_USE="examples? ( models )" - -DOCS=( README ) - -if [ "${PV#9999}" != "${PV}" ] ; then - S=${WORKDIR}/${P}/orocos_kdl -else - S=${WORKDIR}/orocos_kinematics_dynamics-${PV}/orocos_kdl -fi - -src_configure() { - local mycmakeargs=( - "$(cmake-utils_use_enable test TESTS)" - "$(cmake-utils_use_enable examples EXAMPLES)" - "-DBUILD_MODELS=$(usex models ON OFF)" - ) - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile - cd "${BUILD_DIR}" - use doc && emake docs -} - -src_test() { - cd "${BUILD_DIR}" - emake check -} - -src_install() { - cmake-utils_src_install - cd "${BUILD_DIR}" - use doc && dohtml -r doc/api/html/* - use examples && dobin "${BUILD_DIR}/examples/"{geometry,trajectory_example,chainiksolverpos_lma_demo} - - # Need to have package.xml in our custom gentoo path - insinto /usr/share/ros_packages/${PN} - doins "${ED}/usr/share/${PN}/package.xml" -} diff --git a/sci-libs/p4est/Manifest b/sci-libs/p4est/Manifest index 7e04318ab07f..2767573d5fbe 100644 --- a/sci-libs/p4est/Manifest +++ b/sci-libs/p4est/Manifest @@ -1,8 +1,5 @@ -DIST libsc-2.0.tar.gz 296392 BLAKE2B b5e1ca5cf6802ed38c32db5e7a77aec2fc636d88f2562314088dc16d13a0dccd24706276b05f8ddd70bc3769270a378c0089873fb2a21ebc93d6ca2622d7a58e SHA512 e4cfe42a1c1fe17412e1ffb6ebebe1f760861a7fb707a6f8fd01cdebda96b166ee05e7ff034f3b9e30de5e9baa82c9a2cebe93d40772dbd206603321de40559c DIST libsc-2.2.tar.gz 311542 BLAKE2B 0879be69208f0964d73cc297a64b158ad88344e876a90dd4bd39c80fc0cf8237f4551cb684dee36e08068fa04644b887ec56230335a9984363055c1248aa6185 SHA512 97953794fdeb985bedb1dc9378f10ed4824446c63762d7813aced3309c2d6b27368c91fecb22587dccdf8b3b42aaaba9e782b739086cf542570360795897ac14 -DIST p4est-2.0.tar.gz 1296762 BLAKE2B 1d755ec72905da069b9c91182a437c59107189402eb26444cf7fc1755b81bdbfad9aa25802720df401e8d434e5ac67e68b1d7dd5bf312f881017925498ad7514 SHA512 05f8a95ad431bd36fd3e48ca9360de0f90d1af7dfc77601cd46766898a9bc82b9157e22bdb6135e7003f59c7ecc4cd9ad34b89de25ba3c6f11a86d46cac8592c DIST p4est-2.2.tar.gz 1323529 BLAKE2B 262cb8d1ceff1329a71fd302b12c1650e9c099e72a9a93b4abef5822b16a28af0ee1ce9a338c524c2077d4bff83e607e9346f5bb1c660aa9afa8241bb631a637 SHA512 8475e0b6ab1225b22e7538c9c9b227f9aef86f78adf0706065a05f4682618f8f5d3878c18c11b8b13b3912e1de95f40b0ef5f5f5d217c02196993ac07f085299 -EBUILD p4est-2.0.ebuild 2853 BLAKE2B a1ecf45f94636c199d0976af9af9f2dc79fea444bb4148cbddf1d06b51561417c02f444e6f5be131059c542e430fcc6002f296da206e6c8f7c4b37143f4263f7 SHA512 10d56e55b8625b5132b4f99e2e78fbdb3234df094f458ae384f629bcb2fd73d4077a20f834fca5359f967324dd894afbe4634f975dbe13ae732c0e2e1f095549 EBUILD p4est-2.2-r100.ebuild 2928 BLAKE2B f895c1e2642760a1faa207519453f84e0ee763673162ccef3da9fb83542de68b66f74faff67e76be559a845b988f805d47225e7adf02946507630cca6761f86b SHA512 d9e7026c87372449a4b5499021eeb340a1a7d3f45b4b29f799f749d25ac753b52fbd94e89463a0a06995827a28c3e4d72763451ba8f9136edc0c0bb87cc9aae2 EBUILD p4est-2.2.ebuild 2853 BLAKE2B a1bf41e6371e1445bd53292b9b804cfdee21241508959c95eeecbc0c002b8f3122e54499fde49c0bfd089d478fc13f6d4f05ae2e0893032e22a6d3cea1b7f8a7 SHA512 7047a4f5cb50d17e0189366f9f25c67664ba5d043ca7626ab3b96617a73b375f442150a2acaef665b6070f5e4bd537178470e425979b8f12f5ae389b10464529 EBUILD p4est-9999.ebuild 2928 BLAKE2B 8b275b896e9ec3b2913660ea92cbf1573c5ede82ccd18bbc51b2d550f278566edaef69d07142531611ed527a0e0661fb03cc0ef919be33b5a2c683ccc520e796 SHA512 888bc5d6b2242207431072d4d4736f1676649e4140acc47b6511f430567a850103c7e482588eadc39b3d799dc7e06474169b6354761ff990182ce5ad9a283a10 diff --git a/sci-libs/p4est/p4est-2.0.ebuild b/sci-libs/p4est/p4est-2.0.ebuild deleted file mode 100644 index 7f8e399758eb..000000000000 --- a/sci-libs/p4est/p4est-2.0.ebuild +++ /dev/null @@ -1,119 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -# The build system currently fails with everything newer than 1.11. -WANT_AUTOMAKE=1.11 - -inherit autotools toolchain-funcs eutils - -DESCRIPTION="Scalable Algorithms for Parallel Adaptive Mesh Refinement on Forests of Octrees" -HOMEPAGE="http://www.p4est.org/" - -if [[ ${PV} = *9999* ]]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/cburstedde/${PN}.git" - EGIT_BRANCH="develop" - SRC_URI="" - KEYWORDS="" -else - SRC_URI=" - https://github.com/cburstedde/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz - https://github.com/cburstedde/libsc/archive/v${PV}.tar.gz -> libsc-${PV}.tar.gz" - KEYWORDS="~amd64 ~x86" -fi - -LICENSE="GPL-2+" -SLOT="0" - -# TODO petsc -IUSE="debug doc examples mpi openmp romio static-libs threads +vtk-binary" -REQUIRED_USE="romio? ( mpi )" - -RDEPEND=" - ~sci-libs/libsc-${PV}[mpi=,openmp=,romio=,static-libs=,threads=] - dev-lang/lua:0= - sys-apps/util-linux - virtual/blas - virtual/lapack - mpi? ( virtual/mpi[romio=] )" - -DEPEND=" - ${RDEPEND} - sys-devel/automake:1.11 - virtual/pkgconfig" - -DOCS=( AUTHORS NEWS README ) - -pkg_pretend() { - if [[ ${MERGE_TYPE} != "binary" ]] && use openmp; then - tc-has-openmp || \ - die "Please select an openmp capable compiler like gcc[openmp]" - fi -} - -src_prepare() { - default - - # Inject libsc to get all parts of the build system... - if ! [[ ${PV} = *9999* ]]; then - rmdir "${S}/sc" || die "rmdir failed" - mv "${WORKDIR}/libsc-${PV}" "${S}/sc" || die "mv failed" - fi - - # Inject a version number into the build system - echo "${PV}" > ${S}/.tarball-version - - AT_M4DIR="${WORKDIR}/${P}/config ${WORKDIR}/${P}/sc/config" - eautoreconf - - sed -i \ - "s/P4EST_SC_DIR\/etc/P4EST_SC_DIR\/share\/libsc/" \ - "${S}"/configure || die "sed failed" - - sed -i \ - "s#lib/libsc\.la#$(get_libdir)/libsc\.so#" \ - "${S}"/configure || die "sed failed" -} - -src_configure() { - # avoid underlinkage - LDFLAGS="${LDFLAGS} -lsc" - - local myeconfargs=( - $(use_enable debug) - $(use_enable mpi) - $(use_enable openmp) - $(use_enable romio mpiio) - $(use_enable static-libs static) - $(use_enable threads pthread) - $(use_enable vtk-binary) - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" - --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" - --with-sc="${EPREFIX}/usr" - ) - econf "${myeconfargs[@]}" -} - -src_install() { - default - - use doc && dodoc -r doc/* - - if use examples - then - docinto examples - dodoc -r example/* - docompress -x /usr/share/doc/${PF}/examples - else - # Remove compiled example binaries in case of -examples: - rm -r "${ED}"/usr/bin || die "rm failed" - fi - - # Fix wrong installation paths: - dodir /usr/share/p4est - mv "${ED}"/usr/share/data "${ED}"/usr/share/p4est/data || die "mv failed" - mv "${ED}"/etc/* "${ED}"/usr/share/p4est || die "mv failed" - rmdir "${ED}"/etc/ || die "rmdir failed" -} diff --git a/sci-libs/pcl/Manifest b/sci-libs/pcl/Manifest index e7acdb9d4fc1..df568aed37e2 100644 --- a/sci-libs/pcl/Manifest +++ b/sci-libs/pcl/Manifest @@ -1,6 +1,4 @@ -DIST pcl-1.11.0.tar.gz 67091890 BLAKE2B 77dcaf99e19cd3042a01176e57441a38e7f5095d7bd9b08c9ad4464384eb6c603eab9734a6bcbb52eff9da55c3aaa69b3744a10137b8264e5729c2432a678f71 SHA512 1cde48349b2630d1bb89fa50b2844054802fe02d22c810516bc41a712823a26cd5fa1b14297718f517b88c371a637567b31fb8c4c9b4908e94fb3a7208095127 DIST pcl-1.11.1.tar.gz 68515312 BLAKE2B b6e8810861ca715acd9e97ad2b7d62ba9bf18b6a5ce3f13d7e2967f994ac39c42ba08aca83e1ae2186b986e4caf065d25d80d16d2c81a33838bde29326657e7a SHA512 93dd3180443a1a26f019bfd1e34855014619b3b74326ae93806a2711dba392b1c76f2aa682cc3955c651a45ce829a0c89d1cae7cef09cdea60fcb671aefe4da2 -EBUILD pcl-1.11.0.ebuild 2176 BLAKE2B 79157497c851103fb450aece2b4fa035da039b49af7b62ade76167e3b9ad381320f41cad6fe0180bc7bf01aeb7680bac3e380bc5e25ce73a25fb1fbaf2bc9c4f SHA512 d4cba0dd1cf25beb2ff96caf4d3b82378437bf490ef3c7a388ac94c81a6a8fc7dd501b776737b086464b0f5e44ccdc25fe4c4b10405aeaeebe0cff82c2a771e6 EBUILD pcl-1.11.1.ebuild 2176 BLAKE2B 79157497c851103fb450aece2b4fa035da039b49af7b62ade76167e3b9ad381320f41cad6fe0180bc7bf01aeb7680bac3e380bc5e25ce73a25fb1fbaf2bc9c4f SHA512 d4cba0dd1cf25beb2ff96caf4d3b82378437bf490ef3c7a388ac94c81a6a8fc7dd501b776737b086464b0f5e44ccdc25fe4c4b10405aeaeebe0cff82c2a771e6 EBUILD pcl-9999.ebuild 2176 BLAKE2B 79157497c851103fb450aece2b4fa035da039b49af7b62ade76167e3b9ad381320f41cad6fe0180bc7bf01aeb7680bac3e380bc5e25ce73a25fb1fbaf2bc9c4f SHA512 d4cba0dd1cf25beb2ff96caf4d3b82378437bf490ef3c7a388ac94c81a6a8fc7dd501b776737b086464b0f5e44ccdc25fe4c4b10405aeaeebe0cff82c2a771e6 MISC metadata.xml 1125 BLAKE2B 27e8b272d41bf690e99b28e7b9af140412e3d5641f56131c1c8ece113262f3222444a487a3e6a050fcf7fb8c8c404f284bc731780fa557d56241e0e0ad18613f SHA512 d5676bf63401993065215538dd0725f13a99251117e7e61cf9614ea765eb0b9388a8866aa74fb6840dba4ead49f763070076cd328c60ab0830ff11bee827e7cf diff --git a/sci-libs/pcl/pcl-1.11.0.ebuild b/sci-libs/pcl/pcl-1.11.0.ebuild deleted file mode 100644 index 4d7299fc43e6..000000000000 --- a/sci-libs/pcl/pcl-1.11.0.ebuild +++ /dev/null @@ -1,84 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -SCM="" -if [ "${PV#9999}" != "${PV}" ] ; then - SCM="git-r3" - EGIT_REPO_URI="https://github.com/PointCloudLibrary/pcl" -fi - -inherit ${SCM} cmake-utils multilib - -if [ "${PV#9999}" != "${PV}" ] ; then - KEYWORDS="" - SRC_URI="" -else - KEYWORDS="~amd64 ~arm" - SRC_URI="https://github.com/PointCloudLibrary/pcl/archive/${P}.tar.gz" - S="${WORKDIR}/${PN}-${P}" -fi - -HOMEPAGE="https://pointclouds.org/" -DESCRIPTION="2D/3D image and point cloud processing" -LICENSE="BSD" -SLOT="0/1.11" -IUSE="cuda doc opengl openni openni2 pcap png +qhull qt5 usb vtk cpu_flags_x86_sse test tutorials" -RESTRICT="!test? ( test )" - -RDEPEND=" - >=sci-libs/flann-1.7.1 - dev-libs/boost:=[threads] - dev-cpp/eigen:3 - opengl? ( virtual/opengl media-libs/freeglut ) - openni? ( dev-libs/OpenNI ) - openni2? ( dev-libs/OpenNI2 ) - pcap? ( net-libs/libpcap ) - png? ( media-libs/libpng:0= ) - qhull? ( media-libs/qhull:= ) - qt5? ( - dev-qt/qtgui:5 - dev-qt/qtcore:5 - dev-qt/qtconcurrent:5 - dev-qt/qtopengl:5 - ) - usb? ( virtual/libusb:1 ) - vtk? ( >=sci-libs/vtk-5.6:=[imaging,rendering] ) - cuda? ( >=dev-util/nvidia-cuda-toolkit-4 ) -" -DEPEND="${RDEPEND} - !!dev-cpp/metslib - test? ( >=dev-cpp/gtest-1.6.0 ) -" -BDEPEND=" - doc? ( app-doc/doxygen ) - tutorials? ( dev-python/sphinx dev-python/sphinxcontrib-doxylink ) - virtual/pkgconfig" - -REQUIRED_USE=" - openni? ( usb ) - openni2? ( usb ) - tutorials? ( doc ) -" - -src_configure() { - local mycmakeargs=( - "-DLIB_INSTALL_DIR=$(get_libdir)" - "-DWITH_CUDA=$(usex cuda TRUE FALSE)" - "-DWITH_LIBUSB=$(usex usb TRUE FALSE)" - "-DWITH_OPENGL=$(usex opengl TRUE FALSE)" - "-DWITH_PNG=$(usex png TRUE FALSE)" - "-DWITH_QHULL=$(usex qhull TRUE FALSE)" - "-DWITH_QT=$(usex qt5 TRUE FALSE)" - "-DWITH_VTK=$(usex vtk TRUE FALSE)" - "-DWITH_PCAP=$(usex pcap TRUE FALSE)" - "-DWITH_OPENNI=$(usex openni TRUE FALSE)" - "-DWITH_OPENNI2=$(usex openni2 TRUE FALSE)" - "-DPCL_ENABLE_SSE=$(usex cpu_flags_x86_sse TRUE FALSE)" - "-DWITH_DOCS=$(usex doc TRUE FALSE)" - "-DWITH_TUTORIALS=$(usex tutorials TRUE FALSE)" - "-DBUILD_TESTS=$(usex test TRUE FALSE)" - ) - cmake-utils_src_configure -} diff --git a/sci-libs/profphd-utils/Manifest b/sci-libs/profphd-utils/Manifest index 04424d45f596..4418a8171e50 100644 --- a/sci-libs/profphd-utils/Manifest +++ b/sci-libs/profphd-utils/Manifest @@ -1,4 +1,3 @@ DIST profphd-utils-1.0.10.tar.gz 388222 BLAKE2B 1985bb9b93a502911f0d3b5c7de9031d633f6060e9ae0b7531d248436b1dacf6f3462bab1bc127add341dc00a8200a88860197dd6515c1430395b840c44b98ca SHA512 c8a777e20bd721e53610ec28da01771300b06f3d284d40b0681ac0e38e8e0b3c7507e1aec7ddc627808d6ce7ccf8d3db94bf87449b958647e00a9c9d98a4300c EBUILD profphd-utils-1.0.10-r1.ebuild 570 BLAKE2B 