diff options
Diffstat (limited to 'sci-misc/h5utils')
| -rw-r--r-- | sci-misc/h5utils/Manifest | 7 | ||||
| -rw-r--r-- | sci-misc/h5utils/files/h5utils-1.12.1-automagic.patch | 63 | ||||
| -rw-r--r-- | sci-misc/h5utils/files/h5utils-1.12.1-png15.patch | 43 | ||||
| -rw-r--r-- | sci-misc/h5utils/h5utils-1.12.1-r2.ebuild | 41 | ||||
| -rw-r--r-- | sci-misc/h5utils/metadata.xml | 20 |
5 files changed, 174 insertions, 0 deletions
diff --git a/sci-misc/h5utils/Manifest b/sci-misc/h5utils/Manifest new file mode 100644 index 000000000000..9804b1bedd56 --- /dev/null +++ b/sci-misc/h5utils/Manifest @@ -0,0 +1,7 @@ +AUX h5utils-1.12.1-automagic.patch 2226 SHA256 e69b005a086749e530a037f37ca5069473947bfb21b2f9dc98e470c26cc0c69c SHA512 ae8513c6c214fdd17886b65e77c707c08c97b7c72943ea0608cd8f4d269a4f2ef7df579b5746b76b307a77d68b9993860b6cce8cb6793da21123ad9892769999 WHIRLPOOL 2ee48d8bd4847570fcaa9e13daec52689458ccce9db0809933b80e4f9bffec4d7c1be426bd8a12930c835204f6934867341aa65e9b3f3f9ae930579b5b6cf679 +AUX h5utils-1.12.1-png15.patch 1420 SHA256 45e326080589e9e05da81d5a4ce15e0df5991e13f2ded1d3d34e30fa94593c7a SHA512 babc34ab9d585468dabae50d16b7cb59a9326f541c69be5f347189bc6386273a61b9ec3a8a09e00fb2da386ee1fd592f0c85d2c3290134c74d8aa5d1057bd563 WHIRLPOOL d7fd4a9f96d26a34a7e2c312a59ade3bde50ef47712c2bb1c46b4a359534101009c6f22539b4861ec8cfeca8ffc56466fef7c55532bc917c8b8bd1cf7a38d2e7 +DIST h5utils-1.12.1.tar.gz 156785 SHA256 7290290ca5d5d4451d757a70c86baaa70d23a28edb09c951b6b77c22b924a38d SHA512 b4295ac52ddfe922ed9f0a9079c69d6fdba5a261558d8c820a8feae592db3bd57a3394ab1fc9ceead00038a80bc70f32e0a8aa437cb33182899553bfdbf1f547 WHIRLPOOL c717c41545533eb0ba9f7d4813c42e3fbbec3ef292f8461ead0f0dcbe4e7530d64740dffb94cf25e839420ac4633082c06833ea5013a1a9eb276ef516d632f14 +EBUILD h5utils-1.12.1-r2.ebuild 782 SHA256 216d3227a0718003b7c39a8fef8c87595f577a07c043baca69c54ebfc994b6f3 SHA512 45c664a647f17326dc16cf28cfbfe75ad4685122ad9ccfd1ed952d6e4ed2fefd6a234875ebeccea5d063e1210eeaae5f4e3ddbe5430437ec59dff9f3c72ad29c WHIRLPOOL 0627e4bfebf9f83c2f345bf8cd957dc0687ac5dbe6c9b47567bdfc9ee1658df81939c9790f5b1e588928ac64a4e7fa077a3d922bf2a75a45551c7e9fefecc0f9 +MISC ChangeLog 2644 SHA256 1967dabd83740b5b67126ada96e75f5d50c34e3f5a8465177a5005074e57161f SHA512 fd856cf8f8a8e7f42c38a1541de4c2b94449ac6669bd29026bb6fc36ad9346df488c8b91ef86a7e057aadfce3ab97a4be25497e2f0d115d020a0c15951491f9d WHIRLPOOL 9973a8f26de96f4bc177760444bc5a64a209e621648c2b8a8b25857500c52ccc0e5f331813d9bdabee05d8420082eac4a534abb81b25c288795c69eec22fc157 +MISC ChangeLog-2015 3596 SHA256 f1f72b55ff17aa4d651d72f3f63cb5fe00f5285bc507098c2a6954663bb3a37c SHA512 b582a8c5dce6ee42b4024a29f86a9e5a40a729cbe662d71ddfd4f5c7508356a08b3e6c2151d22d59510684bcf050aa75f321892693711863d07054b43e86625a WHIRLPOOL e244545dc2583a7da0eff329a69489c2a57f6ec5ffc804e3d2556539f056f0803ccb5d94dac91ea59bb986b9dd05b610def0aeed2b329c815a8ab9828e5a063e +MISC metadata.xml 776 SHA256 5b09721d6677567cc38fe570312ecff24448c85233e24bb4a9ec22886ab119a6 SHA512 