diff options
Diffstat (limited to 'sci-libs')
| -rw-r--r-- | sci-libs/Manifest.gz | bin | 44405 -> 44400 bytes | |||
| -rw-r--r-- | sci-libs/hipSPARSE/Manifest | 2 | ||||
| -rw-r--r-- | sci-libs/hipSPARSE/hipSPARSE-5.1.3.ebuild | 2 | ||||
| -rw-r--r-- | sci-libs/libcifpp/Manifest | 5 | ||||
| -rw-r--r-- | sci-libs/libcifpp/libcifpp-5.0.5.ebuild | 33 | ||||
| -rw-r--r-- | sci-libs/libcifpp/metadata.xml | 3 | ||||
| -rw-r--r-- | sci-libs/rocSPARSE/Manifest | 2 | ||||
| -rw-r--r-- | sci-libs/rocSPARSE/rocSPARSE-5.1.3.ebuild | 2 |
8 files changed, 44 insertions, 5 deletions
diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz Binary files differindex 0c0d059e74c2..c7df54f3473a 100644 --- a/sci-libs/Manifest.gz +++ b/sci-libs/Manifest.gz diff --git a/sci-libs/hipSPARSE/Manifest b/sci-libs/hipSPARSE/Manifest index 5cbc73cb532e..0e69cb5010fd 100644 --- a/sci-libs/hipSPARSE/Manifest +++ b/sci-libs/hipSPARSE/Manifest @@ -26,5 +26,5 @@ DIST rocSPARSE_webbase-1M.tar.gz 11360460 BLAKE2B 01b1d06adb5fb32fa402ed888d25a7 EBUILD hipSPARSE-4.0.0-r2.ebuild 1140 BLAKE2B 9344f8e3678a855fca42b5c14fae5d0973ed3f8922836182d9327d1724e92feca6072933df181228ef95cc4993fc8a7797ebf31fac8a5a95eabe8f3de9165ac5 SHA512 e682f1acb67c282c638fd7594b0268a3dc7a33b71fe667f8bd38fc90449660367f94d1964037c0fbe3dd162e5c8a5a4aa941ec72a7353c2f629ed9f07ca06d6b EBUILD hipSPARSE-4.3.0-r2.ebuild 3709 BLAKE2B eda9d93375d8a3db0da922d615224d27d1e2048c03718c0f77212b09838a3d0627b1dd13025de51bb0779fb99404b1f5b2f65fe1882b26f499dd98b302c99107 SHA512 e11817f8844084bbc129d392c167f9606590a5f23fd35b49bf8586f08ef53616373228524da996ad0539b859619f0384700da423bd1943ef6922c628b6ff0a84 EBUILD hipSPARSE-5.0.2.ebuild 3709 BLAKE2B 57334096115755129d2f97628a7ee0f65eb27b7905a6daa8c01691f8c6e23114fa996437aa5e00b865997d8580d033c3b038dcc75ad07c78b150cfbc34e5cd50 SHA512 96a293fd1643f3d004206573a6ae47ca4450b13ce8e4e93309dee2777f8c1e28032aef98477ca7b4fb26a3a52c0e3b50d8ddeda1fc6f9767a727889b6b9670a6 -EBUILD hipSPARSE-5.1.3.ebuild 3491 BLAKE2B c5d0e287556b118424ad13fcd3305c9f5bc8ab62cb7d4fa69f5e7869d3605c30888b74c6501d8af9dc5c026456b3c6229525f3236a2651f4c2befd7476537f35 SHA512 7aaa9b204142bbdba348a669ce24b8219f78e03485d87afd273243df3bd21003d470729653a7902bf71b94be423bd15fd47c71eecd3051d92379fb23953e6d31 +EBUILD hipSPARSE-5.1.3.ebuild 3493 BLAKE2B b5b00b823b380cd5b85f20e76b75c700ec6195b73ecc995dde2e38f9c4cebf245d2829886fe8e4ee552ccf20ec47035ea81868469d176a0266b3b8725a67e4cb SHA512 463d3096205e813703a3291e2093d5cc34cc233ad13c994357e64d9b5cedc2c217787310ab89cb5bff1a4a73d5de567f98fb03eb1571834cb28ebd55513f54bb MISC metadata.xml 603 BLAKE2B 21c5f53de40b5582b8541e1cef239a4a2eff2eaaaa966a4168439417cd6f80ea00dbd48636bea73aedbaaf580950803768f02ab5f0cca0f76d433d80a80026e1 SHA512 4ff1ebefa7203326a5c2feed7c0deffa10f17383bb4a05fdf3057d8ab1d6f8427a45126ec17aa88e02a93e9114e79f6d89cd4564e72faebf970b7f63814d701a