6acb29b2d981d320297858f7ebd0c8fb629576a06f60f19d67d5561e285ba36daf3b5dcfbe939882ccdbec1ee44d45f8099079d8920e5c531e9042c000e88db7 SHA512 9066e8bb37c5b12ed8312e2807470657e63c6b054d3d0f96eb0e52a5fc70c57f836e1f56506ba64123df6c1eda816708f37231c35cd23364599fe027644c8fc8 -EBUILD profphd-utils-1.0.10.ebuild 566 BLAKE2B 94dbdc57855d26e69a71dff15fd1cfd6e7d34164d2d51a690ac4d655e3ab17f8c1cf92f26be7f1c17dc965f4ff880beec94f3f509ebacdb50a10ba23f194052e SHA512 319a94522a2d3a8e68aacc7413c3d0d77deb499a2cd29ee2d0bc3d953d36438bcac1a9f99169efd403dae79c331ce4cdad5dc9f2de9a8c4f6461b8d73871d541 MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-libs/profphd-utils/profphd-utils-1.0.10.ebuild b/sci-libs/profphd-utils/profphd-utils-1.0.10.ebuild deleted file mode 100644 index 49afe145c1e6..000000000000 --- a/sci-libs/profphd-utils/profphd-utils-1.0.10.ebuild +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit fortran-2 toolchain-funcs - -DESCRIPTION="Additional utils for profphd" -HOMEPAGE="https://rostlab.org/" -SRC_URI="ftp://rostlab.org/profphd-utils/${P}.tar.gz" - -SLOT="0" -LICENSE="GPL-3" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND="" -DEPEND="dev-lang/perl" - -src_compile() { - emake \ - F77=$(tc-getF77) \ - AM_FFLAGS="" -} - -src_install() { - emake \ - DESTDIR="${D}" \ - prefix="${EPREFIX}" \ - install - dodoc ChangeLog AUTHORS -} diff --git a/sci-libs/proj/Manifest b/sci-libs/proj/Manifest index bdba28f441d2..b51f26c3f3e7 100644 --- a/sci-libs/proj/Manifest +++ b/sci-libs/proj/Manifest @@ -1,7 +1,9 @@ DIST proj-7.0.1.tar.gz 5312488 BLAKE2B 421a3b5324ab7c952a8b45036e6db2c8cfc1fd2db3d050d2e644cb1c1c78fe669a20c6d8428debf75233a975a989e3ad2ce6a83cd944825641ffd3107cc44a02 SHA512 034d1b916980c80fe9f8e67d2897814e611920af3e852f152fcd9e3fc4ec8cbc39bbd8f8296949a3c3f5e6708bb9d84e61c4cba9c01476a3888448135e97dc33 DIST proj-7.1.1.tar.gz 5509592 BLAKE2B f745df3ef276b8a3213aff5ed92890f9c8f4b82a61a1e55fd013925befb018f01d7e60264dc996ea5aa9630b3ee3c149a7f37ca87d89c9df2f29367d4b26b19b SHA512 9f092318835006ffe864bb54ac456054196d30ff367546b41f1e49a5f1cc99a4b0b19e3d09c0ce7a336d1562df5784805560e7f725380411b1013a6baf90cf56 +DIST proj-7.2.1.tar.gz 5714666 BLAKE2B 9379ef758b1221b9487f162a27e7afa737e668ad7a13fc7adbd8e1e2c1c4699263d5d3105d03781b423f284205de3c79fc68850b9fba6aa05f1dc553b77b0842 SHA512 59b9b31b0183e620a2f4a25a08620c170773fe4f99e8eca59e9ed6815f43bb379ea21ef71e8f759dbd747855b982657d7503bac3acc542218e0d862105f25324 DIST proj-datumgrid-1.8.tar.gz 6604329 BLAKE2B 78df259a811a79457d011b4f675f1a72b6613928bb0083d01bfe65bb4c333628725b300efdb7cf10ebc6f26ff03733886c20f25c7aef80875e81e59bda9fd7d3 SHA512 23153f5b57d210e37cd6e9e0fced23bdabb1c67476e9fb50eb83a68ae066a5c3675822472f5d558d10ddf36ac1d73d538b75304d112a1bfcd8d0bbd26c6481a5 DIST proj-datumgrid-europe-1.6.tar.gz 189057258 BLAKE2B 66daf2341b05d8d5f929f6d67e1913656c2380a3663b4359cb97576ff5954dbea5890862869bb1077f6cde760dada4d9f13201c5b2c29ef3458a8b43089e459c SHA512 463d2575d5ce6f5984e69897c34ef80ec31a77f5ba00a07a5f55e97c3033dbae40b7d17891e5495bc47e6faf917968b1cdb7b3be9b2a4838e3b093b74753c2a8 EBUILD proj-7.0.1.ebuild 1208 BLAKE2B 9512e12fc93cbd4e17be6c8e3f222e7e1a62f5b73d7e1233bc7701c429f9d5877837a6eba03587a4e8bea26eaa921a4dd4686adf0412200e932de14b90878364 SHA512 9e6b0a2343b2cce7b0cb00063380f0df9012b746c56d9a7cf12b3c0f1d23bd53e0e3071c0e0b01b21d6a816de54ad52afb391a31ac2a1e83d02445c674d17bf8 EBUILD proj-7.1.1.ebuild 1213 BLAKE2B 96a64b1e5f39515d4caa5c7cbc46c01297b0220b6f85aa5dee6f52f4a69505fd3495d9a01aadb97f661a6d51709df523709dde99c1d12ecaed27abc8c91a06d8 SHA512 861d267b0f82d55223b569b1655af44c65d687d5f8a9c86e519f4bcbce17f6c9c7dab35a3ab9b51a7cb7b3690df1d001b9ec3dec4768301d44a6231540978cc9 +EBUILD proj-7.2.1.ebuild 1214 BLAKE2B fd5358ad509d0b3e53ba0154fd9b193f0a701bf1496ad83d81228f94ace8dff9d0e2c4ba8771209d1569f003bed944248dd495b4c4b950e1c5193cc0bec6c7cd SHA512 9b7d52c6b7f56286de4f6c37d45a517d69da7ae2af8df73a2d37a25e58772cd0c07badc422cd81b8cb6b1b103fab0a3a9777e6174869335c7785f96fec4b4343 MISC metadata.xml 374 BLAKE2B d6d3066273af3324fb5ebf6b0d3b0f49c4e78a88c7cbd7689e9d9ec6841033a03bb5f219c62be88320b2fee6c712079e54a5368125d7a33b301ae1263aec98e9 SHA512 34124c295beb66129e72963474508d26f1482919447bde9ed3af89f2123dffcf98037760aab2b589cc0a5dad23183fa0c28ecc3c4322a1ddfb926fb4ba52c8ad diff --git a/sci-libs/proj/proj-7.2.1.ebuild b/sci-libs/proj/proj-7.2.1.ebuild new file mode 100644 index 000000000000..1228ef8a650d --- /dev/null +++ b/sci-libs/proj/proj-7.2.1.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DATUMGRID="${PN}-datumgrid-1.8.tar.gz" +EUROPE_DATUMGRID="${PN}-datumgrid-europe-1.6.tar.gz" + +DESCRIPTION="PROJ coordinate transformation software" +HOMEPAGE="https://proj4.org/" +SRC_URI=" + https://download.osgeo.org/proj/${P}.tar.gz + https://download.osgeo.org/proj/${DATUMGRID} + europe? ( https://download.osgeo.org/proj/${EUROPE_DATUMGRID} ) +" + +LICENSE="MIT" +SLOT="0/19" +KEYWORDS="~amd64 ~arm ~arm64 ~ia64 ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos" +IUSE="curl europe static-libs test +tiff" +REQUIRED_USE="test? ( !europe )" + +RESTRICT="!test? ( test )" + +RDEPEND=" + dev-db/sqlite:3 + curl? ( net-misc/curl ) + tiff? ( media-libs/tiff ) +" +DEPEND="${RDEPEND}" + +src_unpack() { + unpack ${P}.tar.gz + cd "${S}"/data || die + mv README README.DATA || die + unpack ${DATUMGRID} + use europe && unpack ${EUROPE_DATUMGRID} +} + +src_configure() { + econf \ + $(use_with curl) \ + $(use_enable static-libs static) \ + $(use_enable tiff) +} + +src_install() { + default + cd data || die + dodoc README.{DATA,DATUMGRID} + use europe && dodoc README.EUROPE + find "${ED}" -name '*.la' -type f -delete || die +} diff --git a/sci-libs/qd/Manifest b/sci-libs/qd/Manifest index 838902fb72b9..022876b7b83b 100644 --- a/sci-libs/qd/Manifest +++ b/sci-libs/qd/Manifest @@ -1,7 +1,4 @@ -AUX qd-2.3.17-fix-build-system.patch 6245 BLAKE2B 8ab1ddc9ee18ad3c434e20716f3cfaaaf1ea5bf79d413ae640f12339a53c8583f85d1c38c10aef9d9c7b07439710a6bb811db3411768c25780acd56518e31993 SHA512 e7db957d3c2927062637a80644bb5d41739fe5ac31d1a2beb6bee62873d348e2675d720ed5c0a5a0b7d621053e299701724becac5ffeff8efc3d8aa5de339e53 AUX qd-2.3.22-fix-build-system.patch 6617 BLAKE2B 6712f53a1b46a4d1f74d45380330ff5b15b7f2216f61245d467748557f607f670fbb0d977f4e6455c93c383ef6eb466e243177d29a3227ba89cf34ec836c54d2 SHA512 e70d4b87342840fb63cab04e63ceddb790d5509f65188894cbedb077042e2dbb6e7e18a108589fb77e8ec6253ba6b70680f637ce30c62575aa4a0eb7fbed36ce -DIST qd-2.3.17.tar.gz 1445774 BLAKE2B f2af961db49747475a96dc0abecbcffcf88e43265b6ae21b4d6539ac7ce1086bb40e2cfd795dc9c78dd4b0f790a1a51c5b53d6bbfa224c5d3484d58a222c1872 SHA512 9c6f5dc8d5ad7c9c3d0ec626f7089eb760f31fb14b36daee9c6ba403ab146ff7ce99e01a8750960117a34d662c11620db2ec999e9cf44eb0f80e9224e365d496 DIST qd-2.3.22.tar.gz 1427456 BLAKE2B 628fb88b8cb105baa689380e4084cc2e327415674fcebca59721cc163e1043f39e48c1b2a2bdc68ba402d311f37e71c9e3c390a119515128e0296aa413c850d5 SHA512 2228b6ed019d1462939957d0d0f64ab2ecfa98ac5aefecf56e9dbcf0c6ed63bdd895b86019fbb0dfdbc22d047c4c2d4e42ff91ca18846b5c1bdaa1ad28a55c2b -EBUILD qd-2.3.17.ebuild 1110 BLAKE2B 194c20aea3517889f8ead218c3ff715141a21203a7b8754c062cdb408877cc90fcc5fc3d82860b0d1e9bc8f91558acf1413c90c46150345f0b61bcb0db21ef3f SHA512 ff3d0b75725368e08bba5488ae35f1aeb190ba43a07053fc0bea13789c6725c99e34b90a0b87bbc350ba439f1f1db4a15ea82413f5dae52b105d05ad3f25cd4d EBUILD qd-2.3.22.ebuild 1102 BLAKE2B aa7e8ba96034d3f1541be3bc4ce7cebb6c92af3107ad83fa55c30891280cd4842ae8eb31f2020af459fb5c71934d66f92fef83d4a08b586425b03f92e485af2c SHA512 6c8af78a2dc0c12957ff8e66745f31870c4eb43f831ca79fd96eed22d54f8b59c403156d14e6fe7d77fcfc51672e876a6e0e6ded9e1b6c95d8691a17d13efa9f MISC metadata.xml 259 BLAKE2B dfc879984b6adce945d0e0a50f6ede2bca87147b9db99491359cdeccc2e74a20d56e14ae8903dbb80c94854f89bee539f14a4e3ce864204e277accf3f124a748 SHA512 19fb78cf4029c154954a40df40e28fc8d98a8b7e6b42f97259f664d44c29b284feffb9d073cadc7f90b5654a64b2466e186cb677d3a11830206f173eb9057706 diff --git a/sci-libs/qd/files/qd-2.3.17-fix-build-system.patch b/sci-libs/qd/files/qd-2.3.17-fix-build-system.patch deleted file mode 100644 index 7fa3af79895d..000000000000 --- a/sci-libs/qd/files/qd-2.3.17-fix-build-system.patch +++ /dev/null @@ -1,179 +0,0 @@ -Fix build system -* --enable options were misspecified -* Targets were missing dependencies -* Disable setting CXXFLAGS - ---- a/configure.ac -+++ b/configure.ac -@@ -18,14 +18,14 @@ - - AC_CONFIG_AUX_DIR(config) - AM_INIT_AUTOMAKE([nostdinc]) --AM_CONFIG_HEADER([config.h]) --AM_CONFIG_HEADER([include/qd/qd_config.h]) -+AC_CONFIG_HEADERS([config.h]) -+AC_CONFIG_HEADERS([include/qd/qd_config.h]) - - AC_CANONICAL_HOST - - # Checks for arguments - # --enable-inline --AC_ARG_ENABLE(enable_inline, AC_HELP_STRING(--enable-inline, [inline commonly used functions. [[default=yes]]])) -+AC_ARG_ENABLE([inline], AS_HELP_STRING(--enable-inline, [inline commonly used functions. [[default=yes]]])) - AC_MSG_CHECKING([if commonly used function is to be inlined]) - if test "$enable_inline" != "no"; then - enable_inline="yes" -@@ -34,7 +34,7 @@ - AC_MSG_RESULT($enable_inline) - - # --enable-ieee-add --AC_ARG_ENABLE(enable_ieee_add, AC_HELP_STRING(--enable-ieee-add, [use addition that satisfies IEEE-style error bound instead of Cray-style error bound. [[default=no]]])) -+AC_ARG_ENABLE([ieee-add], AS_HELP_STRING(--enable-ieee-add, [use addition that satisfies IEEE-style error bound instead of Cray-style error bound. [[default=no]]])) - AC_MSG_CHECKING([if addition with IEEE-style error bound is to be used]) - if test "$enable_ieee_add" = "yes"; then - AC_DEFINE([QD_IEEE_ADD], [1], [Define to 1 to use additions with IEEE-style error bounds.]) -@@ -44,7 +44,7 @@ - AC_MSG_RESULT($enable_ieee_add) - - # --enable-sloppy-mul --AC_ARG_ENABLE(enable_sloppy_mul, AC_HELP_STRING(--enable-sloppy-mul, [use fast but slightly inaccurate multiplication. [[default=yes]]])) -+AC_ARG_ENABLE([sloppy-mul], AS_HELP_STRING(--enable-sloppy-mul, [use fast but slightly inaccurate multiplication. [[default=yes]]])) - AC_MSG_CHECKING([if sloppy multiplication is to be used]) - if test "$enable_sloppy_mul" != "no"; then - enable_sloppy_mul="yes" -@@ -53,7 +53,7 @@ - AC_MSG_RESULT($enable_sloppy_mul) - - # --enable-sloppy-div --AC_ARG_ENABLE(enable_sloppy_div, AC_HELP_STRING(--enable-sloppy-div, [use fast but slightly inaccurate division. [[default=yes]]])) -+AC_ARG_ENABLE([sloppy-div], AS_HELP_STRING(--enable-sloppy-div, [use fast but slightly inaccurate division. [[default=yes]]])) - AC_MSG_CHECKING([if sloppy division is to be used]) - if test "$enable_sloppy_div" != "no"; then - enable_sloppy_div="yes" -@@ -63,7 +63,7 @@ - - - # --enable-debug --AC_ARG_ENABLE(enable_debug, AC_HELP_STRING(--enable-debug, [enable debugging code. [[default=no]]])) -+AC_ARG_ENABLE([debug], AS_HELP_STRING(--enable-debug, [enable debugging code. [[default=no]]])) - AC_MSG_CHECKING([if debugging code is to be enabled]) - if test "$enable_debug" = "yes"; then - AC_DEFINE([QD_DEBUG], [1], [Define to 1 to enable debugging code.]) -@@ -73,7 +73,7 @@ - AC_MSG_RESULT($enable_debug) - - # --enable-warnings --AC_ARG_ENABLE(enable_warnings, AC_HELP_STRING(--enable-warnings, [enable compiler warnings. [[default=no]]])) -+AC_ARG_ENABLE([warnings], AS_HELP_STRING(--enable-warnings, [enable compiler warnings. [[default=no]]])) - AC_MSG_CHECKING([if compiler warnings is to be enabled]) - if test "$enable_warnings" != "yes"; then - enable_warnings="no" -@@ -83,13 +83,6 @@ - - # Checks for programs. - AC_LANG(C++) --if test "$CXXFLAGS" = ""; then -- if test "$enable_debug" = "yes"; then -- CXXFLAGS="-O" -- else -- CXXFLAGS="-O2" -- fi --fi - - # Set up compiler search list. DUe to possible case insensitive filesystems, - # Cygwin and Apple systems sometimes gets confused between cc and CC. -@@ -106,50 +99,10 @@ - fi - AC_PROG_CC - -- --CXX_PROG_NAME=`basename $CXX` --case $host in -- powerpc*-*-*) -- case "$CXX_PROG_NAME" in -- xlC*) -- REQ_CXXFLAGS="$REQ_CXXFLAGS -qstrict" -- ;; -- esac -- ;; -- i?86-*-* | k?