12bda28a2fd9022d8472f81afc827b1329ab84598e8a91a7170bfeffb4b55953b37a9504bffc58933c352ebbdd25beb781e570d5f8de9759a290c4476a40afd1 WHIRLPOOL f128335014d993436afc73bedda18101743f943bf271528a399e550fb107b0c5d9f71b57cf2d424e0edd25ab32950bd6668675c108a1ace5be6d065f31b8ebfa diff --git a/sci-misc/h5utils/files/h5utils-1.12.1-automagic.patch b/sci-misc/h5utils/files/h5utils-1.12.1-automagic.patch new file mode 100644 index 000000000000..8de8580cfe38 --- /dev/null +++ b/sci-misc/h5utils/files/h5utils-1.12.1-automagic.patch @@ -0,0 +1,63 @@ +--- configure.ac ++++ configure.ac +@@ -74,44 +74,23 @@ + + ########################################################################### + +-# Only build h5fromh4 if we are using a version of HDF5 prior to 1.4, and +-# thus don't have the superior h4toh5 utility. Similarly for h5toh4. +-AC_CHECK_PROG(H4TOH5, h4toh5, h4toh5) +-AC_CHECK_PROG(H5TOH4, h5toh4, h5toh4) +- +-AC_ARG_WITH(hdf4, +- [AC_HELP_STRING([--with-hdf4], [build hdf4 utils even if h4toh5 and h5toh4 are present])], +- ok=$withval, ok=maybe) +-if test "x$ok" = xyes; then +- H4TOH5="" +- H5TOH4="" +-elif test "x$ok" = xno; then +- H4TOH5="h4toh5" +- H5TOH4="h5toh4" +-fi +- +-HDF4=no +-if test "x$H4TOH5" != xh4toh5 -o "x$H5TOH4" != xh5toh4; then +- AC_CHECK_LIB(jpeg, jpeg_start_compress, +- [AC_CHECK_LIB(df, DFSDgetdata, +- [H4_LIBS="-ldf -ljpeg"; HDF4=yes], +- [AC_MSG_WARN([can't find libdf (HDF4): won't be able to compile h5fromh4 or h4fromh5])], -ljpeg)], +- [AC_MSG_WARN([can't find libjpeg: won't be able to compile h5fromh4 or h4fromh5])]) +- +- if test $HDF4 = yes; then +- if test "x$H4TOH5" != xh4toh5; then +- MORE_H5UTILS="h5fromh4\$(EXEEXT) $MORE_H5UTILS" +- MORE_H5UTILS_MANS="h5fromh4.1 $MORE_H5UTILS_MANS" +- fi +- if test "x$H5TOH4" != xh5toh4; then +- MORE_H5UTILS="h4fromh5\$(EXEEXT) $MORE_H5UTILS" +- # MORE_H5UTILS_MANS="h4fromh5.1 $MORE_H5UTILS_MANS" +- fi +- fi +-fi +-AC_CHECK_HEADERS(hdf.h hdf/hdf.h) ++AC_ARG_WITH([hdf], AS_HELP_STRING([--with-hdf], [build hdf4 utils even if h4toh5 and h5toh4 are present])) + +-AC_SUBST(H4_LIBS) ++AS_IF([test "x$with_hdf" = "xyes"], [ ++ AC_CHECK_HEADERS(hdf.h hdf/hdf.h) ++ AC_CHECK_LIB(jpeg, jpeg_start_compress, ++ [AC_CHECK_LIB(df, DFSDgetdata, ++ [H4_LIBS="-ldf -ljpeg"; HDF4=yes], ++ [AC_MSG_WARN([can't find libdf (HDF4): won't be able to compile h5fromh4 or h4fromh5])], -ljpeg)], ++ [AC_MSG_WARN([can't find libjpeg: won't be able to compile h5fromh4 or h4fromh5])]) ++ if test $HDF4 = yes; then ++ MORE_H5UTILS="h5fromh4\$(EXEEXT) $MORE_H5UTILS" ++ MORE_H5UTILS_MANS="h5fromh4.1 $MORE_H5UTILS_MANS" ++ MORE_H5UTILS="h4fromh5\$(EXEEXT) $MORE_H5UTILS" ++ fi ++ ++ AC_SUBST(H4_LIBS) ++]) + + ########################################################################### + diff --git a/sci-misc/h5utils/files/h5utils-1.12.1-png15.patch b/sci-misc/h5utils/files/h5utils-1.12.1-png15.patch new file mode 100644 index 000000000000..e611310145eb --- /dev/null +++ b/sci-misc/h5utils/files/h5utils-1.12.1-png15.patch @@ -0,0 +1,43 @@ +Fix build with png-1.5. + +https://bugs.gentoo.org/show_bug.cgi?id=378919 + +Patch stolen