diff --git a/sci-libs/hipSPARSE/hipSPARSE-5.1.3.ebuild b/sci-libs/hipSPARSE/hipSPARSE-5.1.3.ebuild index 5962bd36caa1..d6354b8d77be 100644 --- a/sci-libs/hipSPARSE/hipSPARSE-5.1.3.ebuild +++ b/sci-libs/hipSPARSE/hipSPARSE-5.1.3.ebuild @@ -68,7 +68,7 @@ src_prepare() { mkdir -p "${BUILD_DIR}"/clients/matrices # compile and use the mtx2bin converter. Do not use any optimization flags! edo $(tc-getCXX) deps/convert.cpp -o deps/convert - find "${WORKDIR}" -maxdepth 2 -regextype egrep -regex ".*/(.*)/\1\.mtx" -print0 | + find "${WORKDIR}" -maxdepth 2 -regextype grep -E -regex ".*/(.*)/\1\.mtx" -print0 | while IFS= read -r -d '' mtxfile; do destination=${BUILD_DIR}/clients/matrices/$(basename -s '.mtx' ${mtxfile}).bin ebegin "Converting ${mtxfile} to ${destination}" diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest index 9dcd966c7226..915ab9f57159 100644 --- a/sci-libs/libcifpp/Manifest +++ b/sci-libs/libcifpp/Manifest @@ -2,6 +2,9 @@ DIST components-2.0.4.cif.gz 81445161 BLAKE2B 80d538109a716af0273d109151a434e68c DIST components-3.0.0.cif.gz 82114845 BLAKE2B 9934110efb9848e8b71e75173bf9c8cfeec1daeef45648296dbcc41641308b9c4e6ff2ef16d86b44ebdb0a200fe6f2a8f13dadac1cce4d8ea2a2961927bf4c94 SHA512 625478378d236ec46130d83545c1b0fbdfb5e9cada3834ac14d4b052e9e460e73523e4438b3356a78d64f569e12cd4c13439b5de56462a10d5c11d0de09d52b8 DIST libcifpp-2.0.4.tar.gz 960402 BLAKE2B 4650478b187ece13d38c0a5f13c94e6098e3271088a7dd19d72645d52d085304a463387f9d1b1edacbcd03a051b32fbf2384e3287d5ff4835091f2eae2fe2805 SHA512 f4a6b126b376b245d399508e9bc360bcf0451e6bd3cad3127567dd95afb1965c8eb764bb9b0bf26be26695fc5636e509709bdbc9f8c9a00939d049c1634dcae0 DIST libcifpp-3.0.0.tar.gz 950896 BLAKE2B 8aad3ebea5cc82c2615b6dc6a8a50654375dd9f58ff6c27306bf1415d9658f29f196c5ea9bf0e4f913400b3eba48f19bc11dd97c84b59cf2df94f87afb06d5b7 SHA512 507abed829e4d5194eb22fe73d261295a9814577d7bc53743731e7a1ccb032f763f4bfa0e1b23665d52fabbfa38baca20e6373c14db029705427b6fa773df976 +DIST libcifpp-5.0.5-components.cif.gz 88604747 BLAKE2B 05b914efaff697fa756a2ccd79836aa0a27a5fcf966eece7a3b5476fb37c876449047de00fea852a224b266188d00d1e5e5fa0148f24a1ae0fea01c0ad3415aa SHA512 a39144034836fbac5ff793c6a87d0e1519e63f16175357a3863d56edf2bf015af4dd6859b9afc8c8d9621c7dab752df5a8557149db2cb37983ab095a831fc2fd +DIST libcifpp-5.0.5.tar.gz 1869555 BLAKE2B 515e27aeebb5e12130649a52ac92d69bbec910ec67fef992100a785f21ee6acaf34e951b2cc430acbfc52336a88337f0b54d6ecd030d784fc3ebe2065321f813 SHA512 730d212a681009b932f61e99dcde77d89ff5ec618781abf897f5e91c103d334ca560329975d32715a2d84f02026b073f46cba3f10a1b382ff82422d49b8dd50e EBUILD libcifpp-2.0.4-r1.ebuild 734 BLAKE2B 98776f8cdb01d30fc71a59b859ac0b5a336a79771fdf0f5b953fec5b1e932745f2ed10e26f707c9ba18479546a382acc123b7f45565a6b7fc5cbfe6aea6c524f