*-*-* | athlon-*-* | ia64-*-* | x86_64-*-*) -- case "$CXX_PROG_NAME" in -- icc|icpc|ecc) -- REQ_CXXFLAGS="$REQ_CXXFLAGS -mp" -- if test "$enable_warnings" = "yes"; then -- CXXFLAGS="$CXXFLAGS -wd1572 -wd981 -wd1418 -wd1419" -- fi -- ;; -- esac -- ;; -- alpha*-*-*) -- case "$CXX_PROG_NAME" in -- cxx) -- CXXFLAGS="$CXXFLAGS -std strict_ansi -tweak" -- ;; -- esac -- ;; --esac -- --AC_SUBST(REQ_CXXFLAGS) --CXXFLAGS="$CXXFLAGS $REQ_CXXFLAGS" -- --if test "$enable_warnings" = "yes"; then -- if test "$GCC" = "yes"; then -- CXXFLAGS="$CXXFLAGS -Wall" -- fi --fi -- --if test "$enable_debug" = "yes"; then -- CXXFLAGS="$CXXFLAGS -g" --fi -+CXXFLAGS="${CXXFLAGS} -Wall" - - # --enable-fma --AC_ARG_ENABLE(enable_fma, AC_HELP_STRING(--enable-fma, [use fused multiply-add/subtract (auto,gnu,ia64,c99,ibm,compiler). Use this option with care. [[default=auto]]])) -+AC_ARG_ENABLE([fma], AS_HELP_STRING(--enable-fma, [use fused multiply-add/subtract (auto,gnu,ia64,c99,ibm,compiler). Use this option with care. [[default=auto]]])) - if test "x$enable_fma" = "x"; then - enable_fma="auto" - fi -@@ -248,7 +201,7 @@ - FCFLAGS="-O2" - fi - fi --AC_ARG_ENABLE(enable_fortran, AC_HELP_STRING(--enable-fortran, [build Fortran 77/90 interfaces [[default=auto]]])) -+AC_ARG_ENABLE([fortran], AS_HELP_STRING(--enable-fortran, [build Fortran 77/90 interfaces [[default=auto]]])) - if test "$enable_fortran" != "no"; then - AC_LANG_PUSH(Fortran) - AC_PROG_FC([xlf95 ifort pathf95 f95 gfortran g95 pgf95 lf95 fort ifc efc pathf90 xlf90 pgf90 epcf90 xlf f90]) -@@ -312,8 +265,7 @@ - AC_CHECK_LIB(m,sqrt) - - # libtool stuff --AC_DISABLE_SHARED --AC_PROG_LIBTOOL -+LT_INIT - - # Output - AC_CONFIG_FILES([Makefile config/Makefile src/Makefile include/Makefile ---- a/fortran/Makefile.am -+++ b/fortran/Makefile.am -@@ -16,7 +16,9 @@ - - lib_LTLIBRARIES = libqdmod.la libqd_f_main.la - libqdmod_la_SOURCES = ddext.f ddmod.f qdext.f qdmod.f f_dd.cpp f_qd.cpp -+libqdmod_la_LIBADD = $(top_builddir)/src/libqd.la $(FCLIBS) - libqd_f_main_la_SOURCES = main.cpp -+libqd_f_main_la_LIBADD = $(top_builddir)/src/libqd.la libqdmod.la $(FCLIBS) - ddmod.lo: $(DDEXT) ddext.lo - qdmod.lo: ddmod.lo $(DDMOD) qdext.lo - $(QDMOD): qdmod.lo $(DDMOD) ---- a/qd-config.in -+++ b/qd-config.in -@@ -14,7 +14,7 @@ - build_CXXFLAGS="@CXXFLAGS@" - build_LDFLAGS="@LDFLAGS@" - CXX="@CXX@" --CXXFLAGS="-I$includedir @REQ_CXXFLAGS@" -+CXXFLAGS="-I$includedir" - FC="@FC@" - - LDFLAGS="-L$libdir -lqd @LIBS@" diff --git a/sci-libs/qd/qd-2.3.17.ebuild b/sci-libs/qd/qd-2.3.17.ebuild deleted file mode 100644 index 2e7467e99c79..000000000000 --- a/sci-libs/qd/qd-2.3.17.ebuild +++ /dev/null @@ -1,51 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit autotools fortran-2 - -DESCRIPTION="Quad-double and double-double float arithmetics" -HOMEPAGE="https://www.davidhbailey.com/dhbsoftware/" -SRC_URI="http://crd.lbl.gov/~dhbailey/mpdist/${P}.tar.gz" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="cpu_flags_x86_fma3 cpu_flags_x86_fma4 doc fortran static-libs" - -PATCHES=( "${FILESDIR}"/${PN}-2.3.17-fix-build-system.patch ) - -src_prepare() { - default - eautoreconf -} - -src_configure() { - econf \ - --disable-ieee-add \ - --disable-sloppy-mul \ - --disable-sloppy-div \ - --enable-inline \ - --enable-shared \ - $(use_enable static-libs static) \ - $(use_enable cpu_flags_x86_fma$(usex cpu_flags_x86_fma3 3 4) fma) \ - $(use_enable fortran) -} - -src_install() { - default - - dosym qd_real.h /usr/include/qd/qd.h - dosym dd_real.h /usr/include/qd/dd.h - - if ! use doc; then - rm "${ED%/}"/usr/share/doc/${PF}/*.pdf || die - fi - - if ! use static-libs; then - find "${D}" -name '*.la' -delete || die - fi -} diff --git a/sci-libs/scalapack/Manifest b/sci-libs/scalapack/Manifest index c852c1861722..dc024bb625f4 100644 --- a/sci-libs/scalapack/Manifest +++ b/sci-libs/scalapack/Manifest @@ -1,7 +1,4 @@ -AUX scalapack-2.0.2-libdir.patch 2159 BLAKE2B e96c845a6e841b8a432268b76755d92158ef880cff11b8925c82651cb2fda736e60da94ea075b44eff9f7a0e00854ac81308d762523351b68b66a782e131aa3a SHA512 40fa841fe31c6665eab09065eed8f5aed8ed48a8e2211ee5fd9365c5c101a2d7167c9d084628ee5f5a26475599a210c4011ce4a207c8df677cf72a67b6a26cac -DIST scalapack-2.0.2.tgz 4779534 BLAKE2B c2aabd87bc8f7c0d9af31bd8ad8c933703dcbba399658d15c1e5256da2350c1a0feac2ca4a205f697b1c48083df89cbcd64ba432da036081c0f33d5d2acddc9b SHA512 92c71d3de0900955511c527ab3ca57ff69d6d9edc390e69f93ac3769d32ce83a714326bcb6218c8c74b8874be2fdc8aad5e42c912a12581e8d4ce8829ea39248 DIST scalapack-2.1.0-gcc10.patch 231026 BLAKE2B dacecca8307cd2bf7a20e6453fb17bc1f5a3f2926b6d8f3b89f7f8d34993368574804f0427f228de4525f2b2d73105de561588ba5a4d2fb609d5ed035f51ddc9 SHA512 a11057599639c167e907f8e4d45204174fd326e2ffb9e2d05533db23d8e2dd8cfc1d37f06d5502baa3d5714092fbf4638cf4d9fea84ca9d4fb150e21cc57861e DIST scalapack-2.1.0.tgz 5307441 BLAKE2B 4aea055fc3e437bce7108d1555e93c50109bcfe84354903fd711509eedbe686349fda4030e2fa70faf1a9e7e3255e46e48c32b96a2916af6812b8aebceb750c2 SHA512 0e77fb535ebcc28e2d97499ef4bd5161f76ca0ba4a3e308c26ce5071cfc4be4f3814262f3fb38f378ce0b5b31c0913432fea00a1e9e3f7717b853d1182bdf5b4 -EBUILD scalapack-2.0.2-r1.ebuild 1650 BLAKE2B 994af8b82c1dd33292d34efd80394f8f641eec7d3735629c548c0a133943f56ad78582a2c21a7690f27577e3051800a454ce6bb0b3381bf43c792fa303dc184d SHA512 4a9e044a73dfe07273d4e5f5fab01895cb18e3e20ccbd077540571f75442e438ff8fa9e62259d085f1dd63f3901e2879366f9b1e2c28e409bf8c1d0d5f248897 EBUILD scalapack-2.1.0.ebuild 1783 BLAKE2B 98ef942f36facb4a84b3f4fa1a647a56019adae7edf311c6e6eb2419c39023dd300ab120b232478b24258c41a4eeb8022ee99ed1da429ea303c0f4db79ba35b4 SHA512 98f4d5285de042f68443e086f998c8e415040901b54922437078f92eeae21dc3f9448d98e7d57ba4f6254f265863145d541d90d69668978b15ec00eb50937aaf MISC metadata.xml 662 BLAKE2B aacea4e0ad09d68f6d953ba2eeac01ffe9660d389271be5335686b2f2d1000ddc79e0a7f24e506749d57f5e6adc3c7f1f82f3d758fe1d62145dea29d5dcc05f4 SHA512 90820c7f860bfabd8b057277a967bffac6af9d12c334a5813ea4fc75cbdf90d63e5e8d8ec04d5c28e819785dafbbe698ca8e5933f97102c1369727a8a9eaa5b0 diff --git a/sci-libs/scalapack/files/scalapack-2.0.2-libdir.patch b/sci-libs/scalapack/files/scalapack-2.0.2-libdir.patch deleted file mode 100644 index a1604a8fd856..000000000000 --- a/sci-libs/scalapack/files/scalapack-2.0.2-libdir.patch +++ /dev/null @@ -1,45 +0,0 @@ ---- a/CMakeLists.txt 2012-05-02 05:58:24.000000000 +0200 -+++ b/CMakeLists.txt 2018-10-15 23:57:22.716171671 +0200 -@@ -101,8 +101,8 @@ - # Organize output files. On Windows this also keeps .dll files next - # to the .exe files that need them, making tests easy to run. - set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${SCALAPACK_BINARY_DIR}/TESTING) --set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${SCALAPACK_BINARY_DIR}/lib) --set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${SCALAPACK_BINARY_DIR}/lib) -+set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${SCALAPACK_BINARY_DIR}/lib${LIB_SUFFIX}) -+set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${SCALAPACK_BINARY_DIR}/lib${LIB_SUFFIX}) - - # -------------------------------------------------- - # Check for any necessary platform specific compiler flags -@@ -163,8 +163,8 @@ - PREFIX ${SCALAPACK_BINARY_DIR}/dependencies - ) - if (UNIX) -- SET(LAPACK_LIBRARIES ${SCALAPACK_BINARY_DIR}/lib/liblapack.a CACHE STRING "LAPACK library" FORCE) -- SET(BLAS_LIBRARIES ${SCALAPACK_BINARY_DIR}/lib/libblas.a CACHE STRING "BLAS library" FORCE) -+ SET(LAPACK_LIBRARIES ${SCALAPACK_BINARY_DIR}/lib${LIB_SUFFIX}/liblapack.a CACHE STRING "LAPACK library" FORCE) -+ SET(BLAS_LIBRARIES ${SCALAPACK_BINARY_DIR}/lib${LIB_SUFFIX}/libblas.a CACHE STRING "BLAS library" FORCE) - else (UNIX) # On Windows - SET(LAPACK_LIBRARIES ${SCALAPACK_BINARY_DIR}/lib/liblapack.lib CACHE STRING "LAPACK library" FORCE) - SET(BLAS_LIBRARIES ${SCALAPACK_BINARY_DIR}/lib/libblas.lib CACHE STRING "BLAS library" FORCE) -@@ -283,7 +283,7 @@ - if( NOT LAPACK_FOUND ) - install(FILES - ${BLAS_LIBRARIES} ${LAPACK_LIBRARIES} -- DESTINATION lib -+ DESTINATION lib${LIB_SUFFIX} - ) - endif( NOT LAPACK_FOUND ) - -@@ -303,9 +303,9 @@ - install(FILES - ${SCALAPACK_BINARY_DIR}/CMakeFiles/scalapack-config.cmake - ${SCALAPACK_BINARY_DIR}/scalapack-config-version.cmake -- DESTINATION lib/cmake/scalapack-${SCALAPACK_VERSION} -+ DESTINATION lib${LIB_SUFFIX}/cmake/scalapack-${SCALAPACK_VERSION} - ) - - install(EXPORT scalapack-targets -- DESTINATION lib/cmake/scalapack-${SCALAPACK_VERSION}) -+ DESTINATION lib${LIB_SUFFIX}/cmake/scalapack-${SCALAPACK_VERSION}) - diff --git a/sci-libs/scalapack/scalapack-2.0.2-r1.ebuild b/sci-libs/scalapack/scalapack-2.0.2-r1.ebuild deleted file mode 100644 index 7f9fbd15720e..000000000000 --- a/sci-libs/scalapack/scalapack-2.0.2-r1.ebuild +++ /dev/null @@ -1,70 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils fortran-2 toolchain-funcs - -DESCRIPTION="Subset of LAPACK routines redesigned for heterogenous (MPI) computing" -HOMEPAGE="https://www.netlib.org/scalapack/" -SRC_URI="https://www.netlib.org/scalapack/${P}.tgz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="static-libs test" -RESTRICT="!test? ( test )" - -RDEPEND=" - virtual/lapack - virtual/mpi" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -PATCHES=( "${FILESDIR}/${P}-libdir.patch" ) - -src_prepare() { - cmake-utils_src_prepare - - if use static-libs; then - mkdir "${WORKDIR}/${PN}_static" || die - fi - # mpi does not have a pc file - sed -i -e 's/mpi//' scalapack.pc.in || die -} - -src_configure() { - scalapack_configure() { - local mycmakeargs=( - -DUSE_OPTIMIZED_LAPACK_BLAS=ON - -DBLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas)" - -DLAPACK_LIBRARIES="$($(tc-getPKG_CONFIG) --libs lapack)" - -DBUILD_TESTING=$(usex test) - $@ - ) - cmake-utils_src_configure - } - - scalapack_configure -DBUILD_SHARED_LIBS=ON -DBUILD_STATIC_LIBS=OFF - use static-libs && \ - CMAKE_BUILD_DIR="${WORKDIR}/${PN}_static" scalapack_configure \ - -DBUILD_SHARED_LIBS=OFF -DBUILD_STATIC_LIBS=ON -} - -src_compile() { - cmake-utils_src_compile - use static-libs && \ - CMAKE_BUILD_DIR="${WORKDIR}/${PN}_static" cmake-utils_src_compile -} - -src_install() { - cmake-utils_src_install - use static-libs && \ - CMAKE_BUILD_DIR="${WORKDIR}/${PN}_static" cmake-utils_src_install - - insinto /usr/include/blacs - doins BLACS/SRC/*.h - - insinto /usr/include/scalapack - doins PBLAS/SRC/*.h -} diff --git a/sci-libs/shapely/Manifest b/sci-libs/shapely/Manifest index be3d0db03bb6..801097a3d181 100644 --- a/sci-libs/shapely/Manifest +++ b/sci-libs/shapely/Manifest @@ -1,8 +1,3 @@ -AUX shapely-1.6.4_p2-test_operations.patch 722 BLAKE2B 661659bc1d2f8c8a5d6b77f0ca746024aa9724f2c25047d8203d591a4f793982d4cf9bebaa6abcaf48c0cf1b266ef941b986897d26bece39519f8fcaf5dcaf96 SHA512 c1e9eda0cf8dbfbcee2d6994f470559507c754fa2bf03973ac692ca6bd2fcf62ce05e15116515877e8900a89c55c6b2bf6e70b74e2cfced8d3852608901b34db -DIST Shapely-1.6.4.post2.tar.gz 225745 BLAKE2B 96e995db6dd1464bac7c2562efdc7f298a5f23c388e44f334db685b1cfa1025ff403db870e11328977a267483726504e03b6d7c47fe4234a3a5966a13b2b7311 SHA512 