diff options
Diffstat (limited to 'sci-physics')
-rw-r--r-- | sci-physics/Manifest.gz | bin | 5873 -> 5873 bytes | |||
-rw-r--r-- | sci-physics/root/Manifest | 10 | ||||
-rw-r--r-- | sci-physics/root/files/root-6.00.01-llvm.patch | 13 | ||||
-rw-r--r-- | sci-physics/root/files/root-6.00.01-nobyte-compile.patch | 33 | ||||
-rw-r--r-- | sci-physics/root/files/root-6.02.05-xrootd4.patch | 11 | ||||
-rw-r--r-- | sci-physics/root/files/root-6.04.06-gsl2.patch | 58 | ||||
-rw-r--r-- | sci-physics/root/files/root-6.04.06-prop-flags.patch | 22 | ||||
-rw-r--r-- | sci-physics/root/files/root-6.12.04-find-oracle-12.patch | 34 | ||||
-rw-r--r-- | sci-physics/root/files/root-6.12.04-no-ocaml.patch | 49 | ||||
-rw-r--r-- | sci-physics/root/files/root-6.12.04-z3.patch | 39 | ||||
-rw-r--r-- | sci-physics/root/root-6.12.04-r1.ebuild (renamed from sci-physics/root/root-6.12.04.ebuild) | 15 |
11 files changed, 131 insertions, 153 deletions
diff --git a/sci-physics/Manifest.gz b/sci-physics/Manifest.gz Binary files differindex dcfbc909f8a1..3cc7d9eb7694 100644 --- a/sci-physics/Manifest.gz +++ b/sci-physics/Manifest.gz diff --git a/sci-physics/root/Manifest b/sci-physics/root/Manifest index f0086626a80a..08f4ec037fff 100644 --- a/sci-physics/root/Manifest +++ b/sci-physics/root/Manifest @@ -9,16 +9,14 @@ AUX root-5.34.05-nobyte-compile.patch 5504 BLAKE2B 052cc5ebd1fae7d439244ccf9f343 AUX root-5.34.13-unuran.patch 1555 BLAKE2B b476c0f00dd0bfc1f6a6fc63957794cc932fc1e747b5900a0e4b5e2142b3a71b0fe3076591134b46df724b8f9ff5820064bc9cf1e1af4be2a77fb0414f28722c SHA512 571d6bd56d2419e4b96f7ca95d14d291768cc98024f871ca35bfae1a7d1e010a7c101f927c66ece4c006ca89401aeaea89945b8502f1ae2b2068f535d0bc95f3 AUX root-5.34.26-ldflags.patch 626 BLAKE2B 3c3b8bf4d173afd6024843c0e125d8b64868f367de96775e23ae21ee6adc7fb294700372eb4a3743178728ef947fbaa18e1f3c18ca5731931ed0c1a7b1ab580c SHA512 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37d78c57b05a20088794cf887d60514c932b6b11b2a918b4b2621700be281df80adf3f17d76da17a146e4e941bf472a0a1ddcbbf14406e5d49bd3b8e4dbf3c50 +AUX root-6.12.04-z3.patch 1155 BLAKE2B 31d099bb260a030d88fcfbe0c9c5a7953738619b216da4140e087b29fead0bfd05bd22aa75da99521689decfb54caa23e0b50a9be9c34fe2fd75596b99b13092 SHA512 ca82ed6f3a0eb9e0ae13a0c354eab0a7c9c18e93ef444418f5786decdd8600184a6c2d5deb6d54d1a852076988645a0fbd215459cd15f5569f54606d74ee3e18 AUX rootd.confd 199 BLAKE2B d7638f5ee8ccb4fcb428d07c59d776a9ab8773fa8a8911281e8f76b32fab5902e3f6f6086ad210af39480df514c947719cc5e76d29c7dbf2a8715ae58ef49880 SHA512 2ce6753d37a7f22cc3656f110f802b8e07c1469bfe4524606c1472369352f8c584c01c716760252fab40369470b72d8c77cdbb2d52126c39371faaf597bf58d8 AUX rootd.initd 622 BLAKE2B 7edeaf3cf550303642a89eb69edb65e6625215ac2daae5766904bcc14f1b30f6277c6eac6b895f46fbda01656df80cb71fdad6294a19bf581badceaa29278fdf SHA512 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52fee9354448cb8b471e28ff4ee2a552a975f36d9b6efc3af1b0e3e83a554dc406c502348ea49bbbbec82cf86cbeb9ed7d6df01645a31e4f5211c665abb27dfd -EBUILD root-6.12.04.ebuild 9914 BLAKE2B c236344e2f1934049cdcb275fe679ac6ff43dc26c3bd6754106bdc9118e53df89ebd350334f05a3e76a4ef9241cc8a3325a67e4061a3c271e09dc4bc2333e1b9 SHA512 