diff options
Diffstat (limited to 'sci-physics')
231 files changed, 14484 insertions, 0 deletions
diff --git a/sci-physics/bullet/Manifest b/sci-physics/bullet/Manifest new file mode 100644 index 000000000000..238de9c4214b --- /dev/null +++ b/sci-physics/bullet/Manifest @@ -0,0 +1,13 @@ +AUX bullet-2.78-soversion.patch 2032 SHA256 f642efb05bee6098b3f1a0a8a4259bdf71f5529e432c9cd1efd81ef5f52be080 SHA512 313e15d119a541c69e977415b393a85bb452414552d11a7ad2b9866d483895543d9920bfbef140ce68b078afc9f3aed2295f45ea7d1537c4bf47f10596787627 WHIRLPOOL d6d647c8905ca81c18990c40c1511d1d64d7c373c0098857448661b7c0fc8e409bbdf20e4e29ca998260891ada05f0c117e3fb89ca1dde565a2c86d660930e97 +AUX bullet-2.85-soversion.patch 1480 SHA256 c4b49e7d9962dca3b66b80c850a4af7686f16d7dc7fe82aa4ba6212bb254c00b SHA512 7679a0e91c06c664c8677f5947d523999eaa496444045c652356f5b49c4f0023488673988a3d8ff84dda4cdbe172d80e95b635773bf74b18b0a1524153f8e6bf WHIRLPOOL 64ac4ee9b7b11fd7844306762ed7aa793c2cb734ba7220db74a41891ddf3e45637008da49565e756c04d9b2c83b358b8e421b6785cc1814827a0a6c60cc2d999 +DIST bullet-2.83.4.tar.gz 17529283 SHA256 2cf287cead9a116c56f6d6f15f73dc8b3ed1fe407ef2ca894027d585fab07341 SHA512 1a10a11671bd152835a45d44a1b3214e29c255338405705f2aaa41adfbdb545ec02f09b94003b836fafcc2b59b836e5b749696a5bb3489ec7050af0d02d9b2e1 WHIRLPOOL 7a472291128888fdd1c96e232b91d734ff10c2b6cf6ff0563bd3e6fa4c113112fe3f169dc0e42fee56aacf66b6717a10901f0c61c618a6c691bf1eb3cbcefbf2 +DIST bullet-2.83.5.tar.gz 17759627 SHA256 df6d58898d3d3bf117854dd64467dbd09625e048624c797649b46bf1c595b152 SHA512 9e1ca7b3afb700bfafc2d39d8ec8b004b5bae7788385e763c15a63a7754c50bfd79e1a6ab501569b613eb5a9c132688c747aa70db0b80099cfe40b6146c32290 WHIRLPOOL 6c304902dd6bc9e800befe5c214adcec48e068e6db288ddf211ce17af74abd8ebc44a34ee1349a17bd22e1f9c316782d7680bb55566b4100b2f788377921be29 +DIST bullet-2.85.tar.gz 24020355 SHA256 0dc3c9488c2b4176f916640ca57860d6689890d0f58c6fceed0f10ddc1fa082f SHA512 f13abb85864202161d1c19596e290735848a7de53ffe09aa8f656d80a523f6382c0f7864a104ee8c437cf88e0f593c4682ecbb87d74adfe1cc868c1a36d3ecea WHIRLPOOL 1c4c576df02633f53d255dad0f690e2e30e26604b95a87c79032ce8059b5705f7685af5cc832151c83d410624d41cc21ab35c38593c662ea0bd78ddb1247946c +DIST bullet-2.86.tar.gz 25806558 SHA256 e6e8b755280ce2c1a8218529eae5dd78e184f7036854229cea611374ad5a671f SHA512 af8a6b282ab606437d7975a59cd8a9c2bf273c83b0e79f0c4c1de6fa51695ba6d5f3c853dce2fdba9cb55e7572214e15089e54db51afc465ca26f502cbd5a4f9 WHIRLPOOL 210b772b1952ef5a8a3d1e95fb18ccd29e0b63b7b3aa5dc44e8130339a28f9d1e12e22cfbcceb3a3782f27ebff22775ea9e9f27093973178f7c2b560267becc2 +EBUILD bullet-2.83.4.ebuild 1423 SHA256 0497d60b8fd1a60636b7848b77c2e6729d0d1755094f13ac77e84b3a6a5e5a41 SHA512 b1678661e9c88a7322bc3fa3d24f9371a40ed2c2002aa5b2ce957366ed5541df372d0bbcb2ae62a3627554da1b938fd9e2ae080074498489cecc861da1e1dbb9 WHIRLPOOL cd936d651176a2876dca0d718db1f22dc41eaf340a5b20582b0e706a23816745d4fd54d826a65e2fdc829fa21acc0e258d1061a66520e470952c0518a4e20d43 +EBUILD bullet-2.83.5.ebuild 1425 SHA256 97dd6c43afe373818d90b9c98b990c849bee0b00a0ff2f07854fc3d19845d768 SHA512 8e453e02afbb923106ca86d486ff4519f773db990dc06babc5ad804d051e14dd2a59e7507a334adc791ed5203e21d50d98ec1d743c9508a3ec0fb1758ddf5101 WHIRLPOOL a5ab7702d6b9a7e6afc017a636df38d8ef3b8eea5d26967a10334b28d384c96bc4e4b650246019c17a1b433ffbf9fe81575352991db3b16856dcd6f50e161445 +EBUILD bullet-2.85.ebuild 1596 SHA256 963eeda693b9cb8766bd546e53c0d8406403bd8cb0b905c3efb91648e29001a1 SHA512 f88b82ed50baea8bba06cd03a469a069b6ce32c3e09c1f048d3a1f02747dfba38f13217bf0dfb92f187321c76901de84ae7958cc713a6cb8be378f811e991d0a WHIRLPOOL 95f249e564915e2963043dee650a2f550a75112b8d9be10d50f39e901dafe9fae780297afafbeadb85d88b38f8b6b10c7b11703c734560197f48e202fa12b17e +EBUILD bullet-2.86.ebuild 1560 SHA256 3dc06502521ceb041179f87097c9b831ddd11422147eaabe5342bdb3ff66de16 SHA512 3bfaf67eb248f8790a2dac686e75718b09ec5773cd23935fff54585ffc6bb70a83e18d2a55baf70cbf5a5085a2a398e755e318039e39f0185e0f790419c617fa WHIRLPOOL f8eb1455e3e9726ed5b64b34756286c53876c1e3b1300af7913dc6d4c25bb45ab92bbaf003eb54c08fd229dcca1ccff9e4d36fee25d3dd2dbcbda90f129e39c9 +MISC ChangeLog 4146 SHA256 70db366ef8b93d7ed03e1d8735b8e2021cfbdc014884ac1ed118f0abb6c544c3 SHA512 6a3012831f7beb9b976c263ff60371674f5ed4eb8747846e02120ee4b6b0e9948c6da87552f7c22025f426b1c3bb164b5d70ebc7242b04db57a91a0a5ce92983 WHIRLPOOL f795cd82f1066ff9b9429d023537cfa0edf407a4f88979914474e7dcf98e970f3f552c51236a25bfe250f60d156812f00467f10fef0ee21bc05356ba220942fe +MISC ChangeLog-2015 5614 SHA256 e1bb953de65fe8713a92a4ff0ac9cecc1d3331ced3edea4a8ed66066ef0172be SHA512 ba254da5a2ae2c719d478e44e8fefd1805a056c3ba04634ab546be02822497b8c6923fa672a0067570db9aeecf2110f3cac8dbc7df018ca88e744123c59d89ae WHIRLPOOL 0c1c97b871e03314d81f73156c789af62915ba4006e2b89bb25ecce044dc04f46d90e908ab0131afd71f9f0f95b6aab777b8f14f27b5110842ac3e0744395545 +MISC metadata.xml 797 SHA256 d48d4c20a681a16cad0853d392efc9d8a9b0645d6491a2f49954beba0d9e543c SHA512 812a02f3145a9a4b7f73f4549b358af86e698efb9fe17c11aafcdb2fa066171d95cf0eb2992150cf0d1a6b919d8ddba22f483623d3dfb5fbd23d42e8ec39f689 WHIRLPOOL 536f866ee04ae0e0c00adbc181d1ccbe10397b3b710b0fb4d7875ff8a76f08c94633e830cb3c57aa37b52e4469b9f63a245071dfffad529da288e6a224f9f6e3 diff --git a/sci-physics/bullet/bullet-2.83.4.ebuild b/sci-physics/bullet/bullet-2.83.4.ebuild new file mode 100644 index 000000000000..0349165b5aad --- /dev/null +++ b/sci-physics/bullet/bullet-2.83.4.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils cmake-utils + +DESCRIPTION="Continuous Collision Detection and Physics Library" +HOMEPAGE="http://www.bulletphysics.com/" +SRC_URI="https://github.com/bulletphysics/bullet3/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="ZLIB" +SLOT="0/${PV}" +KEYWORDS="amd64 ~ppc64 x86 ~amd64-linux ~x86-linux" +IUSE="+bullet3 doc double-precision examples extras" + +RDEPEND=" + virtual/opengl + media-libs/freeglut" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] )" + +PATCHES=( "${FILESDIR}"/${PN}-2.78-soversion.patch ) + +S="${WORKDIR}/${PN}3-${PV}" + +src_prepare() { + # allow to generate docs + sed -i -e 's/GENERATE_HTMLHELP.*//g' Doxyfile || die +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DBUILD_CPU_DEMOS=OFF + -DBUILD_OPENGL3_DEMOS=OFF + -DBUILD_BULLET2_DEMOS=OFF + -DUSE_GRAPHICAL_BENCHMARK=OFF + -DINSTALL_LIBS=ON + -DINSTALL_EXTRA_LIBS=ON + $(cmake-utils_use_build bullet3 BULLET3) + $(cmake-utils_use_build extras EXTRAS) + $(cmake-utils_use_use double-precision DOUBLE_PRECISION) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + doxygen || die + fi +} + +src_install() { + cmake-utils_src_install + use doc && dodoc docs/*.pdf && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins -r Extras examples + fi +} diff --git a/sci-physics/bullet/bullet-2.83.5.ebuild b/sci-physics/bullet/bullet-2.83.5.ebuild new file mode 100644 index 000000000000..dea774e6092c --- /dev/null +++ b/sci-physics/bullet/bullet-2.83.5.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils cmake-utils + +DESCRIPTION="Continuous Collision Detection and Physics Library" +HOMEPAGE="http://www.bulletphysics.com/" +SRC_URI="https://github.com/bulletphysics/bullet3/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="ZLIB" +SLOT="0/${PV}" +KEYWORDS="~amd64 ~ppc64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+bullet3 doc double-precision examples extras" + +RDEPEND=" + virtual/opengl + media-libs/freeglut" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] )" + +PATCHES=( "${FILESDIR}"/${PN}-2.78-soversion.patch ) + +S="${WORKDIR}/${PN}3-${PV}" + +src_prepare() { + # allow to generate docs + sed -i -e 's/GENERATE_HTMLHELP.*//g' Doxyfile || die +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DBUILD_CPU_DEMOS=OFF + -DBUILD_OPENGL3_DEMOS=OFF + -DBUILD_BULLET2_DEMOS=OFF + -DUSE_GRAPHICAL_BENCHMARK=OFF + -DINSTALL_LIBS=ON + -DINSTALL_EXTRA_LIBS=ON + $(cmake-utils_use_build bullet3 BULLET3) + $(cmake-utils_use_build extras EXTRAS) + $(cmake-utils_use_use double-precision DOUBLE_PRECISION) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + doxygen || die + fi +} + +src_install() { + cmake-utils_src_install + use doc && dodoc docs/*.pdf && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins -r Extras examples + fi +} diff --git a/sci-physics/bullet/bullet-2.85.ebuild b/sci-physics/bullet/bullet-2.85.ebuild new file mode 100644 index 000000000000..724386f2a95b --- /dev/null +++ b/sci-physics/bullet/bullet-2.85.ebuild @@ -0,0 +1,73 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils + +DESCRIPTION="Continuous Collision Detection and Physics Library" +HOMEPAGE="http://www.bulletphysics.com/" +SRC_URI="https://github.com/bulletphysics/bullet3/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="ZLIB" +SLOT="0/${PV}" +KEYWORDS="~amd64 ~ppc64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+bullet3 doc double-precision examples extras test" + +RDEPEND=" + virtual/opengl + media-libs/freeglut" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] )" + +PATCHES=( "${FILESDIR}"/${PN}-2.85-soversion.patch ) + +DOCS=( AUTHORS.txt LICENSE.txt README.md ) + +# Building / linking of third Party library BussIK does not work out of the box +RESTRICT="test" + +S="${WORKDIR}/${PN}3-${PV}" + +src_prepare() { + cmake-utils_src_prepare + + # allow to generate docs + sed -i -e 's/GENERATE_HTMLHELP.*//g' Doxyfile || die +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DBUILD_CPU_DEMOS=OFF + -DBUILD_OPENGL3_DEMOS=OFF + -DBUILD_BULLET2_DEMOS=OFF + -DUSE_GRAPHICAL_BENCHMARK=OFF + -DINSTALL_LIBS=ON + -DINSTALL_EXTRA_LIBS=ON + -DBUILD_BULLET3=$(usex bullet3) + -DBUILD_EXTRAS=$(usex extras) + -DUSE_DOUBLE_PRECISION=$(usex double-precision) + -DBUILD_UNIT_TESTS=$(usex test) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + + if use doc; then + doxygen || die + HTML_DOCS+=( html/. ) + DOCS+=( docs/*.pdf ) + fi +} + +src_install() { + cmake-utils_src_install + + if use examples; then + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples + fi +} diff --git a/sci-physics/bullet/bullet-2.86.ebuild b/sci-physics/bullet/bullet-2.86.ebuild new file mode 100644 index 000000000000..3a22c4b3a915 --- /dev/null +++ b/sci-physics/bullet/bullet-2.86.ebuild @@ -0,0 +1,72 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils + +DESCRIPTION="Continuous Collision Detection and Physics Library" +HOMEPAGE="http://www.bulletphysics.com/" +SRC_URI="https://github.com/bulletphysics/bullet3/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="ZLIB" +SLOT="0/${PV}" +KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+bullet3 doc double-precision examples extras test" + +RDEPEND=" + virtual/opengl + media-libs/freeglut" + +DEPEND=" + ${RDEPEND} + doc? ( app-doc/doxygen[dot] )" + +PATCHES=( "${FILESDIR}"/${PN}-2.85-soversion.patch ) + +DOCS=( AUTHORS.txt LICENSE.txt README.md ) + +# Building / linking of third Party library BussIK does not work out of the box +RESTRICT="test" + +S="${WORKDIR}/${PN}3-${PV}" + +src_prepare() { + cmake-utils_src_prepare + + # allow to generate docs + sed -i -e 's/GENERATE_HTMLHELP.*//g' Doxyfile || die +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DBUILD_CPU_DEMOS=OFF + -DBUILD_OPENGL3_DEMOS=OFF + -DBUILD_BULLET2_DEMOS=OFF + -DUSE_GRAPHICAL_BENCHMARK=OFF + -DINSTALL_LIBS=ON + -DINSTALL_EXTRA_LIBS=ON + -DBUILD_BULLET3=$(usex bullet3) + -DBUILD_EXTRAS=$(usex extras) + -DUSE_DOUBLE_PRECISION=$(usex double-precision) + -DBUILD_UNIT_TESTS=$(usex test) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + + if use doc; then + doxygen || die + HTML_DOCS+=( html/. ) + DOCS+=( docs/*.pdf ) + fi +} + +src_install() { + cmake-utils_src_install + use examples && DOCS+=( examples ) + einstalldocs +} diff --git a/sci-physics/bullet/files/bullet-2.78-soversion.patch b/sci-physics/bullet/files/bullet-2.78-soversion.patch new file mode 100644 index 000000000000..b54ffa777ee3 --- /dev/null +++ b/sci-physics/bullet/files/bullet-2.78-soversion.patch @@ -0,0 +1,44 @@ + Extras/Serialize/BulletFileLoader/CMakeLists.txt | 2 ++ + .../Serialize/BulletWorldImporter/CMakeLists.txt | 2 ++ + Extras/glui/CMakeLists.txt | 2 ++ + 3 files changed, 6 insertions(+), 0 deletions(-) + +diff --git a/Extras/Serialize/BulletFileLoader/CMakeLists.txt b/Extras/Serialize/BulletFileLoader/CMakeLists.txt +index 486cfdc..f1e0884 100644 +--- a/Extras/Serialize/BulletFileLoader/CMakeLists.txt ++++ b/Extras/Serialize/BulletFileLoader/CMakeLists.txt +@@ -16,6 +16,8 @@ btBulletFile.cpp + btBulletFile.h + ) + ++SET_TARGET_PROPERTIES(BulletFileLoader PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(BulletFileLoader PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(BulletFileLoader LinearMath) + ENDIF (BUILD_SHARED_LIBS) +diff --git a/Extras/Serialize/BulletWorldImporter/CMakeLists.txt b/Extras/Serialize/BulletWorldImporter/CMakeLists.txt +index e620315..e04e8e9 100644 +--- a/Extras/Serialize/BulletWorldImporter/CMakeLists.txt ++++ b/Extras/Serialize/BulletWorldImporter/CMakeLists.txt +@@ -9,6 +9,8 @@ btBulletWorldImporter.cpp + btBulletWorldImporter.h + ) + ++SET_TARGET_PROPERTIES(BulletWorldImporter PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(BulletWorldImporter PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(BulletWorldImporter BulletDynamics BulletCollision BulletFileLoader LinearMath) + ENDIF (BUILD_SHARED_LIBS) +diff --git a/Extras/glui/CMakeLists.txt b/Extras/glui/CMakeLists.txt +index c2018a7..9a8d90f 100644 +--- a/Extras/glui/CMakeLists.txt ++++ b/Extras/glui/CMakeLists.txt +@@ -61,6 +61,8 @@ arcball.cpp glui_button.cpp glui_filebrowser.cpp glui_node.cpp glui_separ + + ) + ++SET_TARGET_PROPERTIES(GLUI PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(GLUI PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(GLUI ${GLUT_glut_LIBRARY} ${OPENGL_gl_LIBRARY} ${OPENGL_glu_LIBRARY}) + ENDIF (BUILD_SHARED_LIBS) diff --git a/sci-physics/bullet/files/bullet-2.85-soversion.patch b/sci-physics/bullet/files/bullet-2.85-soversion.patch new file mode 100644 index 000000000000..74cfe4e8f8aa --- /dev/null +++ b/sci-physics/bullet/files/bullet-2.85-soversion.patch @@ -0,0 +1,31 @@ + Extras/Serialize/BulletFileLoader/CMakeLists.txt | 2 ++ + .../Serialize/BulletWorldImporter/CMakeLists.txt | 2 ++ + Extras/glui/CMakeLists.txt | 2 ++ + 3 files changed, 6 insertions(+), 0 deletions(-) + +diff --git a/Extras/Serialize/BulletFileLoader/CMakeLists.txt b/Extras/Serialize/BulletFileLoader/CMakeLists.txt +index 486cfdc..f1e0884 100644 +--- a/Extras/Serialize/BulletFileLoader/CMakeLists.txt ++++ b/Extras/Serialize/BulletFileLoader/CMakeLists.txt +@@ -16,6 +16,8 @@ btBulletFile.cpp + btBulletFile.h + ) + ++SET_TARGET_PROPERTIES(BulletFileLoader PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(BulletFileLoader PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(BulletFileLoader LinearMath) + ENDIF (BUILD_SHARED_LIBS) +diff --git a/Extras/Serialize/BulletWorldImporter/CMakeLists.txt b/Extras/Serialize/BulletWorldImporter/CMakeLists.txt +index e620315..e04e8e9 100644 +--- a/Extras/Serialize/BulletWorldImporter/CMakeLists.txt ++++ b/Extras/Serialize/BulletWorldImporter/CMakeLists.txt +@@ -9,6 +9,8 @@ btBulletWorldImporter.cpp + btBulletWorldImporter.h + ) + ++SET_TARGET_PROPERTIES(BulletWorldImporter PROPERTIES VERSION ${BULLET_VERSION}) ++SET_TARGET_PROPERTIES(BulletWorldImporter PROPERTIES SOVERSION ${BULLET_VERSION}) + IF (BUILD_SHARED_LIBS) + TARGET_LINK_LIBRARIES(BulletWorldImporter BulletDynamics BulletCollision BulletFileLoader LinearMath) + ENDIF (BUILD_SHARED_LIBS) diff --git a/sci-physics/bullet/metadata.xml b/sci-physics/bullet/metadata.xml new file mode 100644 index 000000000000..884f06af0bae --- /dev/null +++ b/sci-physics/bullet/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + Bullet is a professional open source multi-threaded + 3D Collision Detection and Rigid Body Dynamics Library + for games and animation. +</longdescription> + <use> + <flag name="bullet3">Build Bullet 3</flag> + <flag name="double-precision">Build libraries in double precision</flag> + <flag name="extras">Build additional libraries</flag> + </use> + <upstream> + <remote-id type="google-code">bullet</remote-id> + <remote-id type="github">bulletphysics/bullet3</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/cernlib-montecarlo/Manifest b/sci-physics/cernlib-montecarlo/Manifest new file mode 100644 index 000000000000..a9b2e7c0ebc6 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/Manifest @@ -0,0 +1,9 @@ +AUX cernlib-montecarlo-2006-noherwig.patch 1993 SHA256 bb85c46eb9d2acaf95dad615aac3b3c08b2607aea3368f7bbadd2532d58e177d SHA512 e53794aeefdda4667bc71826b9514f44dd23fb0076cb55284ff4af0277facf5d3e1664f76dff80f975157350a02b871437230c66b49816c75730b4afed9d5ec9 WHIRLPOOL 088f7786549f24b1fcb47bdd1fd4ee98a973d7ef0a5add7f327ad84def85ddd0be38467e478aa5028e324fff26d3a50e0f7f6bb63074192a28b26d55440bd715 +DIST mclibs_20061220+dfsg3-1.debian.tar.gz 46362 SHA256 17a9f61860237b963bc4b6240296add2bbe45cf16ce994061c3f20c33994cf73 SHA512 ddb31fd218f0f051155548011415d9526e7866ec7caf7041a5f572d8064cb4f19c188724e839f445a47f490dacf0d67ef9ba871725756892e0ba1d569d575fe3 WHIRLPOOL c8db51ed7e1e78ffcdca96af3aeb388391473acc796b35af838fa60cb3129816e787dce325c8ac8be411d98ec2d1392959df97dd560ccae172c230ce2c342676 +DIST mclibs_20061220+dfsg3-3.debian.tar.gz 44763 SHA256 9796094d6b27a07a342c8f7572cae40b8717e13d04c8b1acb4b337901cb0c5af SHA512 2ef3c54026e86182200d4d7fce1889a2dd8c252743d0819e74679e2a5067794bea574530b59a7f08c394f8b75f7d31cac31f638fb72045700b379bd686a8f92f WHIRLPOOL 515ba362e11897c02cbbcecd25340ca7aba87c608b537103b38afe2fb65f0d1f7fcdd025d2fe4d835f488580608f53c1c606751996fe0e7fb55fb828c2d35997 +DIST mclibs_20061220+dfsg3.orig.tar.gz 7642494 SHA256 cb5ea19bc54a06c031c90192685748ce0f7df016bfae6b9d7d672d77a3444ce5 SHA512 add98b585648994ab616d040e9a3410b0eba13ab54a812674d3940bae0effed4446b02ce6a34887841c114bc444b1b83598e2c89c22b4df8dcd3fd4c1d8aaba3 WHIRLPOOL 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3610793f227947f5fb83e89ae052ede4d7aec7cadd00d1a771e0c95703b69336 SHA512 459121093ad8b0bea7955cb589e6b58181dc57494ed16d4c6d95a755d044de421712c52c21b1b5f966833f4d93bbcadcbdf391be04d234e780cabb974eb38deb WHIRLPOOL 4b11bf47bcd53d1efcd7905874c0ea82dd7b9cdd84ac1f90edf48b1e7330ac8cc293566f09acb66228672cb3ec777b3a45de1f3fe425f45ed0c351d2a16c8c1e +MISC ChangeLog-2015 4539 SHA256 cfe56d28d5b93bf69478816a7dc405354a8b9ec33d9c6d823cc550dffc692987 SHA512 61a25a81ab90dd9ccb00d8a11112da46cbfb8899439d022fe15b51ac65728b8feee161ca36fef0fff3feb4f81578271ca4f4bde680aac1c4752264cff763d6dd WHIRLPOOL dbd00b3fe3710125a1c6b979cf636364b4bb032e64fa696f5b7d4e9049969c88ef9a9dccb539e792e61e2b17632484db54c121bbd07bda0ccce48a2d3b1e6666 +MISC metadata.xml 772 SHA256 b50a703e16c0b89e6d3549fc95b3d5f7eb0e8ae73cbf1444484ebbb899f3dc05 SHA512 652f5e009b03b95f15b0ee34d6847c99435a9ad7420eb0cfb5fbf51e052a3a21d7655a8e817fd2c685154e68c946f433302670d49eabb7779a73963a99ed145a WHIRLPOOL e78ce584535925b1e225cf025302febcbe4a82b7918d623a323641f9816ec891124f0da91cfde30d354c9c614ed8e572e4e99751888bb6aa95933e31969947ee diff --git a/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r3.ebuild b/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r3.ebuild new file mode 100644 index 000000000000..95abf6114f41 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r3.ebuild @@ -0,0 +1,88 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils fortran-2 toolchain-funcs + +DEB_PN=mclibs +DEB_PV=20061220+dfsg3 +DEB_PR=1 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="Monte-carlo library and tools for the cernlib" +HOMEPAGE="https://cernlib.web.cern.ch/cernlib/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +IUSE="+herwig" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" + +RDEPEND=" + x11-libs/motif:0 + dev-lang/cfortran + sci-physics/cernlib + herwig? ( !sci-physics/herwig )" + +DEPEND="${RDEPEND} + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . || die + cp debian/add-ons/Makefile . || die + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + Makefile || die + + einfo "Applying Debian patches" + emake -j1 patch + use herwig || epatch "${FILESDIR}"/${P}-noherwig.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + # respect users flags + sed -i \ + -e 's/-O3/-O2/g' \ + -e "s/-O2/${CFLAGS}/g" \ + -e "s|\(CcCmd[[:space:]]*\)gcc|\1$(tc-getCC)|g" \ + -e "s|\(CplusplusCmd[[:space:]]*\)g++|\1$(tc-getCXX)|g" \ + -e "s|\(FortranCmd[[:space:]]*\)gfortran|\1$(tc-getFC)|g" \ + src/config/linux.cf \ + || die "sed linux.cf failed" + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" + + sed -i \ + -e 's/\$(FCLINK)/\$(FCLINK) $(LDFLAGS)/' \ + -e 's/\$(CCLINK)/\$(CCLINK) $(LDFLAGS)/' \ + src/config/{biglib,fortran,Imake}.rules \ + || die "sed for ldflags propagation failed" +} + +src_compile() { + export VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_test() { + LD_LIBRARY_PATH="${S}"/shlib \ + emake -j1 cernlib-test +} + +src_install() { + export VARTEXFONTS="${T}"/fonts + emake DESTDIR="${D}" MCDOC="${ED}usr/share/doc/${PF}" install + cd debian + dodoc changelog README.* deadpool.txt copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r4.ebuild b/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r4.ebuild new file mode 100644 index 000000000000..4bc56cab02e3 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/cernlib-montecarlo-2006-r4.ebuild @@ -0,0 +1,88 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils fortran-2 toolchain-funcs + +DEB_PN=mclibs +DEB_PV=20061220+dfsg3 +DEB_PR=3 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="Monte-carlo library and tools for the cernlib" +HOMEPAGE="https://cernlib.web.cern.ch/cernlib/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +IUSE="+herwig" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +RDEPEND=" + x11-libs/motif:0 + dev-lang/cfortran + sci-physics/cernlib + herwig? ( !sci-physics/herwig )" + +DEPEND="${RDEPEND} + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . || die + cp debian/add-ons/Makefile . || die + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + Makefile || die + + einfo "Applying Debian patches" + emake -j1 patch + use herwig || epatch "${FILESDIR}"/${P}-noherwig.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + # respect users flags + sed -i \ + -e 's/-O3/-O2/g' \ + -e "s/-O2/${CFLAGS}/g" \ + -e "s|\(CcCmd[[:space:]]*\)gcc|\1$(tc-getCC)|g" \ + -e "s|\(CplusplusCmd[[:space:]]*\)g++|\1$(tc-getCXX)|g" \ + -e "s|\(FortranCmd[[:space:]]*\)gfortran|\1$(tc-getFC)|g" \ + src/config/linux.cf \ + || die "sed linux.cf failed" + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" + + sed -i \ + -e 's/\$(FCLINK)/\$(FCLINK) $(LDFLAGS)/' \ + -e 's/\$(CCLINK)/\$(CCLINK) $(LDFLAGS)/' \ + src/config/{biglib,fortran,Imake}.rules \ + || die "sed for ldflags propagation failed" +} + +src_compile() { + export VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_test() { + export VARTEXFONTS="${T}"/fonts + LD_LIBRARY_PATH="${S}"/shlib \ + emake -j1 cernlib-test +} + +src_install() { + emake DESTDIR="${D}" MCDOC="${ED}usr/share/doc/${PF}" install + cd debian + dodoc changelog README.* deadpool.txt copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/cernlib-montecarlo/files/cernlib-montecarlo-2006-noherwig.patch b/sci-physics/cernlib-montecarlo/files/cernlib-montecarlo-2006-noherwig.patch new file mode 100644 index 000000000000..d0cb42d1ba42 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/files/cernlib-montecarlo-2006-noherwig.patch @@ -0,0 +1,52 @@ +diff --git a/mclibs-2006.dfsg.2.orig/Makefile b/mclibs-2006.dfsg.2.orig/Makefile +index f3c89fd..780499e 100644 +--- a/mclibs-2006.dfsg.2.orig/Makefile ++++ b/mclibs-2006.dfsg.2.orig/Makefile +@@ -89,9 +89,6 @@ install-includes: + done ; \ + done + +- # install some symlinks, e.g. herwig$$version -> herwig +- rm -f $(DESTDIR)$(includedir)/herwig && \ +- ln -sf herwig59 $(DESTDIR)$(includedir)/herwig + rm -rf $(DESTDIR)$(includedir)/isajet758 + mv $(DESTDIR)$(includedir)/isajet $(DESTDIR)$(includedir)/isajet758 + ln -sf isajet758 $(DESTDIR)$(includedir)/isajet +@@ -128,14 +125,12 @@ install-arch: install-includes + fi + + # ... and mclibs documentation +- for dir in cojets eurodec herwig isajet pdflib ; do \ ++ for dir in cojets eurodec isajet pdflib ; do \ + install -d -m 0755 $(MCDOC)/$$dir ; \ + done + install -p -m 0644 $(CERN_DOCDIR)/cojets.txt $(MCDOC)/cojets/ + install -p -m 0644 $(CERN_DOCDIR)/isa* $(MCDOC)/isajet/ + install -p -m 0644 $(CERN_DOCDIR)/eurodec.txt $(MCDOC)/eurodec/ +- install -p -m 0644 $(CVSCOSRC)/mclibs/herwig/doc/herwig59 \ +- $(MCDOC)/herwig/herwig59.txt + install -p -m 0644 $(CVSCOSRC)/mclibs/pdf/dpdf/pdfdoc.doc \ + $(MCDOC)/pdflib/pdfdoc.txt + +diff --git a/mclibs-2006.dfsg.2.orig/src/mclibs/Imakefile b/mclibs-2006.dfsg.2.orig/src/mclibs/Imakefile +index 0c9867d..0f04f1b 100644 +--- a/mclibs-2006.dfsg.2.orig/src/mclibs/Imakefile ++++ b/mclibs-2006.dfsg.2.orig/src/mclibs/Imakefile +@@ -6,7 +6,7 @@ + to them and their dependents. They have already been purged from + Debianized source code. Also, re-order libs so that dependent ones + come after dependees. */ +-LIBDIRS= cojets eurodec pdf photos herwig isajet ++LIBDIRS= cojets eurodec pdf photos isajet + + SUBDIRS = $(LIBDIRS) + +@@ -16,7 +16,7 @@ InstallLibSubdirs($(LIBDIRS)) + InstallSharedLibSubdirs($(LIBDIRS)) + + /* Again, purge Pythia, Jetset and dependents. */ +-INCLUDEDIRS= cojets eurodec herwig isajet pdf ++INCLUDEDIRS= cojets eurodec isajet pdf + + InstallIncludeSubdirs($(INCLUDEDIRS)) + diff --git a/sci-physics/cernlib-montecarlo/metadata.xml b/sci-physics/cernlib-montecarlo/metadata.xml new file mode 100644 index 000000000000..8c84153e4f42 --- /dev/null +++ b/sci-physics/cernlib-montecarlo/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + This metapackage provides various Monte Carlo libraries included in + Cernlib (both shared and static). Likely only physicists will be + interested in these packages. + The libraries of Ariadne, Fritiof, Jetset, Lepto, and Pythia are not + available for Gentoo: see cernlib Debian packaging for explanation. +</longdescription> + <use> + <flag name="herwig">Build Herwig internal event generator, newer version + available in <pkg>sci-physics/herwig</pkg></flag> + </use> +</pkgmetadata> diff --git a/sci-physics/cernlib/Manifest b/sci-physics/cernlib/Manifest new file mode 100644 index 000000000000..cca26d85ee77 --- /dev/null +++ b/sci-physics/cernlib/Manifest @@ -0,0 +1,11 @@ +AUX cernlib-2006-fgets.patch 759 SHA256 eb1e965627b094a698af5f9629f5f69cb4b966f33c01b48a7bcf75b80c3e9eaf SHA512 efd017d9164e94870364e7124ae7ffd001989ffafe44ee85c5161bcc6399de4559430fdb39daf25e4fdb788a74ada06f00b9023651e714ca0c5ccf1ca248e821 WHIRLPOOL 17e8dfd1e788c7fae1276f08af3bcb6d5b50c7d0bc3885498317a702e27502d0cf697346ce25afe9cc964c96912878e44c20f8cf6b299c147f978bade2825547 +AUX cernlib-2006-nogfortran.patch 1994 SHA256 f9839ef5dc005715387bd997f69565aa1e5984502e6c6e625659e35bbaf9d997 SHA512 9446e85f57c5cdc78468e738f2a5d7227a2a91d4d6591b063fbc0a976bdb1b1f34edceee92ed7fbac558b1f6ba2663d1b43c373e92da3f414df21c601a0f1f72 WHIRLPOOL cab7f7b2ba7e71b539306b198649368324c75bbeb3e514ad7562ce6ec421f5c57a5b6502b99e78b5b35e954b64abb44b3a423212c14dda88bcddba8fa04ca498 +AUX cernlib-2006-ypatchy-short-name.patch 331 SHA256 c71212efa6e33ec4dd55d4080bd22db86438fbda1091186d146699496f1cd101 SHA512 dd97e328706c243b84c6464ee1db3c546280dba838766e6aefd8a5349e57a3b430c38d81909f5ad445af7c3a602e0a6e64110b7f8eb6e44a907a7311828142e9 WHIRLPOOL bd2b7c886ecf3937e0c189b04b3f13c4b9fe131b2cac8e150b4bfda0218eebd984ba9978ca3b704d59b5098718f9ff5424b1163ad7ade078164224a7642d2548 +DIST cernlib_20061220+dfsg3-2.debian.tar.gz 257093 SHA256 54d01b7c16015586b09d54940f8e4389eb9f9a85e93be8058a2f1349a009029a SHA512 43a2ca55d42b92bfb551b029c75728e80b4c83473397b52f746d9481c7503762bc5a281732908bfeb29a64f728fed4c127ed1cb9101c16e4fb2dd28c452730ea 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000000000000..8a03a5909c64 --- /dev/null +++ b/sci-physics/cernlib/cernlib-2006-r5.ebuild @@ -0,0 +1,107 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils fortran-2 multilib toolchain-funcs + +DEB_PN=cernlib +DEB_PV=20061220+dfsg3 +DEB_PR=2 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN program library for High Energy Physics" +HOMEPAGE="https://cernlib.web.cern.ch/cernlib/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="amd64 hppa sparc x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + x11-libs/motif:0 + virtual/lapack + dev-lang/cfortran" +DEPEND="${RDEPEND} + x11-misc/imake + x11-misc/makedepend + virtual/pkgconfig" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}" + +src_prepare() { + mv ../debian . || die + epatch "${FILESDIR}"/${P}-nogfortran.patch + # set some default paths + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + -e "s:prefix)/lib:prefix)/$(get_libdir):" \ + -e "s:\$(prefix)/etc:${EROOT}/etc:" \ + -e 's:$(prefix)/man:$(prefix)/share/man:' \ + debian/add-ons/cernlib.mk || die "sed failed" + + # use system blas and lapack set by gentoo framework + sed -i \ + -e "s:\$DEPS -lm:$($(tc-getPKG_CONFIG) --libs blas):" \ + -e "s:\$DEPS -llapack -lm:$($(tc-getPKG_CONFIG) --libs lapack):" \ + -e 's:`depend $d $a blas`::' \ + -e 's:X11R6:X11:g' \ + debian/add-ons/bin/cernlib.in || die "sed failed" + + cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + + einfo "Applying Debian patches" + emake -j1 patch + + epatch "${FILESDIR}"/${P}-fgets.patch + epatch "${FILESDIR}"/${P}-ypatchy-short-name.