027c816ef2104f654569ca658b52b87c60e5ba6a45927fcc51c23dd1922f3f9f7fdcea3601160b0a999e39611617142833ccac790777093be8b96a0d9083f78f -DIST shapely-1.7.0.tar.gz 281419 BLAKE2B 1a4e84104f21d2f5a5eb810883a89deb20fd47cf146efed884994786364b29bb5a194b063a50ae21842c07c335cbbee0c3d1a1e4ff4e43e0d083080fe33815ac SHA512 4d944fc6727e11d004ef7ba0325c159aa5ae03043f17b029ab0a399d6dcd361c4d299ad864a045a99b0229e333d5b42634bc6fd1ed94b914b7cf58fb886af2de DIST shapely-1.7.1.tar.gz 293368 BLAKE2B 14d9cb0c2b486a3a20b71c0cde7260ec357287ea020352c0320eea07b91674605bdcd22512b33c5ac5a71b89c3d811946f8dd6d3b90c61398203a4c68f30d067 SHA512 72070437960a8c1cf6504b5f4ccc8ec509f87fb6a90178e291aff14889f5add89f9ed4f7e9a19799ce0835c1aea3f0241eaa6efd4d8ea5b879f2167f7c1de50a -EBUILD shapely-1.6.4_p2-r1.ebuild 1261 BLAKE2B 642299e5826a038c523a5bced181f9bbfedccd6cc09f9e7420ff8182f425ea94e54989fb595659a2e8a25054e40c80ea0ea1621d198e986b83432faf54e8edad SHA512 5a2df29e69ed543ee8bdcf3a9b972769a95000be8948ee2e08f0ed86d867b41eb4713d8137bbc9add0af9f888791c7a6d67e9e025374b867d7df3356b3ca7557 -EBUILD shapely-1.7.0.ebuild 841 BLAKE2B 215c6b3cbef150d7de204c0537962c68851578404ae0aeac37ee7339e74fdec6e4559dcb776c45be83eb56093f6b822ce41978132291495d98b892746388cac4 SHA512 4e19ff01ef50b6ce96a70052725d1bbf57f39d46d3305c9ac5fb12bec0581abf3c009ee2daae636ae3c57ae4ab35a70c08bf71d50fe5e0e9774fec5f59fe86ff EBUILD shapely-1.7.1.ebuild 839 BLAKE2B cdff940dce5acbd360bb81467475bdf7bd95d512f23c45c9bc7604c6769d56f5e111e0c6a830ab3c79ef84b17fe9878eb424ddd56b62588a80cb18115b68af2e SHA512 407d39827d32b759fc7944195bed880243424374555471a283700c47426e39ab3ec57ec6808e41b9670f1783f580f19737c0aeb12ca2f39da1ef32bf6e17e0e5 MISC metadata.xml 783 BLAKE2B 365db96ce9bd755cd3c080f84883666ceb74d1b78a5a0692552f53a6a5b5dd468c973857f0d0e860ffc6a78c623518e6bd781682118ff0d1e355fca68bdc861c SHA512 e97b0011a6581773ddc9b13879517f2295c850822f267dc3af34b4dae0683f3e0e3b60900b2cf6206084da7bc32561e42f64e7c3709461a40305bf821667450b diff --git a/sci-libs/shapely/files/shapely-1.6.4_p2-test_operations.patch b/sci-libs/shapely/files/shapely-1.6.4_p2-test_operations.patch deleted file mode 100644 index a9213a333765..000000000000 --- a/sci-libs/shapely/files/shapely-1.6.4_p2-test_operations.patch +++ /dev/null @@ -1,17 +0,0 @@ -Description: Mark test_operations as xfail. - # Intersection - > self.assertIsInstance(point.intersection(Point(-1, -1)), - GeometryCollection) - E AssertionError: <shapely.geometry.point.Point object at 0xffffb6e2c250> is not an instance of <class 'shapely.geometry.collection.GeometryCollection'> -Author: Bas Couwenberg <sebastic@debian.org> - ---- a/tests/test_operations.py -+++ b/tests/test_operations.py -@@ -7,6 +7,7 @@ from shapely.geos import TopologicalErro - - class OperationsTestCase(unittest.TestCase): - -+ @pytest.mark.xfail(reason="Intersection: Point is not an instance of GeometryCollection") - def test_operations(self): - point = Point(0.0, 0.0) - diff --git a/sci-libs/shapely/shapely-1.6.4_p2-r1.ebuild b/sci-libs/shapely/shapely-1.6.4_p2-r1.ebuild deleted file mode 100644 index be793427c4b7..000000000000 --- a/sci-libs/shapely/shapely-1.6.4_p2-r1.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -MY_PN="Shapely" -MY_PV="$(ver_cut 1-3).post$(ver_cut 5)" -MY_P="${MY_PN}-${MY_PV}" - -PYTHON_COMPAT=( python3_{6,7,8} ) - -inherit distutils-r1 - -DESCRIPTION="Geometric objects, predicates, and operations" -HOMEPAGE="https://pypi.org/project/Shapely/" - -if [[ ${PV} == "9999" ]] ; then - inherit git-r3 - SRC_URI="" - EGIT_REPO_URI="https://github.com/Toblerity/${MY_PN}.git" -else - SRC_URI="mirror://pypi/${PN:0:1}/${MY_P}.tar.gz" - KEYWORDS="amd64 ~arm64 x86" -fi - -LICENSE="BSD" -SLOT="0" -IUSE="test" - -BDEPEND="dev-python/setuptools[${PYTHON_USEDEP}] - test? ( dev-python/pytest[${PYTHON_USEDEP}] )" -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}] - >=sci-libs/geos-3.3" -DEPEND="${RDEPEND} - dev-python/cython[${PYTHON_USEDEP}]" - -RESTRICT="!test? ( test )" - -PATCHES=( "${FILESDIR}/${P}-test_operations.patch" ) # bug 701624 - -S="${WORKDIR}/${MY_P}" - -python_prepare_all() { - # fix install path for Cython definition file - sed -i \ - -e "s|\(data_files.*\)'shapely'|\1'share/shapely'|" \ - setup.py || die - - distutils-r1_python_prepare_all -} - -python_test() { - distutils_install_for_testing - cd "${TEST_DIR}/lib" || die - cp -r "${S}/tests" . || die - py.test tests || die -} diff --git a/sci-libs/shapely/shapely-1.7.0.ebuild b/sci-libs/shapely/shapely-1.7.0.ebuild deleted file mode 100644 index 3e2d10095cec..000000000000 --- a/sci-libs/shapely/shapely-1.7.0.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -MY_PN="Shapely" -MY_P="${MY_PN}-${PV}" - -PYTHON_COMPAT=( python3_{7..8} ) - -inherit distutils-r1 - -DESCRIPTION="Geometric objects, predicates, and operations" -HOMEPAGE="https://pypi.org/project/Shapely/ https://github.com/Toblerity/Shapely" -SRC_URI="https://github.com/Toblerity/Shapely/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~arm64 ~x86" - -RDEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - >=sci-libs/geos-3.3 -" - -BDEPEND="${RDEPEND} - dev-python/cython[${PYTHON_USEDEP}] -" - -S="${WORKDIR}/${MY_P}" - -distutils_enable_tests pytest - -distutils_enable_sphinx docs dev-python/matplotlib - -python_test() { - distutils_install_for_testing - ${EPYTHON} -m pytest tests || die "tests failed under ${EPYTHON}" -} diff --git a/sci-libs/sundials/Manifest b/sci-libs/sundials/Manifest index 466a0886e563..36b6cd67110e 100644 --- a/sci-libs/sundials/Manifest +++ b/sci-libs/sundials/Manifest @@ -1,19 +1,7 @@ AUX sundials-3.2.1-fix-license-install-path.patch 335 BLAKE2B ac9a2c33fabf13cb55876f39836006b1b145395311800bd052f5e0784b7926fab4ffd4abf2bb0047d69fbd5feccdec026bf7f7c115fb4f130c8419c6e8986dcb SHA512 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f1788b29f519eb1af18c2e2409e14bbce54e96b69144d9267840b9a9678c4fb6039dd44f03af987fb207498e23d631b4f689de0427bb77e8ef0eae6fdc360bdd -EBUILD sundials-5.1.0.ebuild 2067 BLAKE2B 9f3324ddf9158af16d2489ac656a660859f80470077afaa59f0758b2f1c936110701d29bf24c482261055fc43c7b8b3e9bf7497137bacc2b3d487d87034418ca SHA512 2c1d0f672ca0c2a3b5da077557665b9f481cc9a3c8b5bc5f96e59c8cfcd05d5f9956afd2f367ffc141467961642b39d8443ffbe166850280fb12a8a0d05a0e41 EBUILD sundials-5.2.0.ebuild 2090 BLAKE2B a02305f8d4c2cd72d2bac2cbceb687f3b87e5067cfc06cd6501d83da25e51081c95dabd4831bff0b16010298eb66f042cc0602307071e0c31b5ddd802fc515de SHA512 ace0de38a616892fa1dc9d91ec7dbd37a2278d7418345f4e7bdb61f455ca79a83e1e4a4c8dcea832cd7e1877590a02faf24f210e1369ce810a16f80904116cf8 MISC metadata.xml 1059 BLAKE2B 48ccadfac9b7ea4203334ffdadaa76ab3164273835c727e76085db3a5afc179404eb21c74aad77ceb368397377afb0efa27d798c849eab2ffc35153cd4fe7588 SHA512 47da8b9edc993c480a045642ad2746ff6180e54e1ad368823fd81b0d217e72c31394d7575cb4c2d5e5cfea065dffb01751bc8b1088f0f1a6feaaea15c2c7fb8f diff --git a/sci-libs/sundials/files/sundials-4.0.2-fix-license-install-path.patch b/sci-libs/sundials/files/sundials-4.0.2-fix-license-install-path.patch deleted file mode 100644 index fbcf53c410cf..000000000000 --- a/sci-libs/sundials/files/sundials-4.0.2-fix-license-install-path.patch +++ /dev/null @@ -1,16 +0,0 @@ -diff -Nur old/CMakeLists.txt new/CMakeLists.txt ---- old/CMakeLists.txt 2019-01-23 01:05:44.000000000 +0300 -+++ new/CMakeLists.txt 2019-06-23 00:35:57.000000000 +0300 -@@ -1210,10 +1210,10 @@ - # install license and notice files - INSTALL( - FILES ${PROJECT_SOURCE_DIR}/LICENSE -- DESTINATION include/sundials -+ DESTINATION share/doc/sundials-4.0.2 - ) - INSTALL( - FILES ${PROJECT_SOURCE_DIR}/NOTICE -- DESTINATION include/sundials -+ DESTINATION share/doc/sundials-4.0.2 - ) - diff --git a/sci-libs/sundials/files/sundials-4.1.0-fix-license-install-path.patch b/sci-libs/sundials/files/sundials-4.1.0-fix-license-install-path.patch deleted file mode 100644 index 6eb75ce59cff..000000000000 --- a/sci-libs/sundials/files/sundials-4.1.0-fix-license-install-path.patch +++ /dev/null @@ -1,16 +0,0 @@ -diff -Nur old/CMakeLists.txt new/CMakeLists.txt ---- old/CMakeLists.txt 2019-02-12 21:50:51.000000000 +0300 -+++ new/CMakeLists.txt 2019-06-23 00:39:23.000000000 +0300 -@@ -1168,10 +1168,10 @@ - # install license and notice files - INSTALL( - FILES ${PROJECT_SOURCE_DIR}/LICENSE -- DESTINATION include/sundials -+ DESTINATION share/doc/sundials-4.1.0 - ) - INSTALL( - FILES ${PROJECT_SOURCE_DIR}/NOTICE -- DESTINATION include/sundials -+ DESTINATION share/doc/sundials-4.1.0 - ) - diff --git a/sci-libs/sundials/files/sundials-5.0.0-fix-license-install-path.patch b/sci-libs/sundials/files/sundials-5.0.0-fix-license-install-path.patch deleted file mode 100644 index 5de76573630a..000000000000 --- a/sci-libs/sundials/files/sundials-5.0.0-fix-license-install-path.patch +++ /dev/null @@ -1,16 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index d5436bf..76b27c5 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -1122,9 +1122,9 @@ endif() - # install license and notice files - install( - FILES ${PROJECT_SOURCE_DIR}/LICENSE -- DESTINATION include/sundials -+ DESTINATION share/doc/sundials-5.0.0 - ) - install( - FILES ${PROJECT_SOURCE_DIR}/NOTICE -- DESTINATION include/sundials -+ DESTINATION share/doc/sundials-5.0.0 - ) diff --git a/sci-libs/sundials/files/sundials-5.1.0-fix-license-install-path.patch b/sci-libs/sundials/files/sundials-5.1.0-fix-license-install-path.patch deleted file mode 100644 index 48b019611cb2..000000000000 --- a/sci-libs/sundials/files/sundials-5.1.0-fix-license-install-path.patch +++ /dev/null @@ -1,16 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index d5436bf..76b27c5 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -1146,9 +1146,9 @@ endif() - # install license and notice files - install( - FILES ${PROJECT_SOURCE_DIR}/LICENSE -- DESTINATION include/sundials -+ DESTINATION share/doc/sundials-5.1.0 - ) - install( - FILES ${PROJECT_SOURCE_DIR}/NOTICE -- DESTINATION include/sundials -+ DESTINATION share/doc/sundials-5.1.0 - ) diff --git a/sci-libs/sundials/sundials-4.0.2.ebuild b/sci-libs/sundials/sundials-4.0.2.ebuild deleted file mode 100644 index 54f396b21f78..000000000000 --- a/sci-libs/sundials/sundials-4.0.2.ebuild +++ /dev/null @@ -1,73 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -CMAKE_MAKEFILE_GENERATOR="emake" -FORTRAN_NEEDED=fortran -FORTRAN_STANDARD=90 - -inherit cmake-utils toolchain-funcs fortran-2 - -DESCRIPTION="Suite of nonlinear solvers" -HOMEPAGE="https://computation.llnl.gov/projects/sundials" -SRC_URI="https://computation.llnl.gov/projects/sundials/download/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0/$(ver_cut 1)" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="cxx doc examples fortran hypre lapack mpi openmp sparse static-libs superlumt threads" -REQUIRED_USE="hypre? ( mpi )" - -RDEPEND=" - lapack? ( virtual/lapack ) - mpi? ( virtual/mpi sci-libs/hypre:= ) - sparse? ( sci-libs/klu:= ) - superlumt? ( sci-libs/superlu_mt:= ) -" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -PATCHES=( "${FILESDIR}"/${P}-fix-license-install-path.patch ) - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp && [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then - ewarn "OpenMP is not available in your current selected gcc" - die "need openmp capable gcc" - fi -} - -src_configure() { - mycmakeargs+=( - -DBUILD_SHARED_LIBS=ON - -DBUILD_STATIC_LIBS="$(usex static-libs)" - -DCXX_ENABLE="$(usex cxx)" - -DFCMIX_ENABLE="$(usex fortran)" - -DF90_ENABLE="$(usex fortran)" - -DHYPRE_ENABLE="$(usex hypre)" - -DHYPRE_INCLUDE_DIR="${EPREFIX}/usr/include/hypre" - -DKLU_ENABLE="$(usex