from NetBSD +--- writepng.c ++++ writepng.c +@@ -240,6 +240,8 @@ void writepng(char *filename, + double skewsin = sin(skew), skewcos = cos(skew); + REAL minoverlay = 0, maxoverlay = 0; + png_byte mask_byte; ++ png_colorp palette = NULL; ++ + + /* we must use direct color for translucent overlays */ + if (overlay) +@@ -309,7 +311,7 @@ void writepng(char *filename, + } + /* Set error handling. REQUIRED if you aren't supplying your own * + * error hadnling functions in the png_create_write_struct() call. */ +- if (setjmp(png_ptr->jmpbuf)) { ++ if (setjmp(png_jmpbuf(png_ptr))) { + /* If we get here, we had a problem reading the file */ + fclose(fp); + png_destroy_write_struct(&png_ptr, (png_infopp) NULL); +@@ -334,8 +336,6 @@ void writepng(char *filename, + PNG_INTERLACE_NONE, + PNG_COMPRESSION_TYPE_BASE, PNG_FILTER_TYPE_BASE); + else { +- png_colorp palette; +- + png_set_IHDR(png_ptr, info_ptr, width, height, 8 /* bit_depth */ , + PNG_COLOR_TYPE_PALETTE, + PNG_INTERLACE_NONE, +@@ -434,7 +434,7 @@ void writepng(char *filename, + png_write_end(png_ptr, info_ptr); + + /* if you malloced the palette, free it here */ +- free(info_ptr->palette); ++ free(palette); + + /* if you allocated any text comments, free them here */ + diff --git a/sci-misc/h5utils/h5utils-1.12.1-r2.ebuild b/sci-misc/h5utils/h5utils-1.12.1-r2.ebuild new file mode 100644 index 000000000000..21e5cd401489 --- /dev/null +++ b/sci-misc/h5utils/h5utils-1.12.1-r2.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_AUTORECONF=true + +inherit autotools-utils + +DESCRIPTION="Utilities for visualization and conversion of HDF5 files" +HOMEPAGE="http://ab-initio.mit.edu/h5utils/" +SRC_URI="http://ab-initio.mit.edu/h5utils/${P}.tar.gz" + +SLOT="0" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~ppc x86 ~amd64-linux ~x86-linux" +IUSE="hdf octave" + +DEPEND=" + media-libs/libpng:0= + sci-libs/hdf5:0= + sys-libs/zlib:0= + hdf? ( + sci-libs/hdf:0= + virtual/jpeg:0 + )" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}"/${P}-automagic.patch + "${FILESDIR}"/${P}-png15.patch +) + +src_configure() { + local myeconfargs=( + --without-v5d + $(use_with octave) + $(use_with hdf) + ) + autotools-utils_src_configure +} diff --git a/sci-misc/h5utils/metadata.xml b/sci-misc/h5utils/metadata.xml new file mode 100644 index 000000000000..8e79e03dfc80 --- /dev/null +++ b/sci-misc/h5utils/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci@gentoo.org</email> + <name>Gentoo Science Project</name> +</maintainer> +<longdescription> + h5utils is a set of utilities for visualization and conversion of + scientific data in the free, portable HDF5 format. + Besides providing a simple tool for batch visualization as PNG images, + h5utils also includes programs to convert HDF5 datasets into the + formats required by other free visualization software (e.g. plain + text, Vis5d, and VTK). +</longdescription> +<use> + <flag name="octave">Build Octave plugins</flag> + <flag name="hdf">Build hdf to hdf5 (and vice-versa) converter</flag> +</use> +</pkgmetadata> |