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + + # respect users flags + sed -i \ + -e 's/-O3/-O2/g' \ + -e "s/-O2/${CFLAGS}/g" \ + -e "s|\(CcCmd[[:space:]]*\)gcc|\1$(tc-getCC)|g" \ + -e "s|\(CplusplusCmd[[:space:]]*\)g++|\1$(tc-getCXX)|g" \ + -e "s|\(FortranCmd[[:space:]]*\)gfortran|\1$(tc-getFC)|g" \ + src/config/linux.cf \ + || die "sed linux.cf failed" + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" + + sed -i \ + -e 's/\$(FCLINK)/\$(FCLINK) $(LDFLAGS)/' \ + -e 's/\$(CCLINK)/\$(CCLINK) $(LDFLAGS)/' \ + src/config/{biglib,fortran,Imake}.rules \ + src/patchy/Imakefile \ + || die "sed for ldflags propagation failed" + + # add missing headers for implicit + sed -i \ + -e '0,/^#include/i#include <stdlib.h>' \ + src/kernlib/kerngen/ccgen*/*.c || die +} + +src_compile() { + # parallel make breaks and complex patched imake system, hard to debug + emake -j1 cernlib-indep cernlib-arch +} + +src_test() { + LD_LIBRARY_PATH="${S}"/shlib emake -j1 cernlib-test +} + +src_install() { + default + cd debian + dodoc changelog README.* deadpool.txt NEWS copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/cernlib/cernlib-2006-r6.ebuild b/sci-physics/cernlib/cernlib-2006-r6.ebuild new file mode 100644 index 000000000000..abdee8792276 --- /dev/null +++ b/sci-physics/cernlib/cernlib-2006-r6.ebuild @@ -0,0 +1,107 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils fortran-2 multilib toolchain-funcs + +DEB_PN=cernlib +DEB_PV=20061220+dfsg3 +DEB_PR=4.1 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN program library for High Energy Physics" +HOMEPAGE="https://cernlib.web.cern.ch/cernlib/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.xz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="~amd64 ~hppa ~sparc ~x86 ~amd64-linux ~x86-linux" + +RDEPEND=" + x11-libs/motif:0 + virtual/lapack + dev-lang/cfortran" +DEPEND="${RDEPEND} + x11-misc/imake + x11-misc/makedepend + virtual/pkgconfig" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}" + +src_prepare() { + mv ../debian . || die + epatch "${FILESDIR}"/${P}-nogfortran.patch + # set some default paths + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + -e "s:prefix)/lib/\$(DEB_HOST_MULTIARCH):prefix)/$(get_libdir):" \ + -e "s:\$(prefix)/etc:${EROOT}/etc:" \ + -e 's:$(prefix)/man:$(prefix)/share/man:' \ + debian/add-ons/cernlib.mk || die "sed failed" + + # use system blas and lapack set by gentoo framework + sed -i \ + -e "s:\$DEPS -lm:$($(tc-getPKG_CONFIG) --libs blas):" \ + -e "s:\$DEPS -llapack -lm:$($(tc-getPKG_CONFIG) --libs lapack):" \ + -e 's:`depend $d $a blas`::' \ + -e 's:X11R6:X11:g' \ + -e 's: /[^ ]*`dpkg-arch.*`::' \ + debian/add-ons/bin/cernlib.in || die "sed failed" + + cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + + einfo "Applying Debian patches" + emake -j1 patch + + epatch "${FILESDIR}"/${P}-fgets.patch + epatch "${FILESDIR}"/${P}-ypatchy-short-name.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + + # respect users flags + sed -i \ + -e 's/-O3/-O2/g' \ + -e "s/-O2/${CFLAGS}/g" \ + -e "s|\(CcCmd[[:space:]]*\)gcc|\1$(tc-getCC)|g" \ + -e "s|\(CplusplusCmd[[:space:]]*\)g++|\1$(tc-getCXX)|g" \ + -e "s|\(FortranCmd[[:space:]]*\)gfortran|\1$(tc-getFC)|g" \ + src/config/linux.cf \ + || die "sed linux.cf failed" + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" + + sed -i \ + -e 's/\$(FCLINK)/\$(FCLINK) $(LDFLAGS)/' \ + -e 's/\$(CCLINK)/\$(CCLINK) $(LDFLAGS)/' \ + src/config/{biglib,fortran,Imake}.rules \ + src/patchy/Imakefile \ + || die "sed for ldflags propagation failed" + + # add missing headers for implicit + sed -i \ + -e '0,/^#include/i#include <stdlib.h>' \ + src/kernlib/kerngen/ccgen*/*.c || die +} + +src_compile() { + # parallel make breaks and complex patched imake system, hard to debug + emake -j1 cernlib-indep cernlib-arch +} + +src_test() { + LD_LIBRARY_PATH="${S}"/shlib emake -j1 cernlib-test +} + +src_install() { + default + cd debian + dodoc changelog README.* deadpool.txt NEWS copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/cernlib/files/cernlib-2006-fgets.patch b/sci-physics/cernlib/files/cernlib-2006-fgets.patch new file mode 100644 index 000000000000..e42eaf833b35 --- /dev/null +++ b/sci-physics/cernlib/files/cernlib-2006-fgets.patch @@ -0,0 +1,20 @@ +--- src/packlib/cspack/tcpaw/tcpaw.c.old 2011-01-30 21:18:35.326089059 +0000 ++++ src/packlib/cspack/tcpaw/tcpaw.c 2011-01-30 21:18:01.876081979 +0000 +@@ -984,7 +984,7 @@ + int s, addrlen; + int sx, nn = 0; /* REXEC */ + #ifndef IBM +- char get[50], *getp = get; /* REXEC */ ++ char get[80], *getp = get; /* REXEC */ + #endif /*^IBM */ + char sys[30]; + register int i, j, k; +@@ -1036,7 +1036,7 @@ + char buff[100]; + char *get; + char *getp; +- char getbuf[50]; /* REXEC */ ++ char getbuf[80]; /* REXEC */ + getp = getbuf; /* REXEC */ + get = getbuf; /* REXEC */ + /* j = 80; */ /* (crude kludge) length of srvc in Fortran */ diff --git a/sci-physics/cernlib/files/cernlib-2006-nogfortran.patch b/sci-physics/cernlib/files/cernlib-2006-nogfortran.patch new file mode 100644 index 000000000000..63883274403f --- /dev/null +++ b/sci-physics/cernlib/files/cernlib-2006-nogfortran.patch @@ -0,0 +1,56 @@ +--- debian/add-ons/Makefile.orig 2008-03-15 16:46:46.000000000 +0000 ++++ debian/add-ons/Makefile 2008-03-15 16:47:51.000000000 +0000 +@@ -28,6 +28,9 @@ + ifneq (,$(findstring ifort,$(DEB_BUILD_OPTIONS))) + sed -i -e 's/-lgfortran/-limf/' $(CERN_BINDIR)/cernlib + endif ++ifneq (,$(findstring g77,$(DEB_BUILD_OPTIONS))) ++ sed -i -e 's/-lgfortran/-lg2c/' $(CERN_BINDIR)/cernlib ++endif + chmod a+x $(CERN_BINDIR)/cernlib + + # target to install include files for development packages +--- debian/add-ons/cernlib.mk.orig 2008-03-15 16:48:05.000000000 +0000 ++++ debian/add-ons/cernlib.mk 2008-03-15 17:09:14.000000000 +0000 +@@ -35,6 +35,10 @@ + export TOOL_SONAME = _gfortran + export TOOL_NAME = _gfortran + endif ++ifeq (,$(findstring g77,$(DEB_BUILD_OPTIONS))) ++ export TOOL_SONAME = _gfortran ++ export TOOL_NAME = _gfortran ++endif + export PATH := $(CERN_BINDIR):$(ADDONDIR)/bin:$(datadir)/cernlib:${PATH} + export INSTALL_OPTS ?= -s + export CC ?= gcc +@@ -118,6 +122,8 @@ + endif + ifneq (,$(findstring ifort,$(DEB_BUILD_OPTIONS))) + echo '#define HasIntelifc YES' >> $(CVSCOSRC)/config/host.def ++else ifneq (,$(findstring g77,$(DEB_BUILD_OPTIONS))) ++ echo >> $(CVSCOSRC)/config/host.def + else + echo '#define Hasgfortran YES' >> $(CVSCOSRC)/config/host.def + endif +--- debian/patches/320-support-ifort.dpatch.orig 2008-03-15 17:31:34.000000000 +0000 ++++ debian/patches/320-support-ifort.dpatch 2008-03-15 17:31:56.000000000 +0000 +@@ -27,7 +27,7 @@ + #if defined(CERNLIB_UNIX) + CLIBS= -G Motif kernlib + +# if defined(CERNLIB_INTELIFC) +-+CLIBS= $(CLIBS) -nofor_main +++CLIBS:= $(CLIBS) -nofor_main + +# endif + #endif + +--- debian/patches/803-link-binaries-dynamically.dpatch.orig 2008-03-15 17:48:38.000000000 +0000 ++++ debian/patches/803-link-binaries-dynamically.dpatch 2008-03-15 17:49:17.000000000 +0000 +@@ -64,7 +64,7 @@ + -CLIBS= -G Motif kernlib + +CLIBS= -G Motif -u Xm + # if defined(CERNLIB_INTELIFC) +- CLIBS= $(CLIBS) -nofor_main ++ CLIBS:= $(CLIBS) -nofor_main + # endif + #endif + diff --git a/sci-physics/cernlib/files/cernlib-2006-ypatchy-short-name.patch b/sci-physics/cernlib/files/cernlib-2006-ypatchy-short-name.patch new file mode 100644 index 000000000000..706ab3671672 --- /dev/null +++ b/sci-physics/cernlib/files/cernlib-2006-ypatchy-short-name.patch @@ -0,0 +1,11 @@ +--- src/patchy/Imakefile.orig 2013-01-16 13:45:07.161828513 -0800 ++++ src/patchy/Imakefile 2013-01-16 13:45:34.768966597 -0800 +@@ -77,7 +77,7 @@ + @ ln -s $< $@ + + %.f: $(LDIR)%.cra $(LDIR)patchy.car +- ypatchy - :$@ :$< TTY .go ++ ypatchy - :$@ :$(shell basename $<) TTY .go + + .f.o: + $(FC) -c $(FORTRANOPTIONS) $(FDEBUGFLAGS) $< diff --git a/sci-physics/cernlib/metadata.xml b/sci-physics/cernlib/metadata.xml new file mode 100644 index 000000000000..018891e93643 --- /dev/null +++ b/sci-physics/cernlib/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + The CERN Program Library is a large collection of general purpose + libraries and modules maintained and offered in both source and + object code form on the CERN central computers. Most of these + programs were developed at CERN and are therefore oriented towards + the needs of a physics research laboratory that is general + mathematics, data analysis, detectors simulation, data-handling + etc... applicable to a wide range of problems. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/clhep/Manifest b/sci-physics/clhep/Manifest new file mode 100644 index 000000000000..3f7d07e4adb1 --- /dev/null +++ b/sci-physics/clhep/Manifest @@ -0,0 +1,15 @@ +DIST clhep-2.1.4.1.tgz 1866250 SHA256 adeb7ad87b810f772b609e77eacc60fd3e1f949e694a434705e6759cdac41fe4 SHA512 ff5eb76ddf740635c17f01c62679ae7c22c152f96684315f059744ab67e420e51ba9c1ae0ac745b2890d1ddb6a678999b61d44c36e358c1d95c6b57362f3fae0 WHIRLPOOL da4fd1087b0c92f5a6f8bec060b4e6eee0091327defb9e2d71721c09b8c1f773d3ed377567a378dbb48156426ecfdb638049e10122fc5b2bcf2a7fe560e1ebd0 +DIST clhep-2.1.4.2.tgz 1838675 SHA256 ffd72997fb921fa7ef770c40c6bb12f603aa4761e642dc577160d1ee2aa695f0 SHA512 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+SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/clhep-2.1.4.2.ebuild b/sci-physics/clhep/clhep-2.1.4.2.ebuild new file mode 100644 index 000000000000..39b91169a162 --- /dev/null +++ b/sci-physics/clhep/clhep-2.1.4.2.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/clhep-2.2.0.1.ebuild b/sci-physics/clhep/clhep-2.2.0.1.ebuild new file mode 100644 index 000000000000..39b91169a162 --- /dev/null +++ b/sci-physics/clhep/clhep-2.2.0.1.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/clhep-2.2.0.5.ebuild b/sci-physics/clhep/clhep-2.2.0.5.ebuild new file mode 100644 index 000000000000..f21569474620 --- /dev/null +++ b/sci-physics/clhep/clhep-2.2.0.5.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="amd64 hppa ppc x86 ~amd64-linux ~x86-linux ~x64-macos" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/clhep-2.3.1.0.ebuild b/sci-physics/clhep/clhep-2.3.1.0.ebuild new file mode 100644 index 000000000000..39b91169a162 --- /dev/null +++ b/sci-physics/clhep/clhep-2.3.1.0.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://www.cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( virtual/latex-base )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # no batch mode to allow parallel building (bug #437482) + sed -i \ + -e 's:-interaction=batchmode::g' \ + cmake/Modules/ClhepBuildTex.cmake || die + # gentoo doc directory + sed -i \ + -e "/DESTINATION/s:doc:share/doc/${PF}:" \ + cmake/Modules/ClhepBuildTex.cmake */doc/CMakeLists.txt || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + $(cmake-utils_use_enable test TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure + use doc && MAKEOPTS+=" -j1" +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/clhep-2.3.3.1.ebuild b/sci-physics/clhep/clhep-2.3.3.1.ebuild new file mode 100644 index 000000000000..5238ed7061c7 --- /dev/null +++ b/sci-physics/clhep/clhep-2.3.3.1.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils multilib + +DESCRIPTION="High Energy Physics C++ library" +HOMEPAGE="http://cern.ch/clhep" +SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/${P}.tgz" +LICENSE="GPL-3 LGPL-3" +SLOT="2/${PV}" +KEYWORDS="~amd64 ~hppa ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos" + +IUSE="doc static-libs test" +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[latex] )" + +S="${WORKDIR}/${PV}/CLHEP" + +src_prepare() { + # respect flags + sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die + # dont build test if not asked + if ! use test; then + sed -i \ + -e '/add_subdirectory(test)/d' \ + */CMakeLists.txt || die + fi + # gentoo doc directory + if use doc; then + grep -rl 'share/doc/CLHEP' | + xargs sed -i \ + -e "s:share/doc/CLHEP:share/doc/${PF}:" \ + {.,*}/CMakeLists.txt || die + fi +} + +src_configure() { + append-cxxflags $(test-flags-CXX -std=c++11) + local mycmakeargs=( + $(cmake-utils_use test ENABLE_TESTING) + $(cmake-utils_use doc CLHEP_BUILD_DOCS) + ) + DESTDIR="${ED}" cmake-utils_src_configure +} + +src_install() { + cmake-utils_src_install + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a +} diff --git a/sci-physics/clhep/metadata.xml b/sci-physics/clhep/metadata.xml new file mode 100644 index 000000000000..abaa89137b51 --- /dev/null +++ b/sci-physics/clhep/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + A Class Library for High Energy Physics is intended to be a set of + HEP-specific foundation and utility classes such as random + generators, physics vectors, geometry and linear algebra. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/espresso++/Manifest b/sci-physics/espresso++/Manifest new file mode 100644 index 000000000000..f97140b51f6d --- /dev/null +++ b/sci-physics/espresso++/Manifest @@ -0,0 +1,6 @@ +DIST espresso++-1.9.4.tar.gz 23954404 SHA256 dc08381259394a4bd076bfe9b4bd53d687911025258e3a17a473ada12e2e5e68 SHA512 0b5c8ad81c1d6b742909533c58cd791f1702270778f6f140e84108f0da8313418f7fa39d83de2e24f8308e887a1c41d2fcdd0a33ef505d08244a235f95fe611d WHIRLPOOL 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+LICENSE="GPL-3" +SLOT="0" +IUSE="test" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + virtual/mpi + dev-libs/boost:=[python,mpi,${PYTHON_USEDEP}] + sci-libs/fftw:3.0 + >=dev-python/mpi4py-2[${PYTHON_USEDEP}]" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MY_PN}-${PV}" + +src_configure() { + src_configure_internal() { + local mycmakeargs=( + -DEXTERNAL_BOOST=ON + -DEXTERNAL_MPI4PY=ON + -DWITH_RC_FILES=OFF + ) + cmake-utils_src_configure + } + python_foreach_impl src_configure_internal +} + +src_compile() { + python_foreach_impl cmake-utils_src_make +} + +src_test() { + python_foreach_impl cmake-utils_src_test +} + +src_install() { + python_foreach_impl cmake-utils_src_install +} diff --git a/sci-physics/espresso++/espresso++-9999.ebuild b/sci-physics/espresso++/espresso++-9999.ebuild new file mode 100644 index 000000000000..2f9ecca51ed3 --- /dev/null +++ b/sci-physics/espresso++/espresso++-9999.ebuild @@ -0,0 +1,58 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) +CMAKE_MAKEFILE_GENERATOR="ninja" + +inherit cmake-utils python-r1 + +DESCRIPTION="A Modern Multiscale Simulation Package for Soft Matter Systems" +HOMEPAGE="https://www.espresso-pp.de" + +MY_PN="${PN//+/p}" +if [[ ${PV} = 9999 ]]; then + EGIT_REPO_URI="https://github.com/${MY_PN}/${MY_PN}.git" + inherit git-r3 +else + SRC_URI="https://github.com/${MY_PN}/${MY_PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="test" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + virtual/mpi + dev-libs/boost:=[python,mpi,${PYTHON_USEDEP}] + sci-libs/fftw:3.0 + dev-python/mpi4py[${PYTHON_USEDEP}]" +DEPEND="${RDEPEND}" + +src_configure() { + src_configure_internal() { + local mycmakeargs=( + -DEXTERNAL_BOOST=ON + -DEXTERNAL_MPI4PY=ON + -DWITH_RC_FILES=OFF + ) + cmake-utils_src_configure + } + python_foreach_impl src_configure_internal +} + +src_compile() { + python_foreach_impl cmake-utils_src_make +} + +src_test() { + python_foreach_impl cmake-utils_src_test +} + +src_install() { + python_foreach_impl cmake-utils_src_install +} diff --git a/sci-physics/espresso++/metadata.xml b/sci-physics/espresso++/metadata.xml new file mode 100644 index 000000000000..1587252e7be8 --- /dev/null +++ b/sci-physics/espresso++/metadata.xml @@ -0,0 +1,16 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>junghans@gentoo.org</email> + <name>Christoph Junghans</name> + </maintainer> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <upstream> + <remote-id type="bitbucket">espressopp/espressopp</remote-id> + <remote-id type="github">espressopp/espressopp</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/espresso/Manifest b/sci-physics/espresso/Manifest new file mode 100644 index 000000000000..99ebd343ae24 --- /dev/null +++ b/sci-physics/espresso/Manifest @@ -0,0 +1,7 @@ +AUX 1056.patch 8628 SHA256 6071e5fe0d9de38a29096d33d60e42dd6aa64d578406ef5f2ec20b51d562b531 SHA512 7ecdb067e10cdb7c7c8568cdda5d9520844eeff44e8914beafc03a2f0cf90f178c872f0c126264952e6b9d8c62b79d0ddb38c1a5121b8beea5bc23da5dad16f2 WHIRLPOOL 857a9159507db09eabf73081fcad7c4e57a407413751d85323b6851bd1eb23b50f0e604c63c01992ffb46a41dc9333ff903c189a1b32811813d17a11fe56bcea +DIST espresso-4.0_pre20170228.tar.gz 23621395 SHA256 01e6770949db7bfad9dba3776a644dd0c0758e3781edf23363d7d2671ee14b01 SHA512 7d35648d447af3282a76d9d68cfe681734ec18794a38b09e0ae9233f63b62450c643643bcec999ea9c7d4ba070d4fc6f8dc64db8145f536ae017a67ff2d0e0e2 WHIRLPOOL 02ef0d937726a1abe3f8df4f19ed62008b69494304cf4d569d74936d834bcb20e4a0bd5d6edff009c74c8e16f6b14f9c794ff209c8e39e6d8eed785e5356d6d6 +EBUILD espresso-4.0_pre20170228.ebuild 2846 SHA256 7bd804306bd809b588c2626e739d15773583a1f04b29d7fc2b46daa87cd827c5 SHA512 0ee1f0c33564279084b8c86754252e8e1c1f319ddc3626f1a7fc8b18d77f0856da273c0047a28adabe9fd9f3118fe6635d3beabf2b24d5639be26d2bde0bd268 WHIRLPOOL 4792ef9f503b5d3660aea6b24ce2cba1d0ac6a916344ac46796c9d9be31385692e2f2c38f87e13a51acbc77b2f3c10ca595d6bc23e5839b2151c0363731ed253 +EBUILD espresso-9999.ebuild 3078 SHA256 55d78219202331da67de3f2ca03cb2dd7ab97f68ce31a778228f63f94b6ba650 SHA512 9ddc487b93d53cbd2c8f023023188cd7b8ab4707bcaf6db2072924a9a71140bd551e2799d6014b14dfc9d6d386d1fc4c760342f50241a207ec40c660e9e90bee WHIRLPOOL f78e1be4d5dad944bf3366a3676db75480a05bf147466c933dfb3c538018e7e082070b4984f969e9dd34b01e5a74deb5d059a072ddaea63b822d830579fe81a9 +MISC ChangeLog 3637 SHA256 6d274545de03efbd7e4a3359d7874f152b770223dceb7284642463bccd1fd178 SHA512 0a036149ff35a50efbd8f04679b5064e24b01da13553a27a2023fa6ae6465456059b5f456d14b965083fe4996dd62f8034a203238360787c556d21a1e25cbb27 WHIRLPOOL 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file mode 100644 index 000000000000..6177a3fe03f0 --- /dev/null +++ b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild @@ -0,0 +1,117 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +CMAKE_MAKEFILE_GENERATOR="ninja" + +inherit cmake-utils python-single-r1 savedconfig + +DESCRIPTION="Extensible Simulation Package for Research on Soft matter" +HOMEPAGE="http://espressomd.org" + +if [[ ${PV} = 9999 ]]; then + EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git" + EGIT_BRANCH="master" + inherit git-r3 + KEYWORDS="" +else + inherit vcs-snapshot + COMMIT="8a021f5e8b1d508f356f4419d360bd9dfb7fec2c" + SRC_URI="https://github.com/${PN}md/${PN}/archive/${COMMIT}.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="cuda doc examples +fftw +hdf5 test" + +REQUIRED_USE=" + ${PYTHON_REQUIRED_USE}" + +RDEPEND=" + ${PYTHON_DEPS} + >dev-python/cython-0.22[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) + fftw? ( sci-libs/fftw:3.0 ) + dev-libs/boost:=[mpi] + hdf5? ( sci-libs/hdf5:=[cxx] )" + +DEPEND="${RDEPEND} + doc? ( + app-doc/doxygen[dot] + dev-texlive/texlive-latexextra + virtual/latex-base )" + +DOCS=( AUTHORS NEWS README ChangeLog ) + +PATCHES=( "${FILESDIR}"/1056.patch ) + +src_prepare() { + use cuda && cuda_src_prepare + cmake-utils_src_prepare +} + +src_configure() { + mycmakeargs=( + -DWITH_CUDA=$(usex cuda) + -DPYTHON_EXECUTABLE="${PYTHON}" + -DWITH_TESTS=$(usex test) + -DWITH_SCAFACOS=ON + -DINSTALL_PYPRESSO=OFF + -DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw) + -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5) + -DCMAKE_SKIP_RPATH=YES + -DLIBDIR=$(get_libdir) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + use doc && cmake-utils_src_make doxygen + [[ ${PV} = 9999 ]] && use doc && cmake-utils_src_make ug dg tutorials +} + +src_install() { + local i docdir="${S}" + + cmake-utils_src_install + + insinto /usr/share/${PN}/ + doins ${CMAKE_BUILD_DIR}/myconfig-sample.hpp + + save_config ${CMAKE_BUILD_DIR}/src/core/myconfig-final.hpp + + if use doc; then + [[ ${PV} = 9999 ]] && docdir="${CMAKE_BUILD_DIR}" + newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf + newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf + for i in "${docdir}/doc/tutorials/python"/*/[0-9]*.pdf; do + newdoc "${i}" "tutorial_${i##*/}" + done + dodoc -r ${CMAKE_BUILD_DIR}/doc/doxygen/html + fi + + if use examples; then + insinto "/usr/share/${PN}/examples/" + doins -r samples/python/. + fi +} + +pkg_postinst() { + echo + elog "Please read and cite:" + elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006." + elog "https://dx.doi.org/10.1016/j.cpc.2005.10.005" + echo + elog "If you need more features, change" + elog "/etc/portage/savedconfig/${CATEGORY}/${PF}" + elog "and reemerge with USE=savedconfig" + echo + elog "For a full feature list see:" + elog "/usr/share/${PN}/myconfig-sample.hpp" + echo +} diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild new file mode 100644 index 000000000000..b841b4d4bc56 --- /dev/null +++ b/sci-physics/espresso/espresso-9999.ebuild @@ -0,0 +1,130 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +CMAKE_MAKEFILE_GENERATOR="ninja" + +inherit cmake-utils python-single-r1 savedconfig + +DESCRIPTION="Extensible Simulation Package for Research on Soft matter" +HOMEPAGE="http://espressomd.org" + +if [[ ${PV} = 9999 ]]; then + EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git" + EGIT_BRANCH="master" + inherit git-r3 + KEYWORDS="" +else + SRC_URI="mirror://nongnu/${PN}md/${P}.tar.gz" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="cuda doc examples +fftw +hdf5 packages +python tcl test" + +REQUIRED_USE=" + packages? ( tcl ) + || ( python tcl ) + ${PYTHON_REQUIRED_USE}" + +RDEPEND=" + ${PYTHON_DEPS} + python? ( + >dev-python/cython-0.22[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) + tcl? ( dev-lang/tcl:0= ) + cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) + fftw? ( sci-libs/fftw:3.0 ) + dev-libs/boost:=[mpi] + hdf5? ( sci-libs/hdf5:= ) + packages? ( dev-tcltk/tcllib )" + +DEPEND="${RDEPEND} + doc? ( + app-doc/doxygen[dot] + dev-texlive/texlive-latexextra + virtual/latex-base )" + +DOCS=( AUTHORS NEWS README ChangeLog ) + +src_prepare() { + use cuda && cuda_src_prepare + cmake-utils_src_prepare +} + +src_configure() { + mycmakeargs=( + -DWITH_CUDA=$(usex cuda) + -DPYTHON_EXECUTABLE="${PYTHON}" + -DWITH_PYTHON=$(usex python) + -DWITH_TCL=$(usex tcl) + -DWITH_TESTS=$(usex test) + -DWITH_SCAFACOS=ON + -DINSTALL_PYPRESSO=OFF + -DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw) + -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5) + -DCMAKE_SKIP_RPATH=YES + -DLIBDIR=$(get_libdir) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + use doc && cmake-utils_src_make doxygen + [[ ${PV} = 9999 ]] && use doc && cmake-utils_src_make ug dg tutorials +} + +src_install() { + local i docdir="${S}" + + cmake-utils_src_install + + insinto /usr/share/${PN}/ + doins ${CMAKE_BUILD_DIR}/myconfig-sample.hpp + + save_config ${CMAKE_BUILD_DIR}/src/core/myconfig-final.hpp + + if use doc; then + [[ ${PV} = 9999 ]] && docdir="${CMAKE_BUILD_DIR}" + newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf + newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf + for j in $(usev python) $(usev tcl); do + for i in "${docdir}/doc/tutorials/${j}"/*/[0-9]*.pdf; do + newdoc "${i}" "${j}_tutorial_${i##*/}" + done + done + dodoc -r ${CMAKE_BUILD_DIR}/doc/doxygen/html + fi + + if use examples; then + for i in $(usev python) $(usev tcl); do + insinto "/usr/share/${PN}/examples/${i}" + doins -r samples/${i}/. + done + fi + + if use packages; then + insinto /usr/share/${PN}/packages + doins -r packages/* + fi +} + +pkg_postinst() { + echo + elog "Please read and cite:" + elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006." + elog "https://dx.doi.org/10.1016/j.cpc.2005.10.005" + echo + elog "If you need more features, change" + elog "/etc/portage/savedconfig/${CATEGORY}/${PF}" + elog "and reemerge with USE=savedconfig" + echo + elog "For a full feature list see:" + elog "/usr/share/${PN}/myconfig-sample.hpp" + echo +} diff --git a/sci-physics/espresso/files/1056.patch b/sci-physics/espresso/files/1056.patch new file mode 100644 index 000000000000..18a478e446b1 --- /dev/null +++ b/sci-physics/espresso/files/1056.patch @@ -0,0 +1,190 @@ +From d075cbaa80ce0b484c8422be27c5b5680f6abee4 Mon Sep 17 00:00:00 2001 +From: Christoph Junghans <junghans@votca.org> +Date: Fri, 3 Mar 2017 16:05:45 -0700 +Subject: [PATCH] cmake: install all shared libs in back in libdir + +some libraries weren't installed and the python module path +isn't in the LD_LIBRARY_PATH and hence partly revert +80ad49e954f4a6590707fd86e4fd586682ad626d +--- + CMakeLists.txt | 4 ++++ + src/core/CMakeLists.txt | 4 ++-- + src/core/actor/CMakeLists.txt | 4 ++-- + src/core/constraints/CMakeLists.txt | 1 + + src/core/correlators/CMakeLists.txt | 1 + + src/core/immersed_boundary/CMakeLists.txt | 4 ++-- + src/core/object-in-fluid/CMakeLists.txt | 2 +- + src/core/observables/CMakeLists.txt | 1 + + src/core/scafacos/CMakeLists.txt | 2 +- + src/core/shapes/CMakeLists.txt | 1 + + src/core/utils/CMakeLists.txt | 1 + + src/script_interface/CMakeLists.txt | 1 + + 12 files changed, 18 insertions(+), 8 deletions(-) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index cf49c40..7a8bc15 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -238,6 +238,10 @@ if (NOT DEFINED DATA) + set(DATA "share/espresso") + endif(NOT DEFINED DATA) + ++if (NOT DEFINED LIBDIR) ++ set(LIBDIR "lib") ++endif(NOT DEFINED LIBDIR) ++ + if (NOT DEFINED BINDIR) + set(BINDIR "bin") + endif(NOT DEFINED BINDIR) +diff --git a/src/core/CMakeLists.txt b/src/core/CMakeLists.txt +index 9982a54..13bb052 100644 +--- a/src/core/CMakeLists.txt ++++ b/src/core/CMakeLists.txt +@@ -23,7 +23,7 @@ add_custom_target(EspressoConfig DEPENDS config-features.hpp config-features.cpp + add_dependencies(EspressoConfig myconfig) + + add_library(EspressoCore SHARED ${EspressoCore_SRC} config-features.cpp config-version.cpp) +-install(TARGETS EspressoCore LIBRARY DESTINATION ${PYTHON_INSTDIR}) ++install(TARGETS EspressoCore LIBRARY DESTINATION ${LIBDIR}) + add_dependencies(EspressoCore EspressoConfig) + + target_link_libraries(EspressoCore ${LIBRARIES} Actor ObjectInFluid ImmersedBoundary Shapes Constraints EspressoUtils Correlators Observables) +@@ -43,7 +43,7 @@ if(CUDA) + cuda_include_directories(${CMAKE_CURRENT_BINARY_DIR}) + + cuda_add_library(EspressoCuda SHARED ${EspressoCuda_SRC}) +- install(TARGETS EspressoCuda DESTINATION ${PYTHON_INSTDIR}) ++ install(TARGETS EspressoCuda DESTINATION ${PYTHON_INSTDIR}/espressomd) + add_dependencies(EspressoCuda EspressoConfig) + + set_target_properties(EspressoCuda PROPERTIES MACOSX_RPATH TRUE) +diff --git a/src/core/actor/CMakeLists.txt b/src/core/actor/CMakeLists.txt +index 0421243..1b5eafe 100644 +--- a/src/core/actor/CMakeLists.txt ++++ b/src/core/actor/CMakeLists.txt +@@ -1,7 +1,7 @@ + file(GLOB Actor_SRC *.cpp) + + add_library(Actor SHARED ${Actor_SRC}) +-install(TARGETS Actor LIBRARY DESTINATION ${PYTHON_INSTDIR} ARCHIVE DESTINATION ${PYTHON_INSTDIR}) ++install(TARGETS Actor LIBRARY DESTINATION ${LIBDIR} ARCHIVE DESTINATION ${LIBDIR}) + add_dependencies(Actor EspressoConfig) + + set_target_properties(Actor PROPERTIES MACOSX_RPATH TRUE) +@@ -9,7 +9,7 @@ set_target_properties(Actor PROPERTIES MACOSX_RPATH TRUE) + if(CUDA) + file(GLOB ActorCuda_SRC *.cu) + cuda_add_library(ActorCuda SHARED ${ActorCuda_SRC}) +- install(TARGETS ActorCuda DESTINATION ${PYTHON_INSTDIR}) ++ install(TARGETS ActorCuda DESTINATION ${PYTHON_INSTDIR}/espressomd) + add_dependencies(ActorCuda EspressoConfig) + + add_dependencies(Actor ActorCuda) +diff --git a/src/core/constraints/CMakeLists.txt b/src/core/constraints/CMakeLists.txt +index 0f5c043..d07ad77 100644 +--- a/src/core/constraints/CMakeLists.txt ++++ b/src/core/constraints/CMakeLists.txt +@@ -1,4 +1,5 @@ + file(GLOB Constraints_SRC Constraint.cpp) + add_library(Constraints SHARED ${Constraints_SRC}) ++install(TARGETS Constraints LIBRARY DESTINATION ${LIBDIR}) + add_dependencies(Constraints EspressoConfig) + set_target_properties(Constraints PROPERTIES MACOSX_RPATH TRUE) +diff --git a/src/core/correlators/CMakeLists.txt b/src/core/correlators/CMakeLists.txt +index c5ff02f..fcc3611 100644 +--- a/src/core/correlators/CMakeLists.txt ++++ b/src/core/correlators/CMakeLists.txt +@@ -1,4 +1,5 @@ + file(GLOB Correlators_SRC *.?pp) + add_library(Correlators SHARED ${Correlators_SRC}) ++install(TARGETS Correlators LIBRARY DESTINATION ${LIBDIR}) + add_dependencies(Correlators EspressoConfig) + set_target_properties(Correlators PROPERTIES MACOSX_RPATH TRUE) +diff --git a/src/core/immersed_boundary/CMakeLists.txt b/src/core/immersed_boundary/CMakeLists.txt +index ec7fb85..8e7285f 100644 +--- a/src/core/immersed_boundary/CMakeLists.txt ++++ b/src/core/immersed_boundary/CMakeLists.txt +@@ -1,13 +1,13 @@ + file(GLOB ImmersedBoundary_SRC *.cpp) + add_library(ImmersedBoundary SHARED ${ImmersedBoundary_SRC}) + set_target_properties(ImmersedBoundary PROPERTIES MACOSX_RPATH TRUE) +-install(TARGETS ImmersedBoundary LIBRARY DESTINATION ${PYTHON_INSTDIR} ARCHIVE DESTINATION ${PYTHON_INSTDIR}) ++install(TARGETS ImmersedBoundary LIBRARY DESTINATION ${LIBDIR} ARCHIVE DESTINATION ${LIBDIR}) + add_dependencies(ImmersedBoundary EspressoConfig) + + if(CUDA) + file(GLOB ImmersedBoundaryCuda_SRC *.cu) + cuda_add_library(ImmersedBoundaryCuda SHARED ${ImmersedBoundaryCuda_SRC}) +- install(TARGETS ImmersedBoundaryCuda DESTINATION ${PYTHON_INSTDIR}) ++ install(TARGETS ImmersedBoundaryCuda DESTINATION ${PYTHON_INSTDIR}/espressomd) + add_dependencies(ImmersedBoundaryCuda EspressoConfig) + + set_target_properties(ImmersedBoundaryCuda PROPERTIES MACOSX_RPATH TRUE) +diff --git a/src/core/object-in-fluid/CMakeLists.txt b/src/core/object-in-fluid/CMakeLists.txt +index 7154486..c25228a 100644 +--- a/src/core/object-in-fluid/CMakeLists.txt ++++ b/src/core/object-in-fluid/CMakeLists.txt +@@ -1,5 +1,5 @@ + file(GLOB ObjectInFluid_SRC *.cpp) + add_library(ObjectInFluid SHARED ${ObjectInFluid_SRC}) +-install(TARGETS ObjectInFluid LIBRARY DESTINATION ${PYTHON_INSTDIR} ARCHIVE DESTINATION ${PYTHON_INSTDIR}) ++install(TARGETS ObjectInFluid LIBRARY DESTINATION ${LIBDIR} ARCHIVE DESTINATION ${LIBDIR}) + add_dependencies(ObjectInFluid EspressoConfig) + set_target_properties(ObjectInFluid PROPERTIES MACOSX_RPATH TRUE) +diff --git a/src/core/observables/CMakeLists.txt b/src/core/observables/CMakeLists.txt +index 9813d86..51ab79d 100644 +--- a/src/core/observables/CMakeLists.txt ++++ b/src/core/observables/CMakeLists.txt +@@ -1,4 +1,5 @@ + file(GLOB Observables_SRC *.?pp) + add_library(Observables SHARED ${Observables_SRC}) ++install(TARGETS Observables LIBRARY DESTINATION ${LIBDIR}) + add_dependencies(Observables EspressoConfig) + set_target_properties(Observables PROPERTIES MACOSX_RPATH TRUE) +diff --git a/src/core/scafacos/CMakeLists.txt b/src/core/scafacos/CMakeLists.txt +index 1479683..3028ca0 100644 +--- a/src/core/scafacos/CMakeLists.txt ++++ b/src/core/scafacos/CMakeLists.txt +@@ -2,7 +2,7 @@ include_directories(${SCAFACOS_INCLUDE_DIRS}) + + file(GLOB Scafacos_SRC *.cpp) + add_library(Scafacos SHARED ${Scafacos_SRC}) +-install(TARGETS Scafacos DESTINATION ${PYTHON_INSTDIR}) ++install(TARGETS Scafacos DESTINATION ${PYTHON_INSTDIR}/espressomd) + add_dependencies(Scafacos EspressoConfig) + + target_link_libraries(Scafacos ${SCAFACOS_LDFLAGS}) +diff --git a/src/core/shapes/CMakeLists.txt b/src/core/shapes/CMakeLists.txt +index 0e5ecaa..5be3a9d 100644 +--- a/src/core/shapes/CMakeLists.txt ++++ b/src/core/shapes/CMakeLists.txt +@@ -1,4 +1,5 @@ + file(GLOB Shapes_SRC *.cpp) + add_library(Shapes SHARED ${Shapes_SRC}) ++install(TARGETS Shapes LIBRARY DESTINATION ${LIBDIR}) + add_dependencies(Shapes EspressoConfig) + set_target_properties(Shapes PROPERTIES MACOSX_RPATH TRUE) +diff --git a/src/core/utils/CMakeLists.txt b/src/core/utils/CMakeLists.txt +index ec0f6f7..4cd8ada 100644 +--- a/src/core/utils/CMakeLists.txt ++++ b/src/core/utils/CMakeLists.txt +@@ -1,3 +1,4 @@ + file(GLOB EspressoUtils_SRC *.cpp) + add_library(EspressoUtils SHARED ${EspressoUtils_SRC}) ++install(TARGETS EspressoUtils LIBRARY DESTINATION ${LIBDIR}) + set_target_properties(EspressoUtils PROPERTIES MACOSX_RPATH TRUE) +diff --git a/src/script_interface/CMakeLists.txt b/src/script_interface/CMakeLists.txt +index 8aff034..59c1c9d 100644 +--- a/src/script_interface/CMakeLists.txt ++++ b/src/script_interface/CMakeLists.txt +@@ -28,6 +28,7 @@ if(H5MD) + ) + endif(H5MD) + add_library(EspressoScriptInterface SHARED ${EspressoScriptInterface_SRC}) ++install(TARGETS EspressoScriptInterface LIBRARY DESTINATION ${LIBDIR}) + add_dependencies(EspressoScriptInterface EspressoConfig EspressoConfig) + set_target_properties(EspressoScriptInterface PROPERTIES MACOSX_RPATH TRUE) + target_link_libraries(EspressoScriptInterface EspressoCore) +-- +2.10.2 + diff --git a/sci-physics/espresso/metadata.xml b/sci-physics/espresso/metadata.xml new file mode 100644 index 000000000000..f162adc22dc1 --- /dev/null +++ b/sci-physics/espresso/metadata.xml @@ -0,0 +1,20 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>junghans@gentoo.org</email> + <name>Christoph Junghans</name> + </maintainer> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <use> + <flag name="cuda">Enable cuda support</flag> + <flag name="examples">Installs the examples</flag> + <flag name="packages">Installs extra TCL subpackages</flag> + </use> + <upstream> + <remote-id type="github">espressomd/espresso</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/fastjet/Manifest b/sci-physics/fastjet/Manifest new file mode 100644 index 000000000000..b1c9bdfd04ff --- /dev/null +++ b/sci-physics/fastjet/Manifest @@ -0,0 +1,9 @@ +AUX fastjet-3.0.3-system-siscone.patch 4191 SHA256 57d1bc7d85d2dbc0fe4d8b38727562db8a8758c6b33bc3cc2d4363d263f63a5d SHA512 34ba5e61364f9fe090389edbeda4370b2707e89fab2a00e941cabe496f8e7cdd65fb1fccdb48f000247b0e6bb3abc79bb995931fd4a9709584eed8eaab42957c WHIRLPOOL 217436144a424196b96f5d123ea00c9be8a5a4c44011e6605208198e64430ecbd737e8dfe4ba327b58c234551fa9308220e7fac5d71b9d36bb58b727a0e34d21 +AUX fastjet-3.0.6-system-siscone.patch 3726 SHA256 10f150979e7f1f06c71d57b22d6161332ebddbef20e0ce1caa7787e512e72125 SHA512 7522e3fd0fe789bc5b3172c2c26566136004b828a46a81fb0ec39bb6bedbf358efc0b51acab8cb19a40dd5b4138190f87655ddd2679cc91c819f5c7c9e9f4c57 WHIRLPOOL 3a45e02c436eba0314ca5a6e6a589afd042f083ffbbeb13f3c2317b540333c33b1a8d021adaab7e68aee8f3c7d1f5bf1313bcc24aaa6f51c06e5ddec04f5d0f7 +DIST fastjet-3.0.3.tar.gz 2240610 SHA256 6a3e5869cf43b325c7222a925e195b2bd624db922958a926cb4211c00882a50d SHA512 1fcdd0998d222ae089f10676ae1048fdce3e90f6aef3cd51463719b7ab26f8bcdd599d9521c6f9ef18e3989dbffd7f06da717ce845ab7e486a99433129b56f41 WHIRLPOOL b43091b978bde5189ed009ad424934d45607717bfc81e4d0b49c1ce634650bbf9e51019c7bfb0f6ce6298a697e6c8be296feaae1ac31bd2184e44b53a538ba48 +DIST fastjet-3.0.6.tar.gz 2216501 SHA256 9718f1d014afe4433bc0612a67a050d720c486fcfa7ad9c9b96bf087b0f3da0b SHA512 1f01b7ed0e07bd94c88faa123f72c2e3bcd81ad32ab4d03dc0a18dd18635f3b18ba8d339176b0ef1d6e58cecd9f37aaea30b4ad909d2782ce5be7c11e205c3a5 WHIRLPOOL 8c1aeab2724940e41ca6eed093582d6d9a5424b7f2b86af00bd7e1fedd3df0157538c6d97ff08147a4e3a5300d035d683df31b4a7a9d36bc9c14eca9375ae1e1 +EBUILD fastjet-3.0.3-r1.ebuild 1236 SHA256 1625bdf20e2085ba255130295b61232770ac7bf9fc51d5113a98a42786ee748e SHA512 525a1a10764428f12d3fc6a0f89251f9d5396e5a1cd3252c15373d80466e605c59faedb8a20a0d280a4f2bc11e3d53cc58ebc11b7667089263efefd8e52c64b1 WHIRLPOOL bd7e8470f6cb521c9465225680100e37342f701ed0d5a5d41e8e179d4f79d3bc432a52e56b591d1528dd1e9a96116c16517ff28704e4574f7d04dafe8e7faadf +EBUILD fastjet-3.0.6-r1.ebuild 1240 SHA256 eafa5722af123c090884a980257ceeded52acb3f07ca287e01435358ecb7ffb8 SHA512 36b884732b7fcc2467cb383decdc285b8cc23802da1a000f6e7942a5faad5c32e36f9886847e4baabbc39c540042ebcdb7dbdc4fa916af9a68dd670974e7b33a WHIRLPOOL 9c2a72b98e98c487c07d9104e2db981bb3aeb5d01da6b0b09942672ddf5ca590ae596a7a4a33f4c414c59df8d30dccaaa7f91f4cf323c60dd8acc381e9c73c79 +MISC ChangeLog 2582 SHA256 c84541147fe75c8c6efaf3e918e01fddee3d4825057ba682ec71cee752f342f3 SHA512 42d49bd78b9562f66e8e036432414bfb651c94df7e4ca80edfbeb58e0398b00d60e3df5e11403a0c13b42d690ddf700e0d72f6d375906d069caa16622b63545b WHIRLPOOL bde93b60fdfef21595ff1d4fc2456c907b5ba0be9fda7eb801b9a5257329977eb5f920b7444af89800e2fd70533d09e25e414d92be3a36268db1dde58a576273 +MISC ChangeLog-2015 2175 SHA256 64bb1e7d93c42de38d896c41046a5d0be2caac69f26cd454288e044df5244c9e SHA512 106962af37f72ee1cdc092edb62a0873dbb7a454bd1dfe8b11f973e8a52d6b8e2d2ac7c3003e087d1cbc60fbe9737d7c2c717f2168e470258b8b19e79b1df9c1 WHIRLPOOL 47bd675e4f27cba65c815e2fd66631cdf80427fc98fdc35c40ab1f0f9693c0440e18ee44c3494c59a4b4df29d083c31c9c3421300009b636f7059e5005cd75af +MISC metadata.xml 846 SHA256 20a5d280b3f1fa7d3d9eadeed95a9abc19f2c513a0b4f7616e8ac24fef7acee2 SHA512 7a785ebae9232cef55c62ada47e4ec87507b6e4c7115f928fa3260474e67f56db336f7698833fe995d4f046b7013c88f62faf71758a881a86c982fe60a92c40a WHIRLPOOL 22a351a0976b9abc2fac3dced2c312021c0c6b65f3a2218e43c8e4c5ee8ca9c89e5b27016d80c5ad1a434079828b14d93f3bb26d61eebbdcf5fb7861ddc3a03c diff --git a/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild b/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild new file mode 100644 index 000000000000..a17324679e4d --- /dev/null +++ b/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_AUTORECONF=yes + +FORTRAN_NEEDED=plugins + +inherit autotools-utils fortran-2 flag-o-matic + +DESCRIPTION="Fast implementation of several recombination jet algorithms" +HOMEPAGE="http://www.fastjet.fr/" +SRC_URI="${HOMEPAGE}/repo/${P}.tar.gz" + +LICENSE="GPL-2 QPL" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="cgal doc examples +plugins static-libs" + +RDEPEND="cgal? ( sci-mathematics/cgal )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] ) + plugins? ( sci-physics/siscone )" + +PATCHES=( "${FILESDIR}"/${P}-system-siscone.patch ) + +src_configure() { + use cgal && has_version sci-mathematics/cgal[gmp] && append-ldflags -lgmp + local myeconfargs=( + $(use_enable cgal) + $(use_enable plugins allplugins) + $(use_enable plugins allcxxplugins) + ) + autotools-utils_src_configure +} + +src_compile() { + autotools-utils_src_compile + if use doc; then + doxygen Doxyfile || die + fi +} + +src_install() { + autotools-utils_src_install + use doc && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF} + find example \ + -name Makefile -or Makefile.in -or Makefile.am -delete + doins -r example/* + fi +} diff --git a/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild b/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild new file mode 100644 index 000000000000..43aa5d3d01d9 --- /dev/null +++ b/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +FORTRAN_NEEDED=plugins +AUTOTOOLS_AUTORECONF=1 + +inherit autotools-utils fortran-2 flag-o-matic + +DESCRIPTION="Fast implementation of several recombination jet algorithms" +HOMEPAGE="http://www.fastjet.fr/" +SRC_URI="${HOMEPAGE}/repo/${P}.tar.gz" + +LICENSE="GPL-2 QPL" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="cgal doc examples +plugins static-libs" + +RDEPEND="cgal? ( sci-mathematics/cgal )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[dot] ) + plugins? ( sci-physics/siscone:0= )" + +PATCHES=( "${FILESDIR}"/${P}-system-siscone.patch ) + +src_configure() { + use cgal && \ + has_version sci-mathematics/cgal[gmp] && append-ldflags -lgmp + local myeconfargs=( + $(use_enable cgal) + $(use_enable plugins allplugins) + $(use_enable plugins allcxxplugins) + ) + autotools-utils_src_configure +} + +src_compile() { + autotools-utils_src_compile + if use doc; then + doxygen Doxyfile || die + fi +} + +src_install() { + autotools-utils_src_install + use doc && dohtml -r html/* + if use examples; then + insinto /usr/share/doc/${PF} + find example \ + -name Makefile -or Makefile.in -or Makefile.am -delete + doins -r example/* + fi +} diff --git a/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch b/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch new file mode 100644 index 000000000000..b74b8e4e9033 --- /dev/null +++ b/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch @@ -0,0 +1,83 @@ +diff -Nur fastjet-3.0.3.orig/configure.ac fastjet-3.0.3/configure.ac +--- fastjet-3.0.3.orig/configure.ac 2012-06-25 15:15:32.000000000 +0100 ++++ fastjet-3.0.3/configure.ac 2012-07-24 18:39:11.000000000 +0100 +@@ -14,7 +14,7 @@ + dnl - the first macro needs to place the files in the correct + dnl dir in order to have the correct -I options for the remote build + dnl - see Makefile.am for distcleaning AX_PREFIX_CONFIG_H leftovers +-AM_CONFIG_HEADER(include/fastjet/config_raw.h:config.h.in) ++AC_CONFIG_HEADERS(include/fastjet/config_raw.h:config.h.in) + AX_PREFIX_CONFIG_H(include/fastjet/config_auto.h,FASTJET,include/fastjet/config_raw.h) + + dnl check autoconf version +@@ -252,6 +252,12 @@ + fi + + dnl SISCone ++AC_ARG_WITH(bundle-siscone, ++ [ --with-bundle-siscone Build the bundled SISCone library [default=no]], ++ [bundle_siscone=$withval], ++ [bundle_siscone=no]) ++AM_CONDITIONAL(BUNDLE_SISCONE, test x$bundle_siscone != xno) ++ + ACX_CHECK_PLUGIN(SISCone, siscone, SISCONE, yes, + [CONFIG_LIBS_PLUGINS=${CONFIG_LIBS_PLUGINS}" -lsiscone_spherical -lsiscone" + CONFIG_LIBS_PLUGINS_STATIC=${CONFIG_LIBS_PLUGINS_STATIC}" \${installationdir}/lib/libsiscone.a \${installationdir}/lib/libsiscone_spherical.a"]) +diff -Nur fastjet-3.0.3.orig/example/Makefile.am fastjet-3.0.3/example/Makefile.am +--- fastjet-3.0.3.orig/example/Makefile.am 2012-06-13 15:14:58.000000000 +0100 ++++ fastjet-3.0.3/example/Makefile.am 2012-07-24 18:26:15.000000000 +0100 +@@ -43,7 +43,7 @@ + 03_plugin_CXXFLAGS = $(AM_CXXFLAGS) $(CGAL_CPPFLAGS) -I$(srcdir)/../include + 03_plugin_LDADD = ../src/libfastjet.la $(CGAL_LIBS) + 03_plugin_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la + else + EXTRA_DIST += 03-plugin.cc + endif +@@ -125,7 +125,7 @@ + fastjet_areas_LDADD = ../src/libfastjet.la $(CGAL_LIBS) + if BUILD_PLUGIN_SISCONE + fastjet_areas_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la + endif + + fastjet_timing_plugins_SOURCES = fastjet_timing_plugins.cc CmdLine.cc +@@ -135,7 +135,7 @@ + fastjet_timing_plugins_LDADD += ../tools/libfastjettools.la + if BUILD_PLUGIN_SISCONE + fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la + endif + if BUILD_PLUGIN_CDFCONES + fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/CDFCones +diff -Nur fastjet-3.0.3.orig/plugins/SISCone/Makefile.am fastjet-3.0.3/plugins/SISCone/Makefile.am +--- fastjet-3.0.3.orig/plugins/SISCone/Makefile.am 2012-06-13 15:14:51.000000000 +0100 ++++ fastjet-3.0.3/plugins/SISCone/Makefile.am 2012-07-24 18:36:56.000000000 +0100 +@@ -1,11 +1,22 @@ +-SUBDIRS = siscone fastjet . ++SUBDIRS = fastjet . + + if MONOLITHIC_PLUGINS + noinst_LTLIBRARIES = libSISConePlugin.la + else + lib_LTLIBRARIES = libSISConePlugin.la + endif +-libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/siscone -I$(srcdir)/../../include ++libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/../../include ++ ++if BUNDLE_SISCONE ++SUBDIRS += siscone ++libSISConePlugin_la_CXXFLAGS += -I$(srcdir)/siscone ++libSISConePlugin_la_LIBADD = \ ++ $(top_builddir)/plugins/SISCone/siscone/siscone/libsiscone.la \ ++ $(top_builddir)/plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++else ++libSISConePlugin_la_LIBADD = -lsiscone -lsiscone_spherical ++endif ++ + libSISConePlugin_la_SOURCES = SISConePlugin.cc SISConeSphericalPlugin.cc + + EXTRA_DIST = makefile.static diff --git a/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch b/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch new file mode 100644 index 000000000000..d3995473fe54 --- /dev/null +++ b/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch @@ -0,0 +1,74 @@ +diff -Nur fastjet-3.0.6.orig/configure.ac fastjet-3.0.6/configure.ac +--- fastjet-3.0.6.orig/configure.ac 2014-05-06 10:29:55.240632504 -0700 ++++ fastjet-3.0.6/configure.ac 2014-05-06 10:36:20.156246416 -0700 +@@ -261,6 +261,12 @@ + fi + + dnl SISCone ++AC_ARG_WITH(bundle-siscone, ++ [ --with-bundle-siscone Build the bundled SISCone library [default=no]], ++ [bundle_siscone=$withval], ++ [bundle_siscone=no]) ++AM_CONDITIONAL(BUNDLE_SISCONE, test x$bundle_siscone != xno) ++ + ACX_CHECK_PLUGIN(SISCone, siscone, SISCONE, yes, + [CONFIG_LIBS_PLUGINS=${CONFIG_LIBS_PLUGINS}" -lsiscone_spherical -lsiscone" + CONFIG_LIBS_PLUGINS_STATIC=${CONFIG_LIBS_PLUGINS_STATIC}" \${installationdir}/lib/libsiscone.a \${installationdir}/lib/libsiscone_spherical.a"]) +diff -Nur fastjet-3.0.6.orig/example/Makefile.am fastjet-3.0.6/example/Makefile.am +--- fastjet-3.0.6.orig/example/Makefile.am 2014-05-06 10:29:55.239632499 -0700 ++++ fastjet-3.0.6/example/Makefile.am 2014-05-06 10:36:20.156246416 -0700 +@@ -43,7 +43,7 @@ + 03_plugin_CXXFLAGS = $(AM_CXXFLAGS) $(CGAL_CPPFLAGS) -I$(srcdir)/../include + 03_plugin_LDADD = ../src/libfastjet.la $(CGAL_LIBS) + 03_plugin_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la + else + EXTRA_DIST += 03-plugin.cc + endif +@@ -125,7 +125,7 @@ + fastjet_areas_LDADD = ../src/libfastjet.la $(CGAL_LIBS) + if BUILD_PLUGIN_SISCONE + fastjet_areas_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la + endif + + fastjet_timing_plugins_SOURCES = fastjet_timing_plugins.cc CmdLine.cc +@@ -135,7 +135,7 @@ + fastjet_timing_plugins_LDADD += ../tools/libfastjettools.la + if BUILD_PLUGIN_SISCONE + fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone +-fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la + endif + if BUILD_PLUGIN_CDFCONES + fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/CDFCones +diff -Nur fastjet-3.0.6.orig/plugins/SISCone/Makefile.am fastjet-3.0.6/plugins/SISCone/Makefile.am +--- fastjet-3.0.6.orig/plugins/SISCone/Makefile.am 2014-05-06 10:29:55.250632584 -0700 ++++ fastjet-3.0.6/plugins/SISCone/Makefile.am 2014-05-06 10:36:20.156246416 -0700 +@@ -1,11 +1,22 @@ +-SUBDIRS = siscone fastjet . ++SUBDIRS = fastjet . + + if MONOLITHIC_PLUGINS + noinst_LTLIBRARIES = libSISConePlugin.la + else + lib_LTLIBRARIES = libSISConePlugin.la + endif +-libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/siscone -I$(srcdir)/../../include ++libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/../../include ++ ++if BUNDLE_SISCONE ++SUBDIRS += siscone ++libSISConePlugin_la_CXXFLAGS += -I$(srcdir)/siscone ++libSISConePlugin_la_LIBADD = \ ++ $(top_builddir)/plugins/SISCone/siscone/siscone/libsiscone.la \ ++ $(top_builddir)/plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la ++else ++libSISConePlugin_la_LIBADD = -lsiscone -lsiscone_spherical ++endif ++ + libSISConePlugin_la_SOURCES = SISConePlugin.cc SISConeSphericalPlugin.cc + + EXTRA_DIST = makefile.static diff --git a/sci-physics/fastjet/metadata.xml b/sci-physics/fastjet/metadata.xml new file mode 100644 index 000000000000..d4c5f71dd1d3 --- /dev/null +++ b/sci-physics/fastjet/metadata.xml @@ -0,0 +1,21 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + The FastJet package provides a fast implementation of the + longitudinally invariant kt longitudinally invariant inclusive + Cambridge/Aachen and anti-kt jet finders and a uniform interface + to external jet finders (notably SISCone) via a plugin + mechanism. It also includes tools for calculating jet areas and + performing background (pileup/UE) subtraction. +</longdescription> +<use> + <flag name="plugins"> Build all standard and C++ plugins </flag> + <flag name="cgal"> Use <pkg>sci-mathematics/cgal</pkg> instead of + bundled algorithms</flag> +</use> +</pkgmetadata> diff --git a/sci-physics/geant-data/Manifest b/sci-physics/geant-data/Manifest new file mode 100644 index 000000000000..5b35784c4d5d --- /dev/null +++ b/sci-physics/geant-data/Manifest @@ -0,0 +1,38 @@ +DIST G4ABLA.3.0.tar.gz 54909 SHA256 ff0b77be6b36204eeeba71099f6b7530edd80b79eb015994535bc4334bc821eb SHA512 905a56c142793de005dc5771509cdd8c4f98e596b95223a1a058cbf614cf48805478839eeec3a29594daf3d89c6b4d72cb33b016a596cdadc4247e452afbd526 WHIRLPOOL daa65dd65160cfa62b1a7b747702cc6cf41230f95b406e2e5e18a743524647842639e8c76906334671d00860b88139f4812c811307803bdc4260468b4c6703cb +DIST G4EMLOW.6.32.tar.gz 17724068 SHA256 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db0f907ab8311eecdf2d23b7ef32e0d2d0dfa493b384fe7f544152fea739d3930c7d4df633243d9e262c4f594edaebde19bdcd68d4a7f20b9a67984476990a2e WHIRLPOOL 66c57e76d6f1ce1e13c756864f5ecf8285e2d0a08a4c533996b3c76ebf3147687de859093c508b4579f02980111e20e42cef1e5da1d794a65bb5b3f2fb713d55 +MISC metadata.xml 418 SHA256 b14e29087bcbad72e779289e56b121471f045e38504a7cc76b86701d66915bbd SHA512 863db541083480d61d59523207460417622fd9635ef36502e2298e8c37bf3730f24fa816e466f8d4d8f9efc343f596513cdafa816e530aacd67c7a9b27199d79 WHIRLPOOL 25e54256f956a06b3601fe47d49b9b107d11258cdc8bcb2cf5499758b5e90d294ddb1eadce0f63c171562ddb34ff08d5ca8fda3a1681cf2a99fb94a6b63e46be diff --git a/sci-physics/geant-data/geant-data-4.10.00.ebuild b/sci-physics/geant-data/geant-data-4.10.00.ebuild new file mode 100644 index 000000000000..d0ee1e2f8441 --- /dev/null +++ b/sci-physics/geant-data/geant-data-4.10.00.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +DESCRIPTION="Data files for Geant4 physical processes" +HOMEPAGE="http://geant4.cern.ch/" + +GEANT4_DATA=" + G4NDL.4.4 + G4EMLOW.6.35 + G4RadioactiveDecay.4.0 + G4SAIDDATA.1.1 + G4NEUTRONXS.1.4 + G4PII.1.3 + G4PhotonEvaporation.3.0 + G4ABLA.3.0 + RealSurface.1.0 + G4ENSDFSTATE.1.0" + +SRC_COM="http://geant4.cern.ch/support/source" +for d in ${GEANT4_DATA}; do + SRC_URI="${SRC_URI} ${SRC_COM}/${d}.tar.gz" +done + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=">=sci-physics/geant-${PV}:4" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + # unpack in destination only to avoid copy + return +} + +prout() { + for d in ${GEANT4_DATA}; do + local p=${d/.} + doins -r *${p/G4} + done +} + +src_install() { + sed -n "s,export \(G4.\+DATA=\"\).*\(/share/Geant.\+/data/.\+\) > /dev/null ; pwd\`,\1${EROOT%/}/usr\2,p" \ + "${EROOT}/usr/bin/geant4.sh" > 99geant-data + doenvd 99geant-data + local g4dir=/usr/$(sed -n 's|.*/\(share/Geant4.*/data\).*|\1|p' "${EROOT}/usr/bin/geant4.sh" | tail -n 1) + dodir ${g4dir} + cd "${ED}${g4dir}" + unpack ${A} +} diff --git a/sci-physics/geant-data/geant-data-4.10.01.ebuild b/sci-physics/geant-data/geant-data-4.10.01.ebuild new file mode 100644 index 000000000000..c3112e7be473 --- /dev/null +++ b/sci-physics/geant-data/geant-data-4.10.01.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +DESCRIPTION="Data files for Geant4 physical processes" +HOMEPAGE="http://geant4.cern.ch/" + +GEANT4_DATA=" + G4NDL.4.5 + G4EMLOW.6.41 + G4RadioactiveDecay.4.2 + G4SAIDDATA.1.1 + G4NEUTRONXS.1.4 + G4PII.1.3 + G4PhotonEvaporation.3.1 + G4ABLA.3.0 + RealSurface.1.0 + G4ENSDFSTATE.1.0" + +SRC_COM="http://geant4.cern.ch/support/source" +for d in ${GEANT4_DATA}; do + SRC_URI="${SRC_URI} ${SRC_COM}/${d}.tar.gz" +done + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=">=sci-physics/geant-${PV}:4" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + # unpack in destination only to avoid copy + return +} + +prout() { + for d in ${GEANT4_DATA}; do + local p=${d/.} + doins -r *${p/G4} + done +} + +src_install() { + sed -n "s,export \(G4.\+DATA=\"\).*\(/share/Geant.\+/data/.\+\) > /dev/null ; pwd\`,\1${EROOT%/}/usr\2,p" \ + "${EROOT}/usr/bin/geant4.sh" > 99geant-data + doenvd 99geant-data + local g4dir=/usr/$(sed -n 's|.*/\(share/Geant4.*/data\).*|\1|p' "${EROOT}/usr/bin/geant4.sh" | tail -n 1) + dodir ${g4dir} + cd "${ED}${g4dir}" + unpack ${A} +} diff --git a/sci-physics/geant-data/geant-data-4.10.02.ebuild b/sci-physics/geant-data/geant-data-4.10.02.ebuild new file mode 100644 index 000000000000..c3adb65924a5 --- /dev/null +++ b/sci-physics/geant-data/geant-data-4.10.02.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Data files for Geant4 physical processes" +HOMEPAGE="http://geant4.cern.ch/" + +GEANT4_DATA=" + G4NDL.4.5 + G4EMLOW.6.48 + G4PhotonEvaporation.3.2 + G4RadioactiveDecay.4.3 + G4SAIDDATA.1.1 + G4NEUTRONXS.1.4 + G4ABLA.3.0 + G4PII.1.3 + RealSurface.1.0 + G4ENSDFSTATE.1.2 + G4TENDL.1.0" + +SRC_COM="http://geant4.cern.ch/support/source" +for d in ${GEANT4_DATA}; do + SRC_URI="${SRC_URI} ${SRC_COM}/${d}.tar.gz" +done + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=">=sci-physics/geant-${PV}:4" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + # unpack in destination only to avoid copy + return +} + +src_install() { + sed -n "s,export \(G4.