sparse)" - -DKLU_LIBRARY="${EPREFIX}/usr/$(get_libdir)/libklu.so" - -DLAPACK_ENABLE="$(usex lapack)" - -DMPI_ENABLE="$(usex mpi)" - -DOPENMP_ENABLE="$(usex openmp)" - -DPTHREAD_ENABLE="$(usex threads)" - -DSUPERLUMT_ENABLE="$(usex superlumt)" - -DSUPERLUMT_INCLUDE_DIR="${EPREFIX}/usr/include/superlu_mt" - -DSUPERLUMT_LIBRARY="superlu_mt" - -DEXAMPLES_ENABLE="$(usex examples)" - -DEXAMPLES_INSTALL=ON - -DEXAMPLES_INSTALL_PATH="/usr/share/doc/${PF}/examples" - -DUSE_GENERIC_MATH=ON - ) - cmake-utils_src_configure -} - -src_install() { - cmake-utils_src_install - use doc && dodoc doc/*/*.pdf - cd src - for r in */README; do - newdoc ${r} README-${r%/*} - done -} diff --git a/sci-libs/sundials/sundials-4.1.0.ebuild b/sci-libs/sundials/sundials-4.1.0.ebuild deleted file mode 100644 index 54f396b21f78..000000000000 --- a/sci-libs/sundials/sundials-4.1.0.ebuild +++ /dev/null @@ -1,73 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -CMAKE_MAKEFILE_GENERATOR="emake" -FORTRAN_NEEDED=fortran -FORTRAN_STANDARD=90 - -inherit cmake-utils toolchain-funcs fortran-2 - -DESCRIPTION="Suite of nonlinear solvers" -HOMEPAGE="https://computation.llnl.gov/projects/sundials" -SRC_URI="https://computation.llnl.gov/projects/sundials/download/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0/$(ver_cut 1)" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="cxx doc examples fortran hypre lapack mpi openmp sparse static-libs superlumt threads" -REQUIRED_USE="hypre? ( mpi )" - -RDEPEND=" - lapack? ( virtual/lapack ) - mpi? ( virtual/mpi sci-libs/hypre:= ) - sparse? ( sci-libs/klu:= ) - superlumt? ( sci-libs/superlu_mt:= ) -" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -PATCHES=( "${FILESDIR}"/${P}-fix-license-install-path.patch ) - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp && [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then - ewarn "OpenMP is not available in your current selected gcc" - die "need openmp capable gcc" - fi -} - -src_configure() { - mycmakeargs+=( - -DBUILD_SHARED_LIBS=ON - -DBUILD_STATIC_LIBS="$(usex static-libs)" - -DCXX_ENABLE="$(usex cxx)" - -DFCMIX_ENABLE="$(usex fortran)" - -DF90_ENABLE="$(usex fortran)" - -DHYPRE_ENABLE="$(usex hypre)" - -DHYPRE_INCLUDE_DIR="${EPREFIX}/usr/include/hypre" - -DKLU_ENABLE="$(usex sparse)" - -DKLU_LIBRARY="${EPREFIX}/usr/$(get_libdir)/libklu.so" - -DLAPACK_ENABLE="$(usex lapack)" - -DMPI_ENABLE="$(usex mpi)" - -DOPENMP_ENABLE="$(usex openmp)" - -DPTHREAD_ENABLE="$(usex threads)" - -DSUPERLUMT_ENABLE="$(usex superlumt)" - -DSUPERLUMT_INCLUDE_DIR="${EPREFIX}/usr/include/superlu_mt" - -DSUPERLUMT_LIBRARY="superlu_mt" - -DEXAMPLES_ENABLE="$(usex examples)" - -DEXAMPLES_INSTALL=ON - -DEXAMPLES_INSTALL_PATH="/usr/share/doc/${PF}/examples" - -DUSE_GENERIC_MATH=ON - ) - cmake-utils_src_configure -} - -src_install() { - cmake-utils_src_install - use doc && dodoc doc/*/*.pdf - cd src - for r in */README; do - newdoc ${r} README-${r%/*} - done -} diff --git a/sci-libs/sundials/sundials-5.0.0.ebuild b/sci-libs/sundials/sundials-5.0.0.ebuild deleted file mode 100644 index 9505cbb40bfd..000000000000 --- a/sci-libs/sundials/sundials-5.0.0.ebuild +++ /dev/null @@ -1,69 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -CMAKE_MAKEFILE_GENERATOR="emake" -FORTRAN_NEEDED=fortran -FORTRAN_STANDARD=90 - -inherit cmake-utils toolchain-funcs fortran-2 - -DESCRIPTION="Suite of nonlinear solvers" -HOMEPAGE="https://computation.llnl.gov/projects/sundials" -SRC_URI="https://computation.llnl.gov/projects/sundials/download/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0/$(ver_cut 1)" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="cxx doc examples fortran hypre lapack mpi openmp sparse static-libs superlumt threads" -REQUIRED_USE="hypre? ( mpi )" - -RDEPEND=" - lapack? ( virtual/lapack ) - mpi? ( virtual/mpi sci-libs/hypre:= ) - sparse? ( sci-libs/klu:= ) - superlumt? ( sci-libs/superlu_mt:= ) -" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -PATCHES=( "${FILESDIR}"/${P}-fix-license-install-path.patch ) - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp && [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then - ewarn "OpenMP is not available in your current selected gcc" - die "need openmp capable gcc" - fi -} - -src_configure() { - mycmakeargs+=( - -DBUILD_SHARED_LIBS=ON - -DBUILD_STATIC_LIBS="$(usex static-libs)" - -DCXX_ENABLE="$(usex cxx)" - -DFCMIX_ENABLE="$(usex fortran)" - -DF90_ENABLE="$(usex fortran)" - -DHYPRE_ENABLE="$(usex hypre)" - -DHYPRE_INCLUDE_DIR="${EPREFIX}/usr/include/hypre" - -DKLU_ENABLE="$(usex sparse)" - -DKLU_LIBRARY="${EPREFIX}/usr/$(get_libdir)/libklu.so" - -DLAPACK_ENABLE="$(usex lapack)" - -DMPI_ENABLE="$(usex mpi)" - -DOPENMP_ENABLE="$(usex openmp)" - -DPTHREAD_ENABLE="$(usex threads)" - -DSUPERLUMT_ENABLE="$(usex superlumt)" - -DSUPERLUMT_INCLUDE_DIR="${EPREFIX}/usr/include/superlu_mt" - -DSUPERLUMT_LIBRARY="-lsuperlu_mt" - -DEXAMPLES_ENABLE="$(usex examples)" - -DEXAMPLES_INSTALL=ON - -DEXAMPLES_INSTALL_PATH="/usr/share/doc/${PF}/examples" - -DUSE_GENERIC_MATH=ON - ) - cmake-utils_src_configure -} - -src_install() { - cmake-utils_src_install - use doc && dodoc doc/*/*.pdf -} diff --git a/sci-libs/sundials/sundials-5.1.0.ebuild b/sci-libs/sundials/sundials-5.1.0.ebuild deleted file mode 100644 index c6bc6848c819..000000000000 --- a/sci-libs/sundials/sundials-5.1.0.ebuild +++ /dev/null @@ -1,70 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -CMAKE_MAKEFILE_GENERATOR="emake" -FORTRAN_NEEDED=fortran -FORTRAN_STANDARD="77 90" -# if FFLAGS and FCFLAGS are set then should be equal - -inherit cmake fortran-2 toolchain-funcs - -DESCRIPTION="Suite of nonlinear solvers" -HOMEPAGE="https://computation.llnl.gov/projects/sundials" -SRC_URI="https://computation.llnl.gov/projects/sundials/download/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0/$(ver_cut 1)" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="cxx doc examples fortran hypre lapack mpi openmp sparse static-libs superlumt threads" -REQUIRED_USE="hypre? ( mpi )" - -BDEPEND="virtual/pkgconfig" -RDEPEND=" - lapack? ( virtual/lapack ) - mpi? ( virtual/mpi sci-libs/hypre:= ) - sparse? ( sci-libs/klu ) - superlumt? ( sci-libs/superlu_mt:= ) -" -DEPEND="${RDEPEND}" - -PATCHES=( "${FILESDIR}"/${P}-fix-license-install-path.patch ) - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp && [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then - ewarn "OpenMP is not available in your current selected gcc" - die "need openmp capable gcc" - fi -} - -src_configure() { - mycmakeargs+=( - -DBUILD_SHARED_LIBS=ON - -DBUILD_STATIC_LIBS="$(usex static-libs)" - -DCXX_ENABLE="$(usex cxx)" - -DFCMIX_ENABLE="$(usex fortran)" - -DF90_ENABLE="$(usex fortran)" - -DHYPRE_ENABLE="$(usex hypre)" - -DHYPRE_INCLUDE_DIR="${EPREFIX}/usr/include/hypre" - -DKLU_ENABLE="$(usex sparse)" - -DLAPACK_ENABLE="$(usex lapack)" - -DMPI_ENABLE="$(usex mpi)" - -DOPENMP_ENABLE="$(usex openmp)" - -DPTHREAD_ENABLE="$(usex threads)" - -DSUPERLUMT_ENABLE="$(usex superlumt)" - -DSUPERLUMT_INCLUDE_DIR="${EPREFIX}/usr/include/superlu_mt" - -DSUPERLUMT_LIBRARY="-lsuperlu_mt" - -DEXAMPLES_ENABLE="$(usex examples)" - -DEXAMPLES_INSTALL=ON - -DEXAMPLES_INSTALL_PATH="/usr/share/doc/${PF}/examples" - -DUSE_GENERIC_MATH=ON - ) - use sparse && mycmakeargs+=( -DKLU_LIBRARY="${EPREFIX}/usr/$(get_libdir)/libklu.so" ) - cmake_src_configure -} - -src_install() { - cmake_src_install - use doc && dodoc doc/*/*.pdf -} diff --git a/sci-libs/superlu/Manifest b/sci-libs/superlu/Manifest index 9841fdaa7b53..4388ed82ca35 100644 --- a/sci-libs/superlu/Manifest +++ b/sci-libs/superlu/Manifest @@ -1,7 +1,5 @@ AUX superlu-4.3-autotools.patch 18676 BLAKE2B c6312a4db288aed46f696b57291268cfe435f531b5cade47f146fce74bdc8e9e7efb6b200448c06b6aa0cd57188d87fe2e20557678e98f83dab07526bcc42d91 SHA512 62f868126af7acc3658bdff6eda8839d06dd14b5195d23a2b7bbbe1008e9258875ac3c9bc4ed40f4ac58443ac4aeef786499b02ff45f2adb304160f3b25b0bf3 AUX superlu-4.3-format-security.patch 312 BLAKE2B 2ab1eaa7072a06abf80373a86e73d3cd131a5dfb1fee370fac330c7932d0b20dc94f2711be077d3739af0f1d6b9779080f0ccf75a65b50156aab35cfd451b7d4 SHA512 86072c671b946a73e8857fcf60499c589c0de8ca2433c2310701a2249eb32968e7ab83e638be1fcee3358d3b1432cba988cf11644962dbf09045b4907b9ebf6a -AUX superlu-5.2.1-no-implicits.patch 4950 BLAKE2B 32a01cb343e21ee870fdfec54f3e529861ddc521966d732430effaad34e442d83f53da222301ff719d81777082ccfa85a262cddf577a8b0320d0a2fc63b1e042 SHA512 9bcf34847baddd7d330638d9115359cd2bd6d7630cc24a8fd9432b83485e6b2f1bb2500971f65b1fe26ec2ca70f7483105e1a02ba4083763ca79794dabe8551a -AUX superlu-5.2.1-pkgconfig.patch 1013 BLAKE2B a36aac6c06fa8cb4bd3d19fcc74b27c092283b209665cb4dc5d3336f4b025f5145a190e76105b5e96f846e02fd4fe43a71b9542937beefe5e8b375b54ad87e05 SHA512 f22dcbaaa6857008b75b8c6481b219b11c09ebcfe2dffe0a4d4f0cba6392f18fc9a5a870b2a8efa7c31df321b78186cbde7cf8739da59dc089fa3b6ae836bf36 AUX superlu-5.2.2-no-internal-blas.patch 733 BLAKE2B d289296570a02914591ed213e1c866124ae29f94348ca5cbfe9313dc581e12aba20fd34741b89b84988365c4c64b14c47d08b82c79870ab57f21dc8d0a0f6370 SHA512 496f5ed971cdd2dfaedf065d5ec52e0c6435506fcace45ed9059cb17d9ea1914cc9b0276b68a250728cc5bcf48a184bca5638e3fcadabd170eb1c8c9d342844c DIST superlu_4.3.tar.gz 2876631 BLAKE2B 0a563e6730394f8e69fe13f1418f9f046bd37c848c51063e93a24a209e50a67f91b725eb3978fd6c4d28e51615806d6c0b6a2539cbc0d7fd11b5e4f0a9360148 SHA512 5c13da47b79160be14719f62ccdf5d59142a172e25a988fa340eaeb001a64d7f45ba39e675cb7aa3571bec52cb3a7cda0bb7a708c9608184ba6251edb7990e8c DIST superlu_5.2.2.tar.gz 2481538 BLAKE2B db9d6437c8012f1aeeb3313212298a77e4ef04405c6ec853ceeef8b80426ea80d8b9fc30a0ca2dd7288131a0e21c43e17cafafaa7fb615d6d825b54f4beb84a2 SHA512 091928a3df3433b337ebdacdb28de341d6d29d655965de6ffd656a6de18cf11171555bfd3af73082af62b1cead6835b4c11e4ba524a32db7f7d28db47c9d490c diff --git a/sci-libs/superlu/files/superlu-5.2.1-no-implicits.patch b/sci-libs/superlu/files/superlu-5.2.1-no-implicits.patch deleted file mode 100644 index 587380ce2e35..000000000000 --- a/sci-libs/superlu/files/superlu-5.2.1-no-implicits.patch +++ /dev/null @@ -1,153 +0,0 @@ -diff --git a/SRC/clacon2.c b/SRC/clacon2.c -index 107bb64..39deb83 100644 ---- a/SRC/clacon2.c -+++ b/SRC/clacon2.c -@@ -106,6 +106,11 @@ clacon2_(int *n, complex *v, complex *x, float *est, int *kase, int isave[3]) - extern float smach(char *); - extern int icmax1_slu(int *, complex *, int *); - extern double scsum1_slu(int *, complex *, int *); -+#ifdef _CRAY -+ extern int CCOPY(int *, complex *, int *, complex [], int *); -+#else -+ extern int ccopy_(int *, complex *, int *, complex [], int *); -+#endif - - safmin = smach("Safe minimum"); /* lamch_("Safe minimum"); */ - if ( *kase == 0 ) { -diff --git a/SRC/dmach.c b/SRC/dmach.c -index 73beacb..cafdf1c 100644 ---- a/SRC/dmach.c -+++ b/SRC/dmach.c -@@ -11,6 +11,7 @@ at the top-level directory. - #include <float.h> - #include <math.h> - #include <stdio.h> -+#include <string.h> - - double dmach(char *cmach) - { -diff --git a/SRC/ilu_cdrop_row.c b/SRC/ilu_cdrop_row.c -index 4987548..09b8a93 100644 ---- a/SRC/ilu_cdrop_row.c -+++ b/SRC/ilu_cdrop_row.c -@@ -28,6 +28,7 @@ extern void caxpy_(int *, complex *, complex [], int *, complex [], int *); - extern void ccopy_(int *, complex [], int *, complex [], int *); - extern float scasum_(int *, complex *, int *); - extern float scnrm2_(int *, complex *, int *); -+extern void scopy_(int *, float [], int *, float [], int *); - extern double dnrm2_(int *, double [], int *); - extern int icamax_(int *, complex [], int *); - -diff --git