6418593633fab1a8a64ce7adc0ace86d892bd70df0058eea70ff0ab4f39fb6f2b46e0dacbe8f6c8fb0fa42a00521aed3841a53b3641e30967bdfab9a7e5f708e +EBUILD root-6.12.04-r1.ebuild 9915 BLAKE2B 0a5fa19d389f26fec7af03427c2bc7458daf7358b1ed8ed894dd0592f5aba4d8fc5b2182393692c2abf73ace6f80445fee058f6f430e81f5ae5eeef53ec09989 SHA512 f5eea751b2c20df1e0d0a70771c1e2194a39ca647a5508786c0fdaebd7c634f400cdd42ebb80d03547900f85626c19eee87f99ba36669c8790a8bd20f89b9cf0 MISC metadata.xml 3238 BLAKE2B 0396ebafbf0bd14c88f7ba401f12f698ccca313c0c04cab46f9fa198681b0f305f21413bab8a86c97bb65e0bbe00eb6b6f488600402784109dc13ed196d6589b SHA512 2ba887003b3dc6dc3d4de379ec9dde8a7ba8144c2bbd7be50ebcfc7b3bfb3154733edd39007fcd8c380034d028a0d3f352e4cb973d8facd9412f38f820c16b1e diff --git a/sci-physics/root/files/root-6.00.01-llvm.patch b/sci-physics/root/files/root-6.00.01-llvm.patch deleted file mode 100644 index c6abb353ee64..000000000000 --- a/sci-physics/root/files/root-6.00.01-llvm.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/interpreter/llvm/src/Makefile.config.in b/interpreter/llvm/src/Makefile.config.in -index 7633be2..c8756b1 100644 ---- a/interpreter/llvm/src/Makefile.config.in -+++ b/interpreter/llvm/src/Makefile.config.in -@@ -170,6 +170,8 @@ CXXFLAGS += @CXXFLAGS@ - - # Linker flags. - LDFLAGS += @LDFLAGS@ -+NOUNDEF := -Wl,--no-undefined -+LDFLAGS := $(filter-out $(NOUNDEF),$(LDFLAGS)) - - # Path to the library archiver program. - AR_PATH = @AR@ diff --git a/sci-physics/root/files/root-6.00.01-nobyte-compile.patch b/sci-physics/root/files/root-6.00.01-nobyte-compile.patch deleted file mode 100644 index aa58f20686dc..000000000000 --- a/sci-physics/root/files/root-6.00.01-nobyte-compile.patch +++ /dev/null @@ -1,33 +0,0 @@ -diff -Naur root.as-needed/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk ---- root.as-needed/bindings/pyroot/Module.mk 2011-07-10 10:42:48.991561304 +0400 -+++ root/bindings/pyroot/Module.mk 2011-07-10 10:43:21.493339703 +0400 -@@ -48,8 +48,6 @@ - ROOTPY := $(subst $(MODDIR),$(LPATH),$(ROOTPYS)) - $(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@ - endif --ROOTPYC := $(ROOTPY:.py=.pyc) --ROOTPYO := $(ROOTPY:.py=.pyo) - - # used in the main Makefile - ALLHDRS += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH)) -@@ -68,10 +66,8 @@ - include/%.h: $(PYROOTDIRI)/%.h - cp $< $@ - --%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )' --%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )' - --$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \ -+$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) \ - $(ROOTLIBSDEP) $(PYTHONLIBDEP) - @$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \ - "$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \ -@@ -113,7 +109,7 @@ - - distclean-$(MODNAME): clean-$(MODNAME) - @rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \ -- $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \ -+ $(ROOTPY) $(PYROOTMAP) \ - $(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64) - - distclean:: distclean-$(MODNAME) diff --git a/sci-physics/root/files/root-6.02.05-xrootd4.patch b/sci-physics/root/files/root-6.02.05-xrootd4.patch deleted file mode 100644 index 0b4a4bef0f2e..000000000000 --- a/sci-physics/root/files/root-6.02.05-xrootd4.patch +++ /dev/null @@ -1,11 +0,0 @@ -https://sft.its.cern.ch/jira/browse/ROOT-6998 ---- root-6.02.05/net/netxng/src/TNetXNGFile.cxx.orig 2015-02-09 11:59:47.000000000 +0300 -+++ root-6.02.05/net/netxng/src/TNetXNGFile.cxx 2015-04-05 11:32:31.893127758 +0300 -@@ -28,6 +28,7 @@ - #include <XrdCl/XrdClFile.hh> - #include <XrdCl/XrdClXRootDResponses.hh> - #include <XrdCl/XrdClDefaultEnv.hh> -+#include <XrdVersion.hh> - #include <iostream> - - //------------------------------------------------------------------------------ diff --git a/sci-physics/root/files/root-6.04.06-gsl2.patch b/sci-physics/root/files/root-6.04.06-gsl2.patch deleted file mode 100644 index 5d9fb102b73c..000000000000 --- a/sci-physics/root/files/root-6.04.06-gsl2.patch +++ /dev/null @@ -1,58 +0,0 @@ -commit ee9964210c56e7c1868618a4434c5340fef38fe4 -Author: Pere Mato <pere.mato@cern.ch> -Date: Tue Dec 15 11:58:24 2015 +0100 - - Fix for ROOT-7776 - Integrate GSL 2.0 in ROOT. Changed the version used when option builtin_gsl=ON to 2.1 (latest production). - -diff --git a/cmake/modules/SearchInstalledSoftware.cmake b/cmake/modules/SearchInstalledSoftware.cmake -index 6f04dad..309a8de 100644 ---- a/cmake/modules/SearchInstalledSoftware.cmake -+++ b/cmake/modules/SearchInstalledSoftware.cmake -@@ -332,7 +332,7 @@ if(mathmore OR builtin_gsl) - endif() - endif() - else() -- set(gsl_version 1.15) -+ set(gsl_version 2.1) - message(STATUS "Downloading and building GSL version ${gsl_version}") - ExternalProject_Add( - GSL -diff --git a/math/mathmore/src/GSLMultiFit.h b/math/mathmore/src/GSLMultiFit.h -index 1d86da5..5b5a887 100644 ---- a/math/mathmore/src/GSLMultiFit.h -+++ b/math/mathmore/src/GSLMultiFit.h -@@ -31,6 +31,7 @@ - #include "gsl/gsl_matrix.h" - #include "gsl/gsl_multifit_nlin.h" - #include "gsl/gsl_blas.h" -+#include "gsl/gsl_version.h" - #include "GSLMultiFitFunctionWrapper.h" - - #include "Math/IFunction.h" -@@ -143,7 +144,11 @@ public: - /// gradient value at the minimum - const double * Gradient() const { - if (fSolver == 0) return 0; -+#if GSL_MAJOR_VERSION > 1 -+ fType->gradient(fSolver->state, fVec); -+#else - gsl_multifit_gradient(fSolver->J, fSolver->f,fVec); -+#endif - return fVec->data; - } - -@@ -154,7 +159,14 @@ public: - unsigned int npar = fSolver->fdf->p; - fCov = gsl_matrix_alloc( npar, npar ); - static double kEpsrel = 0.0001; -+#if GSL_MAJOR_VERSION > 1 -+ gsl_matrix* J = gsl_matrix_alloc(npar,npar); -+ gsl_multifit_fdfsolver_jac (fSolver, J); -+ int ret = gsl_multifit_covar(J, kEpsrel, fCov); -+ gsl_matrix_free(J); -+#else - int ret = gsl_multifit_covar(fSolver->J, kEpsrel, fCov); -+#endif - if (ret != GSL_SUCCESS) return 0; - return fCov->data; - } diff --git a/sci-physics/root/files/root-6.04.06-prop-flags.patch b/sci-physics/root/files/root-6.04.06-prop-flags.patch deleted file mode 100644 index 90db15e21f6d..000000000000 --- a/sci-physics/root/files/root-6.04.06-prop-flags.patch +++ /dev/null @@ -1,22 +0,0 @@ - config/Makefile.in | 6 +++--- - 1 file changed, 3 insertions(+), 3 deletions(-) - -diff --git a/config/Makefile.in b/config/Makefile.in -index 9243c90..a23a4d2 100644 ---- a/config/Makefile.in -+++ b/config/Makefile.in -@@ -64,11 +64,11 @@ HOST := @host@ - USECONFIG := @useconfig@ - MKLIBOPTIONS := @mkliboption@ - --EXTRA_CFLAGS := -Iinclude @cflags@ -+EXTRA_CFLAGS := -Iinclude @cflags@ $(CFLAGS) - USERCONF_CFLAGS:= @usercflags@ --EXTRA_CXXFLAGS := -Iinclude @cflags@ -+EXTRA_CXXFLAGS := -Iinclude @cflags@ $(CXXFLAGS) - USERCONF_CXXFLAGS:= @usercxxflags@ --EXTRA_LDFLAGS := @ldflags@ -+EXTRA_LDFLAGS := @ldflags@ $(LDFLAGS) - WERROR := @werror@ - WINRTDEBUG := @winrtdebug@ - CTORSINITARRAY := @ctorsinitarray@ diff --git a/sci-physics/root/files/root-6.12.04-find-oracle-12.patch b/sci-physics/root/files/root-6.12.04-find-oracle-12.patch new file mode 100644 index 000000000000..242e76d09879 --- /dev/null +++ b/sci-physics/root/files/root-6.12.04-find-oracle-12.patch @@ -0,0 +1,34 @@ +From 7aa8aacad80c75b40bb25bdeccc7cacce9a270ca Mon Sep 17 00:00:00 2001 +From: Guilherme Amadio <amadio@cern.ch> +Date: Mon, 18 Dec 2017 13:32:06 +0100 +Subject: [PATCH] Fix FindOracle.cmake to find version 12.x + +--- + cmake/modules/FindOracle.cmake | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + +diff --git a/cmake/modules/FindOracle.cmake b/cmake/modules/FindOracle.cmake +index 24031664a6..b7c8cfbb99 100644 +--- a/cmake/modules/FindOracle.cmake ++++ b/cmake/modules/FindOracle.cmake +@@ -12,7 +12,7 @@ set(ORACLE_FOUND 0) + if(ORACLE_INCLUDE_DIR AND ORACLE_LIBRARY_OCCI) + set(ORACLE_FIND_QUIETLY 1) + endif() +-set(ORACLE_HOME $ENV{ORACLE_DIR}) ++set(ORACLE_HOME $ENV{ORACLE_HOME}) + + IF (ORACLE_PATH_INCLUDES) + SET (ORACLE_INCLUDES_LOCATION ${ORACLE_PATH_INCLUDES}) +@@ -55,7 +55,7 @@ FIND_LIBRARY( + ) + FIND_LIBRARY( + ORACLE_LIBRARY_LNNZ +- NAMES libnnz10 nnz10 libnnz11 nnz11 ociw32 ++ NAMES libnnz10 nnz10 libnnz11 nnz11 libnnz12 nnz12 ociw32 + PATHS ${ORACLE_LIB_LOCATION} + ) + +-- +2.15.1 + diff --git a/sci-physics/root/files/root-6.12.04-no-ocaml.patch b/sci-physics/root/files/root-6.12.04-no-ocaml.patch new file mode 100644 index 000000000000..1d91739f01a0 --- /dev/null +++ b/sci-physics/root/files/root-6.12.04-no-ocaml.patch @@ -0,0 +1,49 @@ +From 7405b8848e7c0d5ddcaa1f27b905b6931dc262e2 Mon Sep 17 00:00:00 2001 +From: Guilherme Amadio <amadio@cern.ch> +Date: Mon, 18 Dec 2017 13:08:14 +0100 +Subject: [PATCH] Disable OCaml bindings in LLVM + +--- + interpreter/llvm/src/cmake/config-ix.cmake | 28 ---------------------------- + 1 file changed, 28 deletions(-) + +diff --git a/interpreter/llvm/src/cmake/config-ix.cmake b/interpreter/llvm/src/cmake/config-ix.cmake +index 6fb589cfd3..d1c9a70d10 100644 +--- a/interpreter/llvm/src/cmake/config-ix.cmake ++++ b/interpreter/llvm/src/cmake/config-ix.cmake +@@ -575,32 +575,4 @@ if(CMAKE_HOST_APPLE AND APPLE) + endif() + endif() + +-# Keep the version requirements in sync with bindings/ocaml/README.txt. +-include(FindOCaml) +-include(AddOCaml) +-if(WIN32) +- message(STATUS "OCaml bindings disabled.") +-else() +- find_package(OCaml) +- if( NOT OCAML_FOUND ) +- message(STATUS "OCaml bindings disabled.") +- else() +- if( OCAML_VERSION VERSION_LESS "4.00.0" ) +- message(STATUS "OCaml bindings disabled, need OCaml >=4.00.0.") +- else() +- find_ocamlfind_package(ctypes VERSION 0.4 OPTIONAL) +- if( HAVE_OCAML_CTYPES ) +- message(STATUS "OCaml bindings enabled.") +- find_ocamlfind_package(oUnit VERSION 2 OPTIONAL) +- set(LLVM_BINDINGS "${LLVM_BINDINGS} ocaml") +- +- set(LLVM_OCAML_INSTALL_PATH "${OCAML_STDLIB_PATH}" CACHE STRING +- "Install directory for LLVM OCaml packages") +- else() +- message(STATUS "OCaml bindings disabled, need ctypes >=0.4.") +- endif() +- endif() +- endif() +-endif() +- + string(REPLACE " " ";" LLVM_BINDINGS_LIST "${LLVM_BINDINGS}") +-- +2.15.1 + diff --git a/sci-physics/root/files/root-6.12.04-z3.patch b/sci-physics/root/files/root-6.12.04-z3.patch new file mode 100644 index 000000000000..04f6edf2c6d5 --- /dev/null +++ b/sci-physics/root/files/root-6.12.04-z3.patch @@ -0,0 +1,39 @@ +From 4445e05660493841b5fb683c7e8a8dc6c08564ac Mon Sep 17 00:00:00 2001 +From: Guilherme Amadio <amadio@cern.ch> +Date: Mon, 18 Dec 2017 11:49:55 +0100 +Subject: [PATCH] Only look for Z3 if necessary + +--- + interpreter/llvm/src/tools/clang/CMakeLists.txt | 9 ++------- + 1 file changed, 2 insertions(+), 7 deletions(-) + +diff --git a/interpreter/llvm/src/tools/clang/CMakeLists.txt b/interpreter/llvm/src/tools/clang/CMakeLists.txt +index 2667b1d689..a1559d9b15 100644 +--- a/interpreter/llvm/src/tools/clang/CMakeLists.txt ++++ b/interpreter/llvm/src/tools/clang/CMakeLists.txt +@@ -186,8 +186,6 @@ if (LIBXML2_FOUND) + set(CLANG_HAVE_LIBXML 1) + endif() + +-find_package(Z3 4.5) +- + include(CheckIncludeFile) + check_include_file(sys/resource.h CLANG_HAVE_RLIMITS) + +@@ -381,11 +379,8 @@ if(NOT CLANG_ENABLE_STATIC_ANALYZER AND (CLANG_ENABLE_ARCMT OR CLANG_ANALYZER_BU + endif() + + if(CLANG_ANALYZER_BUILD_Z3) +- if(Z3_FOUND) +- set(CLANG_ANALYZER_WITH_Z3 1) +- else() +- message(FATAL_ERROR "Cannot find Z3 header file or shared library") +- endif() ++ find_package(Z3 4.5 REQUIRED) ++ set(CLANG_ANALYZER_WITH_Z3 1) + endif() + + if(CLANG_ENABLE_ARCMT) +-- +2.15.1 + diff --git a/sci-physics/root/root-6.12.04.ebuild b/sci-physics/root/root-6.12.04-r1.ebuild index 4fb0c10e18f8..f428493ad11e 100644 --- a/sci-physics/root/root-6.12.04.ebuild +++ b/sci-physics/root/root-6.12.04-r1.ebuild @@ -31,8 +31,6 @@ KEYWORDS="~amd64 ~x86" REQUIRED_USE=" !X? ( !asimage !opengl !qt4 !tiff ) python? ( ${PYTHON_REQUIRED_USE} ) - pythia6? ( !pythia8 ) - pythia8? ( !pythia6 ) tmva? ( math gsl ) davix? ( ssl ) " @@ -130,7 +128,10 @@ src_prepare() { "${FILESDIR}"/${PN}-5.32.00-cfitsio.patch \ "${FILESDIR}"/${PN}-5.32.00-chklib64.patch \ "${FILESDIR}"/${PN}-6.00.01-dotfont.patch \ - "${FILESDIR}"/${PN}-6.11.02-hsimple.patch + "${FILESDIR}"/${PN}-6.11.02-hsimple.patch \ + "${FILESDIR}"/${PN}-6.12.04-no-ocaml.patch \ + "${FILESDIR}"/${PN}-6.12.04-find-oracle-12.patch \ + "${FILESDIR}"/${PN}-6.12.04-z3.patch # make sure we use system libs and headers rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die @@ -254,13 +255,6 @@ src_configure() { ${EXTRA_ECONF} ) - if use oracle ; then - mycmakeargs+=( - -DORACLE_PATH_INCLUDES="${ORACLE_HOME}/include" - -DORACLE_PATH_LIB="${ORACLE_HOME}/$(get_libdir)" - ) - fi - cmake-utils_src_configure } @@ -304,6 +298,7 @@ src_install() { use emacs && elisp-install ${PN} "${BUILD_DIR}"/root-help.el echo "PATH=${EPREFIX}/${MY_PREFIX}/bin" > 99root || die + echo "ROOTPATH=${EPREFIX}/${MY_PREFIX}/bin" > 99root || die echo "LDPATH=${EPREFIX}/${MY_PREFIX}/$(get_libdir)" >> 99root || die if use pythia8; then |