\+DATA=\"\).*\(/share/Geant.\+/data/.\+\) > /dev/null ; pwd\`,\1${EROOT%/}/usr\2,p" \ + "${EROOT}/usr/bin/geant4.sh" > 99geant-data + doenvd 99geant-data + local g4dir=/usr/$(sed -n 's|.*/\(share/Geant4.*/data\).*|\1|p' "${EROOT}/usr/bin/geant4.sh" | tail -n 1) + dodir ${g4dir} + cd "${ED}${g4dir}" + unpack ${A} +} diff --git a/sci-physics/geant-data/geant-data-4.10.03.ebuild b/sci-physics/geant-data/geant-data-4.10.03.ebuild new file mode 100644 index 000000000000..821922f9dfa4 --- /dev/null +++ b/sci-physics/geant-data/geant-data-4.10.03.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Data files for Geant4 physical processes" +HOMEPAGE="http://geant4.cern.ch/" + +GEANT4_DATA=" + G4NDL.4.5 + G4EMLOW.6.50 + G4PhotonEvaporation.4.3 + G4RadioactiveDecay.5.1 + G4SAIDDATA.1.1 + G4NEUTRONXS.1.4 + G4ABLA.3.0 + G4PII.1.3 + RealSurface.1.0 + G4ENSDFSTATE.2.1 + G4TENDL.1.3" + +SRC_COM="http://geant4.cern.ch/support/source" +for d in ${GEANT4_DATA}; do + SRC_URI="${SRC_URI} ${SRC_COM}/${d}.tar.gz" +done +unset d + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=">=sci-physics/geant-${PV}:4" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + # unpack in destination only to avoid copy + return +} + +src_install() { + sed -n "s,export \(G4.\+DATA=\"\).*\(/share/Geant.\+/data/.\+\) > /dev/null ; pwd\`,\1${EPREFIX}/usr\2,p" \ + "${EPREFIX}/usr/bin/geant4.sh" > 99geant-data || die + doenvd 99geant-data + local g4dir=/usr/$(sed -n 's|.*/\(share/Geant4.*/data\).*|\1|p' "${EPREFIX}/usr/bin/geant4.sh" | tail -n 1) + dodir ${g4dir} + cd "${ED%/}/${g4dir}" || die + unpack ${A} +} diff --git a/sci-physics/geant-data/geant-data-4.9.6_p02.ebuild b/sci-physics/geant-data/geant-data-4.9.6_p02.ebuild new file mode 100644 index 000000000000..2451cf3bd6c5 --- /dev/null +++ b/sci-physics/geant-data/geant-data-4.9.6_p02.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +DESCRIPTION="Data files for Geant4 physical processes" +HOMEPAGE="http://geant4.cern.ch/" + +NDLPV=4.2 +GEANT4_DATA=" + G4NDL.${NDLPV} + G4EMLOW.6.32 + G4RadioactiveDecay.3.6 + G4SAIDDATA.1.1 + G4NEUTRONXS.1.2 + G4PII.1.3 + G4PhotonEvaporation.2.3 + G4ABLA.3.0 + RealSurface.1.0" + +SRC_COM="http://geant4.cern.ch/support/source" +SRC_URI="${SRC_COM}/G4NDL${NDLPV}.TS.tar.gz" +for d in ${GEANT4_DATA}; do + SRC_URI="${SRC_URI} ${SRC_COM}/${d}.tar.gz" +done + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND="~sci-physics/geant-${PV}:4" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + # unpack in destination only to avoid copy + return +} + +prout() { + for d in ${GEANT4_DATA}; do + local p=${d/.} + doins -r *${p/G4} + done +} + +src_install() { + sed -n "s,export \(G4.\+DATA=\"\).*\(/share/Geant.\+/data/.\+\) > /dev/null ; pwd\`,\1${EROOT%/}/usr\2,p" \ + "${EROOT}/usr/bin/geant4.sh" > 99geant-data + doenvd 99geant-data + local g4dir=/usr/$(sed -n 's|.*/\(share/Geant4.*/data\).*|\1|p' "${EROOT}/usr/bin/geant4.sh" | tail -n 1) + dodir ${g4dir} + cd "${ED}${g4dir}" + unpack ${A} +} diff --git a/sci-physics/geant-data/metadata.xml b/sci-physics/geant-data/metadata.xml new file mode 100644 index 000000000000..5a993a4035bd --- /dev/null +++ b/sci-physics/geant-data/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + For specific, optional physics processes, Geant4 uses extra data + which are being installed with this package. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/geant-python/Manifest b/sci-physics/geant-python/Manifest new file mode 100644 index 000000000000..b248438fd5c3 --- /dev/null +++ b/sci-physics/geant-python/Manifest @@ -0,0 +1,10 @@ +AUX geant-python-4.10.0-config.patch 879 SHA256 472fdaabbc9bfc55e53e103c8c607f46ec254cb6cdb5d94f96fa0ec9a357eaa1 SHA512 409951aeaf6cb33d8ab0d70c94ab04901f449554c8e1e14706a40144e132d4f33543e85740d7f99ca32bfd28fac1e12ddd6deeee6d0b101c42283fdf74da5ea7 WHIRLPOOL 8e804ca3e0ad6d70fb9c1bf5201086108d6fceb1ac6035ebe498d05e77c9cab6156f775ff3d10eaae8a72fc83b33212aef87cdd512961ddb0fe22a8da79fcd0f +AUX geant-python-4.10.0-polycone.patch 609 SHA256 8a32107400595505079f119fe90d16e5399b41a00761e24d927c4d88d7e0710f SHA512 d65395f12928ca500452545c19bcdefd0b3740fb27c2ff2ccd01748d70347e1d3e8935d94e9b1ae142037c0930551e58bc6dd93dd944c3d712255555a639d5c5 WHIRLPOOL 0ca9675689078c901de99094d15ae6467d7ebcd3f6f49a3068d9ab00e6c2b42e0cccf51019c93d097a9d7fcb74572288b03da3f59cd81404a0d92ec1dd85b1ef +AUX geant-python-4.9.5-visverbose.patch 557 SHA256 0955cd39ce1f8e842e2804370359a4e367b14f4791a40fd653918c32884bed8a SHA512 6780065ef2ba4efa79bdd835e500f25309baf6b3d8bf2418b83f2cbb984a8b6a48d27e10a1327cd42e6e236663557fedb5bb2f9f34ee0d1631fc316868959fb0 WHIRLPOOL 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3f513bb26d0bb13756e2604e84a00fbbfd0491f7dffd79d424b31ad02154b3b7 SHA512 12958db78cddbcf273d01f5dc77638fdcfbc6cdd0e17db47a715c465700ef53699e8049dc24c8319184de216accd29b626ced19fbb69d20a83faf3e2ebebd422 WHIRLPOOL c18df269057bad095aa2e98e4b4f843e485ede320e3fd4d8ff5771d571d452a7771d49b2bcf146b5899295db896eed250aa1f8b563dccebb984c7eee207d483b +EBUILD geant-python-4.9.6_p02.ebuild 3490 SHA256 4f05255892c90850b15e86f6b41b9d367474dfba957505f85e5f639457218661 SHA512 6d119b9fc63e3d4e3556404f8e1d27af4f8b1f81f4ba13f95be171e3b03d7cb2ed51a138881e750212b96c6a32fe13cd250057607a72ad8452dca9198d442574 WHIRLPOOL a88f97e18d44cdada1678b01be861e1bab1221d9f9788fdf79a8f13059d7c4187f0d4e05fdbf4d404aee4813a83c20a885c568227586c24f7c9a23374a6677fa +MISC ChangeLog 2821 SHA256 9cd529521956344a8abdc626342454662d5793de2fa7b99213629dbeec7a0ae0 SHA512 c954c0ed9aa3d8615f4fe4e5e1ba14ef24e96172a16d901b2aca409faaf12502af3688d07b179958cc04cbd703a43bb99a5da910cd7e1debb1812963bfb116a0 WHIRLPOOL 0e567c0e4ce21998c631c1453411d6333e8b4455fc8c49a09278c50642aa0966e343ce18856a6e5ad323d0e9d0912361a5b5d65fbcac09f500040bf297274acc +MISC ChangeLog-2015 2344 SHA256 df12b674db14f4e8d144799ca4ac77c75e372e2125b322c28336b52433d2a63b SHA512 3964bdbf9af86e84c7239401b2ae71319560e8cf405fe0f7dc32f9f2b3da553de445cc07e699c8aee74707efb19646d47d0fdbe85f73730c41d7625f5998cab8 WHIRLPOOL 54b8feab52aa9f938eae05f4c3966aad61e5a78cd010dad0ce4153b2fce49fe259ba4dd99300baf2e78176a721bcd3d20409cfc2ee84d0795650f1e03bf51f05 +MISC metadata.xml 333 SHA256 0a8d137678edd11292fc65f6c113609c842fd895fb6d28449be9cfc71d955381 SHA512 3c56efce8e638e6f6ad80b982b464ee14fff38b07e02631eee8836a0e955e073cc5ca8cf0fad639eceec414c34de7d1b669511991c45ca89b15e9f10d6d61c66 WHIRLPOOL 487cbc93ca3b40f753226b35edbf465c5d5288dc2ab44c383dbdae0f5453228796f2052e7e272072b36d2111370d32882fa343f74b030b92b60c1f2f06bcabfd diff --git a/sci-physics/geant-python/files/geant-python-4.10.0-config.patch b/sci-physics/geant-python/files/geant-python-4.10.0-config.patch new file mode 100644 index 000000000000..50f4dabb43c3 --- /dev/null +++ b/sci-physics/geant-python/files/geant-python-4.10.0-config.patch @@ -0,0 +1,27 @@ +do not hard code PATH; QGSP.hh is renamed to G4QGSParticipants.hh in geant-4.10 + +http://bugzilla-geant4.kek.jp/show_bug.cgi?id=1545 +http://bugzilla-geant4.kek.jp/show_bug.cgi?id=1546 +Index: g4py/configure +=================================================================== +--- g4py.orig/configure ++++ g4py/configure +@@ -4,9 +4,6 @@ + # ====================================================================== + export LANG=C + +-PATH=/bin:/usr/bin +-export PATH +- + # ====================================================================== + # testing the echo features + # ====================================================================== +@@ -377,7 +374,7 @@ fi + + # --- + echo $ac_n "Checking for physics list support ...$ac_c" +-if [ -f "$g4_incdir"/QGSP.hh ]; then ++if [ -f "$g4_incdir"/G4QGSParticipants.hh ]; then + enable_physicslist=1 + fi + if [ $enable_physicslist = 0 ]; then diff --git a/sci-physics/geant-python/files/geant-python-4.10.0-polycone.patch b/sci-physics/geant-python/files/geant-python-4.10.0-polycone.patch new file mode 100644 index 000000000000..492e4700ac4f --- /dev/null +++ b/sci-physics/geant-python/files/geant-python-4.10.0-polycone.patch @@ -0,0 +1,15 @@ +polycone API has been changed. + +http://bugzilla-geant4.kek.jp/show_bug.cgi?id=1544 +Index: g4py/source/geometry/pyG4Polycone.cc +=================================================================== +--- g4py.orig/source/geometry/pyG4Polycone.cc ++++ g4py/source/geometry/pyG4Polycone.cc +@@ -96,7 +96,6 @@ void export_G4Polycone() + .def("GetStartPhi", &G4Polycone::GetStartPhi) + .def("GetEndPhi", &G4Polycone::GetEndPhi) + .def("IsOpen", &G4Polycone::IsOpen) +- .def("IsGeneric", &G4Polycone::IsGeneric) + .def("GetNumRZCorner", &G4Polycone::GetNumRZCorner) + + // operators diff --git a/sci-physics/geant-python/files/geant-python-4.9.5-visverbose.patch b/sci-physics/geant-python/files/geant-python-4.9.5-visverbose.patch new file mode 100644 index 000000000000..0508f28b6fa6 --- /dev/null +++ b/sci-physics/geant-python/files/geant-python-4.9.5-visverbose.patch @@ -0,0 +1,13 @@ +diff --git a/source/visualization/pyG4VisManager.cc b/source/visualization/pyG4VisManager.cc +index 33bb0d4..00f86a5 100644 +--- a/source/visualization/pyG4VisManager.cc ++++ b/source/visualization/pyG4VisManager.cc +@@ -41,7 +41,7 @@ using namespace boost::python; + // ==================================================================== + class PyG4VisManager : public G4VisManager { + public: +- PyG4VisManager() { SetVerboseLevel(quiet); } ++ PyG4VisManager() { SetVerboseLevel(all); } + ~PyG4VisManager() { } + + virtual void RegisterGraphicsSystems() { } diff --git a/sci-physics/geant-python/geant-python-4.10.00.ebuild b/sci-physics/geant-python/geant-python-4.10.00.ebuild new file mode 100644 index 000000000000..160244ef9e49 --- /dev/null +++ b/sci-physics/geant-python/geant-python-4.10.00.ebuild @@ -0,0 +1,122 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit python-r1 versionator multilib eutils + +MYP="geant$(replace_version_separator 3 .)" + +DESCRIPTION="Python bindings for Geant4" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="geant4" +SLOT="0" +IUSE="examples" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + ${PYTHON_DEPS} + dev-libs/boost:=[python,${PYTHON_USEDEP}] + dev-libs/xerces-c + =sci-physics/geant-${PV}*" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MYP}/environments/g4py" + +pkg_setup() { + if use amd64; then + ARG=linux64 + elif use x86; then + ARG=linux + else + die "platform unknown" + fi +} + +src_prepare() { + epatch "${FILESDIR}"/${PN}-4.9.5-visverbose.patch + epatch "${FILESDIR}"/${PN}-4.10.0-config.patch + epatch "${FILESDIR}"/${PN}-4.10.0-polycone.patch + sed -i -e "s/lib64/$(get_libdir)/g" configure || die + sed -i -e 's/-lG4clhep/-lCLHEP/g' config/g4py.gmk || die + # respect user toolchain and flags + sed -i \ + -e '/^CXX.*:=/d' \ + -e '/CXXFLAGS/s/-f\(template-depth-255\|inline-functions\|permissive\)//g' \ + -e "/CXXFLAGS/s/-O2/${CXXFLAGS}/g" \ + -e '/^rpathflag/s|:\($(rpath.)\)| -Wl,-rpath,\1 |g' \ + -e "s/\$(rpathflag)/\$(LDFLAGS) \$(rpathflag)/g" \ + config/sys/linux* || die + python_copy_sources + + run_sed() { + sed -i -e "s/\(python_exe=\)python/\1${EPYTHON}/" configure || die + [[ ${EPYTHON} == python3* ]] && sed -i -e "s/with_python3=0/with_python3=1/" configure + # let Geant4 module installed into python sitedir instead of default + sed -i \ + -e "/G4PY_LIBDIR :=/cG4PY_LIBDIR := $\(DESTDIR\)$(python_get_sitedir)/Geant4" \ + config/install.gmk || die "sed failed on config/install.gmk" + + local mfile + for mfile in source/python{3,}/GNUmakefile + do + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/Geant4" \ + "${mfile}" || die "sed failed on ${mfile}" + done + + # let g4py module installed into python sitedir instead of default + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/g4py" \ + config/site-install.gmk || die "sed failed on config/site-install.gmk" + for mfile in {processes/emcalculator,utils/MCScore}/{python3/,}GNUmakefile python/GNUmakefile + do + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/g4py" \ + "site-modules/${mfile}" || die "sed failed on site-modules/${mfile}" + done + + } + python_foreach_impl run_in_build_dir run_sed +} + +src_configure() { + run_configure() { + # not the autotools configure + ./configure ${ARG} \ + --prefix="${EPREFIX}/usr" \ + --with-g4install-dir="${EPREFIX}/usr" \ + --with-python-incdir="$(python_get_includedir)" \ + --with-python-libdir="${EPREFIX}/usr/$(get_libdir)" \ + --with-boost-incdir="${EPREFIX}/usr/include" \ + --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)" \ + --with-boost-python-lib="boost_python-${EPYTHON#python}" \ + --with-xercesc-incdir="${EPREFIX}/usr/include" \ + --with-xercesc-libdir="${EPREFIX}/usr/$(get_libdir)" \ + || die "configure failed" + } + python_foreach_impl run_in_build_dir run_configure +} + +src_compile() { + python_foreach_impl run_in_build_dir emake CPPVERBOSE=1 +} + +src_test() { + run_test() { + emake -C tests + } + python_foreach_impl run_in_build_dir run_test +} + +src_install() { + python_foreach_impl run_in_build_dir emake DESTDIR="${D}" install + dodoc README.md History + insinto /usr/share/doc/${PF} + use examples && doins -r examples +} diff --git a/sci-physics/geant-python/geant-python-4.9.6_p02.ebuild b/sci-physics/geant-python/geant-python-4.9.6_p02.ebuild new file mode 100644 index 000000000000..f590877fadab --- /dev/null +++ b/sci-physics/geant-python/geant-python-4.9.6_p02.ebuild @@ -0,0 +1,120 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit python-r1 versionator multilib eutils + +MYP="geant$(replace_version_separator 3 .)" + +DESCRIPTION="Python bindings for Geant4" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="geant4" +SLOT="0" +IUSE="examples" +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND=" + ${PYTHON_DEPS} + dev-libs/boost:=[python,${PYTHON_USEDEP}] + dev-libs/xerces-c + =sci-physics/geant-${PV}*" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MYP}/environments/g4py" + +pkg_setup() { + if use amd64; then + ARG=linux64 + elif use x86; then + ARG=linux + else + die "platform unknown" + fi +} + +src_prepare() { + epatch "${FILESDIR}"/${PN}-4.9.5-visverbose.patch + sed -i -e "s/lib64/$(get_libdir)/g" configure || die + sed -i -e 's/-lG4clhep/-lCLHEP/g' config/g4py.gmk || die + # respect user toolchain and flags + sed -i \ + -e '/^CXX.*:=/d' \ + -e '/CXXFLAGS/s/-f\(template-depth-255\|inline-functions\|permissive\)//g' \ + -e "/CXXFLAGS/s/-O2/${CXXFLAGS}/g" \ + -e '/^rpathflag/s|:\($(rpath.)\)| -Wl,-rpath,\1 |g' \ + -e "s/\$(rpathflag)/\$(LDFLAGS) \$(rpathflag)/g" \ + config/sys/linux* || die + python_copy_sources + + run_sed() { + sed -i -e "s/\(python_exe=\)python/\1${EPYTHON}/" configure || die + [[ ${EPYTHON} == python3* ]] && sed -i -e "s/with_python3=0/with_python3=1/" configure + # let Geant4 module installed into python sitedir instead of default + sed -i \ + -e "/G4PY_LIBDIR :=/cG4PY_LIBDIR := $\(DESTDIR\)$(python_get_sitedir)/Geant4" \ + config/install.gmk || die "sed failed on config/install.gmk" + + local mfile + for mfile in source/python{3,}/GNUmakefile + do + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/Geant4" \ + "${mfile}" || die "sed failed on ${mfile}" + done + + # let g4py module installed into python sitedir instead of default + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/g4py" \ + config/site-install.gmk || die "sed failed on config/site-install.gmk" + for mfile in {processes/emcalculator,utils/MCScore}/{python3/,}GNUmakefile python/GNUmakefile + do + sed -i \ + -e "/install_dir :=/cinstall_dir := $\(DESTDIR\)$(python_get_sitedir)/g4py" \ + "site-modules/${mfile}" || die "sed failed on site-modules/${mfile}" + done + + } + python_foreach_impl run_in_build_dir run_sed +} + +src_configure() { + run_configure() { + # not the autotools configure + ./configure ${ARG} \ + --prefix="${EPREFIX}/usr" \ + --with-g4install-dir="${EPREFIX}/usr" \ + --with-python-incdir="$(python_get_includedir)" \ + --with-python-libdir="${EPREFIX}/usr/$(get_libdir)" \ + --with-boost-incdir="${EPREFIX}/usr/include" \ + --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)" \ + --with-boost-python-lib="boost_python-${EPYTHON#python}" \ + --with-xercesc-incdir="${EPREFIX}/usr/include" \ + --with-xercesc-libdir="${EPREFIX}/usr/$(get_libdir)" \ + || die "configure failed" + } + python_foreach_impl run_in_build_dir run_configure +} + +src_compile() { + python_foreach_impl run_in_build_dir emake CPPVERBOSE=1 +} + +src_test() { + run_test() { + emake -C tests + } + python_foreach_impl run_in_build_dir run_test +} + +src_install() { + python_foreach_impl run_in_build_dir emake DESTDIR="${D}" install + dodoc README.md History + insinto /usr/share/doc/${PF} + use examples && doins -r examples +} diff --git a/sci-physics/geant-python/metadata.xml b/sci-physics/geant-python/metadata.xml new file mode 100644 index 000000000000..b6b36d34b7c5 --- /dev/null +++ b/sci-physics/geant-python/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + Python binding to Geant 4. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/geant/Manifest b/sci-physics/geant/Manifest new file mode 100644 index 000000000000..115d36671a2a --- /dev/null +++ b/sci-physics/geant/Manifest @@ -0,0 +1,25 @@ +AUX geant-4.10.0-TrackingNavigator.patch 2684 SHA256 dfcc663be808072f9b1a141d7f20f8979aa53d4249dd657db42f83e54b2bd34f SHA512 cc7f9ccc17ae83bec9aba945f01e2f6243264a19a6dd2226cc03bb09856a40521b6d1ded3acf2732f5fa3ca7f9822522ed695dbcbd157aadb29e7f6701f84146 WHIRLPOOL 1fe99eb065506f0bbe12c81213efef33b5a6140a638b054432647a3ec74eca917968ccecd08c16467702aaf90f934f07b3622462797c57f5f92c732d9a943650 +AUX geant-4.10.0-no-examples.patch 692 SHA256 3f2151ae9df66ee7b7bb36e0f519da1ea796de9bc6e6b31bf5047cb925164ed3 SHA512 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geant4.10.00/source/geometry/navigation/include/G4TransportationManager.hh geant4.10.00-mod/source/geometry/navigation/include/G4TransportationManager.hh +--- geant4.10.00/source/geometry/navigation/include/G4TransportationManager.hh 2013-12-05 10:28:54.000000000 +0100 ++++ geant4.10.00-mod/source/geometry/navigation/include/G4TransportationManager.hh 2013-12-12 01:40:12.341428809 +0100 +@@ -68,7 +68,7 @@ + // Accessors for field handling + + inline G4Navigator* GetNavigatorForTracking() const; +- inline void SetNavigatorForTracking( G4Navigator* newNavigator ); ++ void SetNavigatorForTracking( G4Navigator* newNavigator ); + // Accessors for the navigator for tracking + + inline void SetWorldForTracking(G4VPhysicalVolume* theWorld); +diff -Naur geant4.10.00/source/geometry/navigation/include/G4TransportationManager.icc geant4.10.00-mod/source/geometry/navigation/include/G4TransportationManager.icc +--- geant4.10.00/source/geometry/navigation/include/G4TransportationManager.icc 2013-12-05 10:28:54.000000000 +0100 ++++ geant4.10.00-mod/source/geometry/navigation/include/G4TransportationManager.icc 2013-12-12 01:40:12.341428809 +0100 +@@ -59,6 +59,7 @@ + fNavigators[0]->SetWorldVolume(theWorld); + } + ++/* + // ---------------------------------------------------------------------------- + // SetNavigatorForTracking() + // +@@ -70,6 +71,7 @@ + { + fNavigators[0] = newNavigator; + } ++*/ + + // ---------------------------------------------------------------------------- + // GetPropagatorInField() +diff -Naur geant4.10.00/source/geometry/navigation/src/G4TransportationManager.cc geant4.10.00-mod/source/geometry/navigation/src/G4TransportationManager.cc +--- geant4.10.00/source/geometry/navigation/src/G4TransportationManager.cc 2013-12-05 10:28:56.000000000 +0100 ++++ geant4.10.00-mod/source/geometry/navigation/src/G4TransportationManager.cc 2013-12-12 01:40:12.345428679 +0100 +@@ -124,6 +124,20 @@ + } + } + ++ ++// ---------------------------------------------------------------------------- ++// SetNavigatorForTracking() ++// ++// Set the active navigator for tracking, always ++// the first in the collection of registered navigators. ++// ++void G4TransportationManager::SetNavigatorForTracking(G4Navigator* newNavigator) ++{ ++ fNavigators[0] = newNavigator; ++ fActiveNavigators[0] = newNavigator; ++ fPropagatorInField->SetNavigatorForPropagating(newNavigator); ++} ++ + // ---------------------------------------------------------------------------- + // ClearNavigators() + // diff --git a/sci-physics/geant/files/geant-4.10.0-no-examples.patch b/sci-physics/geant/files/geant-4.10.0-no-examples.patch new file mode 100644 index 000000000000..99aaca546f49 --- /dev/null +++ b/sci-physics/geant/files/geant-4.10.0-no-examples.patch @@ -0,0 +1,22 @@ +do not install examples automatically, we do this explictly with dodoc. + +Index: geant4.10.00/CMakeLists.txt +=================================================================== +--- geant4.10.00.orig/CMakeLists.txt ++++ geant4.10.00/CMakeLists.txt +@@ -136,15 +136,6 @@ if(GEANT4_BUILD_EXAMPLES) + add_subdirectory(examples) + endif() + +-# - Install example code to datarootdir +-install(DIRECTORY examples +- DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/Geant4-${Geant4_VERSION} +- COMPONENT Examples +- PATTERN "CVS" EXCLUDE +- PATTERN ".svn" EXCLUDE +- ) +- +- + #----------------------------------------------------------------------------- + # Provide packaging with CPack. + include(Geant4CPackBase) diff --git a/sci-physics/geant/files/geant-4.10.02-std-isnan.patch b/sci-physics/geant/files/geant-4.10.02-std-isnan.patch new file mode 100644 index 000000000000..6d26a6c2c0d0 --- /dev/null +++ b/sci-physics/geant/files/geant-4.10.02-std-isnan.patch @@ -0,0 +1,17 @@ +Fully qualify isnan: +* /var/tmp/portage/sci-physics/geant-4.10.02/work/geant4.10.02/source/processes/hadronic/models/lend/src/nf_utilities.cc:61:22: error: ‘isnan’ was not declared in this scope +* return( isnan( d ) ); +See also: +https://bugs.gentoo.org/show_bug.cgi?id=581322 + +--- geant4.10.02/source/processes/hadronic/models/lend/src/nf_utilities.cc ++++ geant4.10.02/source/processes/hadronic/models/lend/src/nf_utilities.cc +@@ -58,7 +58,7 @@ + */ + int nfu_isNAN( double d ) { + +- return( isnan( d ) ); ++ return( std::isnan( d ) ); + } + /* + ************************************************************ diff --git a/sci-physics/geant/files/geant-4.10.2-no-examples.patch b/sci-physics/geant/files/geant-4.10.2-no-examples.patch new file mode 100644 index 000000000000..767547896c99 --- /dev/null +++ b/sci-physics/geant/files/geant-4.10.2-no-examples.patch @@ -0,0 +1,18 @@ +diff -ur geant4.10.02.orig/CMakeLists.txt geant4.10.02/CMakeLists.txt +--- geant4.10.02.orig/CMakeLists.txt 2016-01-13 15:00:07.009259839 -0200 ++++ geant4.10.02/CMakeLists.txt 2016-01-13 15:01:00.369257669 -0200 +@@ -134,14 +134,6 @@ + add_subdirectory(examples) + endif() + +-# - Install example code to datarootdir +-install(DIRECTORY examples +- DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/Geant4-${Geant4_VERSION} +- COMPONENT Examples +- PATTERN "CVS" EXCLUDE +- PATTERN ".svn" EXCLUDE +- ) +- + #----------------------------------------------------------------------- + # - CPack-aging + include(Geant4CPackBase) diff --git a/sci-physics/geant/files/geant-4.9.4-zlib.patch b/sci-physics/geant/files/geant-4.9.4-zlib.patch new file mode 100644 index 000000000000..f0429695ce38 --- /dev/null +++ b/sci-physics/geant/files/geant-4.9.4-zlib.patch @@ -0,0 +1,35 @@ +force use of system zlib instead of bundled G4zlib +--- source/visualization/HepRep/sources.cmake.orig 2011-12-02 15:07:49.000000000 +0000 ++++ source/visualization/HepRep/sources.cmake 2011-12-18 06:21:22.000000000 +0000 +@@ -91,7 +91,7 @@ + G4specsolids + G4tracking + G4vis_management +- G4zlib ++ ${ZLIB_LIBRARIES} + GLOBAL_DEPENDENCIES + G4digits_hits + G4geometry +@@ -102,7 +102,7 @@ + G4modeling + G4tracking + G4vis_management +- G4zlib ++ ${ZLIB_LIBRARIES} + LINK_LIBRARIES + ) + +--- source/visualization/externals/gl2ps/sources.cmake.orig 2011-12-02 16:07:56.000000000 +0100 ++++ source/visualization/externals/gl2ps/sources.cmake 2012-03-09 14:09:26.965148002 +0100 +@@ -49,9 +49,9 @@ + G4OpenGL2PSAction.cc + gl2ps.cc + GRANULAR_DEPENDENCIES +- G4zlib ++ ${ZLIB_LIBRARIES} + GLOBAL_DEPENDENCIES +- G4zlib ++ ${ZLIB_LIBRARIES} + LINK_LIBRARIES + ${OPENGL_LIBRARIES} + ) diff --git a/sci-physics/geant/geant-3.21.14-r4.ebuild b/sci-physics/geant/geant-3.21.14-r4.ebuild new file mode 100644 index 000000000000..ab132d31212e --- /dev/null +++ b/sci-physics/geant/geant-3.21.14-r4.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils fortran-2 + +DEB_PN=geant321 +DEB_PV=${PV}.dfsg +DEB_PR=11 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN's detector description and simulation Tool" +HOMEPAGE="https://wiki.gentoo.org/wiki/No_homepage" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="3" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + x11-libs/motif:0 + dev-lang/cfortran + sci-physics/cernlib + sci-physics/paw" +DEPEND="${RDEPEND} + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . || die + sed -i -e 's:/tmp/dp.*/cern:cern:g' debian/patches/* || die + cp debian/add-ons/Makefile . || die + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + sed -i \ + -e 's:/usr/local:${EROOT}usr:g' \ + Makefile || die "sed'ing the Makefile failed" + + einfo "Applying Debian patches" + emake -j1 patch + + # since we depend on cfortran, do not use the one from cernlib + rm -f src/include/cfortran/cfortran.h +} + +src_compile() { + # create local LaTeX cache directory + VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_test_() { + LD_LIBRARY_PATH="${S}"/shlib emake -j1 cernlib-test +} + +src_install() { + emake DESTDIR="${D}" install + cd debian + dodoc changelog README.* deadpool.txt NEWS copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/geant/geant-4.10.00.ebuild b/sci-physics/geant/geant-4.10.00.ebuild new file mode 100644 index 000000000000..f80eaa1049ae --- /dev/null +++ b/sci-physics/geant/geant-4.10.00.ebuild @@ -0,0 +1,88 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils eutils fortran-2 versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +SPV3=$(printf %1d ${PV3}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.1.3:2= + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND}" +PDEPEND=" + data? ( ~sci-physics/geant-data-${PV} ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${SPV3} )" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}"/${PN}-4.10.0-no-examples.patch + "${FILESDIR}"/${PN}-4.10.0-TrackingNavigator.patch # 496678 + ) + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DCMAKE_INSTALL_LIBDIR="${EROOT}usr/$(get_libdir)" + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + local mypv="${PV1}.${PV2}.