a/SRC/ilu_zdrop_row.c b/SRC/ilu_zdrop_row.c -index f434dd9..2de1226 100644 ---- a/SRC/ilu_zdrop_row.c -+++ b/SRC/ilu_zdrop_row.c -@@ -29,6 +29,7 @@ extern void zcopy_(int *, doublecomplex [], int *, doublecomplex [], int *); - extern double dzasum_(int *, doublecomplex *, int *); - extern double dznrm2_(int *, doublecomplex *, int *); - extern double dnrm2_(int *, double [], int *); -+extern void dcopy_(int *, double [], int *, double [], int *); - extern int izamax_(int *, doublecomplex [], int *); - - static double *A; /* used in _compare_ only */ -diff --git a/SRC/slacon2.c b/SRC/slacon2.c -index 7c93341..50efe78 100644 ---- a/SRC/slacon2.c -+++ b/SRC/slacon2.c -@@ -157,7 +157,7 @@ L40: - #ifdef _CRAY - isave[1] = ISAMAX(n, &x[0], &c__1); /* j */ - #else -- isave[1] = idamax_(n, &x[0], &c__1); /* j */ -+ isave[1] = isamax_(n, &x[0], &c__1); /* j */ - #endif - --isave[1]; /* --j; */ - isave[2] = 2; /* iter = 2; */ -diff --git a/SRC/smach.c b/SRC/smach.c -index fff6c5f..0b69991 100644 ---- a/SRC/smach.c -+++ b/SRC/smach.c -@@ -11,6 +11,7 @@ at the top-level directory. - #include <float.h> - #include <math.h> - #include <stdio.h> -+#include <string.h> - - float smach(char *cmach) - { -diff --git a/SRC/sp_ienv.c b/SRC/sp_ienv.c -index 855d901..ce2865e 100644 ---- a/SRC/sp_ienv.c -+++ b/SRC/sp_ienv.c -@@ -24,6 +24,7 @@ at the top-level directory. - * History: Modified from lapack routine ILAENV - */ - #include "slu_Cnames.h" -+extern int input_error(char *, int *); - - /*! \brief - -diff --git a/SRC/zlacon2.c b/SRC/zlacon2.c -index b43c619..ed5f2b7 100644 ---- a/SRC/zlacon2.c -+++ b/SRC/zlacon2.c -@@ -106,6 +106,11 @@ zlacon2_(int *n, doublecomplex *v, doublecomplex *x, double *est, int *kase, int - extern double dmach(char *); - extern int izmax1_slu(int *, doublecomplex *, int *); - extern double dzsum1_slu(int *, doublecomplex *, int *); -+#ifdef _CRAY -+ extern int CCOPY(int *, doublecomplex *, int *, doublecomplex *, int *); -+#else -+ extern int zcopy_(int *, doublecomplex *, int *, doublecomplex *, int *); -+#endif - - safmin = dmach("Safe minimum"); /* lamch_("Safe minimum"); */ - if ( *kase == 0 ) { -diff --git a/TESTING/zdrive.c b/TESTING/zdrive.c -index 23e96fc..1e7d0aa 100644 ---- a/TESTING/zdrive.c -+++ b/TESTING/zdrive.c -@@ -21,6 +21,7 @@ at the top-level directory. - * Purpose: MAIN test program - */ - #include <string.h> -+#include <unistd.h> - #include "slu_zdefs.h" - - #define NTESTS 5 /* Number of test types */ -diff --git a/TESTING/cdrive.c b/TESTING/cdrive.c -index 8bc8d10..00fe0d8 100644 ---- a/TESTING/cdrive.c -+++ b/TESTING/cdrive.c -@@ -21,6 +21,7 @@ at the top-level directory. - * Purpose: MAIN test program - */ - #include <string.h> -+#include <unistd.h> - #include "slu_cdefs.h" - - #define NTESTS 5 /* Number of test types */ -diff --git a/TESTING/sdrive.c b/TESTING/sdrive.c -index 5b98038..cba0c83 100644 ---- a/TESTING/sdrive.c -+++ b/TESTING/sdrive.c -@@ -21,6 +21,7 @@ at the top-level directory. - * Purpose: MAIN test program - */ - #include <string.h> -+#include <unistd.h> - #include "slu_sdefs.h" - - #define NTESTS 5 /* Number of test types */ -diff --git a/TESTING/ddrive.c b/TESTING/ddrive.c -index 2c3f6fe..35685c5 100644 ---- a/TESTING/ddrive.c -+++ b/TESTING/ddrive.c -@@ -21,6 +21,7 @@ at the top-level directory. - * Purpose: MAIN test program - */ - #include <string.h> -+#include <unistd.h> - #include "slu_ddefs.h" - - #define NTESTS 5 /* Number of test types */ diff --git a/sci-libs/superlu/files/superlu-5.2.1-pkgconfig.patch b/sci-libs/superlu/files/superlu-5.2.1-pkgconfig.patch deleted file mode 100644 index 63252dffdb57..000000000000 --- a/sci-libs/superlu/files/superlu-5.2.1-pkgconfig.patch +++ /dev/null @@ -1,29 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index d8abc1b..5883b34 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -143,3 +143,6 @@ endif() - # ${CMAKE_C_COMPILER} ) - configure_file(${CMAKE_SOURCE_DIR}/make.inc.in ${CMAKE_SOURCE_DIR}/make.inc) - -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/superlu.pc.in ${CMAKE_CURRENT_BINARY_DIR}/superlu.pc @ONLY) -+install(FILES ${CMAKE_CURRENT_BINARY_DIR}/superlu.pc -+ DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig) -diff --git a/superlu.pc.in b/superlu.pc.in -new file mode 100644 -index 0000000..09b1fff ---- /dev/null -+++ b/superlu.pc.in -@@ -0,0 +1,12 @@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+libdir=@CMAKE_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@ -+includedir=@CMAKE_INSTALL_PREFIX@/@CMAKE_INSTALL_INCLUDEDIR@ -+ -+Name: @CMAKE_PROJECT_NAME@ -+Description: Direct solution of large, sparse systems of linear equations -+Version: @PROJECT_VERSION@ -+URL: http://crd-legacy.lbl.gov/~xiaoye/SuperLU/ -+ -+Libs: -L${libdir} -lsuperlu -+Libs.private: @BLAS_LIB@ -lm -+Cflags: -I${includedir} diff --git a/sci-libs/trilinos/Manifest b/sci-libs/trilinos/Manifest index e0b35e33b55a..ddd4bb13b153 100644 --- a/sci-libs/trilinos/Manifest +++ b/sci-libs/trilinos/Manifest @@ -1,6 +1,4 @@ DIST trilinos-13.0.0-patches-r0.tar.xz 7672 BLAKE2B 6412f1226549086ef2fca3c4d8bba3c5541489879f4fa37c3598a7271128e3232fa1cc56a51d44fb88d679458a79a082c3984085ddbe4bc0884b0cb45ba683c0 SHA512 91372fe0f47a1f5d4dbc1856e2cfb9d4f1eb8cc0de941013a7a6e791730c9e10decdcd4ca39b36bae836ac66040bee70af187b4a056d46b0da0fe72e8c5943fc -DIST trilinos-13.0.0.tar.gz 157960946 BLAKE2B 6336d71f469dd4561786092b175ec3396d6b7956aeec6ab8d9d6e87a1b1158a0840661a87514888fc16ea36c44d628dadb865a3244785c2c5d4b24213aca2096 SHA512 74b1e852971c8f040e8640688c879659bf6b03eed0bc6f76f31d768e7c4eb50b23fb8bfb9997d7f630001d80150161aac80fbd3237f52071657908320c1d723d DIST trilinos-13.0.1.tar.gz 157950374 BLAKE2B 79f337b02a0fe9ddf7b55334e035946204b3bb469b92fff4063896a378c82d9c5f04c0bf0e9ddd21603ecf9d84a91860606482b545916f16029a11d2b6c64aa0 SHA512 22241a9ad8b6b6ab9117aba254f65195fc0c8e1b52eacb16e763c999086b6da6b0c180d8864fbe421704e0fe0c433d37512099755d54e60f13ed525dc6c0fd57 -EBUILD trilinos-13.0.0.ebuild 6530 BLAKE2B 655911a00a65ff877f2c3eae666ab44136db8b9651683120f0e8f85fbb883206c3ebce2f5464d9d140e9246102af741d2ed2ff688e0146055ac1c9aae15d47bb SHA512 ab20c26d14b3b03e4e5d66c4aa5f69913bafa34d933891269007613694fb2ec7c54bde1164e81daf9f8cad33bcd221532773e2b79cd693fa18d96e8bb0f1a2d0 -EBUILD trilinos-13.0.1.ebuild 6503 BLAKE2B 4610913cfba5220f83712b93a5dbc6e684bdd3da572171ee80bbf3375ff28466c7e1f57a68b9c1e0baf62a1375a12c2401f5700798be3a39820a113375cc7dd1 SHA512 28ec65d1bfe227f59585d5dc81aed40ed5a15236a40e38141bb658075dc28e6f6c76e1de9598cdfdc18fa9307c66dc05f41e994b02442d3348df4889835c0214 +EBUILD trilinos-13.0.1.ebuild 6486 BLAKE2B 4e8818107f9b7252031d4c006813e48cda70b03ccb4f45fefe81bac57b44ae75bea8ec59203995d55c27a6bf67e7ebfec6d156db928efe5ea94e02f1f8bd6333 SHA512 48948df368a736614b2a89fcea6d58b35d248f88a7098f5ba20d8a7f26d8ed7c849cf274e07ea4f3e5f8c07a4d1e53a1651596cd96064fee95f9574104197b40 MISC metadata.xml 2778 BLAKE2B 45cb2a647a1730c9b6b21271364b5f4acaf145f6ae33db356d0b9be7584705c29a645d3f96abfe0a9b87540ae55ab586ec202191776f4472b66291c274b9f24b SHA512 c58e98197353efe1c6fef038dd53d4a938e85aa66fc53f00cab0133d8ee89c629eead55c270c88583778b193f0a85b498c7235fc3f1e8f45a1abfff2d5f0cbec diff --git a/sci-libs/trilinos/trilinos-13.0.0.ebuild b/sci-libs/trilinos/trilinos-13.0.0.ebuild deleted file mode 100644 index efce4176d970..000000000000 --- a/sci-libs/trilinos/trilinos-13.0.0.ebuild +++ /dev/null @@ -1,220 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 -CMAKE_MAKEFILE_GENERATOR=emake - -inherit cmake-utils toolchain-funcs multilib toolchain-funcs - -DESCRIPTION="Scientific library collection for large scale problems" -HOMEPAGE="http://trilinos.sandia.gov/" -MY_PV="${PV//\./-}" -PATCHSET="r0" -SRC_URI="https://github.com/${PN}/Trilinos/archive/${PN}-release-${MY_PV}.tar.gz -> ${P}.tar.gz - https://dev.gentoo.org/~tamiko/distfiles/${P}-patches-${PATCHSET}.tar.xz" - -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" - -LICENSE="BSD LGPL-2.1" -SLOT="0" - -IUSE=" - adolc arprec boost clp cuda eigen glpk gtest hdf5 hwloc hypre - matio metis mkl mumps netcdf petsc qd scalapack scotch sparse - superlu taucs tbb test threads tvmet yaml zlib X -" - -# TODO: fix export cmake function for tests -RESTRICT="test" - -RDEPEND=" - sys-libs/binutils-libs - virtual/blas - virtual/lapack - virtual/mpi - adolc? ( sci-libs/adolc ) - arprec? ( sci-libs/arprec ) - boost? ( dev-libs/boost ) - clp? ( sci-libs/coinor-clp ) - cuda? ( >=dev-util/nvidia-cuda-toolkit-3.2 ) - eigen? ( dev-cpp/eigen:3 ) - glpk? ( sci-mathematics/glpk ) - gtest? ( dev-cpp/gtest ) - hdf5? ( sci-libs/hdf5[mpi] ) - hypre? ( sci-libs/hypre ) - hwloc? ( sys-apps/hwloc ) - matio? ( sci-libs/matio ) - mkl? ( sci-libs/mkl ) - metis? ( || ( sci-libs/parmetis sci-libs/metis ) ) - mumps? ( sci-libs/mumps ) - netcdf? ( sci-libs/netcdf ) - petsc? ( sci-mathematics/petsc ) - qd? ( sci-libs/qd ) - scalapack? ( sci-libs/scalapack ) - scotch? ( sci-libs/scotch ) - sparse? ( sci-libs/cxsparse sci-libs/umfpack ) - superlu? ( sci-libs/superlu ) - taucs? ( sci-libs/taucs ) - tbb? ( dev-cpp/tbb ) - tvmet? ( dev-libs/tvmet ) - yaml? ( dev-cpp/yaml-cpp ) - zlib? ( sys-libs/zlib ) - X? ( x11-libs/libX11 )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -S="${WORKDIR}/Trilinos-${PN}-release-${MY_PV}" - -PATCHES=( - "${WORKDIR}"/patches -) - -trilinos_conf() { - local dirs libs d - for d in $($(tc-getPKG_CONFIG) --libs-only-L $1); do - dirs="${dirs};${d:2}" - done - [[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_DIRS=${dirs:1}" ) - for d in $($(tc-getPKG_CONFIG) --libs-only-l $1); do - libs="${libs};${d:2}" - done - [[ -n ${libs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_NAMES=${libs:1}" ) - dirs="" - for d in $($(tc-getPKG_CONFIG) --cflags-only-I $1); do - dirs="${dirs};${d:2}" - done - [[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_INCLUDE_DIRS=${dirs:1}" ) -} - -src_configure() { - local mycmakeargs=( - -DBUILD_SHARED_LIBS=ON - -DCMAKE_INSTALL_PREFIX="${EPREFIX}" - -DCMAKE_SKIP_INSTALL_RPATH=ON - -DTrilinos_INSTALL_CONFIG_DIR="${EPREFIX}/usr/$(get_libdir)/cmake" - -DTrilinos_INSTALL_INCLUDE_DIR="${EPREFIX}/usr/include/trilinos" - -DTrilinos_INSTALL_LIB_DIR="${EPREFIX}/usr/$(get_libdir)/trilinos" - -DTrilinos_ENABLE_ALL_PACKAGES=ON - -DTrilinos_ENABLE_PyTrilinos=OFF - -DTrilinos_ENABLE_SEACAS=OFF - -DTrilinos_ENABLE_SEACASChaco=OFF - -DTrilinos_ENABLE_SEACASExodiff="$(usex netcdf)" - -DTrilinos_ENABLE_SEACASExodus="$(usex netcdf)" - -DTrilinos_ENABLE_TESTS="$(usex test)" - -DZoltan2_ENABLE_Experimental=ON - -DTPL_ENABLE_BinUtils=ON - -DTPL_ENABLE_BLAS=ON - -DTPL_ENABLE_LAPACK=ON - -DTPL_ENABLE_MPI=ON - -DTPL_ENABLE_ADOLC="$(usex adolc)" - -DTPL_ENABLE_AMD="$(usex sparse)" - -DTPL_ENABLE_ARPREC="$(usex arprec)" - -DTPL_ENABLE_BLACS="$(usex scalapack)" - -DTPL_ENABLE_BoostLib="$(usex boost)" - -DTPL_ENABLE_Boost="$(usex boost)" - -DTPL_ENABLE_Clp="$(usex clp)" - -DTPL_ENABLE_CSparse="$(usex sparse)" - -DTPL_ENABLE_CUDA="$(usex cuda)" - -DTPL_ENABLE_CUSPARSE="$(usex cuda)" - -DTPL_ENABLE_Eigen="$(usex eigen)" - -DTPL_ENABLE_GLPK="$(usex glpk)" - -DTPL_ENABLE_gtest="$(usex gtest)" - -DTPL_ENABLE_HDF5="$(usex hdf5)" - -DTPL_ENABLE_HWLOC="$(usex hwloc)" - -DTPL_ENABLE_HYPRE="$(usex hypre)" - -DTPL_ENABLE_Matio="$(usex matio)" - -DTPL_ENABLE_METIS="$(usex metis)" - -DTPL_ENABLE_MKL="$(usex mkl)" - -DTPL_ENABLE_MUMPS="$(usex mumps)" - -DTPL_ENABLE_Netcdf="$(usex netcdf)" - -DTPL_ENABLE_PARDISO_MKL="$(usex mkl)" - -DTPL_ENABLE_PETSC="$(usex petsc)" - -DTPL_ENABLE_Pthread="$(usex threads)" - -DTPL_ENABLE_QD="$(usex