SHA512 92882477bdd15718a78a980bf00cce6b7271fc9db5d405da95a747ec0ff1b45f797949673ce0799c3a281c17c40f1fd800e24e46ce676f4038699cce692a8954 EBUILD libcifpp-3.0.0.ebuild 738 BLAKE2B e4577178cba7b208e9dde896997a131729031f916a3b9c67be5d83b8bc9b6e689940959ea132e27d399e6b9be5f3d7faae1b84de8445477c81385967013feb31 SHA512 849c3b2f65fc540bae1dd22cd4c39538728c34f5312c2dab94d9102fe9b59f0a903c60128dfba6bb791bcee5762f1d3a428f61f5190bea582a191012f35707c9 -MISC metadata.xml 217 BLAKE2B f8189b02494f180dac078dcd5c275d3c795f20f360f8b172c66065a2d937e396b24b8631bba4cd8567d60285ce89fc77b9539f2233bf33899c820613c48c33ba SHA512 f0c9e5b3d281fecd21b1e23a6f44c94c1c0b3220de46a177d35932111b7f1ab4399061c42833ac1ee9bd0324b139fc8db66e0d2890224d607bd3be38ae469be9 +EBUILD libcifpp-5.0.5.ebuild 769 BLAKE2B 4b966cb06f1f9c9a80bb21503a0b3eff294737abe32a8b56cc8125769559972a612acdad5cc48658f5822821fa0e3013fde1e3551a950777f33d9f54226612f7 SHA512 a8d9030efdd39781d34a74dab90816d929056fda484b7e1c5f9fd88ecd4a45ba09b9da2b522a51a4aa8d59116cb19057b426db3e47f691bfbea505b0714e4b8c +MISC metadata.xml 299 BLAKE2B 88091a7fbc350db0c22800bcd0de80ec406f7b8a0187b29d8660978384179f8194f7aa794bf0bd3b3f4ab68ac662ca62479319e218d2622e2a3e470653848251 SHA512 e6bc610ae1cf40584ba3067ece0c0c85d08ad0bbb99f5ecd8281c41b04ff932db838926a6ff238794ff46eb8035eb57c750e088bd3f164180952a9e597544e14 diff --git a/sci-libs/libcifpp/libcifpp-5.0.5.ebuild b/sci-libs/libcifpp/libcifpp-5.0.5.ebuild new file mode 100644 index 000000000000..6bd4f31ea362 --- /dev/null +++ b/sci-libs/libcifpp/libcifpp-5.0.5.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 +inherit cmake + +DESCRIPTION="Code to work with mmCIF and PDB files" +HOMEPAGE="https://github.com/PDB-REDO/libcifpp" +SRC_URI=" + https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz + https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.gz +" + +LICENSE="BSD-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" +RESTRICT="!test? ( test )" + +DEPEND="dev-libs/boost:=" +RDEPEND="${DEPEND}" + +src_configure() { + cp "${WORKDIR}"/${P}-components.cif data/components.cif || die + + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DCIFPP_DOWNLOAD_CCD=OFF + -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF + -DENABLE_TESTING="$(usex test)" + ) + cmake_src_configure +} diff --git a/sci-libs/libcifpp/metadata.xml b/sci-libs/libcifpp/metadata.xml index 572c7daf2ccf..403881fddf16 100644 --- a/sci-libs/libcifpp/metadata.xml +++ b/sci-libs/libcifpp/metadata.xml @@ -4,4 +4,7 @@ <maintainer type="person"> <email>pacho@gentoo.org</email> </maintainer> + <upstream> + <remote-id type="github">PDB-REDO/libcifpp</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-libs/rocSPARSE/Manifest b/sci-libs/rocSPARSE/Manifest index 2d80139552b6..b984e9d961e5 100644 --- a/sci-libs/rocSPARSE/Manifest +++ b/sci-libs/rocSPARSE/Manifest @@ -33,5 +33,5 @@ DIST rocSPARSE_webbase-1M.tar.gz 11360460 BLAKE2B 01b1d06adb5fb32fa402ed888d25a7 EBUILD rocSPARSE-4.0.0-r1.ebuild 1166 BLAKE2B fc45fdaaf8d5f20afcc0d477eac01d30100a3ac3355ddae786ee934f46ef55b4f6ac3b284875fc905f75452cbfbb655ad4cfb9f916905e1a6091e8b97a14f141 SHA512 221e3aea6c45e7d7a6edc3b96db32ed9d2deb040f1f4cafa9cbb139a146aa7500d4619e6e8db39683fed9c0bc34053dc8ede22525340457c1774f6ea90297a98 EBUILD rocSPARSE-4.3.0-r3.ebuild 4923 BLAKE2B b41130ea7ef8c145e635d31181f83fefccf769e5dc56ee5e1371eaca8fc7d4cf81e327fc3393f4d733166c7c2074b4e463430361924b110399f35dd53d4f4422 SHA512 7c69789058388aff5ce2bf207c30e811d87348e34db18ce5ceadba7cdc2d500bb6d8d42970a97bfd1c7c1f8f8facef33c9ad0f346daa46c6d09312dfe2d3c7c1 EBUILD rocSPARSE-5.0.2.ebuild 5067 BLAKE2B f58a1979616271a2ddd2b970f07a6b42118703e089431125b30cfe74dca42b145a2668f9698ee04847f9d188112646f20580d5ff8798bc5ea130ee802629ec65 SHA512 09332f3d7634d46b404c26c1184f9509d2a093f13c4830014f3661316099444a55d8e8e2c596fae8f5b8624bee1b4f204e2b3ec53537c0f990e7bb9a228bed53 -EBUILD rocSPARSE-5.1.3.ebuild 4848 BLAKE2B a33fa68ad1e2a8bb0b6dcbca0a5c7b0c83e5b0e9a8d7291ad97115d11c5c5afa073bc8ac8c484f02f551cb3f74ce0d6a0ff5001fc2cba76b44ec995136ac203e SHA512 66db4fc14fefc372f9cae3805c1a5651215c703e04c4a97c93c5b2facbcdb657d1bc3d3a2e0b195d10fb17d1f2ae262535f71351502b8d1cbc581679a1846c2b +EBUILD rocSPARSE-5.1.3.ebuild 4850 BLAKE2B 1636a91211ce3225ef7280916c6a3ede2c0b636255a94c967e5286b76bf75c906234c2f392ca576f267f1c4841d58f9e274b9e0d91780475b18f28d2b1a0beba SHA512 482fd5c2dc85020b63c06f5b3ba02892adf35dc003cf2ef1cd1ddc0f62dbcbf8c5a83495adbb98acfdfefc1bb208f5a3f14d0aa75d3f5c496b45100a71c3c03f MISC metadata.xml 695 BLAKE2B db1c67ff216cd9c9a972c9b388f85f6e762e0a7bddffca1336219ce6ebe39f6a841da4c8c78084d91f48a5bb6a26ad0047a2a1a60915da5110b3a41977f3b641 SHA512 2f246ec382d78e414a00aedcd7a2c871ccf5b74d25d160a0f7d6012feb51c6c12861b5152cac32d3e46d0d1acea7e8b10f42f4b501abb9d778cd3c886331f59c diff --git a/sci-libs/rocSPARSE/rocSPARSE-5.1.3.ebuild b/sci-libs/rocSPARSE/rocSPARSE-5.1.3.ebuild index 0ed300de5755..cb8a7d8c23fb 100644 --- a/sci-libs/rocSPARSE/rocSPARSE-5.1.3.ebuild +++ b/sci-libs/rocSPARSE/rocSPARSE-5.1.3.ebuild @@ -91,7 +91,7 @@ src_prepare() { mkdir -p "${BUILD_DIR}"/clients/matrices # compile and use the mtx2csr converter. Do not use any optimization flags, because it causes error! edo $(tc-getCXX) deps/convert.cpp -o deps/convert - find "${WORKDIR}" -maxdepth 2 -regextype egrep -regex ".*/(.*)/\1\.mtx" -print0 | + find "${WORKDIR}" -maxdepth 2 -regextype grep -E -regex ".*/(.*)/\1\.mtx" -print0 | while IFS= read -r -d '' mtxfile; do destination=${BUILD_DIR}/clients/matrices/$(basename -s '.mtx' ${mtxfile}).csr ebegin "Converting ${mtxfile} to ${destination}" |