${SPV3}" + doins ReleaseNotes/ReleaseNotes${mypv}.html + [[ -e ReleaseNotes/Patch${mypv}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${mypv}-*.txt + use examples && doins -r examples +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${SPV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/geant-4.10.00_p01.ebuild b/sci-physics/geant/geant-4.10.00_p01.ebuild new file mode 100644 index 000000000000..be593508de40 --- /dev/null +++ b/sci-physics/geant/geant-4.10.00_p01.ebuild @@ -0,0 +1,85 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils eutils fortran-2 versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +SPV3=$(printf %1d ${PV3}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib threads" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.1.3:2= + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND}" +PDEPEND=" + data? ( >=sci-physics/geant-data-4.10 ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${SPV3} )" + +S="${WORKDIR}/${MYP}" + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DCMAKE_INSTALL_LIBDIR="${EROOT}usr/$(get_libdir)" + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use threads GEANT4_BUILD_MULTITHREADED) + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + local mypv="${PV1}.${PV2}.${SPV3}" + doins ReleaseNotes/ReleaseNotes${mypv}.html + [[ -e ReleaseNotes/Patch${mypv}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${mypv}-*.txt + use examples && doins -r examples +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${SPV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/geant-4.10.01.ebuild b/sci-physics/geant/geant-4.10.01.ebuild new file mode 100644 index 000000000000..0c4ecd2f55cd --- /dev/null +++ b/sci-physics/geant/geant-4.10.01.ebuild @@ -0,0 +1,86 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils eutils fortran-2 versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +SPV3=$(printf %1d ${PV3}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib threads" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.1.3:2= + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND} prefix? ( app-shells/tcsh )" +PDEPEND=" + data? ( ~sci-physics/geant-data-${PV} ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${SPV3} )" + +S="${WORKDIR}/${MYP}" + +src_prepare() { + use examples || epatch "${FILESDIR}"/${PN}-4.10.0-no-examples.patch +} + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use threads GEANT4_BUILD_MULTITHREADED) + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + doins ReleaseNotes/ReleaseNotes${PV1}.${PV2}.${SPV3}.html + [[ -f ReleaseNotes/Patch${PV1}.${PV2}.${SPV3}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${mypv}-*.txt +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${SPV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/geant-4.10.01_p02.ebuild b/sci-physics/geant/geant-4.10.01_p02.ebuild new file mode 100644 index 000000000000..8ca4095cf7de --- /dev/null +++ b/sci-physics/geant/geant-4.10.01_p02.ebuild @@ -0,0 +1,87 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils eutils versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +SPV3=$(printf %1d ${PV3}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib threads" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.2:2= + <sci-physics/clhep-2.3:2= + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND} prefix? ( app-shells/tcsh )" +PDEPEND=" + data? ( ~sci-physics/geant-data-${PV1}.${PV2}.${PV3} ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${SPV3} )" + +S="${WORKDIR}/${MYP}" + +src_prepare() { + use examples || epatch "${FILESDIR}"/${PN}-4.10.0-no-examples.patch +} + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use threads GEANT4_BUILD_MULTITHREADED) + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + doins ReleaseNotes/ReleaseNotes${PV1}.${PV2}.${SPV3}.html + [[ -f ReleaseNotes/Patch${PV1}.${PV2}.${SPV3}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${PV1}.${PV2}.${SPV3}-*.txt +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${SPV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/geant-4.10.02.ebuild b/sci-physics/geant/geant-4.10.02.ebuild new file mode 100644 index 000000000000..540e9bbab354 --- /dev/null +++ b/sci-physics/geant/geant-4.10.02.ebuild @@ -0,0 +1,87 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils eutils versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +SPV3=$(printf %1d ${PV3}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib threads" + +RDEPEND=" + dev-libs/expat + =sci-physics/clhep-2.3.1.0:2= + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND} prefix? ( app-shells/tcsh )" +PDEPEND=" + data? ( ~sci-physics/geant-data-${PV1}.${PV2}.${PV3} ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${SPV3} )" + +S="${WORKDIR}/${MYP}" + +src_prepare() { + epatch -p1 "${FILESDIR}/${P}-std-isnan.patch" + use examples || epatch "${FILESDIR}"/${PN}-${PV1}.${PV2}.${SPV3}-no-examples.patch +} + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use threads GEANT4_BUILD_MULTITHREADED) + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + doins ReleaseNotes/ReleaseNotes${PV1}.${PV2}.${SPV3}.html + [[ -f ReleaseNotes/Patch${PV1}.${PV2}.${SPV3}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${PV1}.${PV2}.${SPV3}-*.txt +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${SPV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/geant-4.10.03.ebuild b/sci-physics/geant/geant-4.10.03.ebuild new file mode 100644 index 000000000000..ad7340f6f643 --- /dev/null +++ b/sci-physics/geant/geant-4.10.03.ebuild @@ -0,0 +1,93 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils versionator + +MY_P=${PN}${PV} +SPV="$(get_version_component_range 1 ${PV}).$(get_version_component_range 2 ${PV}).$(printf %1d $(get_version_component_range 3 ${PV}))" + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MY_P}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib threads" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.3.3.0:2= + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( + dev-qt/qtgui:4 + opengl? ( dev-qt/qtopengl:4 ) + ) + raytracerx? ( + x11-libs/libX11 + x11-libs/libXmu + ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND} prefix? ( app-shells/tcsh )" +PDEPEND=" + data? ( ~sci-physics/geant-data-${PV} ) + doc? ( ~app-doc/geant-docs-${PV} )" + +HTML_DOCS=( ReleaseNotes/ReleaseNotes${SPV}.html ) + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + cmake-utils_src_prepare + + if ! use examples; then + sed -i '/install(DIRECTORY examples/,/)/d' CMakeLists.txt || die + fi +} + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DGEANT4_INSTALL_DATA=OFF + -DUSE_GEANT4_BUILD_MULTITHREADED=$(usex threads) + -DUSE_GEANT4_USE_NETWORKDAWN=$(usex dawn) + -DUSE_GEANT4_USE_GDML=$(usex gdml) + -DUSE_GEANT4_USE_G3TOG4=$(usex geant3) + -DUSE_GEANT4_USE_XM=$(usex motif) + -DUSE_GEANT4_USE_OPENGL_X11=$(usex opengl) + -DUSE_GEANT4_USE_INVENTOR=$(usex inventor) + -DUSE_GEANT4_USE_QT=$(usex qt4) + -DUSE_GEANT4_USE_RAYTRACER_X11=$(usex raytracerx) + -DUSE_GEANT4_USE_NETWORKVRML=$(usex vrml) + -DUSE_GEANT4_USE_SYSTEM_ZLIB=$(usex zlib) + -DBUILD_STATIC_LIBS=$(usex static-libs) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + [[ -f ReleaseNotes/Patch${SPV}-1.txt ]] && DOCS+=( ReleaseNotes/Patch${SPV}-*.txt ) + einstalldocs +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/${PN^}${SPV}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/geant-4.9.6_p02-r1.ebuild b/sci-physics/geant/geant-4.9.6_p02-r1.ebuild new file mode 100644 index 000000000000..97b4abbe397c --- /dev/null +++ b/sci-physics/geant/geant-4.9.6_p02-r1.ebuild @@ -0,0 +1,85 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils eutils fortran-2 versionator multilib + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +MYP=${PN}$(replace_version_separator 3 .) + +DESCRIPTION="Toolkit for simulation of passage of particles through matter" +HOMEPAGE="http://geant4.cern.ch/" +SRC_URI="http://geant4.cern.ch/support/source/${MYP}.tar.gz" + +LICENSE="geant4" +SLOT="4" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+data dawn doc examples gdml geant3 inventor motif opengl + raytracerx qt4 static-libs vrml zlib" + +RDEPEND=" + dev-libs/expat + >=sci-physics/clhep-2.1.3 + dawn? ( media-gfx/dawn ) + gdml? ( dev-libs/xerces-c ) + motif? ( x11-libs/motif:0 ) + opengl? ( virtual/opengl ) + inventor? ( media-libs/SoXt ) + qt4? ( dev-qt/qtgui:4 opengl? ( dev-qt/qtopengl:4 ) ) + raytracerx? ( x11-libs/libX11 x11-libs/libXmu ) + zlib? ( sys-libs/zlib )" +DEPEND="${RDEPEND}" +PDEPEND=" + data? ( ~sci-physics/geant-data-${PV} ) + doc? ( ~app-doc/geant-docs-${PV1}.${PV2}.${PV3} )" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}"/${PN}-4.9.4-zlib.patch ) + +src_configure() { + local mycmakeargs=( + -DGEANT4_USE_SYSTEM_CLHEP=ON + -DCMAKE_INSTALL_LIBDIR="${EROOT}usr/$(get_libdir)" + -DGEANT4_INSTALL_DATA=OFF + $(cmake-utils_use dawn GEANT4_USE_NETWORKDAWN) + $(cmake-utils_use gdml GEANT4_USE_GDML) + $(cmake-utils_use geant3 GEANT4_USE_G3TOG4) + $(cmake-utils_use motif GEANT4_USE_XM) + $(cmake-utils_use opengl GEANT4_USE_OPENGL_X11) + $(cmake-utils_use inventor GEANT4_USE_INVENTOR) + $(cmake-utils_use qt4 GEANT4_USE_QT) + $(cmake-utils_use raytracerx GEANT4_USE_RAYTRACER_X11) + $(cmake-utils_use vrml GEANT4_USE_NETWORKVRML) + $(cmake-utils_use zlib GEANT4_USE_SYSTEM_ZLIB) + $(cmake-utils_use_build static-libs STATIC_LIBS) + ) + if use inventor; then + mycmakeargs+=( + -DINVENTOR_INCLUDE_DIR="$(coin-config --includedir)" + -DINVENTOR_SOXT_INCLUDE_DIR="$(coin-config --includedir)" + ) + fi + cmake-utils_src_configure +} + +src_install() { + # adjust clhep linking flags for system clhep + # binmake.gmk is only useful for legacy build systems + sed -i -e 's/-lG4clhep/-lCLHEP/' config/binmake.gmk || die + cmake-utils_src_install + insinto /usr/share/doc/${PF} + local mypv="${PV1}.${PV2}.${PV3}" + doins ReleaseNotes/ReleaseNotes${mypv}.html + [[ -e ReleaseNotes/Patch${mypv}-1.txt ]] && \ + dodoc ReleaseNotes/Patch${mypv}-*.txt + use examples && doins -r examples +} + +pkg_postinst() { + elog "The following scripts are provided for backward compatibility:" + elog "$(ls -1 ${EROOT%/}/usr/share/Geant4-${PV2}.${PV3}.*/geant4make/*sh)" +} diff --git a/sci-physics/geant/metadata.xml b/sci-physics/geant/metadata.xml new file mode 100644 index 000000000000..603011551974 --- /dev/null +++ b/sci-physics/geant/metadata.xml @@ -0,0 +1,27 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + Geant simulates the passage of subatomic particles through matter, for + instance, particle detectors. Geant 3 simulations are performed by + linking Fortran code supplied by the user with the Geant libraries, + then running the resulting executable. This package includes gxint, + the script used to perform this linking step. + Geant 4 is a complete rewrite in C++ with addition of other modern + features and detectors. +</longdescription> + <use> + <flag name="data">Add a lot of standard physics data files for geant4</flag> + <flag name="dawn">Add support for <pkg>media-gfx/dawn</pkg> (3D postscript + rendering)</flag> + <flag name="gdml">Enable geometry markup language for xml</flag> + <flag name="geant3">Add compatibility for geant321 to geant4</flag> + <flag name="inventor">Add support for Open Inventor SGI toolkit via Coin3D</flag> + <flag name="raytracerx">Enable raytracing for physics events</flag> + <flag name="vrml">Enable output of geant4 in vrml formats</flag> + </use> +</pkgmetadata> diff --git a/sci-physics/h2o-gtk/Manifest b/sci-physics/h2o-gtk/Manifest new file mode 100644 index 000000000000..74f127d62d54 --- /dev/null +++ b/sci-physics/h2o-gtk/Manifest @@ -0,0 +1,6 @@ +DIST h2o-gtk-0.1.tar.bz2 69851 SHA256 ad62d02b37aac565f6cc854e6dc3ed2e31ddc52ed458b4cd9b9c7b276546bb01 SHA512 58f376f53fc108be620d5a792227ee65e7464581c45b68e94d7bb19b90862f3b008b172d3a2f2376fee5f30fd19f6bb0f5ec74cb49f1224245f8c6ae68cc9b04 WHIRLPOOL 3fef2e32c8a622f1688b7cd4d4be5591117dff536c69d0201f40106c9c27ed9174e43931b0373787e93ab2ff220f0c31f4af09dca63a58c9415252c33c14b4f4 +EBUILD h2o-gtk-0.1.ebuild 558 SHA256 9264c1e04df0cb20c7ea471e9eb0b9dc6ca2f98b9424bc8d0034e2d74d3fd37b SHA512 c37b502b50ecf1e136ebcabed9ab1046892d771c664283301a5478eacf45cfd8b1a5f19a8e88a08a39d99443ee83142d179ba80951d9f419aa787c875f1f9194 WHIRLPOOL 757e4ab703b4cbc7f19035e548d8cac5af2a0186c3b6ff86b8085e9426a95910be1cf22b0219c806643083fcd58d701bb9d473431735fb3d96b679b391d25bba +EBUILD h2o-gtk-9999.ebuild 619 SHA256 5e1b3f228bad5d20e5f0b316b6e496292d46838029a06179c44dd6c85bc3c8e3 SHA512 bfc7e4ce0e5da1b86c5476a4ab410fa5bd0f02dddc142f6166c4141f4ed591aa41047ad4269ae78dc682e0b466d0ece5b0095ab7d69279fca9aee1d366b6bfda WHIRLPOOL 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0787cd0836cbaca79582c6a5277c9766913a1d1c783cc8194ca1fa5e2cabb4f40f4e1c590dc48451031ef2fab4b64a1aff8cf2906ada063b0cde1a05c6b719b0 WHIRLPOOL c5868ad64c412548e1fd59aca5e2373ace19cda2fcba26685aa00b36a15d51107007eee7a6ce79f349fb0faf6860fc4752d5ae1d53655cfe4d07ad86f81f3ca1 diff --git a/sci-physics/h2o-gtk/h2o-gtk-0.1.ebuild b/sci-physics/h2o-gtk/h2o-gtk-0.1.ebuild new file mode 100644 index 000000000000..58ab0a0cab1f --- /dev/null +++ b/sci-physics/h2o-gtk/h2o-gtk-0.1.ebuild @@ -0,0 +1,24 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 +inherit autotools-utils flag-o-matic + +DESCRIPTION="GTK+ UI for libh2o -- water & steam properties" +HOMEPAGE="https://bitbucket.org/mgorny/h2o-gtk/" +SRC_URI="https://www.bitbucket.org/mgorny/${PN}/downloads/${P}.tar.bz2" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="dev-cpp/gtkmm:2.4= + >=sci-libs/libh2oxx-0.2 + sci-libs/plotmm" +DEPEND="${RDEPEND}" + +src_prepare() { + autotools-utils_src_prepare + append-cxxflags -std=c++11 +} diff --git a/sci-physics/h2o-gtk/h2o-gtk-9999.ebuild b/sci-physics/h2o-gtk/h2o-gtk-9999.ebuild new file mode 100644 index 000000000000..6276dd849cb2 --- /dev/null +++ b/sci-physics/h2o-gtk/h2o-gtk-9999.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +#if LIVE +AUTOTOOLS_AUTORECONF=yes +EGIT_REPO_URI="https://bitbucket.org/mgorny/${PN}.git" + +inherit git-r3 +#endif + +inherit autotools-utils + +DESCRIPTION="GTK+ UI for libh2o -- water & steam properties" +HOMEPAGE="https://bitbucket.org/mgorny/h2o-gtk/" +SRC_URI="https://www.bitbucket.org/mgorny/${PN}/downloads/${P}.tar.bz2" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="dev-cpp/gtkmm:2.4= + sci-libs/libh2oxx:0= + sci-libs/plotmm:0=" +DEPEND="${RDEPEND}" + +#if LIVE +KEYWORDS= +SRC_URI= +#endif diff --git a/sci-physics/h2o-gtk/metadata.xml b/sci-physics/h2o-gtk/metadata.xml new file mode 100644 index 000000000000..00eb8a518fdf --- /dev/null +++ b/sci-physics/h2o-gtk/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mgorny@gentoo.org</email> + <name>MichaÅ‚ Górny</name> + </maintainer> + <upstream> + <maintainer status="active"> + <email>mgorny@gentoo.org</email> + <name>MichaÅ‚ Górny</name> + </maintainer> + <bugs-to>https://bitbucket.org/mgorny/h2o-gtk/issues/</bugs-to> + <remote-id type="bitbucket">mgorny/h2o-gtk</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/harminv/Manifest b/sci-physics/harminv/Manifest new file mode 100644 index 000000000000..84f3154ff3a4 --- /dev/null +++ b/sci-physics/harminv/Manifest @@ -0,0 +1,6 @@ +AUX harminv-1.3.1-configure.ac.patch 965 SHA256 a0bd665d97afb2e6d7d21bb55062cf25b89b0e2c65472f811957529ce14927a8 SHA512 c177dae71d23df73f09d1754edfcbb464970b6bb987c46f880d3eee288ab69a293b885b85414b519a32323e8c5f83f853d68339eaed2b8d4c5734c5e55a96691 WHIRLPOOL f86e6d0c90324d76bcf305c62ed368b4ee26ce7686886d9602655ecd05d211eb815abfa0d57453f4f72c2efb24daeea8e1d0db43d4b733b5808a8ede31c60021 +DIST harminv-1.3.1.tar.gz 327832 SHA256 245778c16390c22850de3fb716c3db19514d40415ee3693293bfe59c66536583 SHA512 7dc1c2f658d9722cd64558a702f04409d10b87cb4ff7247c2fbd7f8d9a24387fef1b8ba4b7b183727bef21891c32d27d83aaa3607d063f8ad60702be4bfe5c3c WHIRLPOOL 31e3e0c6a5a01431a2d6daf4fdab362576f2f72617e5d89ccb0f04cde147c59185697bfc40c35ca09168bc4a2281468e41b978b091f2445f6eea203cf8aa7a12 +EBUILD harminv-1.3.1-r1.ebuild 753 SHA256 a2e9de43dae5eb8c57822256f489667c4213f1cf96be9ae1248ed92ac8d714a1 SHA512 4eafc9b442d5463971bafcd57003073544117fa04510e42ed0e8d62032b072fee1e5d6d42c802596aed67371b66cc4647a7f814e2cde8c9334f0647e09d37729 WHIRLPOOL 9b6064d15b94821ba49daeb2012d92d40a05806ba0c8f379b79234bfebe3cadcf3c2da8cdea1e70f46b1e41d2261ecb68e22bcacc7516830b52f12f5aa21d676 +MISC ChangeLog 3028 SHA256 488ebf5671e0051d96ecc3d8f23004274cffb566d2e3bce961d113c5634a704e SHA512 dd7689767fe6cb2009fe072171558d81834465fc8f66e748c3ce30948f14755bb93d08dd1ef9e29d5e74b46eb6c24adafcae4f169c54ec136a9fb55162311e04 WHIRLPOOL d0331b6afa170444f69d62abe0db5d44b35cbf326b492b1554e7e1333e12d3e8b3520829fdbd0fa69320a2327295511cda4ef932a1f0fb67a612ff872c418dd6 +MISC ChangeLog-2015 1083 SHA256 bdbb6ffe83c66f2bd184a1a2279460702c7cbb31b5eed762e94d2ced544793db SHA512 4e982669866b8f4f17000fefeca99dc57c1c70e04e1da90e8a0ba7993ab6664f9ded2460653450027091c8412e6ba09a5df56bfcb2bf035bdca3a397f5298613 WHIRLPOOL df713dc8c34c65ad0eb306dbef33d69015cd6c8bd478b5fdcbf71b796e8e73a69d0c0589825a3edb0e573c616c513889f1d2c765f9d6f49bb6ec266071e19089 +MISC metadata.xml 632 SHA256 f20a4e89568ff29e1e341bd1b644429111659a4f0797a1b4e771c317987ea5c7 SHA512 ec47048cde692010d9b562d430992630d9107e65d401a7f429a2e0658c8edaab2f200b2d84c233fe6481330c0ded1ff6672fd3b7b9f75a5130129e3037b9da9d WHIRLPOOL fb3856384ae476629ccda644d0fc804169e32fe7ca06238c8c089a1ad47c612cd997a085dd3e994232d3adae4f2d770459a71549b41225fca587046363ba392d diff --git a/sci-physics/harminv/files/harminv-1.3.1-configure.ac.patch b/sci-physics/harminv/files/harminv-1.3.1-configure.ac.patch new file mode 100644 index 000000000000..508a8c177902 --- /dev/null +++ b/sci-physics/harminv/files/harminv-1.3.1-configure.ac.patch @@ -0,0 +1,31 @@ +--- a/configure.ac ++++ b/configure.ac +@@ -9,7 +9,7 @@ + # *not* the same as the "public" version number. CURRENT:REVISION:AGE + SHARED_VERSION_INFO="2:4:0" + AC_SUBST(SHARED_VERSION_INFO) +-AM_ENABLE_SHARED(no) dnl shared libs cause too many headaches to be default ++AM_ENABLE_SHARED(yes) dnl shared libs cause too many headaches to be default + + ############################################################################## + +@@ -123,9 +123,16 @@ + ########################################################################### + + # Checks for BLAS/LAPACK libraries: +- +-ACX_BLAS([], [AC_MSG_ERROR([BLAS library not found])]) +-ACX_LAPACK([], [AC_MSG_ERROR([LAPACK library not found])]) ++sinclude(acx_blas.m4) ++ACX_BLAS ++if test x"$BLAS_LIBS" = x ; then ++ AC_MSG_ERROR([BLAS library not found]) ++fi ++sinclude(acx_lapack.m4) ++ACX_LAPACK ++if test x"$LAPACK_LIBS" = x ; then ++ AC_MSG_ERROR([LAPACK library not found]) ++fi + + LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS" + diff --git a/sci-physics/harminv/harminv-1.3.1-r1.ebuild b/sci-physics/harminv/harminv-1.3.1-r1.ebuild new file mode 100644 index 000000000000..396cc6fe8440 --- /dev/null +++ b/sci-physics/harminv/harminv-1.3.1-r1.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools toolchain-funcs + +DESCRIPTION="Extraction of complex frequencies and amplitudes from time series" +HOMEPAGE="http://ab-initio.mit.edu/harminv/" +SRC_URI="http://ab-initio.mit.edu/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="static-libs" + +RDEPEND="virtual/lapack" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +PATCHES=( "${FILESDIR}"/${P}-configure.ac.patch ) + +src_prepare() { + default + eautoreconf +} + +src_configure() { + econf \ + $(use_enable static-libs static) \ + --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ + --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" +} diff --git a/sci-physics/harminv/metadata.xml b/sci-physics/harminv/metadata.xml new file mode 100644 index 000000000000..5ddaae490a92 --- /dev/null +++ b/sci-physics/harminv/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + Harminv is a program to solve the problem of harmonic inversion, + given a discrete-time, finite-length signal that consists of a sum of + finitely-many sinusoids (possibly exponentially decaying) in a given + bandwidth, it determines the frequencies, decay constants, amplitudes, + and phases of those sinusoids. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/hepmc/Manifest b/sci-physics/hepmc/Manifest new file mode 100644 index 000000000000..ac5c1ad95ed9 --- /dev/null +++ b/sci-physics/hepmc/Manifest @@ -0,0 +1,5 @@ +DIST HepMC-2.06.09.tar.gz 4612637 SHA256 c60724ca9740230825e06c0c36fb2ffe17ff1b1465e8656268a61dffe1611a08 SHA512 1030f31ad9d19d8ae184145a693c4a3092131f485e2ed89598b7172992a825ad9aa46fb44a9199a00c4a6bd7e163daead9452e9bc4fe32cb3b97351cf22906c4 WHIRLPOOL 62b91da92ec30bbc1f5619a87e6172fd563751fe29453ed5bdf31ecae6c5964b59a601b4a52f5c3249cfc20664041ee27bb7114d006dabdf05c5926194890370 +EBUILD hepmc-2.06.09-r1.ebuild 2008 SHA256 ab8e3996e4927e3b7b6ac7d2c4fc55d394519c51833cf184bbdf89db7ad9446f SHA512 45ae43d27f3a46c79feaed8f9071f45b9a63d6d22dc8f93c0f329f412eda80eb722db0cce12a441f6a94356bf69131c8508a72c9d90b8fc7bcc1abb37ff52b0a WHIRLPOOL 276f66ccb72364d52167fdf186f1d8a2eab3404650dc7ae5c1c9c53817a78216a88fb7e8d49c8f2b1dc8b1d93cb8547faf64f447710eb743794144f5b50dd482 +MISC ChangeLog 3586 SHA256 1c634047c1bde1e526fb7ba5f9a2a87bcf3567dea5bc66afb442a47f3003c862 SHA512 7c8e331067647437ecc9f278c1d1d63e0538fd70b80f360c9cdfc97c1687e7b393d85440814aaed9f322c5071e3f1e3f2cbcb8ed67c805bcd136a35f4cf77045 WHIRLPOOL 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000000000000..20b3409bd416 --- /dev/null +++ b/sci-physics/hepmc/hepmc-2.06.09-r1.ebuild @@ -0,0 +1,92 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils + +MYP=HepMC-${PV} + +DESCRIPTION="Event Record for Monte Carlo Generators" +HOMEPAGE="http://lcgapp.cern.ch/project/simu/HepMC/" +SRC_URI="http://lcgapp.cern.ch/project/simu/HepMC/download/${MYP}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="cm doc examples gev static-libs test" + +RDEPEND="" +DEPEND="${RDEPEND} + doc? ( + app-doc/doxygen + || ( + dev-texlive/texlive-latex + dev-tex/floatflt + ) + )" + +S="${WORKDIR}/${MYP}" + +DOCS=( ChangeLog AUTHORS ) + +src_prepare() { + sed -i -e '/add_subdirectory(doc)/d' CMakeLists.txt + # CMake doc building broken + # gentoo doc directory + #sed -i \ + # -e "s:share/HepMC/doc:share/doc/${PF}:" \ + # doc/CMakeLists.txt || die + + # gentoo examples directory + sed -i \ + -e "s:share/HepMC:share/doc/${PF}:" \ + $(find examples -name CMakeLists.txt) || die + + # respect user's flags + sed -i \ + -e "s/-O -ansi -pedantic -Wall//g" \ + cmake/Modules/HepMCVariables.cmake || die + + # gentoo libdir love + sed -i \ + -e '/DESTINATION/s/lib/lib${LIB_SUFFIX}/g' \ + {src,fio}/CMakeLists.txt || die + + # remove targets if use flags not set + use examples || sed -i -e '/add_subdirectory(examples)/d' CMakeLists.txt + use test || sed -i -e '/add_subdirectory(test)/d' CMakeLists.txt + if ! use static-libs; then + sed -i \ + -e '/(HepMC\(fio\|\)S/d' \ + -e '/TARGETS/s/HepMC\(fio\|\)S//' \ + {src,fio}/CMakeLists.txt || die + fi +} + +src_configure() { + # use MeV over GeV and mm over cm + local length_conf="MM" + use cm && length_conf="CM" + local momentum_conf="MEV" + use gev && momentum_conf="GEV" + mycmakeargs+=( + -Dlength=${length_conf} + -Dmomentum=${momentum_conf} + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile + if use doc; then + cd doc + ./buildDoc.sh || die + ./buildDoxygen.sh || die + fi +} + +src_install() { + cmake-utils_src_install + use doc && dodoc doc/*.pdf && dohtml -r doc/html/* +} diff --git a/sci-physics/hepmc/metadata.xml b/sci-physics/hepmc/metadata.xml new file mode 100644 index 000000000000..b89c291af1b6 --- /dev/null +++ b/sci-physics/hepmc/metadata.xml @@ -0,0 +1,28 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + The HepMC package is an object oriented event record written in C++ + for High Energy Physics Monte Carlo Generators. Many extensions from + HEPEVT, the Fortran HEP standard, are supported: the number of entries + is unlimited, spin density matrices can be stored with each vertex, + flow patterns (such as color) can be stored and traced, integers + representing random number generator states can be stored, and an + arbitrary number of event weights can be included. Particles and + vertices are kept separate in a graph structure, physically similar to + a physics event. The added information supports the modularisation of + event generators. The package has been kept as simple as possible with + minimal internal/external dependencies. Event information is accessed + by means of iterators supplied with the package. + + Reference: M. Dobbs and J.B. Hansen, Comput. Phys. Commun. 134 (2001)41. +</longdescription> +<use> + <flag name="gev">Build with GeV instead of default MeV for momentum units</flag> + <flag name="cm">Build with cm instead of default mm for length units</flag> +</use> +</pkgmetadata> diff --git a/sci-physics/heppdt/Manifest b/sci-physics/heppdt/Manifest new file mode 100644 index 000000000000..90a94549cec0 --- /dev/null +++ b/sci-physics/heppdt/Manifest @@ -0,0 +1,5 @@ +DIST HepPDT-3.04.01.tar.gz 1851879 SHA256 2c1c39eb91295d3ded69e0d3f1a38b1cb55bc3f0cde37b725ffd5d722f63c0f6 SHA512 33a93b7d18c0cc64ab13923eb5edca89ed753a7f888a31c1d6a5f84f735e4042e2eaaf04e221d487976603a40fbd84cede4b4dd2bcd2e7479d97cc637dda637b WHIRLPOOL 211e9e8839e508f9929d9f69d9d1d67e633067f5957e5f59f44db6a261d3b515b7d0d9aaf49a9648ee38106ba9b9ea91abdc24820798e678eb79c640456c92ba +EBUILD heppdt-3.04.01-r1.ebuild 1177 SHA256 7ebca96006ba628a52b2b52608f4a793c2300426bfe58736a4eb1e2f8b9f83ca SHA512 f273e3e200b4f44711947ef943c91badc1da00662c19bf7e55adafe1e1648c934c9a80547179fbd0da8c8f2fb925c9782614ddcd4f1a58ca3c2dc85ca2d9269b WHIRLPOOL 332cdff5a0825f415217f846d705dfe30d3a7e5ee907d8a51cd88ec7bbd8dc3abbc0951b5d0882c88c3357a489e8288209b1d438e3f25bfd3d43ba3e7dd5c19e +MISC ChangeLog 2951 SHA256 3348f5e1192cbb16a6a35c1c01732161ae67b62ee2cc3123ddc9115786531951 SHA512 3a2821e8de9443ce8b0c74123367bef0f22a16e14b0601f9ed47fb068a8d83603bf26a7c08f120f66fd847fd33bcf82ea8d3bff3b0e31ea415fd1c4fd0556f2e WHIRLPOOL 4a61a1878ade8383ecd349ba3ea6471c9edbdf7d7300f2c6097ff71355116e8217cb34943dec2063c20a06a3109d541b8850e0ec924732f90088193fc16edad2 +MISC ChangeLog-2015 741 SHA256 89bb86418a732729e732f2a0d452e788732a671ba350790dbdb31a16f86a8006 SHA512 a80774ad9f02350201a8ade6a5c27ea75ffc7c991de4b119f5163f1e591933e12da1b6165aa6113860733407732d65c40b226afde2eb1581819ac145077c0193 WHIRLPOOL f3113a2d4eba38260f876f8b1cc0173e4f179980f7626e9a2ae5d6b237b02b1d3ff8c204d0f559f25cdfe5c1d7e0a6a66a7246ca3e2ea2f7f1290570677d4c9a +MISC metadata.xml 723 SHA256 5b5af3fc7925e5f1c97ddf55ec2162405f5e6d75f40e9eb2ee3114a71aee1dad SHA512 3dc66e18e8d7df29f7b298e4e9e2e3f3944194cd48062f15250fd174c08cc8a812c9656bcfec02435a6d78056da6b6522527f1f5a951fd41a12c5a2f701919d5 WHIRLPOOL 29824b04875e33a408415fb339ea3e602082aac66beac90ae7960848ce8a476326bc35fbf4f7ba994887c7ff27a8bbbc92ab8eea63b7e0977be3aa35665f2103 diff --git a/sci-physics/heppdt/heppdt-3.04.01-r1.ebuild b/sci-physics/heppdt/heppdt-3.04.01-r1.ebuild new file mode 100644 index 000000000000..e5ec556641c7 --- /dev/null +++ b/sci-physics/heppdt/heppdt-3.04.01-r1.