qd)" - -DTPL_ENABLE_SCALAPACK="$(usex scalapack)" - -DTPL_ENABLE_Scotch="$(usex scotch)" - -DTPL_ENABLE_SuperLU="$(usex superlu)" - -DTPL_ENABLE_TAUCS="$(usex taucs)" - -DTPL_ENABLE_TBB="$(usex tbb)" - -DTPL_ENABLE_Thrust="$(usex cuda)" - -DTPL_ENABLE_TVMET="$(usex tvmet)" - -DTPL_ENABLE_UMFPACK="$(usex sparse)" - -DTPL_ENABLE_X11="$(usex X)" - -DTPL_ENABLE_yaml-cpp="$(usex yaml)" - -DTPL_ENABLE_Zlib="$(usex zlib)" - -DML_ENABLE_SuperLU:BOOL=OFF - ) - - use eigen && \ - mycmakeargs+=( - -DEigen_INCLUDE_DIRS="${EPREFIX}/usr/include/eigen3" - ) - use hypre && \ - mycmakeargs+=( - -DHYPRE_INCLUDE_DIRS="${EPREFIX}/usr/include/hypre" - ) - use scotch && \ - mycmakeargs+=( - -DScotch_INCLUDE_DIRS="${EPREFIX}/usr/include/scotch" - ) - - # cxsparse is a rewrite of csparse + extras - use sparse && \ - mycmakeargs+=( - -DCSparse_LIBRARY_NAMES="cxsparse" - ) - - # mandatory blas and lapack - trilinos_conf blas BLAS - trilinos_conf lapack LAPACK - use superlu && trilinos_conf superlu SuperLU - use metis && trilinos_conf metis METIS - - # blacs library is included in scalapack these days - if use scalapack; then - trilinos_conf scalapack SCALAPACK - mycmakeargs+=( - -DBLACS_LIBRARY_NAMES="scalapack" - -DBLACS_INCLUDE_DIRS="${EPREFIX}/usr/include/blacs" - ) - fi - - # - # Make sure we use the compiler wrappers in order to build trilinos. - # - export CC=mpicc CXX=mpicxx && tc-export CC CXX - - # - # cmake-utils eclass patches the base directory CMakeLists.txt - # which does not work for complex Trilinos CMake modules - # - CMAKE_BUILD_TYPE=RELEASE cmake-utils_src_configure -} - -src_install() { - cmake-utils_src_install - - # Clean up the mess: - mv "${ED}"/bin "${ED}/usr/$(get_libdir)"/trilinos || die "mv failed" - mv "${ED}/usr/$(get_libdir)"/trilinos/cmake/* "${ED}/usr/$(get_libdir)"/cmake || die "mv failed" - rmdir "${ED}/usr/$(get_libdir)/trilinos/cmake" || die "rmdir failed" - if [ -f "${ED}"/lib/exodus.py ]; then - mv "${ED}"/lib/exodus.py "${ED}/usr/$(get_libdir)"/trilinos || die "mv failed" - fi - if [[ $(get_libdir) != lib ]]; then - mv "${ED}"/usr/lib/pkgconfig "${ED}/usr/$(get_libdir)" - fi - - mv "${ED}"/include/* "${ED}"/usr/include || die "mv failed" - rmdir "${ED}"/include - - # - # register $(get_libdir)/trilinos in LDPATH so that the dynamic linker - # has a chance to pick up the libraries... - # - cat >> "${T}"/99trilinos <<- EOF - LDPATH="${EPREFIX}/usr/$(get_libdir)/trilinos" - PATH="${EPREFIX}/usr/$(get_libdir)/trilinos/bin" - EOF - doenvd "${T}"/99trilinos -} diff --git a/sci-libs/trilinos/trilinos-13.0.1.ebuild b/sci-libs/trilinos/trilinos-13.0.1.ebuild index c7868ab5db28..511aa77ec426 100644 --- a/sci-libs/trilinos/trilinos-13.0.1.ebuild +++ b/sci-libs/trilinos/trilinos-13.0.1.ebuild @@ -1,10 +1,10 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -CMAKE_MAKEFILE_GENERATOR=emake -inherit cmake-utils toolchain-funcs multilib toolchain-funcs +CMAKE_MAKEFILE_GENERATOR=emake +inherit cmake-utils toolchain-funcs multilib DESCRIPTION="Scientific library collection for large scale problems" HOMEPAGE="http://trilinos.sandia.gov/" @@ -14,7 +14,6 @@ SRC_URI="https://github.com/${PN}/Trilinos/archive/${PN}-release-${MY_PV}.tar.gz https://dev.gentoo.org/~tamiko/distfiles/${PN}-13.0.0-patches-${PATCHSET}.tar.xz" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" - LICENSE="BSD LGPL-2.1" SLOT="0" diff --git a/sci-libs/volk/Manifest b/sci-libs/volk/Manifest index c5a0c7cbc06c..f1d0c41bae6b 100644 --- a/sci-libs/volk/Manifest +++ b/sci-libs/volk/Manifest @@ -1,3 +1,3 @@ DIST volk-2.4.1.tar.xz 315072 BLAKE2B 1ce1d220f9e1e9251332fb6caf7d72eaf3db85009a49434edbf6490b02ab016c4b1eb8677f0e5f446f5783615f2256710621b1806684dffeb1ff441756e4a635 SHA512 7c16a5d750cdea2927c3b08dcad29e19f10932a3b7b35cb25ecc66554d7e441c95906a4746fcf62f895709aee1191f1bb91189c3509b444b6b4ba37a306f9909 -EBUILD volk-2.4.1.ebuild 1015 BLAKE2B 10b82c48ac5ba097e13dc035da145d377a8d6d139697c3f50333c4d9752a9640ecacfc068805f51a25ba8753bef301e259e31dc31b580f8ce455fb9831201d47 SHA512 86d04659f916ac06c64fb2b593bf532269ce4dc4b7403357c4d0e78c1c5b9398195486e9bbdff23c3f40896dab513fd9b10b78215805b549a6128d4147142548 +EBUILD volk-2.4.1.ebuild 1000 BLAKE2B fd51281cbcc3f295e10573db829bb993ca73343b99155d082f59f5e0184e5b88ce5cdc1b36593de33b02b610d65fd6afe0b5537a2a8ee8ed2c0fd9b2a2364894 SHA512 10fb2c867f0fbb1827890142e9870004796c820c2622c0a8c57c8de04086416994ebd46c8bee1b30d80e2373be6e8b3010a2bf911b1c1da1e15affd1827b3a79 MISC metadata.xml 247 BLAKE2B 0aa7491a8e9a68ed7ad1c53c8442fd44a9dbdfbd7ef0662e838195b44ce72a77f5dc3b846cf9951bb61de78e05aac37649b78dd4c27e304780e1223d607a4252 SHA512 3344e220b20caad7bc32141ad5d51630ff0738ab14608334576638297fdd2a48d5169ef54fb33e36d27bd448d92f8ef9e41880df388521efd4a2c58d102c7c69 diff --git a/sci-libs/volk/volk-2.4.1.ebuild b/sci-libs/volk/volk-2.4.1.ebuild index 2450491ce80e..625970715011 100644 --- a/sci-libs/volk/volk-2.4.1.ebuild +++ b/sci-libs/volk/volk-2.4.1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -11,7 +11,7 @@ inherit cmake python-single-r1 DESCRIPTION="vector optimized library of kernels" HOMEPAGE="http://libvolk.org" -SRC_URI="https://github.com/gnuradio/volk/releases/download/v${PV}/${P}.tar.xz -> ${P}.tar.xz" +SRC_URI="https://github.com/gnuradio/volk/releases/download/v${PV}/${P}.tar.xz" LICENSE="GPL-3" SLOT="0/$(ver_cut 1-2)" diff --git a/sci-libs/votca-tools/Manifest b/sci-libs/votca-tools/Manifest index 3a703efc82a6..3b1a789f808d 100644 --- a/sci-libs/votca-tools/Manifest +++ b/sci-libs/votca-tools/Manifest @@ -6,6 +6,7 @@ DIST votca-tools-1.5.tar.gz 129464 BLAKE2B 2ab72758cc7c9bed5a49c924f7f0a93dc562a DIST votca-tools-1.6.1.tar.gz 110141 BLAKE2B 948908a3aedb360d63aaf4077de366fb8dad7b5c97cd4532458a67e90e6e0271ba4ef30a23be264f426a1f860708592360982f283346d0a4788111719d3a8ee9 SHA512 e7dc03df46670f83139c0283824a630d8bec6cda5da156bc09e35e3c373f1cc65359ddb912e6bf19431a588acc5569ad57000045083d155fcc15c93980cfd26e DIST votca-tools-1.6.2.tar.gz 109808 BLAKE2B 1eebb2950004ec5b0a0494904b35f5dc539a5a93e36d40ffdfba911632e48ef9431bfd8d6305c0b5f516c70cff8156976efa6d216ae061a77e018047e543beee SHA512 03139591e934ae97b6c0ddcd0fa9480b4b9d28c05882489b9067b9519727a97a1589a645c3d9ad959d65fa622e3845e8d1d5141f210e2704907d7d6f0bff2abc DIST votca-tools-1.6.3.tar.gz 109937 BLAKE2B 4cc6a0f061c3455ff326eada36c5b66e31aedbc6aac297db42a128940c17d81dbd41e47c7c9af012ab5b24a7fe9f12575bf3563fd566d62492d1c79f1887db02 SHA512 2bc780f7b852e0d63ef1a6ff697c75aa67666121b8192a965442b62167fe33f69b0d4c18fb6b255326d02ba3cffd02c6af8f5d67364fafd9de597897ab30e349 +DIST votca-tools-1.6.4.tar.gz 109929 BLAKE2B 8bc55fcd0a021002f11d412440a369a169c3c62ae5978781010de0a05502e43ed1ccbe5066e3d46ac8ef6fd0c1471baca70d35f6468ccbfd480dc0fa6f2b5047 SHA512 7a334071086e755960a3bd938c1baa1979c4cc9cd8f865af00540fa45365bf1c3153ffb8a5a5948618c47ebafcda9ecc62850d44ea06b7f35ac4587bd423439a DIST votca-tools-1.6.tar.gz 109824 BLAKE2B e030899e210e0f3030d43796a468ea20a573fe7ee62fbfde53e2e6865a9c0657d92ed06ddc44ebfa1c37c6142c865e97380e00570070351d75c403ead6fcfd19 SHA512 0159bc10066e05da8ba0f70e3c70d8cb4cd7b07ebd58edff1ccfeb86504af855eb5cae7184200e5c8ee3a3f6b6b85ec46a045f00dc8e681073ae8fdbbfc3965a DIST votca-tools-1.6_rc1.tar.gz 128577 BLAKE2B d9270739c00f945ff4af24e45a529e73ff0da596956791991f03b5586134d16b5fec077b3859dcd685de96a334f419f5f82ede7df60614482c9fddc61a01ca8d SHA512 42b0eae148bb93293ac16e193d2595aaa850dcee0dcaab1f6cf0ca8e36a95a1719a03243d421fbfb1034c81baf2ef294768a86530f0d69b59862df95846241ed EBUILD votca-tools-1.4.1.ebuild 1197 BLAKE2B 70156b894020cf325d33b71ba81f01ca2bcbbf60a37559eb062d12dd936d05302f409f4952181af2d430f78a5aed689d8b8a6e086cdbcbe8e12c6fd8a2bf3d0c SHA512 e00738cea3d711414788605c111ecbf2bbeaeaedd2be785f5b560b9261095166986e1f9ffaf13c85f98c9e93db1b48099d873fba02b68450e90fd9df283d0033 @@ -15,6 +16,7 @@ EBUILD votca-tools-1.5.ebuild 1111 BLAKE2B 7d7a5ffeaf4e422a0470849899f539dd52576 EBUILD votca-tools-1.6.1.ebuild 817 BLAKE2B 886d69847684d81e7911f164f64d5f211f076ead9346ecb8d9246fd14c2258164b450c23e8f7ccc65ad81e050213fab954e7abf1f98eae515da66fc79eb6e2df SHA512 a6cd383d0c5daf4fcece67e19daf5af8887bc95651fd3e81c57435102bd6ee169c36c91e0eb15c5a8229f889ee647f7204c839afab9ae0ffef14d10bbc82950e EBUILD votca-tools-1.6.2.ebuild 794 BLAKE2B c8529cd9bdddbe568af6591be7b4f93329c66ca1ab425b93c5be0caa3edc2125463f6d92e0a495383f463c0e94921a7e72f17676a42638e57b002681664be47d SHA512 85f80d3fc81b36b5f77af3ffc0128312cce62791f6edeb717a62ad09109948e2ee990ce13461c453f800c89e42bb7e367cbbcaa3cf7a94fa937502bc4bfffd42 EBUILD votca-tools-1.6.3.ebuild 794 BLAKE2B c8529cd9bdddbe568af6591be7b4f93329c66ca1ab425b93c5be0caa3edc2125463f6d92e0a495383f463c0e94921a7e72f17676a42638e57b002681664be47d SHA512 85f80d3fc81b36b5f77af3ffc0128312cce62791f6edeb717a62ad09109948e2ee990ce13461c453f800c89e42bb7e367cbbcaa3cf7a94fa937502bc4bfffd42 +EBUILD votca-tools-1.6.4.ebuild 794 BLAKE2B c8529cd9bdddbe568af6591be7b4f93329c66ca1ab425b93c5be0caa3edc2125463f6d92e0a495383f463c0e94921a7e72f17676a42638e57b002681664be47d SHA512 85f80d3fc81b36b5f77af3ffc0128312cce62791f6edeb717a62ad09109948e2ee990ce13461c453f800c89e42bb7e367cbbcaa3cf7a94fa937502bc4bfffd42 EBUILD votca-tools-1.6.ebuild 813 BLAKE2B ba3aff5691b6f18973e90a3e82b514025270d7f36b4923fb7a9a03f179865be5fcd9d8eb8527072d7610933812376fc74826160245ac19d9200d2e5d907a6e43 SHA512 09980284f2408c9f356ad5ba84ccfa1a89c9199bc01f90b028de1f426acd14f0085493b21ef3eccd9eb74f3bf678501cbf4d681f2da08a5b5be42d427ab6b129 EBUILD votca-tools-1.6_rc1.ebuild 843 BLAKE2B 4976b22179417bb91f1017914ca0ca15c67622e2f312106ef18c8cf14670e271a18f01e73387906d4ae6cfdcc7247080ecbb4a0ac785c0c137c77d0254f40f83 SHA512 7ebf2cc13b9773d32baf4dd09562ead1a82aa0772c2cf666e54d9dfc135da10d2e2a328d8b94740ff04c86753f8927c64407dccaecd0a3c38d9751631950e018 EBUILD votca-tools-9999.ebuild 794 BLAKE2B c8529cd9bdddbe568af6591be7b4f93329c66ca1ab425b93c5be0caa3edc2125463f6d92e0a495383f463c0e94921a7e72f17676a42638e57b002681664be47d SHA512 85f80d3fc81b36b5f77af3ffc0128312cce62791f6edeb717a62ad09109948e2ee990ce13461c453f800c89e42bb7e367cbbcaa3cf7a94fa937502bc4bfffd42 diff --git a/sci-libs/votca-tools/votca-tools-1.6.4.ebuild b/sci-libs/votca-tools/votca-tools-1.6.4.ebuild new file mode 100644 index 000000000000..a636260d8800 --- /dev/null +++ b/sci-libs/votca-tools/votca-tools-1.6.4.