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools + +MY_P=HepPDT-${PV} + +DESCRIPTION="Data about each particle from the Review of Particle Properties" +HOMEPAGE="http://lcgapp.cern.ch/project/simu/HepPDT/" +SRC_URI="${HOMEPAGE}/download/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples static-libs" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + default + # respect user flags + sed -i \ + -e '/AC_SUBST(AM_CXXFLAGS)/d' \ + configure.ac || die + # directories + sed -i \ + -e 's:$(prefix)/data:$(datadir)/${PN}:g' \ + data/Makefile.am || die + eautoreconf +} + +src_configure() { + econf $(use_enable static-libs static) +} + +src_test() { + LD_LIBRARY_PATH="${S}/src/HepPDT:${S}/src/HepPID" \ + emake check MY_LD=-L SHEXT=so +} + +src_install() { + default + + if use doc; then + mv "${ED%/}"/usr/doc/* "${ED%/}"/usr/share/doc/${PF}/ || die + fi + if use examples; then + mv "${ED%/}"/usr/examples "${ED%/}"/usr/share/doc/${PF}/ || die + docompress -x /usr/share/doc/${PF}/examples + fi + rm -rf "${ED%/}"/usr/{doc,examples} || die +} diff --git a/sci-physics/heppdt/metadata.xml b/sci-physics/heppdt/metadata.xml new file mode 100644 index 000000000000..f34cc770d951 --- /dev/null +++ b/sci-physics/heppdt/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + HepPDT contains the fixed data about each particle type. In other + words, it contains the data that can be found in the Review of + Particle Properties. + This data is conceptually split into particle information (e.g. mass) + and decay information. HepPDT provides a simple set of particle data + classes. Particle ID translation methods are in a separate HepPID + library, which is distributed as part of HepPDT. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/herwig++/Manifest b/sci-physics/herwig++/Manifest new file mode 100644 index 000000000000..173717796766 --- /dev/null +++ b/sci-physics/herwig++/Manifest @@ -0,0 +1,5 @@ +AUX herwig++-2.6.3-looptools.patch 3187 SHA256 349a59a11546027d2924d6bb28340d7d5b5c74823dc69507fa3a7fe3cff12444 SHA512 22a39b340a12fc7060bbd26700be836b1a9833a9b43f93ddfef6659ee0517fc6804e455dd39cd26b8d3ff41c125acca34ea0e72bfa45958885c347e38078aaab WHIRLPOOL 36fabf7d6291e7bc6efd62e88fd0a696c2811f41c3551bef562ab6c3d6e7de0813f451cf715f9caf52c413c2dc9374e10e239cb146a3bacd5cd33dc2772d2657 +DIST Herwig++-2.7.1.tar.bz2 3388956 SHA256 80a189376bb65f5ec4e64f42e76c00ea9102d8224010563a424fc11e619a6ad6 SHA512 643f389f13f22b30d0adb4ca601a11c2686f6db4746af51136601954af2ec20eb0af7b45981e764d8b71cb7206bfe310beea1fee069972868955b1f024b8d5e3 WHIRLPOOL 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72d27384af741c0508a9fa5df44c76c0bc34f0affbcbdd76e5b46b84ecb08db80bf6c8735d45df180728a13d68cef8cc97aa22e6b12b9bb946cec5036c30afc4 WHIRLPOOL 3845d4e3b126531d65b7c3f5ca90858877b24ce91b225d043524f8b0bf9287c77da5bccec2b48f1ba9028cfa0c99df2e6b7f34c88d922273c3ee72d9601ccfa1 diff --git a/sci-physics/herwig++/files/herwig++-2.6.3-looptools.patch b/sci-physics/herwig++/files/herwig++-2.6.3-looptools.patch new file mode 100644 index 000000000000..0c802977db6a --- /dev/null +++ b/sci-physics/herwig++/files/herwig++-2.6.3-looptools.patch @@ -0,0 +1,64 @@ +--- Looptools/Makefile.am ++++ Looptools/Makefile.am +@@ -1,58 +1,12 @@ +-noinst_LTLIBRARIES = libHwLooptoolsXFC.la libHwLooptoolsCFC.la +-noinst_LTLIBRARIES += libHwLooptools.la +- +-EXTRA_DIST = include/lt.h include/ftypes.h include/ff.h include/ffwarn.h \ +- include/fferr.h include/defs.h include/looptools.h include/ffperm5.h \ +- include/clooptools.h include/cexternals.h include/externals.h \ +- util/solve-LU.F util/solve-LU.h util/solve-Eigen.F +- +-theXFCSOURCES = \ +-A/A0.F A/A00.F A/ffxa0.F A/ffca0.F B/Bget.F \ +-B/Bcoeff.F B/BcoeffC.F B/Bcoeffa.F B/Bcoeffb.F B/ffxb0.F \ +-B/ffcb0.F B/ffxb1.F B/ffcb1.F B/ffxb2p.F B/ffcb2p.F \ +-B/ffxdb0.F B/ffcdb0.F B/ffxdb1.F B/ffdel2.F B/ffcel2.F \ +-C/C0.F C/C0C.F C/Cget.F C/ffxc0.F C/ffcc0.F \ +-C/ffxc0i.F C/ffxc0p.F C/ffxc0p0.F C/ffcc0p.F C/ffdxc0.F \ +-C/ffdel3.F C/ffcel3.F D/D0.F D/D0C.F D/Dget.F \ +-D/ffxd0.F D/ffxd0h.F D/ffxd0i.F D/ffxd0p.F D/ffxd0m0.F \ +-D/ffxd0tra.F D/ffxdbd.F D/ffdcc0.F D/ffdel4.F D/ffd0c.F \ +-D/ffTn.F D/ffT13.F D/ffS2.F D/ffS3n.F D/ffRn.F \ +-E/E0.F E/Eget.F E/Ecoeffa.F E/Ecoeffb.F E/ffxe0.F \ +-E/ffdel5.F util/ini.F util/auxCD.F util/solve.F util/Dump.F \ +-util/Li2.F util/ffinit.F util/ffxli2.F util/ffcli2.F util/ffxxyz.F \ +-util/ffcxyz.F util/ffcrr.F util/ffcxr.F util/fftran.F util/ffabcd.F \ +-util/ff2dl2.F util/ffcxs3.F util/ffcxs4.F util/ffdcxs.F util/ffbndc.F +- +-## the following need -DCOMPLEXPARA +-theCFCSOURCES = \ +-A/A0.F A/A00.F B/Bget.F B/Bcoeffa.F C/Cget.F D/Dget.F E/E0.F \ +-E/Eget.F E/Ecoeffa.F E/Ecoeffb.F util/solve.F util/Dump.F util/Li2.F ++noinst_LTLIBRARIES = libHwLooptools.la + + commonCPPFLAGS = $(AM_CPPFLAGS) -I$(srcdir)/include + +-libHwLooptoolsXFC_la_SOURCES = $(theXFCSOURCES) +-libHwLooptoolsXFC_la_CPPFLAGS = $(commonCPPFLAGS) +-libHwLooptoolsXFC_la_FCFLAGS = $(AM_FCFLAGS) -ffixed-line-length-none +-libHwLooptoolsXFC_la_FFLAGS = $(AM_FFLAGS) -ffixed-line-length-none +- +-libHwLooptoolsCFC_la_SOURCES = $(theCFCSOURCES) +-libHwLooptoolsCFC_la_CPPFLAGS = $(commonCPPFLAGS) -DCOMPLEXPARA +-libHwLooptoolsCFC_la_FCFLAGS = $(AM_FCFLAGS) -ffixed-line-length-none +-libHwLooptoolsCFC_la_FFLAGS = $(AM_FFLAGS) -ffixed-line-length-none +- +-## installed already from "include/Makefile.am" +-## noinst_HEADERS = include/clooptools.h +- +-##if NEED_APPLE_FIXES +-##libHwLooptoolsXFC_la_LDFLAGS = -Wl,-single_module +-##libHwLooptoolsCFC_la_LDFLAGS = -Wl,-single_module +-##endif +- +-libHwLooptools_la_SOURCES = util/cache.c clooptools.cc ++libHwLooptools_la_SOURCES = clooptools.cc + libHwLooptools_la_CXXFLAGS = $(AM_CXXFLAGS) -Wno-strict-aliasing + libHwLooptools_la_CPPFLAGS = $(commonCPPFLAGS) + libHwLooptools_la_CFLAGS = $(AM_CFLAGS) -std=c99 +-libHwLooptools_la_LIBADD = libHwLooptoolsXFC.la libHwLooptoolsCFC.la ++libHwLooptools_la_LIBADD = -looptools + + + ## libHwLooptoolsHelper2_la_SOURCES = clooptools.cc diff --git a/sci-physics/herwig++/herwig++-2.7.1-r1.ebuild b/sci-physics/herwig++/herwig++-2.7.1-r1.ebuild new file mode 100644 index 000000000000..cb49eebe72f9 --- /dev/null +++ b/sci-physics/herwig++/herwig++-2.7.1-r1.ebuild @@ -0,0 +1,60 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_AUTORECONF=1 +AUTOTOOLS_IN_SOURCE_BUILD=1 + +inherit autotools-utils eutils flag-o-matic multilib + +MYP=Herwig++-${PV} + +DESCRIPTION="High-Energy Physics event generator" +HOMEPAGE="http://herwig.hepforge.org/" +SRC_URI="http://www.hepforge.org/archive/herwig/${MYP}.tar.bz2" + +SLOT="0/15" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="c++11 fastjet static-libs" + +# >sci-physics/looptools-2.8 leads to misoperation +# and failing tests (it lacks some symbols) +RDEPEND=" + dev-libs/boost:0= + sci-libs/gsl:0= + <=sci-physics/looptools-2.8:0= + ~sci-physics/thepeg-1.9.2:0= + fastjet? ( sci-physics/fastjet:0= )" +DEPEND="${RDEPEND} + >=sys-devel/boost-m4-0.4_p20160328" + +S="${WORKDIR}/${MYP}" + +src_prepare() { + epatch "${FILESDIR}"/${PN}-2.6.3-looptools.patch + # fixes bug 570458, which is due to an outdated bundled boost.m4 + rm m4/boost.m4 || die + find -name 'Makefile.am' -exec \ + sed -i -e '1ipkgdatadir=$(datadir)/herwig++' {} \; || die + autotools-utils_src_prepare +} + +src_configure() { + use prefix && \ + append-ldflags -Wl,-rpath,"${EPREFIX}"/usr/$(get_libdir)/ThePEG + local myeconfargs=( + --with-boost="${EPREFIX}"/usr + --with-thepeg="${EPREFIX}"/usr + $(use_enable c++11 stdcxx11) + $(use_with fastjet fastjet "${EPREFIX}"/usr) + ) + autotools-utils_src_configure +} + +src_install() { + autotools-utils_src_install + sed -i -e "s|${ED}||g" "${ED}"/usr/share/herwig++/defaults/PDF.in || die + sed -i -e "s|${ED}||g" "${ED}"/usr/share/herwig++/HerwigDefaults.rpo || die +} diff --git a/sci-physics/herwig++/metadata.xml b/sci-physics/herwig++/metadata.xml new file mode 100644 index 000000000000..23f7c30990f2 --- /dev/null +++ b/sci-physics/herwig++/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription> + Herwig++ is a completely new event generator, written in C++. + It is built on the experience gained with the well-known + event generator HERWIG. The aim is to provide a multi purpose + event generator with similar or improved capabilities (like angular + ordered parton evolution and the cluster hadronization model). +</longdescription> + <use> + <flag name="c++11">Build Herwig++ using the C++11 standard. + Experimental feature, not for production use.</flag> + <flag name="fastjet">Adds support for <pkg>sci-physics/fastjet</pkg></flag> + </use> +</pkgmetadata> diff --git a/sci-physics/herwig/Manifest b/sci-physics/herwig/Manifest new file mode 100644 index 000000000000..81f4b14bfdbd --- /dev/null +++ b/sci-physics/herwig/Manifest @@ -0,0 +1,8 @@ +DIST HERWIG65.INC 32 SHA256 637f8e4c1bd76ec0fd96acc61120d2a41b6b8ca53884a1db30e7f1e35cf52fa4 SHA512 fe63b262458a0e2e9aa5bb76efa2980714e8af96fbd9e226fa33dfda3111e45e6ec033a4c9d21ca339e2336dea3e0f723aa3cff29c4fbbc871a30a9a5690c888 WHIRLPOOL c7459023e7e21a46b7e4bc846f1b6ec3f1358f2efded20411b08c714a98e338c5ad0f2d90b00f4e53967b07a65397d51a562d8334f943efb698d6114469be706 +DIST herwig6521.f 2513511 SHA256 6e47079ee19e5cdc538aa7eae6cd6102ce783bfa501f6356eb34349af33954c0 SHA512 c13bc74132ddb86ca0fea61bc2da21dc6908b96d14a33c378c0f37be0dce201012fdd11681e11fcfb715b345ccd72fb4d166017eaf4e0cd19762acbe6687809a WHIRLPOOL 8baf5931614424d8ce873c31d5d494523fa1e8a783fbbc23ea99035cf5ac5f8be7026436991e078ae8b7334e55a9716da86c10aefce8995f6ea34a03c795b715 +DIST herwig6521.inc 15224 SHA256 f75e4cef481a97f73aa0710789fb3e2bd9b8b4ee26850bf7ecdc8ca6e058476c SHA512 8254dc7a99445a7f4a61760fd8bd4ede5f8b7613e25a9c51155ae614c9cb888c7a66043b3b2ec96b8f515351dab0f697dc14738bcde58fdb345f3aebdac6f1fa WHIRLPOOL a5c45472e2350a2fd3459156c7fc77498624e29807d0008b0393eff3a6c027ff4bdc7d1df1cfc3ccf9c70a8a710e94e208638da10ec8a320470581f5ce67a695 +DIST hw65_manual.pdf 934022 SHA256 a857263bc5ee6ead2c7414ffd9a64d04ab40b6c846399c23001ac8b5211b1ac6 SHA512 68c4407e27abe2d34e239455bd94324d919b712cc8b031faa4635caf4e3eb6ff30d35b4e7f8dc9146c8f54886ff77cc690b296b15805dcd9302ef93e707915ff WHIRLPOOL f51dcb8c7d84d872110ba4e9e698284ab36f8a17f3c2de1578b0ecb3127c3f2481d2c005e623267cdea6785a4f78d4a4dbba938fabbaedea2fc94139da155687 +EBUILD herwig-6.5.21-r1.ebuild 1481 SHA256 4df3ec6a1fa95b3aebbfb8a4d0bf1ee97853eb5116b0a1a82648e812f6e86a68 SHA512 97660efb382fb935bf69ce57618450fc21f2f91a789ed63c0a99e284728a9f2144b0a43e23dc4959416a965a7f39eae0052bea9a18fbb5744a541b3d22ba8fed WHIRLPOOL eb7cf7fd2b9b61946ba23abcf55814b07859e91f44f27722d213bae102bbd7aa9635fdf5b5ca3eba82155c13e0f68bbad64af2190474f7f1d4d5a7de52e0198e +MISC ChangeLog 3098 SHA256 584cbcc26971e1557ef83040189b34dd4b8b90df0c9953e1fd81f198455dc2f5 SHA512 b65de6cad61371a9410546cb300a23418d25f977a4d4ff47b2f24e767e205f7c495e5de08e77af1d0138d6cbfe2d3512e1873f950a8e934ce90fdb4075a8fc07 WHIRLPOOL 9dab6262c2951b88d0bc06001b62705b9e55385694c0ac36fec45ab79d83d9d91630a3728e462b7fcb0127f6323f03cea7c5df991001ce3ecab67e50dd0d7cb1 +MISC ChangeLog-2015 1519 SHA256 204aaf44892911ea2b034bcd320ffb007e4d83a99ee41a95d4b9b293b061aacd SHA512 8bb850a6ad608b407481a41cc905fb8dfbf0cec86407a7072947dc2056d2e2721d2075ab7822446008fba4e8e673999506ae0cf1b7cccd5a3fa0384b77980d2c WHIRLPOOL 0538012650a1c2047cd12b27b618bcbeebf805bbe87211133e9843f9a040da38a826c82fc5e2e99a17df2cf20bf1090d9e6c276d9c1f35ac95303ed0989e7583 +MISC metadata.xml 418 SHA256 a1f0ad6b5560900abf3e938c294a6abfd9a08c3ca103c436402461baa89c3c06 SHA512 c2b4efe94ff3a63d31898075af8404727ac739aa29e511bbd527ed416e2cad165c765acaab48d8e777c57a5dbbeb9d98cb5a3fb8ba2c86e342089ade0aa62b48 WHIRLPOOL 001e7d6ad0255172ca2369f68c7fdb123a9029554acf97f2ff7f16f41a38a1de5c03af6763488ba9ff5134826995b8b38dd29e269719ace86407d5c880e1f244 diff --git a/sci-physics/herwig/herwig-6.5.21-r1.ebuild b/sci-physics/herwig/herwig-6.5.21-r1.ebuild new file mode 100644 index 000000000000..61e03705a4cc --- /dev/null +++ b/sci-physics/herwig/herwig-6.5.21-r1.ebuild @@ -0,0 +1,70 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools eutils fortran-2 versionator + +PV1=$(get_version_component_range 1 ${PV}) +PV2=$(get_version_component_range 2 ${PV}) +PV3=$(get_version_component_range 3 ${PV}) +MY_P=${PN}${PV1}${PV2}${PV3} +MY_PINC="${PN^^}${PV1}${PV2}.INC" + +DESCRIPTION="High Energy Physics Event Generator" +HOMEPAGE="http://www.hep.phy.cam.ac.uk/theory/webber/Herwig/" +SRC_URI=" + ${HOMEPAGE}/${MY_P}.f + ${HOMEPAGE}/${MY_P}.inc + ${HOMEPAGE}/${MY_PINC} + doc? ( ${HOMEPAGE}/hw65_manual.pdf )" + +LICENSE="all-rights-reserved" +RESTRICT="mirror bindist" + +SLOT="0" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="doc static-libs" + +RDEPEND="!sci-physics/cernlib-montecarlo[herwig]" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack() { + cp "${DISTDIR}"/{"${MY_P}".f,"${MY_P}".inc,"${MY_PINC}"} "${S}" || die +} + +src_prepare() { + sed -i \ + -e "s/${PN}.*.inc/${MY_P}.inc/" \ + ${MY_PINC} || die + cat > configure.ac <<-EOF || die + AC_INIT(${PN},${PV}) + AM_INIT_AUTOMAKE + AC_PROG_F77 + AC_PROG_LIBTOOL + AC_CONFIG_FILES(Makefile) + AC_OUTPUT + EOF + cat > Makefile.am <<-EOF || die + lib_LTLIBRARIES = lib${PN}.la + lib${PN}_la_SOURCES = ${MY_P}.f + include_HEADERS = \ + ${MY_PINC} \ + ${MY_P}.inc + + EOF + eapply_user + eautoreconf +} + +src_configure() { + econf $(use_enable static-libs static) +} + +src_install() { + default + prune_libtool_files + use doc && dodoc "${DISTDIR}"/hw65_manual.pdf +} diff --git a/sci-physics/herwig/metadata.xml b/sci-physics/herwig/metadata.xml new file mode 100644 index 000000000000..b750bf0bcc39 --- /dev/null +++ b/sci-physics/herwig/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + HERWIG is a Monte Carlo package for simulating Hadron Emission + Reactions With Interfering Gluons. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/hoomd-blue/Manifest b/sci-physics/hoomd-blue/Manifest new file mode 100644 index 000000000000..7f9c3eb24752 --- /dev/null +++ b/sci-physics/hoomd-blue/Manifest @@ -0,0 +1,7 @@ +DIST hoomd-blue-2.0.2.tar.bz2 2942198 SHA256 6ed0b7c28d4490a00081630fe9afd831a862cb895636679b89e2fb0a11637861 SHA512 6480639bc1b8d0534c220c7512f742a6f9eba76ad25991153735cc7f4ff88345332be4c215abd94de85249e79e85a6970be1a74a96350d4693a2c1291fbbf689 WHIRLPOOL e0a9e23a1a5aa8348496400140e4e288a3b79c5bd7f3c09675d592aebd02a781d4ef6cc9e5fe7ac9f671e1ff791ea75d70d3fa25189ade78d9229dfae6e9a21a +DIST libgetar-0.5.0.tar.bz2 217067 SHA256 8b03a352f63dcf8d14e88af758f65f71e5e4f92ed01c1566c3333da90164ab42 SHA512 a27de8f7c976e5578142319684de15afca47c24953f590b34cad4ef88c3778aa47aa5eb9a1f83b1473aa49f4394e45dfaa4a8b5107264fa93101dea78ec5fa6b WHIRLPOOL d5dbb0bc51bdc7241ba4c51461da0a54eb57b0e9f76e1f0a7127010ccbd375146b4aae0bfd98a431f96595459913168097502edc9d7fe60f3180ca56fb44e91a +EBUILD hoomd-blue-2.0.2.ebuild 1678 SHA256 328463b5c154437750b44f44206f49e978b9d0ad9daf2a190c2fa6adcf87835d SHA512 3661ed6fb5c847ce42471540cc6052f2703df6b560313c8b40882ed3a25f460d64edb279ae191c23004fa1fba479f1b8d95ef7c96e86e85c891d19dc32587079 WHIRLPOOL 7f1cbc3df827339af362a9f8319999049fa0b279cb7caa39a2bddafc7970ab65780c0f58f146ce4a306dbb99ee681256d8f183627d90879c133c6feff1419ea3 +EBUILD hoomd-blue-9999.ebuild 1678 SHA256 328463b5c154437750b44f44206f49e978b9d0ad9daf2a190c2fa6adcf87835d SHA512 3661ed6fb5c847ce42471540cc6052f2703df6b560313c8b40882ed3a25f460d64edb279ae191c23004fa1fba479f1b8d95ef7c96e86e85c891d19dc32587079 WHIRLPOOL 7f1cbc3df827339af362a9f8319999049fa0b279cb7caa39a2bddafc7970ab65780c0f58f146ce4a306dbb99ee681256d8f183627d90879c133c6feff1419ea3 +MISC ChangeLog 4519 SHA256 2bc26c0a4890c4cc74d9387e406e7a0a62bcc6683e368745d666641eec7da55c SHA512 115a23e18be3c753509d0f855edde2f3cd0d96c031785cc26e820f3fcd0241fd3be0658ca9796f8c6eab64a3a420ad99a51ab0687016e87d847872ab3b3103eb WHIRLPOOL 0aae697211ac3a8c64cdbf65799e5e34b6c2251570dd3f48c9faef0b2fbd111b137722810615d85fe597c59c103607865c18459e7905d00d87a40071b44080c0 +MISC ChangeLog-2015 364 SHA256 0d4218b64abe236703393d57798a608c807c9e1c26d020bc1d44d27c16663931 SHA512 a42e693f09d9c5dd058d445fda0acf0d06cf5b60ae60ee2031f95a76116702ebac5fab92520ea4672b66b7eca919b64a412848920d2257ef7f8f7ce2fcb20af3 WHIRLPOOL 43045f90ac93d6d3b74914bdbcb9a170f6f0820b6156b93dacedcddcc63383ecaa354ee6367277b1660cd1d4f39e4a7a31dfb8d2fe14bb050ab71bdbd708adcd +MISC metadata.xml 558 SHA256 b1599c6e269d7982c878931bb51e7871edd85db46c6080df477f67e785bd1ff9 SHA512 48dfc3b18f1ab9d5c3ecd82e2eb30ec907a65c38b2cb28d6253c1a41990f9dd05ca86c7696c6f218b14149e115e9c1ad257f43ae3c7d37854c416e02855abf07 WHIRLPOOL ffc9c0fbd081e6cf87d0e49a6c330fcb381b5710b76c1f0037f2f7a6958ce5e98626fb6cbe98d59aec924b2501f833f407cca60af66439e57e7c70a78325ab83 diff --git a/sci-physics/hoomd-blue/hoomd-blue-2.0.2.ebuild b/sci-physics/hoomd-blue/hoomd-blue-2.0.2.ebuild new file mode 100644 index 000000000000..4eeb2d729682 --- /dev/null +++ b/sci-physics/hoomd-blue/hoomd-blue-2.0.2.ebuild @@ -0,0 +1,69 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4} ) +CMAKE_MAKEFILE_GENERATOR="ninja" + +inherit cmake-utils cuda python-r1 + +DESCRIPTION="a general-purpose particle simulation toolkit" +HOMEPAGE="http://codeblue.umich.edu/hoomd-blue/" +EGIT_REPO_URI="https://bitbucket.org/glotzer/${PN}.git" + +if [[ ${PV} = 9999 ]]; then + EGIT_REPO_URI="https://bitbucket.org/glotzer/${PN}.git" + inherit git-r3 +else + inherit vcs-snapshot + GETTAR_VER=0.5.0 + SRC_URI="https://bitbucket.org/glotzer/${PN}/get/v${PV}.tar.bz2 -> ${P}.tar.bz2 + https://bitbucket.org/glotzer/libgetar/get/v${GETTAR_VER}.tar.bz2 -> libgetar-${GETTAR_VER}.tar.bz2" + KEYWORDS="~amd64" +fi + +LICENSE="hoomd-blue" +SLOT="0" +IUSE="cuda test mpi" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + mpi? ( virtual/mpi ) + cuda? ( dev-util/nvidia-cuda-sdk ) + dev-libs/boost:=[threads,python,mpi,${PYTHON_USEDEP}]" +DEPEND="${RDEPEND}" + +src_prepare() { + [[ ${PV} = 9999 ]] || mv ../libgetar-${GETTAR_VER}/* hoomd/extern/libgetar || die + use cuda && cuda_src_prepare + cmake-utils_src_prepare +} + +src_configure() { + src_configure_internal() { + local mycmakeargs=( + -DENABLE_MPI=$(usex mpi) + -DENABLE_CUDA=$(usex cuda) + -DBUILD_TESTING=$(usex test) + -DUPDATE_SUBMODULES=OFF + -DPYTHON_EXECUTABLE="${PYTHON}" + -DCMAKE_INSTALL_PREFIX=$(python_get_sitedir) + ) + cmake-utils_src_configure + } + python_foreach_impl src_configure_internal +} + +src_compile() { + python_foreach_impl cmake-utils_src_make +} + +src_test() { + python_foreach_impl cmake-utils_src_test +} + +src_install() { + python_foreach_impl cmake-utils_src_install +} diff --git a/sci-physics/hoomd-blue/hoomd-blue-9999.ebuild b/sci-physics/hoomd-blue/hoomd-blue-9999.ebuild new file mode 100644 index 000000000000..4eeb2d729682 --- /dev/null +++ b/sci-physics/hoomd-blue/hoomd-blue-9999.ebuild @@ -0,0 +1,69 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4} ) +CMAKE_MAKEFILE_GENERATOR="ninja" + +inherit cmake-utils cuda python-r1 + +DESCRIPTION="a general-purpose particle simulation toolkit" +HOMEPAGE="http://codeblue.umich.edu/hoomd-blue/" +EGIT_REPO_URI="https://bitbucket.org/glotzer/${PN}.git" + +if [[ ${PV} = 9999 ]]; then + EGIT_REPO_URI="https://bitbucket.org/glotzer/${PN}.git" + inherit git-r3 +else + inherit vcs-snapshot + GETTAR_VER=0.5.0 + SRC_URI="https://bitbucket.org/glotzer/${PN}/get/v${PV}.tar.bz2 -> ${P}.tar.bz2 + https://bitbucket.org/glotzer/libgetar/get/v${GETTAR_VER}.tar.bz2 -> libgetar-${GETTAR_VER}.tar.bz2" + KEYWORDS="~amd64" +fi + +LICENSE="hoomd-blue" +SLOT="0" +IUSE="cuda test mpi" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + mpi? ( virtual/mpi ) + cuda? ( dev-util/nvidia-cuda-sdk ) + dev-libs/boost:=[threads,python,mpi,${PYTHON_USEDEP}]" +DEPEND="${RDEPEND}" + +src_prepare() { + [[ ${PV} = 9999 ]] || mv ../libgetar-${GETTAR_VER}/* hoomd/extern/libgetar || die + use cuda && cuda_src_prepare + cmake-utils_src_prepare +} + +src_configure() { + src_configure_internal() { + local mycmakeargs=( + -DENABLE_MPI=$(usex mpi) + -DENABLE_CUDA=$(usex cuda) + -DBUILD_TESTING=$(usex test) + -DUPDATE_SUBMODULES=OFF + -DPYTHON_EXECUTABLE="${PYTHON}" + -DCMAKE_INSTALL_PREFIX=$(python_get_sitedir) + ) + cmake-utils_src_configure + } + python_foreach_impl src_configure_internal +} + +src_compile() { + python_foreach_impl cmake-utils_src_make +} + +src_test() { + python_foreach_impl cmake-utils_src_test +} + +src_install() { + python_foreach_impl cmake-utils_src_install +} diff --git a/sci-physics/hoomd-blue/metadata.xml b/sci-physics/hoomd-blue/metadata.xml new file mode 100644 index 000000000000..1b92a0a45128 --- /dev/null +++ b/sci-physics/hoomd-blue/metadata.xml @@ -0,0 +1,18 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>junghans@gentoo.org</email> + <name>Christoph Junghans</name> + </maintainer> + <maintainer type="project"> + <email>sci-chemistry@gentoo.org</email> + <name>Gentoo Chemistry Project</name> + </maintainer> + <use> + <flag name="cuda">Enable cuda non-bonded kernels</flag> + </use> + <upstream> + <remote-id type="bitbucket">glotzer/hoomd-blue</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/jaxodraw/Manifest b/sci-physics/jaxodraw/Manifest new file mode 100644 index 000000000000..38a9689594f8 --- /dev/null +++ b/sci-physics/jaxodraw/Manifest @@ -0,0 +1,6 @@ +DIST axodraw4j_2008_11_19.tar.gz 20930 SHA256 60353a25563cb4e987304a7d030bbc7e85c688c881f804cd08e8ba76a370af61 SHA512 81bfcbd1b121104e0058654ac5520d0f570f9a915e9f6dfb8c52c11e9cf92f1e01c800182c2dc34e503a6eceafdff462b4f57dfa5bb5db979101a106c10d88c8 WHIRLPOOL 4614a82192fdcc8606be1d634c3a3634107d268a3246043f68ca8bb9d4d3c07955c04e89b7886a7debdec67896ac286647e6208615cad73d57c8d66b0c6c19fc +DIST jaxodraw-2.0-1_src.tar.gz 3740719 SHA256 e3f456214b9a11dbef030d56a1c6495ea627b0464820792e1998cae9c55554a1 SHA512 ec5866ba03b6f3ecb01ce92f95aa90959153b92eb571f10764d4d10f2fb7a7a0d02a325eb221600526c94faadd53466cf894e4dcba7201e3494555a6330dba02 WHIRLPOOL a146213c3a31fcf64bf0b626dd1ce2996842990196c9708592b461fb33e019f735396153a400d878971bd459ee056462bbb6ab47974f97efcdcee8520455a1f1 +EBUILD jaxodraw-2.0.1-r1.ebuild 1428 SHA256 91b3c0b2812b639a81fa1583198bbe24f5ad2eeeb2cffa7c1ad3744b8687cbbe SHA512 32ad452613bbace601422df3836a52c27aa36e405ec659ebf61b0aa20a7d2ebd847817e263994b71199d6f9f2abd5630e3a6f9140523159a247d2ed1dc6fb6a8 WHIRLPOOL c70a41e1e352c274b37d0db451eb1af2a3a4eba5aacfdb4face7cd6146ee68de75460039325763d2dc29a2b514cdfdfde2134f8b30f95802655a0a93b7e5fc21 +MISC ChangeLog 2439 SHA256 9ddd1a2163084c1f0d44b2e51f8c45d205583f356538b30a1c9905af6c941cd2 SHA512 df0a17f8e80823b88671b7eb07889f78195c97a1babbad9c24adaaf0128c1bebde77121d055da79865da2f0ae802c317612b1847a98514035e36dfccddfbd1c9 WHIRLPOOL 79f7f1c690abe33a38660e4a3aff27dd19c38492ea0cf8ff2a58b5703512a9eb73609f5232f5a83f16537f962cc402bf17c19c1261f72d99c815c054722ecab9 +MISC ChangeLog-2015 1971 SHA256 0dfef1f9657a5321b5876f5602a651ee07b6fdd44ec21e3fa130b88498122fb9 SHA512 0026f254d3d8dda99d90608727a307b533bd9cb920c0d7685976d9405db27135a565834da65d69390af6e1a38164b6f073319188b67a046a46fc3e83e2936a25 WHIRLPOOL 1f99dee7811f09bc9145808effe18e01f77d819d6c842f0261f967568dc70ddc9c8678677a256639bb36fdc8b59c97a57a715c42640913cf64b9ad642630187b +MISC metadata.xml 314 SHA256 b557ed060f948812da2a0a2608ed6a2ef185dcec3f4abccb42355c6e30c9d0c9 SHA512 1f40f324bf0a347ef9bcd3345a6ae23890a29b7b436fc8508d0bfeb4df8bddfa3754807e63fa40f8978cd7109755ae5b056462beae202ba577ca588d29a30f8c WHIRLPOOL 74721bf8f6868f97d619f20ffc0482e489d94e5afc1c6cf34579be84d1d2f2d83160fcae81325b2e41f10140feb85a9a5235831e4dbaba9349218360fd17820e diff --git a/sci-physics/jaxodraw/jaxodraw-2.0.1-r1.ebuild b/sci-physics/jaxodraw/jaxodraw-2.0.1-r1.ebuild new file mode 100644 index 000000000000..3f22a51a7df5 --- /dev/null +++ b/sci-physics/jaxodraw/jaxodraw-2.0.1-r1.ebuild @@ -0,0 +1,64 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI="5" + +JAVA_PKG_IUSE="doc source" +WANT_ANT_TASKS="ant-trax" + +inherit java-pkg-2 java-ant-2 versionator eutils + +MY_PV="$(replace_version_separator 2 -)" + +DESCRIPTION="Java program for drawing Feynman diagrams" +HOMEPAGE="http://jaxodraw.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${PN}-${MY_PV}_src.tar.gz + http://downloads.sourceforge.net/jaxodraw/axodraw4j_2008_11_19.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="latex" + +DEPEND=">=virtual/jdk-1.4 + latex? ( dev-texlive/texlive-pstricks:0 )" + +RDEPEND=">=virtual/jre-1.4" + +S="${WORKDIR}/JaxoDraw-${MY_PV}" + +src_install() { + java-pkg_newjar build/${PN}-${MY_PV}.jar ${PN}.jar + + newicon src/site/xdocs/images/favicon.ico jaxodraw.ico + make_desktop_entry jaxodraw JaxoDraw jaxodraw.ico + + use source && java-pkg_dosrc src/main/java/net + + dodoc src/doc/BUGS src/doc/CHANGELOG src/doc/README src/doc/TODO || die + use doc && java-pkg_dojavadoc build/javadoc + + java-pkg_dolauncher "${PN}" + + if use latex; then + dodir /usr/share/texmf/tex/latex/misc/ + insinto /usr/share/texmf/tex/latex/misc/ + doins "${S}/../axodraw4j.sty" + fi +} + +tex_regen() { + if use latex; then + einfo "Regenerating TeX database..." + /usr/bin/mktexlsr /usr/share/texmf /var/spool/texmf > /dev/null + eend $? + fi +} + +pkg_postinst() { + tex_regen +} + +pkg_postrm() { + tex_regen +} diff --git a/sci-physics/jaxodraw/metadata.xml b/sci-physics/jaxodraw/metadata.xml new file mode 100644 index 000000000000..5a55b59119c9 --- /dev/null +++ b/sci-physics/jaxodraw/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>java@gentoo.org</email> + <name>Java</name> + </maintainer> + <upstream> + <remote-id type="sourceforge">jaxodraw</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/lammps/Manifest b/sci-physics/lammps/Manifest new file mode 100644 index 000000000000..1a67d736b790 --- /dev/null +++ b/sci-physics/lammps/Manifest @@ -0,0 +1,52 @@ +AUX fm_exp.patch 347 SHA256 27485c1aac28dafa0ae8584ecf319004e79d321007a52741ec2ce75010c89c62 SHA512 d0c8303bfe623fe766a545e1614f7576709381597e56f7c7634e90768376bccb9fbe37d4c0eeb6491c9b45d911a913a37386e0280ec3f05a90388aad7bb23c3e WHIRLPOOL 36b40a941eac602f99bce4cdd354829b8e032108a82c1b1dd60ead65cb82f03ec8f94c76edccb47a8e0ba577e565fdf488dec9acebb8b829bfc8b3f21b376fc9 +AUX gcc-6.patch 397 SHA256 703462d81a7c852e8df1003a34fc8466179c6f07ce8421819611b169ba28855f SHA512 eebb9041347dbe260be6028d9462183188ce95f3114873b2a776990aa77c71dd4b0ba37d2fe3fbf0b8bff64f85dfafaec93ad7234502791a1048ab6bfd1d06ed WHIRLPOOL d6b09ac41e5494e4d1dabe9dade20b0f4a398a35ffbe887a34eede2b8ea3bdb3813280213fc07a701a10e1fa39777fbdd715dc765534c7c98b8ecb105c2a7d2c +AUX lammps-python3-r1.patch 544 SHA256 32619c3481a35b7994e2d3f3fc6cca90da88a33eec981f97670df444e7f2fa63 SHA512 833ec755ba4dadf072ced646220a7a68147023548da9eeebdd1d4a6c198ee48fed1e60a7fc26de7093b5d9b77a906e162a7ef4f5f929918196943564f69037d5 WHIRLPOOL 6775aa29fa49c9f1c98b68550979a935e47f364cf655bace64c259cf29bb0a7a3cbd1a3406df976f79a61562480ec0085f8532076bafc644ce424245a16922f9 +AUX lammps-python3-r2.patch 459 SHA256 6b0020f68f90e036910efc74fa3daaad3115df3079376c309f8b87429b641034 SHA512 87e12b5089ca6d75e9ec02b773964fbde0170a56876ae990648362757ff110a817d7a968e9496cd6475faec22a8a6c9d71d3367f564b34bba297b8e8eb0940c7 WHIRLPOOL e3724e1f7c07528929c46ec4b79a152b0c801ab13750a32aef59c0da3f7300ae1a2186bd1c5b8cf8e925db68257bb502377bca1526ebc317c29a38044c587a37 +AUX lammps-python3.patch 509 SHA256 85ab3e1d1cc123af8d63400ec1b83f52f50325aa6990ae9f2f032d6753f8553f SHA512 e88b7e036c3ea86c032a7e8dde771073c08ed96c0a3da240a824fd7f424553ef4d5db2ba6c4fcfcb9f0ec4550a073e7370a163165352911ee4f1d64f91094056 WHIRLPOOL bb73c0b001b39266d4586ff7c409789599b8e64785609037b96e6bbcb89ac100fa4171230fc8e6b28017d898b591c8c0188aace223caaaa728477865a2e97699 +AUX python-shebang.patch 393 SHA256 77ffe7208de583b53f0ec4e688d647218135fa0cafbe374b56c6f4ceec3229e1 SHA512 fd4663ac2ce6949e59509ab03a7eda4471e38350440fe6c64c9fe5321941a5951074578148d0da335292a4e19c6c0b13d3e97c174123eb1d9662bbd63247b5e7 WHIRLPOOL bd792c3cfe7bb85b436ba11e2574c6bfd21364566236c89ca7330206f781d474117daa9cf44c9a4ba902349c673aaefeffb84e45b2afc2553359dcf270370370 +DIST lammps-10Aug15.tar.gz 87890369 SHA256 450a765f94b70a6f38637854f1d7496dca98d359414c527f8de99bed1fdd94d2 SHA512 fc395cf7e59de7e71bad64e2500224d33ff0f76bb79530fdcde5ec9879b91c332d1421a25e5d5bb9cc47a55745e760d01b2ac8ad29f9e71c8a90a0ace9212618 WHIRLPOOL 3f50513137283f4deb9b6a2c13a7ba63814b0ddd59d33e428fba9d3f94f61baa1b3b9d9d080982453a7828d2a98e619cded4d27716fd165db595832a157c9f6b +DIST lammps-10Feb15.tar.gz 62912048 SHA256 59373e9b5592f7b697a144bbce1fb742726e03536b7bb355dac7a9e013ddf9b8 SHA512 a7804377a23f03f338bdaf443439dffcdc52293b4c45e6369b340a1107510fed0b8a198e3b5afcff2e04e109985b52ee62e7b28276697bae37ac6f783d1ab9f2 WHIRLPOOL 09f29cadf8b072d388abe45ec219341d2a14a6c9cc9e4010a0f7945e930e9984738f7837748d117ab95ca76ce0c8d9160fe88dcec17e8d21b81f385dec8f7005 +DIST lammps-10Mar16.tar.gz 88637744 SHA256 b40d79d4a8490a549dc46f259ce65095d75e78059b002083eb899825e802c1ac SHA512 b850c9f9826cd7f4db2d922c9ee1bc8302ea5cf92200f56e5aa834850f690ee8e17dca6e431651ccfded34bd79e2b8e50cfb2e7de3bd93359279f06bb8704424 WHIRLPOOL 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e90816bf20622200f5037415e5c45a0f950f7407886121708b794b1e75b93c3a SHA512 7dc2043afba78ec8d61b5880b6123952b42e5076fe7e3c3855186215054bc28710b89fd5b015d495fcfe38d5970efd43f3e6e834e80f39b6305b551d39f5eeab WHIRLPOOL 13bd3f41047492035c24e11d47b36ec8565d226738be492159ba498827c79eab4a7ec7402e037820b635b0d8d4c56fbdedea482f2f93e370275d717c93bc281c +DIST lammps-15May15.tar.gz 63835027 SHA256 0233ea98c7d77d31bd0a538bb674c0ee8f000f1d0ee1b8c049072873192aa228 SHA512 a23c16b98117590b15ca7662b878fb2f76ec41399c329c98deb48e28a0ffce293443269513a96c2503389894b598787b19dadc210d4b4dbc6a7432caf633e7d1 WHIRLPOOL 4c4edfd772bbf534e42fc43e1feaf3b8f76e74c58ec1e985e3c29ee0d8e64aa8c501b8e45e078643409c320a1d834b0d5eb699e7d1ec29df06be0126d12492f1 +DIST lammps-16Feb16.tar.gz 87776530 SHA256 058459f3053cca0b8c0fdd05cca7acab6ac00934c6da8c9008aa0f55fb5ceefb SHA512 f9fdfd4d3b70c864b4dcb7e58315f6fc81e3647a6bc2956d6b3e2760b3edbd8f933a406eb9b32697cabd0d7f8fbb897d873a399c855cb29f3635d6dc797212b8 WHIRLPOOL 84aed0bed369e13bc418b920cf2ef66a72cf956898a4a81c2008394bbdef80bb875caf8d61c80ae48d7844a7abdf351240d48c56365848b0d52e9159d952b1bb +DIST lammps-1Mar16.tar.gz 87945422 SHA256 af2bd7ab2a28aa14b8afa3d8703cbaf27d924400e237bf44e9e2da091c0b91eb SHA512 25b59f840187053a9f47bc41f5d0b29a69ac507e05528fb3e84c2bb8facd90fff95e99cbd8707c8d087371355a2e1c5af1eb3e4115b788444af5d129e754fe9d WHIRLPOOL b45f4ca459a88770c6d194f609f55694bdb50b7a54cf57a34995e4d3f6f0b432f99fdd9c7187c8e614a98b31387bfcc259baa9218f2c3bb5e146991c3a113207 +DIST lammps-20Nov15.tar.gz 90227651 SHA256 7c392c848e73335226b2fef6bb8034b1152f91862d955a3bae00502bf9d8e8fe SHA512 4bff70e45fb30be10a33b4c6c60b73cceddf8d42588b0630b4802f1e61dea3c237c01c3667585ad210ef2cdb811491b1b8495718a90bb57853c58245e29d1fe4 WHIRLPOOL a01f54911a5edb666ef5af5302cf60d61d58d20f2112578e4d7bd16787b2bf59da09e9fe7ffa021fb6a97db40b23301ed77010f48a05e5471742c0e71413b7e1 +DIST lammps-21Mar16.tar.gz 88654277 SHA256 c2f627db22f332995d90521f0e8d8e9865b85b49cde0ed4bcf727bf4b9b12767 SHA512 27e4a3a0c2c17fb9c85716b499ca2b3de8b0a699891afd32c8409117a0fbe27f1bd84ef16288cc5abda87ee8a7b1059960d8caed5aa339f54290aabeff0fdd4d WHIRLPOOL 370f79af4a8e55851aa0c071d02baddaade991a3208fe504f8b92796bbdb9b17b85af898a71177bbc67d885ffdef9280621c9b7f4bc22cdb14808332cb2eccb8 +DIST lammps-22Jan16.tar.gz 85952234 SHA256 46425bf0ae73f716195a29dc9823c2c5989504f85b49a316bc304caaf6e6a674 SHA512 3ceeeaf76621bbc11ea25d5fb321b602b34ffb3893898a704b02e5cd428a36b2017006fdc1f7b1c5f957c33f26ca103a2939538ae7937555e0b25b5852cd48f3 WHIRLPOOL 7f61ea1924eceb190b7cf56ed32db75f6a45c99dbf1522862124f59acd1f79b1a46310d5e31a988011461a55c319677eaec2bf713e9a5cda0411b5d2280aa784 +DIST lammps-30Jul16.tar.gz 94454127 SHA256 41104065bfb433e9c69a88bf4c0d760a02186cbf81ec481332665b28f8503c1f SHA512 2ebcf30502810f8d6be107760bef0b9b4591142511ae410e7b44573fe9988bbbba5e8d5bfd16f74a3875bb1c41dbc6216a1c7e8a9b1d316fdf19a901ac4479d5 WHIRLPOOL e081b9eaed5a439be1c80c844629030af02b4cff6ed57cac3db209981b9d4e7381315c82de5f76fff7f8ead5b6250a1a4207d3f18c97c59e3ece2a716697175e +DIST lammps-6Jul17.tar.gz 119855769 SHA256 0bccf939745309075dc9ad76f5b24e8dc2a9d17165f22f1d11ee7dbc11a5f16e SHA512 6351020311e63be126bf74adaf5667fdf232de48e74f269248d565fa0b6038c81bb16d6b5d01a7de0fdcd195aed41e9b4b69c339c6ff6da585babd458a55f04d WHIRLPOOL 8e4170982f135e82251dd21fa3fdf5d0880f3255a7f838f74c153059fc17fd7aa1159f5425151c5f655a2f7c4cc485451e19c1bf82210a7fd9034316f3d89c77 +DIST lammps-6Nov15.tar.gz 90177074 SHA256 b908d87106e89aa813c3d1a2e89f297ab42471ee463ef950f87f284d62aa24ac SHA512 91f8e33a00b3605dbb78f622a19886c11ca8ef3f4babe74e8d8f90bb176d5689e75d619155f58e6754a2756d20c05b74389e34f024167cba1841b8aade171daf WHIRLPOOL 4541537ea73292648764d6c8a7560f3127b8f911f4dcff0a97735c8e75868dc3aec7c2b32a2928ea446e8cfec87c81c9f86a635d29f3a65f42fd27661725911e +DIST lammps-7Apr16.tar.gz 88791123 SHA256 f87c11cbbdbbb64a337e0608ae0fde11f77d9b32d081a8095376db9bbecc6d5f SHA512 1045f0337b37a19760718a2b3b48d31608248069a8fb2dc43daf555e44e720db770ff53e2a2db09c3e1f2703bb98894516229382c810ce45cca3647f353a21cd WHIRLPOOL 4ed6e93efff84888f982aec4c55adff6eda94fec5608e473fe821f77ea7a867fa7de23cf54fe28007b61304e41c9d7e42f4994e455bfb67cfadf79dbfc019e0b +DIST lammps-7Dec15.tar.gz 82168656 SHA256 7fa1bb1089437c0f38f8c6920286e2f8424e6449956b4d570da2954f507af1e7 SHA512 13078e7614402efc310a178506134409b40fb2768c4d7ee1cfa6992b247ef25169288ec99d4314b1a98125037d7c1c954bd114abc6ac41c58f60506358d150e2 WHIRLPOOL f9ba52c0c93ea6950b2ee7e0f5e15ebef6ea50f647d23cb2f9a1caf523d3dfb8d52adbdf8f8840eebd7f79fc59ab294310b7bf7109b27c6b7e9d6e7d2f18b7ee +DIST lammps-8Dec15.tar.gz 90700099 SHA256 1782a856dcba1696e6e921d891f259e525de750d7cf39ce9457a1992ee4db91f SHA512 0382683a363975bd27cc1722932cd5b8eda9933bc9c676af135d7e4d784acd93cf60b2b47a19dbb9e4a05e5cf2fbf6ccc2c2a914c39e92e87009e23ead2eb497 WHIRLPOOL dca88d8d55e96c20702856b2074d631ef8f6a0f6209672e612778209ad188c800a673e09605033851349b400241b1f7c8e5e05bad49519838abfe5fe44467c43 +DIST lammps-9Dec15.tar.gz 82374079 SHA256 36f918174826a80f54e65779ec939e185e81c71f747cb1524e43c58b1869491a SHA512 a35ef5b3ee99162b96ce1a6d6cc3b0dc18bab7f693b824fc7ad52a7477234ed45c3081c399155725f1ebc3bd1bed312176f08d3fc807e7099d4b41b8f75fd11c WHIRLPOOL 045d817e6a2c74fa2f4a5eb337328d6d9183fcedca44a1e608c59bd83fd4086763ff4d6ebed3715ba23cbde04f1233ef3e4a8e3e964ff3af3744c70580b51d0b +DIST lammps-9Jan17.tar.gz 109694893 SHA256 bd3695886e43c5670293efc08ce02c5cd2332d6feb57b4023a6e7b7371a90395 SHA512 ea7c61bc9607ff0e4c0af5c1a668d400841dfc11c6d6aacc6131a48a5a0d11cb6857303626b583d5119e5257b5b338853c5afafcc3870bb30d5743ff5648348c WHIRLPOOL 4678b60f0966102dfb988e289493a94aa2639ad7a1725c981fdb3be15dc7a0c22a81d6d3fe4371188cb82fab25fb4aa4ac7f8c0e9ed1eb2f8983b27f6349fa37 +DIST lammps-patch_1Sep2017.tar.gz 88751184 SHA256 bb05b59c57609be5efb1d70ba3d04c337e92c75fc7eff767921611c5df14bf0e SHA512 01b56484d6e9d03c0cdc2f8100f571d6e0a354b08bda7f22176744f2724e566443514e7d8abb0571d4207709155441644d4c6dbcf17ee2a8dc4f10cb6c3e8ac1 WHIRLPOOL b4ccae0152c56850dbe50492f4fd545b15ab0418856a3d3c34cf500055463b696952dc38cd3aef194257cbd7166c2c52493bedccc6627d1bd715d8a4b2700910 +EBUILD lammps-20150210.ebuild 4832 SHA256 1861439cd0623061a386640666c88a4bcdbe5a4fbad3ef77817421d0af99f6ee SHA512 fbbfd6768d9ee99f49aea6abb030486a7f80c4aad95412407031499681a2a36997c31cb4873e0ab867425678b952a44284129accde9abe60c1bfb891c38d2dfa WHIRLPOOL ed0ced67810ca9c0669f11660b7cb2c72b15f444a7d553097579864de712d84a7438014f94efd6a2d133cce61883851acdf1d0093fa453f5964c7ef9effb6998 +EBUILD lammps-20150515-r1.ebuild 6708 SHA256 3795e257072f6a74f244316c5942750ddc469e7611f9e363ea922ad6f70a5a47 SHA512 72c53dcd1cade6756010065353742f75eae95a4178e133509dae09233007491c52c3c5bfa3f98243a8d32066c0320c1726d99e1bf06c6e2e1ff16fbe2592d75b WHIRLPOOL e0ef43529559a4d17616ecede83013c8ceae7f38f663c371e752e6e1c2bc7e1fad481b543293b5fe026a447e78e3b3a3c0e85827a1b3184b41b570157a232de2 +EBUILD lammps-20150515.ebuild 6703 SHA256 2a57617d3bc6c2924873c6f5a024da3626d2cf4b27adfb324710842a72d2ae63 SHA512 cfc3f0c55d93194db134dabf9153739904c5afb036ad9917930086c3d5cbcef9ccbf8afc6f682ecd22b2b73daee7dc2cd6fcc4f5da0f931b2e1b7561084a2464 WHIRLPOOL 3804371c96bbfab0af2244720d7a7e5cdbf8cf3850df178ce6168579e6d698e49169eec219993dd637c763dcf282a4ee6c81bf1d365769e6642a5f9ec18defa4 +EBUILD lammps-20150810.ebuild 6706 SHA256 642ce09c41f4ccfe021265b15755dfddc456b155185bd0f6352cab47ef83619d SHA512 05e4196ce5dabf5f5bf6fcf8c42003a618d5e1103665eb7473941f13a58946a53e9fc87a194bbcd60b0946856cb4f7b2dffa9f4ac19781fbe82ca9f93af9dffc WHIRLPOOL 35f3fcce2db7b5a3bfa6fd64484c05356ea785e05987a69575f75e03c2ed3ca999b3d6d851920c3f1f106b005fe2a6e173b6061e8e13fb06fa14ab6d37be9963 +EBUILD lammps-20151106.ebuild 5878 SHA256 48eb951012aaf3c2a8de02c06e3b528b9fd116719232e1e185e2eec02078ffc9 SHA512 6b078dd762c0397b418c8d4cbc69f9834578b0de21ef8f6bd6a66ac8a60b08b776057a386bd01cf9d9761e4b8f4599c458cd6ea46726164edfd58f1d32a446d1 WHIRLPOOL b5bc2b1fdc0dc2ed946be01e32f2c3cf248a1a2303fc46521e8b49f6cfa21a83e2493b07ea0c21c0e897f4a85fb9b63faf14c72269157c1dae4c8cd79ee7b946 +EBUILD lammps-20151120.ebuild 5878 SHA256 48eb951012aaf3c2a8de02c06e3b528b9fd116719232e1e185e2eec02078ffc9 SHA512 6b078dd762c0397b418c8d4cbc69f9834578b0de21ef8f6bd6a66ac8a60b08b776057a386bd01cf9d9761e4b8f4599c458cd6ea46726164edfd58f1d32a446d1 WHIRLPOOL b5bc2b1fdc0dc2ed946be01e32f2c3cf248a1a2303fc46521e8b49f6cfa21a83e2493b07ea0c21c0e897f4a85fb9b63faf14c72269157c1dae4c8cd79ee7b946 +EBUILD lammps-20151207.ebuild 6014 SHA256 7961b4b0c7137827223cc35d9d3bd654a28d52fc00cd6040da52e1758bacfb57 SHA512 856d2c80e7facc7b029fe3eb4afc83ab6a51ee7aa50233af1165260b2e5306485cf682977ad30b6f22a131eb1ee74d525c2c5aca76c19dddc5188d0cf81d6a97 WHIRLPOOL 7ad489d97305e7358a9bb1ce0500ec45fc8ea34b4b1cdb585a2662d052a1ae662ca2c099596b783b56edcf449eb3fdfcc217d45c05785fd898eb3aa26f25be6b +EBUILD lammps-20151208.ebuild 6016 SHA256 235eefcd45cea07d2548aa8cc20e0e6afd73ca0b87107a7fe43d207241d451e0 SHA512 a7ef308b8f7cc52908fcfa09e6456f1e41d6ecb79f83e82b2e9e7865b35a7540fd4609e6b572ca103a74e262cdd9455ac069e9ea7bf8373dd8c1a0e91b8ae14d WHIRLPOOL 421d1cfd2e9e959bcae66340dc7d62d57729e02e9bd2a2794a9a55b55a5ab10c5c06df6502f5a2215a0e29b1a5d33e32651e7a28ab8d1a2bc203d55af0721ee4 +EBUILD lammps-20151209.ebuild 6016 SHA256 235eefcd45cea07d2548aa8cc20e0e6afd73ca0b87107a7fe43d207241d451e0 SHA512 a7ef308b8f7cc52908fcfa09e6456f1e41d6ecb79f83e82b2e9e7865b35a7540fd4609e6b572ca103a74e262cdd9455ac069e9ea7bf8373dd8c1a0e91b8ae14d WHIRLPOOL 421d1cfd2e9e959bcae66340dc7d62d57729e02e9bd2a2794a9a55b55a5ab10c5c06df6502f5a2215a0e29b1a5d33e32651e7a28ab8d1a2bc203d55af0721ee4 +EBUILD lammps-20151211.ebuild 6016 SHA256 235eefcd45cea07d2548aa8cc20e0e6afd73ca0b87107a7fe43d207241d451e0 SHA512 a7ef308b8f7cc52908fcfa09e6456f1e41d6ecb79f83e82b2e9e7865b35a7540fd4609e6b572ca103a74e262cdd9455ac069e9ea7bf8373dd8c1a0e91b8ae14d WHIRLPOOL 421d1cfd2e9e959bcae66340dc7d62d57729e02e9bd2a2794a9a55b55a5ab10c5c06df6502f5a2215a0e29b1a5d33e32651e7a28ab8d1a2bc203d55af0721ee4 +EBUILD lammps-20160115.ebuild 6089 SHA256 d9f7c926dc6ec45ca7ecd1df9082611ae21bd239b9c68ae443a9b277a543b888 SHA512 c81a79a1dc147f1c5d66ec865248d8d60417b358a33a0bcddce00611f6c8114d9d81542a65624e9defc48435a2b69aca6f66e20388256f9b6cb1cf7399ff6c69 WHIRLPOOL 7d6316d9ca7737112aca12536df80f5af1a46c321feb3f72cf109bd231ae635752e60f7a39566aa432d00e1355d4a8ae57b414f05ba715de498a0eb6b829c80a +EBUILD lammps-20160122.ebuild 6089 SHA256 d9f7c926dc6ec45ca7ecd1df9082611ae21bd239b9c68ae443a9b277a543b888 SHA512 c81a79a1dc147f1c5d66ec865248d8d60417b358a33a0bcddce00611f6c8114d9d81542a65624e9defc48435a2b69aca6f66e20388256f9b6cb1cf7399ff6c69 WHIRLPOOL 7d6316d9ca7737112aca12536df80f5af1a46c321feb3f72cf109bd231ae635752e60f7a39566aa432d00e1355d4a8ae57b414f05ba715de498a0eb6b829c80a +EBUILD lammps-20160216.ebuild 6089 SHA256 165930871e6b4b845d13dd2d39d098494f47cfaece913ff1d2b2c0c183bac3db SHA512 e77f846c4116f83eb40c4cad95fa3cd0d32d164c58edddd27af5e501743775169c77d3642d7ad15568cd10fc8ba0d30602652e4b2e98486eae8a6080f3873105 WHIRLPOOL 808f39ac243de512cf65f0fb5d5d7744eacaf98ffc8a2289efeec86e4cf815c843b30163cb900f88176407ec75026dbae662e56c2d2fe6de12742b41382b5ef5 +EBUILD lammps-20160301.ebuild 6089 SHA256 165930871e6b4b845d13dd2d39d098494f47cfaece913ff1d2b2c0c183bac3db SHA512 e77f846c4116f83eb40c4cad95fa3cd0d32d164c58edddd27af5e501743775169c77d3642d7ad15568cd10fc8ba0d30602652e4b2e98486eae8a6080f3873105 WHIRLPOOL 808f39ac243de512cf65f0fb5d5d7744eacaf98ffc8a2289efeec86e4cf815c843b30163cb900f88176407ec75026dbae662e56c2d2fe6de12742b41382b5ef5 +EBUILD lammps-20160310.ebuild 6089 SHA256 165930871e6b4b845d13dd2d39d098494f47cfaece913ff1d2b2c0c183bac3db SHA512 e77f846c4116f83eb40c4cad95fa3cd0d32d164c58edddd27af5e501743775169c77d3642d7ad15568cd10fc8ba0d30602652e4b2e98486eae8a6080f3873105 WHIRLPOOL 808f39ac243de512cf65f0fb5d5d7744eacaf98ffc8a2289efeec86e4cf815c843b30163cb900f88176407ec75026dbae662e56c2d2fe6de12742b41382b5ef5 +EBUILD lammps-20160314.ebuild 6089 SHA256 165930871e6b4b845d13dd2d39d098494f47cfaece913ff1d2b2c0c183bac3db SHA512 e77f846c4116f83eb40c4cad95fa3cd0d32d164c58edddd27af5e501743775169c77d3642d7ad15568cd10fc8ba0d30602652e4b2e98486eae8a6080f3873105 WHIRLPOOL 808f39ac243de512cf65f0fb5d5d7744eacaf98ffc8a2289efeec86e4cf815c843b30163cb900f88176407ec75026dbae662e56c2d2fe6de12742b41382b5ef5 +EBUILD lammps-20160321.ebuild 6089 SHA256 165930871e6b4b845d13dd2d39d098494f47cfaece913ff1d2b2c0c183bac3db SHA512 e77f846c4116f83eb40c4cad95fa3cd0d32d164c58edddd27af5e501743775169c77d3642d7ad15568cd10fc8ba0d30602652e4b2e98486eae8a6080f3873105 WHIRLPOOL 808f39ac243de512cf65f0fb5d5d7744eacaf98ffc8a2289efeec86e4cf815c843b30163cb900f88176407ec75026dbae662e56c2d2fe6de12742b41382b5ef5 +EBUILD lammps-20160407.ebuild 6121 SHA256 32f4f2f393736d48c77615483b424a40519b77b62dcabb42b9f8c4920d35017a SHA512 57734f68cc75b0c7eb3946a17c8bccb85cd8655da6d8b4a768b373e573fc3b89d6895889b6a2fcafa2996a49085cd197de81b470889aac961bfb6fa207d65be3 WHIRLPOOL c08f07044bf9739943ee3ec2f20c5275c322cfbf2578c5f2da6f5f3355e19fa694954c07a20c112d312f62558a9982d8d348af63eff643b5ce6c6ac58f759572 +EBUILD lammps-20160730.ebuild 6059 SHA256 1c192f1359dd0787503c6c53663fff46536db64ff9c79b5f646cf5b6840b6718 SHA512 8fa9070d11b0fae9b164b61981b1fa932d94e2b057e5fd8f528f46eb43d583b6194028f6d2d151211cfc8703c70d5d159a318479ed67111265065dceafd4d420 WHIRLPOOL a0a0f27b530dadfe8e7b30273a49cba3e37602491c4cae5165a7a3b67d5fbaca90dd0f3789312999a9e9f0d5a0d0a4d01dd6170cb95662594530d10146d1b178 +EBUILD lammps-20170109.ebuild 6065 SHA256 eb3fae5034409a59d3759c443d513726dd95146fad53b85ec85133fd1f5aa00c SHA512 378c5492381ee3cd2b13fb1f916cf29998177a375aa53e882730e9e1bbd356b8b61eef016a5d8bb6aecdf6f67fd3a037a9e10c0bca19d91667365088a79412f9 WHIRLPOOL d9ba9f27163e2b17b850bad46d07bc7dad2a23aef6db7d63712de92890a4d2a5d0f778eb4ed4b10dfde5d06c1466bdd09dd8109c360949d12c77f45f81a83323 +EBUILD lammps-20170706.ebuild 6029 SHA256 0484ac0c7c7dcf419bc115945d0ae79204dfeaec3597344af44e6b36e02e75bc SHA512 1d2ec7049133298285399a61a7be362bd76f003dbe237a7c60e634b8a88ddd38829c05fef1f8da9bd38278051d807c72239317cffd36c87fa7e1d39845132049 WHIRLPOOL 3e7a77c4c3811f0e7092689e51b46ae2a12465a802e84e4934ea1ca3fd47b2f25cd9df5997f997d8a9d3d36282b4a8b417cec35afaf8edee4f179167f5aadd1f +EBUILD lammps-20170901.ebuild 3008 SHA256 5a1fa3a904952c9ea3df1a50839bd3119f3127a542d3f13273a7c4df538a75ec SHA512 766c140ce1e0889ec3b88c65047cec54668058ca53f0e3dc61312cedb716beeb402328632dcab4c32aaaeca8af7f733d03cec60fe9a0f342d1f0ae0eb50d6ad4 WHIRLPOOL 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c2f705fdad943e42dcfea29d19866e8257929d47eaa3adf906e94b2420bcc2e454a166a0e39ccbcef9f9963970785e522f552944c09395086e8f92d30c12e739 WHIRLPOOL 18ed7d84e758e3ccbe770bc79ae8a7778f3ad5dfe820e387fe751499b1d9875bca105204ed828b8730a6a2356d8b9f130a0d6abdae4d2b81b77faa9662066837 diff --git a/sci-physics/lammps/files/fm_exp.patch b/sci-physics/lammps/files/fm_exp.patch new file mode 100644 index 000000000000..3b6bd24028d6 --- /dev/null +++ b/sci-physics/lammps/files/fm_exp.patch @@ -0,0 +1,11 @@ +--- lammps-30Jul16-original/lib/meam/fm_exp.c 2016-04-18 14:00:58.000000000 +0000 ++++ lammps-30Jul16/lib/meam/fm_exp.c 2016-10-06 03:15:55.631053526 +0000 +@@ -112,7 +112,7 @@ + return epart.f*x; + } + +-double fm_exp_(double *x) ++extern "C" double fm_exp_(double *x) + { + #if defined(__BYTE_ORDER__) + #if __BYTE_ORDER__ == __ORDER_LITTLE_ENDIAN__ diff --git a/sci-physics/lammps/files/gcc-6.patch b/sci-physics/lammps/files/gcc-6.patch new file mode 100644 index 000000000000..ca2bcceeedfa --- /dev/null +++ b/sci-physics/lammps/files/gcc-6.patch @@ -0,0 +1,11 @@ +--- lammps-7Apr16-orig/lib/atc/Vector.h 2014-11-20 11:59:03.000000000 -0700 ++++ lammps-7Apr16/lib/atc/Vector.h 2016-10-13 06:04:44.328977960 -0600 +@@ -119,7 +119,7 @@ + { + DenseVector<T> r(v); + r*=(1.0/s); // for integer types this may be worthless +- return ; ++ return r; + } + /////////////////////////////////////////////////////////////////////////////// + //* Operator for Vector-Vector sum diff --git a/sci-physics/lammps/files/lammps-python3-r1.patch b/sci-physics/lammps/files/lammps-python3-r1.patch new file mode 100644 index 000000000000..2dc2bd744fa9 --- /dev/null +++ b/sci-physics/lammps/files/lammps-python3-r1.patch @@ -0,0 +1,11 @@ +--- lammps-4Sep15-orig/python/lammps.py 2015-09-02 14:41:38.000000000 -0600 ++++ lammps-4Sep15/python/lammps.py 2015-09-08 05:59:16.000000000 -0600 +@@ -33,7 +33,7 @@ + except: + type,value,tb = sys.exc_info() + traceback.print_exception(type,value,tb) +- raise OSError,"Could not load LAMMPS dynamic library from %s" % modpath ++ raise OSError("Could not load LAMMPS dynamic library from %s" % modpath) + + # if no ptr provided, create an instance of LAMMPS + # don't know how to pass an MPI communicator from PyPar diff --git a/sci-physics/lammps/files/lammps-python3-r2.patch b/sci-physics/lammps/files/lammps-python3-r2.patch new file mode 100644 index 000000000000..a447c4b3a303 --- /dev/null +++ b/sci-physics/lammps/files/lammps-python3-r2.patch @@ -0,0 +1,11 @@ +--- lammps-23Mar16/python/lammps.py (original) ++++ lammps-23Mar16/python/lammps.py (refactored) +@@ -208,7 +208,7 @@ + result = (c_double*nlocal)() + self.lib.lammps_extract_variable.restype = POINTER(c_double) + ptr = self.lib.lammps_extract_variable(self.lmp,name,group) +- for i in xrange(nlocal): result[i] = ptr[i] ++ for i in range(nlocal): result[i] = ptr[i] + self.lib.lammps_free(ptr) + return result + return None diff --git a/sci-physics/lammps/files/lammps-python3.patch b/sci-physics/lammps/files/lammps-python3.patch new file mode 100644 index 000000000000..1937881c9339 --- /dev/null +++ b/sci-physics/lammps/files/lammps-python3.patch @@ -0,0 +1,11 @@ +--- lammps-11Apr15/python/lammps.py 2015-03-13 16:06:20.000000000 -0600 ++++ lammps-11Apr15-new/python/lammps.py 2015-04-13 09:40:43.000000000 -0600 +@@ -28,7 +28,7 @@ + except: + type,value,tb = sys.exc_info() + traceback.print_exception(type,value,tb) +- raise OSError,"Could not load LAMMPS dynamic library" ++ raise OSError("Could not load LAMMPS dynamic library") + + # if no ptr provided, create an instance of LAMMPS + # don't know how to pass an MPI communicator from PyPar diff --git a/sci-physics/lammps/files/python-shebang.patch b/sci-physics/lammps/files/python-shebang.patch new file mode 100644 index 000000000000..7dd45797d4ad --- /dev/null +++ b/sci-physics/lammps/files/python-shebang.patch @@ -0,0 +1,7 @@ +--- lammps-25Mar15/python/lammps.py 2015-03-13 16:06:20.000000000 -0600 ++++ lammps-25Mar15-new/python/lammps.py 2015-04-10 15:31:14.000000000 -0600 +@@ -1,3 +1,4 @@ ++#!/usr/bin/env python + # ---------------------------------------------------------------------- + # LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator + # http://lammps.sandia.gov, Sandia National Laboratories diff --git a/sci-physics/lammps/lammps-20150210.ebuild b/sci-physics/lammps/lammps-20150210.ebuild new file mode 100644 index 000000000000..f38c9d86e0fb --- /dev/null +++ b/sci-physics/lammps/lammps-20150210.ebuild @@ -0,0 +1,205 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils flag-o-matic fortran-2 multilib + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="doc examples gzip lammps-memalign mpi static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + sci-libs/voro++ + " +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi '' "-I../STUBS") \ + MPI_PATH=$(usex mpi '' '-L../STUBS') \ + MPI_LIB=$(usex mpi '' '-lmpi_stubs') \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die +} + +src_compile() { + # Prepare compiler flags. + append-cxxflags -fPIC -I../../src + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src stubs + + # Build packages + emake -C src yes-asphere + emake -C src yes-body + emake -C src yes-class2 + emake -C src yes-colloid + emake -C src yes-dipole + emake -C src yes-fld + #emake -C src yes-gpu + emake -C src yes-granular + # Need OpenKIM external dependency. + #emake -C src yes-kim + # Need Kokkos external dependency. + #emake -C src yes-kokkos + emake -C src yes-kspace + emake -C src yes-manybody + emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -j1 -C lib/meam -f Makefile.gfortran + emake -C src yes-misc + emake -C src yes-molecule + #emake -C src yes-mpiio + emake -C src yes-opt + emake -C src yes-peri + emake -C src yes-poems + lmp_emake -C lib/poems -f Makefile.g++ + emake -C src yes-reax + lmp_emake -j1 -C lib/reax -f Makefile.gfortran + emake -C src yes-replica + emake -C src yes-rigid + emake -C src yes-shock + emake -C src yes-snap + emake -C src yes-srd + emake -C src yes-voronoi + emake -C src yes-xtc + + emake -C src yes-user-eff + emake -C src yes-user-fep + use mpi && emake -C src yes-user-lb + emake -C src yes-user-phonon + emake -C src yes-user-sph + + if use mpi; then + emake -C src yes-user-atc + lmp_emake -C lib/atc -f Makefile.g++ + fi + + if use static-libs; then + # Build static library. + lmp_emake -C src makelib + lmp_emake -C src -f Makefile.lib serial + fi + + # Build shared library. + lmp_emake -C src makeshlib + lmp_emake -C src -f Makefile.shlib serial + + # Compile main executable. + lmp_emake -C src serial + + # Compile tools. + emake -C tools binary2txt chain micelle2d data2xmovie +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150515-r1.ebuild b/sci-physics/lammps/lammps-20150515-r1.ebuild new file mode 100644 index 000000000000..a44974b9a665 --- /dev/null +++ b/sci-physics/lammps/lammps-20150515-r1.ebuild @@ -0,0 +1,266 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150515.ebuild b/sci-physics/lammps/lammps-20150515.ebuild new file mode 100644 index 000000000000..0814be15b54b --- /dev/null +++ b/sci-physics/lammps/lammps-20150515.ebuild @@ -0,0 +1,266 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20150810.ebuild b/sci-physics/lammps/lammps-20150810.ebuild new file mode 100644 index 000000000000..313a8bd28a33 --- /dev/null +++ b/sci-physics/lammps/lammps-20150810.ebuild @@ -0,0 +1,266 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + case $1 in + 01) echo Jan + ;; + 02) echo Feb + ;; + 03) echo Mar + ;; + 04) echo Apr + ;; + 05) echo May + ;; + 06) echo Jun + ;; + 07) echo Jul + ;; + 08) echo Aug + ;; + 09) echo Sep + ;; + 10) echo Oct + ;; + 11) echo Nov + ;; + 12) echo Dec + ;; + *) echo unknown + ;; + esac +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE=$(tc-getAR) \ + CC=$(usex mpi "mpic++" "$(tc-getCXX)") \ + F90=$(usex mpi "mpif90" "$(tc-getFC)") \ + LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC=$(usex mpi "" "-I../STUBS") \ + MPI_PATH=$(usex mpi "" "-L../STUBS") \ + MPI_LIB=$(usex mpi "" "-lmpi_stubs") \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + lmp_emake -C src yes-asphere + lmp_emake -C src yes-body + lmp_emake -C src yes-class2 + lmp_emake -C src yes-colloid + lmp_emake -C src yes-coreshell + lmp_emake -C src yes-dipole + lmp_emake -C src yes-fld + #lmp_emake -C src yes-gpu + lmp_emake -C src yes-granular + # Need OpenKIM external dependency. + #lmp_emake -C src yes-kim + # Need Kokkos external dependency. + #lmp_emake -C src yes-kokkos + lmp_emake -C src yes-kspace + lmp_emake -C src yes-manybody + lmp_emake -C src yes-mc + lmp_emake -C src yes-meam + lmp_emake -C src yes-misc + lmp_emake -C src yes-molecule + #lmp_emake -C src yes-mpiio + lmp_emake -C src yes-opt + lmp_emake -C src yes-peri + lmp_emake -C src yes-poems + lmp_emake -C src yes-qeq + lmp_emake -C src yes-reax + lmp_emake -C src yes-replica + lmp_emake -C src yes-rigid + lmp_emake -C src yes-shock + lmp_emake -C src yes-snap + lmp_emake -C src yes-srd + lmp_emake -C src yes-voronoi + lmp_emake -C src yes-xtc + + if use mpi; then + lmp_emake -C src yes-user-atc + fi + lmp_emake -C src yes-user-eff + lmp_emake -C src yes-user-fep + use mpi && lmp_emake -C src yes-user-lb + lmp_emake -C src yes-user-phonon + lmp_emake -C src yes-user-sph +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20151106.ebuild b/sci-physics/lammps/lammps-20151106.ebuild new file mode 100644 index 000000000000..02f545428fa3 --- /dev/null +++ b/sci-physics/lammps/lammps-20151106.ebuild @@ -0,0 +1,212 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r1.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20151120.ebuild b/sci-physics/lammps/lammps-20151120.ebuild new file mode 100644 index 000000000000..02f545428fa3 --- /dev/null +++ b/sci-physics/lammps/lammps-20151120.ebuild @@ -0,0 +1,212 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r1.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20151207.ebuild b/sci-physics/lammps/lammps-20151207.ebuild new file mode 100644 index 000000000000..da77877d865d --- /dev/null +++ b/sci-physics/lammps/lammps-20151207.ebuild @@ -0,0 +1,216 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r1.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20151208.ebuild b/sci-physics/lammps/lammps-20151208.ebuild new file mode 100644 index 000000000000..231546ced558 --- /dev/null +++ b/sci-physics/lammps/lammps-20151208.ebuild @@ -0,0 +1,216 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r1.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20151209.ebuild b/sci-physics/lammps/lammps-20151209.ebuild new file mode 100644 index 000000000000..231546ced558 --- /dev/null +++ b/sci-physics/lammps/lammps-20151209.ebuild @@ -0,0 +1,216 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r1.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20151211.ebuild b/sci-physics/lammps/lammps-20151211.ebuild new file mode 100644 index 000000000000..231546ced558 --- /dev/null +++ b/sci-physics/lammps/lammps-20151211.ebuild @@ -0,0 +1,216 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +DEPEND=" + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + gzip? ( app-arch/gzip ) + sci-libs/voro++ + python? ( ${PYTHON_DEPS} ) + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r1.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20160115.ebuild b/sci-physics/lammps/lammps-20160115.ebuild new file mode 100644 index 000000000000..13530ea5d3dc --- /dev/null +++ b/sci-physics/lammps/lammps-20160115.ebuild @@ -0,0 +1,217 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r1.