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +CMAKE_MAKEFILE_GENERATOR="ninja" + +inherit cmake eutils multilib + +if [ "${PV}" != "9999" ]; then + SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux" + S="${WORKDIR}/${P#votca-}" +else + inherit git-r3 + EGIT_REPO_URI="https://github.com/${PN/-//}.git" + KEYWORDS="" +fi + +DESCRIPTION="Votca tools library" +HOMEPAGE="http://www.votca.org" + +LICENSE="Apache-2.0" +SLOT="0" +IUSE="" + +RDEPEND=" + dev-libs/boost:= + dev-libs/expat + >=dev-cpp/eigen-3.3 + sci-libs/fftw:3.0" + +DEPEND="${RDEPEND} + >=app-text/txt2tags-2.5 + virtual/pkgconfig" + +DOCS=( NOTICE ) + +src_configure() { + mycmakeargs=( + -DWITH_RC_FILES=OFF + ) + cmake_src_configure +} diff --git a/sci-libs/xdrfile/Manifest b/sci-libs/xdrfile/Manifest index d739061b4b03..22a3f9f4e535 100644 --- a/sci-libs/xdrfile/Manifest +++ b/sci-libs/xdrfile/Manifest @@ -1,5 +1,3 @@ -DIST xdrfile-1.1.1.tar.gz 378942 BLAKE2B 21b1524a7c31e957b28b93dab4b83b88c183528e534864b06ff76e3f31422129c22ac4bc24a054749dd1b5b80d93a82d873cae82571f0b89c16d55ef0de267c7 SHA512 bff06b08e547b956825f9b16a55fe93d07ff0c529426b892fd4b39be538774aa06facffc68994215e22e36edfa5642674653022da0762ca7cd1b7bc654112868 DIST xdrfile-1.1.4.tar.gz 815342 BLAKE2B 9f2703cdd67dd6cb3156ab96e496dd4fa37d3a60d660da0a6129562ed295bb52ed5d5acb54aab1bd8b682e31f6155e96541dd47fee7226ae058d62f6efe3937a SHA512 70352efcce989172893e34855edd17990c80f3b5f956b2d8b03a5e75593280e981a56b00616adb950a7da5713729029aecb5dd2cd4c52a658a77eca43aa290df -EBUILD xdrfile-1.1.1.ebuild 597 BLAKE2B 95ee6146aa52f9f1d0b3a0d73bc834ffae55c6f1f779408c105e52d8ec864f6e26de74422fd52a4717491c608519f2043ee733662743b1fee543997a98127475 SHA512 ab0156c4e760395f0320e640e5f452edab209da13abcb496717bfabaa03c86d001e30bdc4e1365eb18ed58dc287199b724635c304a72d5b6763df826dc37dae6 EBUILD xdrfile-1.1.4.ebuild 557 BLAKE2B cfccc6a0b3a33e481c092446327629c35be98b27cfd66d2dc8b153d17836dc323cf5f58a9905c6f9781ec3a6fe85a26e977406f74fa75ed3fcbf049778730da8 SHA512 3fe38726ad5002a1164e3e10575adba57b94c9b9591f6f690fec9f6bb9e19d5094f5511c5eed8004c4434917ed8bff7b4d880480ce046123bb8a04ae589ad79a MISC metadata.xml 373 BLAKE2B f02aa6fee8d485b12b280def0754651f3831474773215f4b20002544e84575dab97ba478adbd6031a9545482576783e854f69e69deb7df27fcdb14e1128587b1 SHA512 e8817074c54b6f66a21bbb69f4c5cc51e28282dd23e10f322b6e676a1859d47fbef3baea4b55d4f343517ae4de9bda3a009ed76b49ebdf898d875f29b13083ac diff --git a/sci-libs/xdrfile/xdrfile-1.1.1.ebuild b/sci-libs/xdrfile/xdrfile-1.1.1.ebuild deleted file mode 100644 index 8994b56ef506..000000000000 --- a/sci-libs/xdrfile/xdrfile-1.1.1.ebuild +++ /dev/null @@ -1,23 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_NEEDED="fortran" - -inherit autotools-multilib fortran-2 - -DESCRIPTION="Library to read gromacs trajectory and topology files" -HOMEPAGE="http://www.gromacs.org/Developer_Zone/Programming_Guide/XTC_Library" -SRC_URI="ftp://ftp.gromacs.org/pub/contrib/${P}.tar.gz" - -LICENSE="LGPL-3" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux" -IUSE="fortran static-libs" - -src_configure() { - local myeconfargs=( $(use_enable fortran) ) - - autotools-multilib_src_configure -} diff --git a/sci-libs/xkaapi/Manifest b/sci-libs/xkaapi/Manifest deleted file mode 100644 index 4286af7b20ee..000000000000 --- a/sci-libs/xkaapi/Manifest +++ /dev/null @@ -1,8 +0,0 @@ -AUX xkaapi-2.1-ffi.patch 794 BLAKE2B 72650c0ec253276f7d89fbaa627735e242f3e1df4cb9412d705bd403c2f1d6ffa66e4be4d37f391ffac1ac8756047ed18fd9ea7aa2b0a13c3530e44ab5e456b6 SHA512 7e99e72fa025659b5598583c4cad556888ca5424b3f41409b07aa1b4268a33cc379748f3181788ff9695433af16c21d69dca6dfddc15fb6071321f21bc80b9eb -AUX xkaapi-2.1-flags.patch 1324 BLAKE2B 49b2aef9894417b05f7ec6d4677c67bd52bcb46129ebf616eabaed3af3ea24563141c41b7456e3c16ef20109a4f22f1fda69e2e9c370702743610ddb92fc5b7f SHA512 cc812130893bcf39e9c20f641e7744be7caa6e6918d195ca5d3b69b10d2a518e6b30e969e4cf6e8b6735e033858b33fc6fb1bbd347c67b87cd436980a0dead0f -AUX xkaapi-3.0.3-flags.patch 1141 BLAKE2B 89ab53d83fb5b3feba3b49e47093fdd037a3c46ea0514fec9d90e486628d68838819ea1a0e175583414d582503f18be7d87bbbe0937218c3997e94be96cfad3f SHA512 8e516bd96c9f59856d3f2e7e8e4c7703cbe4281e37b57ce2b5ace9e62175c7837fb6ae140fdb760f0b89f13c9469ba201c674f38c2b51691ee1a66f0d2c5defc -DIST xkaapi-2.2.tar.gz 2858464 BLAKE2B 909ea71e3fe86ee6614724793a5a41edd03151025b50e1e99dcf262be9022dfdc8cfef636de4814db1fec99e97015b73f4e5ed8f45ad377e4a3a4ab46b54ee93 SHA512 1be98c4e3c50cf198ec3522c7ccbe7757464889b32fb39e53447548fc2975e727fb2b68b25ae99c367b155588b1ab2181e3280d099ceb991929aa2f0e9c83f0c -DIST xkaapi-3.0.3.tar.gz 1535482 BLAKE2B 6f10395b66d334e235df8dec7cfa4fa128aceeac10846e78c02cc96867fb2c649a0dc88f6a64d9c5afbfb97a02221f4e6971f313bb6ca52d217aae39caa26327 SHA512 28fb02a73269e55eec90b5c2c82e4ade3bfb24d55a1f61ac6bf47da4c7e2d864cfa1389772baca9ebef4f24b3373fb6971f3fe98a4d232187e9d29a88110eda1 -EBUILD xkaapi-2.2.ebuild 1226 BLAKE2B 8da6ea7a4d8b57c1d04c2aa95327549ccfa4771330b07cbe9b28f2e02ef6ec5c83bd4ac22b1c0d77ddcc24a67e308688f2c9394c8155cf440f90eefacc6c2463 SHA512 6a172bd57cd1d0dcb8925ef9fa021c1962dfc0d3d30ea435dc42483e5b0be479574c71b1476741a700f78b7d3a7f800bf1e15ff3319faabdd64e8ff352dd69e6 -EBUILD xkaapi-3.0.3.ebuild 1044 BLAKE2B 37e637d56e7e117b25f3e9850aeaaef708d4fd244801618fc5115dfac494b54a8e0cfb490f47b5b2496bfb1b344c872aa257f14d36dd082fbb29b2a99a4b2f5d SHA512 92ca7883d124e5f9a9529b1e8bded15a9f22bb659af3ee5f6e46578f0be774285e5c1c7ae90d82fb36d1f3bd5918cf4a20cd5cf07ffcc9d6edca10402ded1368 -MISC metadata.xml 393 BLAKE2B 0b20ade325e20eee3e300047296b3aedfe9fca66f78f6514da288d4561c6282d57ecda4f9e912dbc4ebb34a5023b545ace898fc12cca92bc57d108979e31cc70 SHA512 a0fd2c3db31172b8cf83e02118bff28776e8c33dff45a46db79499f9dd57162d37e75982022618b1f505d260276ad5b3f74dbc8ed8db0be330a321ba8fe25e87 diff --git a/sci-libs/xkaapi/files/xkaapi-2.1-ffi.patch b/sci-libs/xkaapi/files/xkaapi-2.1-ffi.patch deleted file mode 100644 index 485b6c21a969..000000000000 --- a/sci-libs/xkaapi/files/xkaapi-2.1-ffi.patch +++ /dev/null @@ -1,24 +0,0 @@ - configure.ac | 8 ++++---- - 1 file changed, 4 insertions(+), 4 deletions(-) - -diff --git a/configure.ac b/configure.ac -index 2be95ec..13e876b 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -1034,12 +1034,12 @@ dnl ----------------------------------------------------------------------- - - dnl we need to always configure imported-soft/libffi in order to be able - dnl to run "make dist" --#if test x"$use_ffi" = xinternal; then -+if test x"$use_ffi" = xinternal; then - mkdir -p "imported-soft/libffi" - AC_CONFIG_SUBDIRS([imported-soft/libffi]) --#else --# AC_MSG_NOTICE([Not compiling embedded copy of libffi]) --#fi -+else -+ AC_MSG_NOTICE([Not compiling embedded copy of libffi]) -+fi - - dnl ----------------------------------------------------------------------- - dnl Dependencies between libs diff --git a/sci-libs/xkaapi/files/xkaapi-2.1-flags.patch b/sci-libs/xkaapi/files/xkaapi-2.1-flags.patch deleted file mode 100644 index a22cabf9e4dd..000000000000 --- a/sci-libs/xkaapi/files/xkaapi-2.1-flags.patch +++ /dev/null @@ -1,39 +0,0 @@ - configure.ac | 11 ++++++++++- - 1 file changed, 10 insertions(+), 1 deletion(-) - -diff --git a/configure.ac b/configure.ac -index c3364aa..2a734fe 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -82,6 +82,9 @@ AC_PROG_F77 - dnl ---------------------------------------------------------------- - dnl Disable default flag for compilation - dnl ---------------------------------------------------------------- -+CPPFLAGS_gentoo="${CPPFLAGS}" -+CFLAGS_gentoo="${CFLAGS}" -+CXXFLAGS_gentoo="${CXXFLAGS}" - CPPFLAGS="" - CFLAGS="" - CXXFLAGS="" -@@ -407,7 +410,7 @@ AC_ARG_ENABLE([mode],[AS_HELP_STRING([--enable-mode], - [choose special compilation mode (debug, release)])],[], - [enable_mode=default] - ) --clean_default_flags -+clean_default_flags=no - AS_CASE([$enable_mode], - [default], [dnl - AM_CPPFLAGS="$AM_CPPFLAGS" -@@ -428,6 +431,12 @@ AS_CASE([$enable_mode], - AM_CFLAGS="$AM_CFLAGS -O3 -DNDEBUG" - AM_CXXFLAGS="$AM_CXXFLAGS -O3 -DNDEBUG" - clean_default_flags=yes -+ ], [gentoo], [dnl -+ AC_MSG_NOTICE([Using gentoo compile mode]) -+ AM_CPPFLAGS="$AM_CPPFLAGS ${CPPFLAGS_gentoo}" -+ AM_CFLAGS="$AM_CFLAGS -DNDEBUG ${CFLAGS_gentoo}" -+ AM_CXXFLAGS="$AM_CXXFLAGS -DNDEBUG ${CXXFLAGS_gentoo}" -+ clean_default_flags=yes - ], [dnl - AC_MSG_ERROR([Unknown compilation mode '$enable_mode'. Aborting.]) - ]) diff --git a/sci-libs/xkaapi/files/xkaapi-3.0.3-flags.patch b/sci-libs/xkaapi/files/xkaapi-3.0.3-flags.patch deleted file mode 100644 index 0fdad94cb9b9..000000000000 --- a/sci-libs/xkaapi/files/xkaapi-3.0.3-flags.patch +++ /dev/null @@ -1,31 +0,0 @@ - configure.ac | 11 ++++++++++- - 1 file changed, 10 insertions(+), 1 deletion(-) - -diff --git a/configure.ac b/configure.ac -index c3364aa..2a734fe 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -82,6 +82,9 @@ AC_PROG_F77 - dnl ---------------------------------------------------------------- - dnl Disable default flag for compilation - dnl ---------------------------------------------------------------- -+CPPFLAGS_gentoo="${CPPFLAGS}" -+CFLAGS_gentoo="${CFLAGS}" -+CXXFLAGS_gentoo="${CXXFLAGS}" - CPPFLAGS="" - CFLAGS="" - CXXFLAGS="" -@@ -428,6 +431,13 @@ AS_CASE([$enable_mode], - AM_CXXFLAGS="$AM_CXXFLAGS -O3 -DNDEBUG" - clean_default_flags=yes - AM_CONDITIONAL([KAAPI_USE_DEBUG], [test "$enable_mode" = truc ]) -+ ], [gentoo], [dnl -+ AC_MSG_NOTICE([Using gentoo compile mode]) -+ AM_CPPFLAGS="$AM_CPPFLAGS ${CPPFLAGS_gentoo}" -+ AM_CFLAGS="$AM_CFLAGS -DNDEBUG ${CFLAGS_gentoo}" -+ AM_CXXFLAGS="$AM_CXXFLAGS -DNDEBUG ${CXXFLAGS_gentoo}" -+ clean_default_flags=yes -+ AM_CONDITIONAL([KAAPI_USE_DEBUG], [test "$enable_mode" = gentoo ]) - ], [dnl - AC_MSG_ERROR([Unknown compilation mode '$enable_mode'. Aborting.]) - ]) diff --git a/sci-libs/xkaapi/metadata.xml b/sci-libs/xkaapi/metadata.xml deleted file mode 100644 index 80199bef1f06..000000000000 --- a/sci-libs/xkaapi/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci@gentoo.org</email> - <name>Gentoo Science Project</name> - </maintainer> - <use> - <flag name="blas">Kaapi BLAS tasks for PLASMA</flag> - <flag name="gpu">Build library for gpu threading</flag> - </use> -</pkgmetadata> diff --git a/sci-libs/xkaapi/xkaapi-2.2.ebuild b/sci-libs/xkaapi/xkaapi-2.2.ebuild deleted file mode 100644 index 951d383e8c02..000000000000 --- a/sci-libs/xkaapi/xkaapi-2.2.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_NEEDED=fortran -AUTOTOOLS_AUTORECONF=true - -inherit autotools-utils fortran-2 - -UPSTREAM_NO=33666 - -DESCRIPTION="Kernel for Adaptative, Asynchronous Parallel and Interactive programming" -HOMEPAGE="http://kaapi.gforge.inria.fr" -SRC_URI="https://gforge.inria.fr/frs/download.php/${UPSTREAM_NO}/${P}.tar.gz" - -SLOT="0" -LICENSE="CeCILL-2" -KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" -IUSE="blas cxx fortran gpu openmp static-libs" - -RDEPEND=" - sys-apps/hwloc - dev-libs/libffi -" -DEPEND="${RDEPEND} -" - -PATCHES=( - "${FILESDIR}"/${PN}-2.1-flags.patch - "${FILESDIR}"/${PN}-2.1-ffi.patch - ) - -src_prepare() { - sed \ - -e 's:-Werror::g' \ - -i tests/testsuite* tests/*/*.am || die - autotools-utils_src_prepare -} - -src_configure() { - local myeconfargs=( - --enable-mode=gentoo - --enable-api-kaapic - --enable-api-quark - --with-ccache=no - --enable-hwloc - --with-libffi="${EPREFIX}"/usr - --enable-target$(usex gpu gpu mt) - $(use_enable fortran api-kaapif) - $(use_enable cxx api-kaapixx) - $(use_enable blas kblas) - $(use_enable openmp libkomp) -# $(use_with plasma "${EPREFIX}"/usr) - ) - autotools-utils_src_configure -} diff --git a/sci-libs/xkaapi/xkaapi-3.0.3.ebuild b/sci-libs/xkaapi/xkaapi-3.0.3.ebuild deleted file mode 100644 index a7c8c25b27ac..000000000000 --- a/sci-libs/xkaapi/xkaapi-3.0.3.ebuild +++ /dev/null @@ -1,51 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_NEEDED=fortran -AUTOTOOLS_AUTORECONF=true - -inherit autotools-utils fortran-2 - -UPSTREAM_NO=34360 - -DESCRIPTION="Kernel for Adaptative, Asynchronous Parallel and Interactive programming" -HOMEPAGE="http://kaapi.gforge.inria.fr" -SRC_URI="https://gforge.inria.fr/frs/download.php/${UPSTREAM_NO}/${P}.tar.gz" - -SLOT="0" -LICENSE="CeCILL-2" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="cxx fortran openmp static-libs" - -RDEPEND=" - sys-apps/hwloc - dev-libs/libffi -" -DEPEND="${RDEPEND} -" - -PATCHES=( - "${FILESDIR}"/${P}-flags.patch - ) - -src_prepare() { - sed \ - -e 's:-Werror::g' \ - -i tests/testsuite* tests/*/*.am || die - autotools-utils_src_prepare -} - -src_configure() { - local myeconfargs=( - --enable-mode=gentoo - --enable-api-quark - --with-ccache=no - $(use_enable fortran api-kaapif) - $(use_enable cxx api-kaapixx) - $(use_enable openmp libkomp) -# $(use_with plasma "${EPREFIX}"/usr) - ) - autotools-utils_src_configure -} |