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20160122.ebuild b/sci-physics/lammps/lammps-20160122.ebuild new file mode 100644 index 000000000000..13530ea5d3dc --- /dev/null +++ b/sci-physics/lammps/lammps-20160122.ebuild @@ -0,0 +1,217 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r1.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20160216.ebuild b/sci-physics/lammps/lammps-20160216.ebuild new file mode 100644 index 000000000000..f7063b8b2bdf --- /dev/null +++ b/sci-physics/lammps/lammps-20160216.ebuild @@ -0,0 +1,217 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r2.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20160301.ebuild b/sci-physics/lammps/lammps-20160301.ebuild new file mode 100644 index 000000000000..f7063b8b2bdf --- /dev/null +++ b/sci-physics/lammps/lammps-20160301.ebuild @@ -0,0 +1,217 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r2.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20160310.ebuild b/sci-physics/lammps/lammps-20160310.ebuild new file mode 100644 index 000000000000..f7063b8b2bdf --- /dev/null +++ b/sci-physics/lammps/lammps-20160310.ebuild @@ -0,0 +1,217 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r2.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20160314.ebuild b/sci-physics/lammps/lammps-20160314.ebuild new file mode 100644 index 000000000000..f7063b8b2bdf --- /dev/null +++ b/sci-physics/lammps/lammps-20160314.ebuild @@ -0,0 +1,217 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r2.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20160321.ebuild b/sci-physics/lammps/lammps-20160321.ebuild new file mode 100644 index 000000000000..f7063b8b2bdf --- /dev/null +++ b/sci-physics/lammps/lammps-20160321.ebuild @@ -0,0 +1,217 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/blas + virtual/lapack + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r2.patch" + epatch "${FILESDIR}/python-shebang.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20160407.ebuild b/sci-physics/lammps/lammps-20160407.ebuild new file mode 100644 index 000000000000..4acd225c5e4e --- /dev/null +++ b/sci-physics/lammps/lammps-20160407.ebuild @@ -0,0 +1,218 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + virtual/blas + virtual/lapack + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + # Patch python. + epatch "${FILESDIR}/lammps-python3-r2.patch" + epatch "${FILESDIR}/python-shebang.patch" + epatch "${FILESDIR}/gcc-6.patch" +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20160730.ebuild b/sci-physics/lammps/lammps-20160730.ebuild new file mode 100644 index 000000000000..57af769d1ae1 --- /dev/null +++ b/sci-physics/lammps/lammps-20160730.ebuild @@ -0,0 +1,220 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + virtual/blas + virtual/lapack + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +PATCHES=( + "${FILESDIR}/fm_exp.patch" +) + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + eapply "${PATCHES[@]}" + eapply_user +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20170109.ebuild b/sci-physics/lammps/lammps-20170109.ebuild new file mode 100644 index 000000000000..9daef6aa6809 --- /dev/null +++ b/sci-physics/lammps/lammps-20170109.ebuild @@ -0,0 +1,220 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + virtual/blas + virtual/lapack + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +PATCHES=( + "${FILESDIR}/fm_exp.patch" +) + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + eapply "${PATCHES[@]}" + eapply_user +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain data2xmovie micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/data2xmovie + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dohtml -r doc/* + fi +} diff --git a/sci-physics/lammps/lammps-20170706.ebuild b/sci-physics/lammps/lammps-20170706.ebuild new file mode 100644 index 000000000000..46587b5d81cb --- /dev/null +++ b/sci-physics/lammps/lammps-20170706.ebuild @@ -0,0 +1,219 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) + +inherit eutils flag-o-matic fortran-2 multilib python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc examples gzip lammps-memalign mpi python static-libs" + +# blas/lapack is needed by the ATC package which is only built with MPI. +DEPEND=" + gzip? ( app-arch/gzip ) + mpi? ( + virtual/mpi + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + virtual/blas + virtual/lapack + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +PATCHES=( + "${FILESDIR}/fm_exp.patch" +) + +lmp_emake() { + local LAMMPS_INCLUDEFLAGS + LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" + LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" + + # The lammps makefile uses CC to indicate the C++ compiler. + emake \ + ARCHIVE="$(tc-getAR)" \ + CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ + LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ + CCFLAGS="${CXXFLAGS}" \ + F90FLAGS="${FCFLAGS}" \ + LINKFLAGS="${LDFLAGS}" \ + LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ + MPI_INC="$(usex mpi "" "-I../STUBS")" \ + MPI_PATH="$(usex mpi "" "-L../STUBS")" \ + MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ + user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ + "$@" +} + +lmp_activate_packages() { + # Build packages + local packages=( yes-asphere yes-body yes-class2 yes-colloid \ + yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ + yes-manybody yes-mc yes-meam yes-misc \ + $(usex mpi "yes-user-atc" "") \ + yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ + yes-replica yes-rigid yes-shock yes-snap yes-srd \ + yes-user-eff yes-user-fep \ + $(usex mpi "yes-user-lb" "") \ + yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) + + for p in ${packages[@]}; do + lmp_emake -C src ${p} + done +} + +lmp_build_packages() { + lmp_emake -C lib/meam -j1 -f Makefile.gfortran + lmp_emake -C lib/poems -f Makefile.g++ + lmp_emake -C lib/reax -j1 -f Makefile.gfortran + use mpi && lmp_emake -C lib/atc -f Makefile.g++ +} + +lmp_clean_packages() { + lmp_emake -C lib/meam -f Makefile.gfortran clean + lmp_emake -C lib/poems -f Makefile.g++ clean + lmp_emake -C lib/reax -f Makefile.gfortran clean + use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean +} + +src_prepare() { + # Fix inconsistent use of SHFLAGS. + sed -i \ + -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ + -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ + lib/voronoi/Makefile.lammps || die + + # Fix missing .so name. + sed -i \ + -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ + src/MAKE/Makefile.serial || die + + # Fix makefile in tools. + sed -i \ + -e 's:g++:$(CXX) $(CXXFLAGS):' \ + -e 's:gcc:$(CC) $(CCFLAGS):' \ + -e 's:ifort:$(FC) $(FCFLAGS):' \ + tools/Makefile || die + + eapply "${PATCHES[@]}" + eapply_user +} + +src_compile() { + # Fix atc... + append-cxxflags -I../../src + + # Acticate packages. + elog "Activating lammps packages..." + lmp_activate_packages + + # STUBS/mpi.c is using '#include <mpi.h>' now instead of '#include + # "mpi.h"' which requires an additional '-I.'. + append-cxxflags -I. + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + if use static-libs; then + # Build static library. + elog "Building static library..." + lmp_emake -C src mode=lib serial + fi + + # Clean out packages (that's not done by the build system with the clean + # target), so we can rebuild the packages with -fPIC. + elog "Cleaning packages..." + lmp_clean_packages + + # The build system does not rebuild the packages with -fPIC, adding flag + # manually. + append-cxxflags -fPIC + append-fflags -fPIC + + # Compile stubs for serial version. + use mpi || lmp_emake -C src mpi-stubs + + elog "Building packages..." + lmp_build_packages + + # Build shared library. + elog "Building shared library..." + lmp_emake -C src mode=shlib serial + + # Compile main executable. The shared library is always built, and + # mode=shexe is simply a way to re-use the object files built in the + # "shlib" step when linking the executable. The executable is not actually + # using the shared library. If we have built the static library, then we + # link that into the executable. + elog "Linking executable..." + if use static-libs; then + lmp_emake -C src mode=exe serial + else + lmp_emake -C src mode=shexe serial + fi + + # Compile tools. + elog "Building tools..." + lmp_emake -C tools binary2txt chain micelle2d +} + +src_install() { + use static-libs && newlib.a src/liblammps_serial.a liblammps.a + newlib.so src/liblammps_serial.so liblammps.so.0.0.0 + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so + dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 + newbin src/lmp_serial lmp + dobin tools/binary2txt + dobin tools/chain + dobin tools/micelle2d + # Don't forget to add header files of optional packages as they are added + # to this ebuild. There may also be .mod files from Fortran based + # packages. + insinto "/usr/include/${PN}" + doins -r src/*.h lib/meam/*.mod + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r examples/* + fi + + dodoc README + if use doc; then + dodoc doc/Manual.pdf + dodoc -r doc/. + fi +} diff --git a/sci-physics/lammps/lammps-20170901.ebuild b/sci-physics/lammps/lammps-20170901.ebuild new file mode 100644 index 000000000000..06b90c07a4b7 --- /dev/null +++ b/sci-physics/lammps/lammps-20170901.ebuild @@ -0,0 +1,129 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) + +inherit cmake-utils fortran-2 python-r1 + +convert_month() { + local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) + echo ${months[${1#0}]} +} + +MY_PV="patch_$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:0:4}" +MY_P="${PN}-${MY_PV}" + +DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" +HOMEPAGE="http://lammps.sandia.gov/" +SRC_URI="https://github.com/lammps/lammps/archive/${MY_PV}.tar.gz -> ${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="cuda examples gzip lammps-memalign mpi netcdf python test" + +DEPEND=" + app-arch/gzip + media-libs/libpng:0 + sys-libs/zlib + mpi? ( + virtual/mpi + sci-libs/hdf5[mpi] + ) + python? ( ${PYTHON_DEPS} ) + sci-libs/voro++ + virtual/blas + virtual/lapack + sci-libs/fftw:3.0 + netcdf? ( sci-libs/netcdf ) + cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) + dev-cpp/eigen:3 + " +RDEPEND="${DEPEND}" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}/cmake" + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DENABLE_MPI=$(usex mpi) + -DENABLE_GPU=$(usex cuda) + -DENABLE_TESTING=$(usex test) + -DENABLE_ASPHERE=ON + -DENABLE_BODY=ON + -DENABLE_CLASS2=ON + -DENABLE_COLLOID=ON + -DENABLE_COMPRESS=ON + -DENABLE_CORESHELL=ON + -DENABLE_DIPOLE=ON + -DENABLE_GRANULAR=ON + -DENABLE_KSPACE=ON + -DFFT=FFTW3 + -DENABLE_MANYBODY=ON + -DENABLE_MC=ON + -DENABLE_MEAM=ON + -DENABLE_MISC=ON + -DLAMMPS_XDR=ON #630444 + -DENABLE_MOLECULE=ON + -DENABLE_PERI=ON + -DENABLE_QEQ=ON + -DENABLE_REAX=ON + -DENABLE_REPLICA=ON + -DENABLE_RIGID=ON + -DENABLE_SHOCK=ON + -DENABLE_SNAP=ON + -DENABLE_SRD=ON + -DENABLE_PYTHON=ON + -DENABLE_MPIIO=$(usex mpi) + -DENABLE_VORONOI=ON + -DENABLE_USER-ATC=ON + -DENABLE_USER-AWPMD=ON + -DENABLE_USER-CGDNA=ON + -DENABLE_USER-CGSDK=ON + -DENABLE_USER-COLVARS=ON + -DENABLE_USER-DIFFRACTION=ON + -DENABLE_USER-DPD=ON + -DENABLE_USER-DRUDE=ON + -DENABLE_USER-EFF=ON + -DENABLE_USER-FEP=ON + -DENABLE_USER-H5MD=$(usex mpi) + -DENABLE_USER-LB=$(usex mpi) + -DENABLE_USER-MANIFOLD=ON + -DENABLE_USER-MEAMC=ON + -DENABLE_USER-MGPT=ON + -DENABLE_USER-MISC=ON + -DENABLE_USER-MOLFILE=ON + -DENABLE_USER-NETCDF=$(usex netcdf) + -DENABLE_USER-PHONON=ON + -DENABLE_USER-QTB=ON + -DENABLE_USER-REAXC=ON + -DENABLE_USER-SMD=ON + -DENABLE_USER-SMTBQ=ON + -DENABLE_USER-SPH=ON + -DENABLE_USER-TALLY=ON + ) + cmake-utils_src_configure +} + +src_install() { + cmake-utils_src_install + + local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" + insinto "/${LAMMPS_POTENTIALS}" + doins "${S}"/../potentials/* + echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps + doenvd 99lammps + + # Install python script. + use python && python_foreach_impl python_domodule "${S}"/../python/lammps.py + + if use examples; then + local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" + insinto "${LAMMPS_EXAMPLES}" + doins -r "${S}"/../examples/* + fi +} diff --git a/sci-physics/lammps/metadata.xml b/sci-physics/lammps/metadata.xml new file mode 100644 index 000000000000..8f2d53d1312a --- /dev/null +++ b/sci-physics/lammps/metadata.xml @@ -0,0 +1,32 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <longdescription lang="en"> + LAMMPS is a classical molecular dynamics code, and an acronym for + Large-scale Atomic/Molecular Massively Parallel Simulator. + + LAMMPS has potentials for soft materials (biomolecules, polymers) and + solid-state materials (metals, semiconductors) and coarse-grained or + mesoscopic systems. It can be used to model atoms or, more generically, + as a parallel particle simulator at the atomic, meso, or continuum + scale. + + LAMMPS runs on single processors or in parallel using message-passing + techniques and a spatial-decomposition of the simulation domain. The + code is designed to be easy to modify or extend with new functionality. + </longdescription> + <use> + <flag name="lammps-memalign">Enables the use of the posix_memalign() + call instead of malloc() when large chunks or memory are allocated + by LAMMPS. Aliengnment is on 16 byte boundaries.</flag> + <flag name="cuda">Enable cuda non-bonded kernels</flag> + </use> + <maintainer type="person"> + <email>nicolasbock@gentoo.org</email> + <name>Nicolas Bock</name> + </maintainer> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-physics/lhapdf/Manifest b/sci-physics/lhapdf/Manifest new file mode 100644 index 000000000000..1ddbf94fe987 --- /dev/null +++ b/sci-physics/lhapdf/Manifest @@ -0,0 +1,12 @@ +DIST CT10.LHgrid 21081519 SHA256 e858cec1f80420698ef3ae1249d5414977ff79ce512fba00af91513f2b7e05a2 SHA512 4196b0899dc7f5803608d9328872b942393d5f5103e8d50a53b35af6f8bac509adbbe83c363ab33a5fbfab3c33156e8ae46131939ad5a8642c558ff209630820 WHIRLPOOL 7939478bdef6aa0e369738a85891188774e92b9e5b4ad5c7ad5089ce824fdeec73ddd726cf3e00ff732edfc3664ac9a263d2758f9f3dc2637de329d837028332 +DIST LHAPDF-6.1.6.tar.gz 696608 SHA256 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fe04ac08f3f0b7ed98369d16b2cdf053d980211f3d4bb9a17d3e3feb3cc3dc6e2999fd16cc533ba7250e47b258aa10bed90d7f62007faac064112c5f9b79fe4e WHIRLPOOL eec114acad95a2925d5eb6eed590de651501bcff9e6f273ba13ccc76f0922c7593303fa9090956d75d82575ca0cea73aa36d9759176425a20184acc7890a6ed0 diff --git a/sci-physics/lhapdf/lhapdf-5.9.1.ebuild b/sci-physics/lhapdf/lhapdf-5.9.1.ebuild new file mode 100644 index 000000000000..2c46b3230d45 --- /dev/null +++ b/sci-physics/lhapdf/lhapdf-5.9.1.ebuild @@ -0,0 +1,91 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit versionator + +MY_PV=$(get_version_component_range 1-3 ${PV}) +MY_PF=${PN}-${MY_PV} + +DESCRIPTION="Les Houches Parton Density Function unified library" +HOMEPAGE="http://projects.hepforge.org/lhapdf/" +SRC_URI="http://www.hepforge.org/archive/lhapdf/${MY_PF}.tar.gz + test? ( + http://lhapdf.hepforge.org/svn/pdfsets/5/CT10.LHgrid + http://lhapdf.hepforge.org/svn/pdfsets/5/cteq61.LHgrid + http://lhapdf.hepforge.org/svn/pdfsets/5/MRST2004nlo.LHgrid + http://lhapdf.hepforge.org/svn/pdfsets/5/cteq61.LHpdf + octave? ( http://lhapdf.hepforge.org/svn/pdfsets/5/cteq5l.LHgrid ) )" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="cxx doc examples octave python test" + +RDEPEND="octave? ( sci-mathematics/octave )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[latex] ) + python? ( dev-lang/swig )" + +S="${WORKDIR}/${MY_PF}" + +src_prepare() { + # do not create extra latex docs + sed -i \ + -e 's/GENERATE_LATEX.*=YES/GENERATE_LATEX = NO/g' \ + ccwrap/Doxyfile || die +} + +src_configure() { + local myconf="--enable-ccwrap" + ! use octave && ! use cxx && myconf="--disable-ccwrap" + econf \ + $(use_enable cxx old-ccwrap ) \ + $(use_enable octave) \ + $(use_enable python pyext) \ + $(use_enable doc doxygen) \ + ${myconf} +} + +src_test() { + # need to make a bogus link for octave test + if use octave; then + # remove line that tries to read non-existent help file + sed -i -e '/help/d' octave/lhapdf-octave-example1.m \ + || die 'sed octave example failed' + fi + ln -s "${DISTDIR}" PDFsets + LHAPATH="${PWD}/PDFsets" \ + LD_LIBRARY_PATH="${PWD}/lib/.libs:${LD_LIBRARY_PATH}" \ + emake check +} + +src_install() { + emake DESTDIR="${D}" install + dodoc README TODO AUTHORS ChangeLog + + # leftover + rm -rf "${D}"/usr/share/${PN}/doc || die + if use doc && use cxx; then + # default doc install buggy + insinto /usr/share/doc/${PF} + doins -r ccwrap/doxy/html + fi + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins examples/*.{f,cc} + fi +} + +pkg_postinst() { + elog "To install data files, you have to run as root:" + elog "${ROOT}usr/bin/lhapdf-getdata --dest=${ROOT}usr/share/lhapdf/PDFsets --all" +} + +pkg_postrm() { + if [ -d "${ROOT}usr/share/lhapdf" ]; then + ewarn "The data directory has not been removed, probably because" + ewarn "you still have installed data files." + fi +} diff --git a/sci-physics/lhapdf/lhapdf-6.1.6.ebuild b/sci-physics/lhapdf/lhapdf-6.1.6.ebuild new file mode 100644 index 000000000000..d5d30b308cd0 --- /dev/null +++ b/sci-physics/lhapdf/lhapdf-6.1.6.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_IN_SOURCE_BUILD=yes +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) + +inherit versionator autotools-utils distutils-r1 + +MY_PV=$(get_version_component_range 1-3 ${PV}) +MY_PF=LHAPDF-${MY_PV} + +DESCRIPTION="Les Houches Parton Density Function unified library" +HOMEPAGE="http://lhapdf.hepforge.org/" +SRC_URI="http://www.hepforge.org/archive/lhapdf/${MY_PF}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +IUSE="doc examples python static-libs" +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +RDEPEND=" + dev-libs/boost:0= + python? ( ${PYTHON_DEPS} )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[latex] )" + +S="${WORKDIR}/${MY_PF}" + +src_configure() { + autotools-utils_src_configure $(use_enable python) + if use python; then + cd "${S}/wrappers/python" && distutils-r1_src_prepare + fi +} + +src_compile() { + autotools-utils_src_compile all $(use doc && echo doxy) + if use python; then + cd "${S}/wrappers/python" && distutils-r1_src_compile + fi +} + +src_test() { + autotools-utils_src_compile -C tests +} + +src_install() { + autotools-utils_src_install + use doc && dohtml -r doc/doxygen/* + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins examples/*.cc + fi + if use python; then + cd "${S}/wrappers/python" && distutils-r1_src_install + fi +} + +pkg_postinst() { + elog "Download data files from:" + elog "http://www.hepforge.org/archive/${PN}/pdfsets/$(get_version_component_range 1-2 ${PV})" + elog "and untar them into ${EROOT%/}/usr/share/LHAPDF" +} diff --git a/sci-physics/lhapdf/metadata.xml b/sci-physics/lhapdf/metadata.xml new file mode 100644 index 000000000000..e1748d9c6923 --- /dev/null +++ b/sci-physics/lhapdf/metadata.xml @@ -0,0 +1,24 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + Les Houches Parton Density Function (LHAPDF) + provides a unified and easy to use interface to modern PDF + sets. It is designed to work not only with individual PDF sets but + also with the more recent multiple "error" sets. It can be viewed as + the successor to PDFLIB, incorporating many of the older sets found in + the latter, including pion and photon PDFs. In LHAPDF the computer + code and input parameters/grids are separated thus allowing more easy + updating and no limit to the expansion possibilities. The code and + data sets can be downloaded together or individually as desired. From + version 4.1 onwards a configuration script facilitates the + installation of LHAPDF. +</longdescription> +<use> + <flag name="octave">Add bindings for <pkg>sci-mathematics/octave</pkg></flag> +</use> +</pkgmetadata> diff --git a/sci-physics/lightspeed/Manifest b/sci-physics/lightspeed/Manifest new file mode 100644 index 000000000000..82f1656b309c --- /dev/null +++ b/sci-physics/lightspeed/Manifest @@ -0,0 +1,10 @@ +AUX lightspeed-1.2a-autoconf.patch 592 SHA256 035dba75084fcc884146fe7e60e226d6f5daa2b63e3a1ece9d6ee79f45ca4e69 SHA512 e0bf6da5617ddc59159ad07ef82f6464f495d7e3377ecdfcd1fb4144a501c8d2e6857da239e159f04b27790d921a356bf46a5322088a3bcf786a19e32a4f8e81 WHIRLPOOL 2ce966abfb156d98470c79fabad7d523be64d81d3abd4b49d6f63552e1f28138c4381a681406674c339c7fdd73861af9e8c8d35b12862ad3ba7cf062c291928a +AUX lightspeed-1.2a-libpng15.patch 579 SHA256 29f01eb148358857208152a4a648833ef9091c5fc349017ccf4f53ac363b3f70 SHA512 ca876b167e538f014176143e0b42001b90a96a3e560a5b641ef10c2080a5f86b0d786b53e975a52dee8044bce24401e5f2a2d7e6bf08946938b4dfb379cac319 WHIRLPOOL 9e473ea906045cdb5b256b0bfec9c400ef5f76fc7d19a6896155368222924a02c62eaff39a3e72f2d3924ec44266acf75b76846cb07b9e2a2adef7e3b0e6c660 +DIST lightspeed-1.2a.tar.gz 163764 SHA256 a8752acce625436b699b4d3c1ab479bd4116673784f17e527a3e37374abc4f4b SHA512 d936e54fcf3f5a59b9d4f0ce7777755d8262a71634f9fca0f5f312a2fbf9f5b65d3fe6628d1547cf88ac8a02243712e838e7d84c5e61a6a318484545896b46ef WHIRLPOOL 0dd6142a32b8c16508bb0fe333683ed8c82c1f461d92f1959e466c3098b56b9f4fa07f285ea754a97b149b60736cb84ff4dde61dd375318f6aa8ec2d0cf17b20 +DIST lightspeed_1.2a-7.diff.gz 379281 SHA256 1cbc562d1ad10afb9598510537cd64fdbbb1f9bd12ac27c5180a668bbc548a58 SHA512 f0a9999750470d45f9b7b6f3339fff5d75b461f8f937e16e784905e85a29fc5587b6b203f151f0a8075ea39b255f6d48c4ca78c48703f4ab3cd2d18af7a4df50 WHIRLPOOL 3cc70f8b1f27229fd510e58b3780f4904d521f192dd9cda7f27ab7feaf70aea0684661d1addcd1482ac36a20fd697f8ce55d81cf1f1d199552a657e35a09046f +DIST objects-1.tar.gz 767805 SHA256 dd82324796b9f114c652220d069b131321a129ea41ef99cc0b8cbdf8c666bf5b SHA512 cb8c2d5c323b92b87dfe2bfa8f7f37c46b381c4611d5ca2f645a16943339b90850615647f6edc21ae28a28792b0f071e8cac9779dbfdbf6bf928498cdd451231 WHIRLPOOL 07853e37aa761beb5a94fbdce11baeb78ef9c652dbf32c85129cf75af5fe4dae8608fc51f2ccdf0ae612e904c36713ad9a304234234a8e274ae43d09fe068884 +EBUILD lightspeed-1.2a-r1.ebuild 1594 SHA256 bd848bfefff779d22fcbc009a031c9b2d0de08d28861e54efcdb25737a9e3536 SHA512 830bc2d5c1dbdba5b3371a27dd378190a5dcc3c353432c8345d53888d9371860648746acb1131ea0518251b54cd4e3ac3a817f3d592aef4569136712af3cf855 WHIRLPOOL 427712212decfa4e41de703b32cbba2f53dfa296f2d507b8187ac97522c22966a907a08cae60f0b401ace24d4b675bff8ac6a75533683b603f9b7f524a65c736 +EBUILD lightspeed-1.2a-r2.ebuild 1524 SHA256 414d8866f2eb2bc0523af67c5b92e09e613f78167231fae1b50cd8d497869589 SHA512 7e69381fa323b8e0689b749f0f77e720d3034d6de81b91178e543d83cd0e92dd1bdbf13b7272546a4a557fb6673f7ab4e01c8d19f82da58b86dc15fe78e6f909 WHIRLPOOL 9390c72ea6e77a216c5d7bed6359524691ee77f65930a711c05e2292f183e5d625c0a435692ffd137f83a77eb33247aeb51fe7c086a3485f665dc4e1ea3dc241 +MISC ChangeLog 2832 SHA256 ea8140b976f855a60cdd1b0d40303a20dffcc77db1504b74f98f1e4fbd64868e SHA512 42443d083a5a47da87528a0d1dfa52bb95cdbe8ff9fd07a2d3cad85165dbf40cc4428ad3e6e3f5e28c7a141acb7fe68c2e2d2b9438363e8e88d4c72e4ce43ec5 WHIRLPOOL b0d08ce4233e0feb862fd4419be0040c7cea9896a7146bec88aa61657da46ef700a297149626fac0218c9f340e31d152be77dd9eb154a6e8a174a9afd28510c3 +MISC ChangeLog-2015 3730 SHA256 400beec964bc4527ca1b37190d73e2f14b8f2b46b191a753f4812be454869d34 SHA512 24092489e610d7bcee8b51a8c17126978a925c243b89d8835eb2a566e4f3b04070a4fab7f043599e3ee0e98c094ba1bc6cc25d169bd0431bc8f2018a4b6d9796 WHIRLPOOL ae4137a5c6c5fa8abc8d12337d8dceb356bf7e8d2c46c9e7d1fe66c0194da9ea6aaa167b1b83fd7b8c2093f70c64341b7171f5cef58218f069a525b2c4786eba +MISC metadata.xml 763 SHA256 c96eda595305a44153d750c19a2c5fc6fdef6ad7b94471fa7a62ea3c959a1636 SHA512 d33c67d677850f7eaf12b4086c66a49940259b5553470a9f3c9ca56279f06a99eec12384e75815e32e7953ac3275ce01e03582d35a9fa3de21e5b3380d02d08f WHIRLPOOL cfd178fd81c49f2d59cfba6ef1c23321aa8f73a68adf40e52f5bebeb656d24a0b2e9dc7617dedb356283b225269d8faefe5e6d5376ba819899febfde23fbb0cd diff --git a/sci-physics/lightspeed/files/lightspeed-1.2a-autoconf.patch b/sci-physics/lightspeed/files/lightspeed-1.2a-autoconf.patch new file mode 100644 index 000000000000..c6b2f9fda711 --- /dev/null +++ b/sci-physics/lightspeed/files/lightspeed-1.2a-autoconf.patch @@ -0,0 +1,16 @@ +diff --git a/configure.in b/configure.in +index 1cfbcba..5363c05 100644 +--- a/configure.in ++++ b/configure.in +@@ -54,9 +54,8 @@ if test "x$with_gtk" != "x1" -a "$gtkmorph_gtk" = "" ; then + AC_MSG_NOTICE([ Testing for GTK 2 skipped]) + fi + if test "x$with_gtk" != "x2" -a "$version_of_gtk" = "" ; then +- AM_PATH_GTK(1.0.1, , [AC_MSG_ERROR([Cannot find proper GTK+ version])]) +- version_of_gtk=gtk1 +- AC_DEFINE(HAVE_GTK1,1,"compiled with GTK 1 and GtkGLArea ") ++ AC_MSG_ERROR([Cannot find proper GTK+ version]) ++ exit 1 + fi + + AM_CONDITIONAL(COND_GTK1, test "$version_of_gtk" = "gtk1" ) diff --git a/sci-physics/lightspeed/files/lightspeed-1.2a-libpng15.patch b/sci-physics/lightspeed/files/lightspeed-1.2a-libpng15.patch new file mode 100644 index 000000000000..db0d0faa1123 --- /dev/null +++ b/sci-physics/lightspeed/files/lightspeed-1.2a-libpng15.patch @@ -0,0 +1,19 @@ +--- a/src/snapshot.c ++++ b/src/snapshot.c +@@ -26,6 +26,7 @@ + #include "lightspeed.h" + + #ifdef HAVE_LIBPNG ++#include <zlib.h> + #include <png.h> + static int write_png( int message, const void *data ); + #endif +@@ -305,7 +306,7 @@ + return -1; + png_write_s = png_create_write_struct( PNG_LIBPNG_VER_STRING, NULL, NULL, NULL ); + png_info_s = png_create_info_struct( png_write_s ); +- if (setjmp( png_write_s->jmpbuf )) { ++ if (setjmp( png_jmpbuf( png_write_s ) )) { + /* Error writing file */ + png_destroy_write_struct( &png_write_s, &png_info_s ); + fclose( png_fp ); diff --git a/sci-physics/lightspeed/lightspeed-1.2a-r1.ebuild b/sci-physics/lightspeed/lightspeed-1.2a-r1.ebuild new file mode 100644 index 000000000000..947d85f9cfd7 --- /dev/null +++ b/sci-physics/lightspeed/lightspeed-1.2a-r1.ebuild @@ -0,0 +1,80 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=4 + +inherit autotools eutils + +DEB_PATCH="${PN}_${PV}-7" +DESCRIPTION="OpenGL interactive relativistic simulator" +HOMEPAGE="http://lightspeed.sourceforge.net/" +SRC_URI=" + mirror://sourceforge/${PN}/${P}.tar.gz + mirror://sourceforge/${PN}/objects-1.tar.gz + mirror://debian/pool/main/${PN:0:1}/${PN}/${DEB_PATCH}.diff.gz" + +LICENSE="LGPL-2.1" +SLOT="0" +KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux" + +IUSE="nls truetype" +LANGS="es" +for i in ${LANGS}; do + IUSE="${IUSE} linguas_${i}" +done + +RDEPEND=" + media-libs/libpng + media-libs/tiff + virtual/opengl + x11-libs/gtkglext + x11-libs/gtkglarea:2 + x11-libs/gtk+:2 + x11-libs/libXmu + truetype? ( media-libs/ftgl )" + +DEPEND="${RDEPEND} + virtual/pkgconfig" + +S2="${WORKDIR}/objects" + +src_prepare() { + epatch "${WORKDIR}/${DEB_PATCH}.diff" + epatch \ + "${FILESDIR}"/${P}-autoconf.patch \ + "${FILESDIR}"/${P}-libpng15.patch + eautoreconf +} + +src_configure() { + econf \ + --with-gtk=2 \ + $(use_enable nls) \ + $(use_with truetype ftgl) +} + +src_compile() { + emake + local i + for i in ${LANGS}; do + use linguas_${i} && emake ${i}.gmo + done +} + +src_install() { + default + newicon src/icon.xpm lightspeed.xpm + make_desktop_entry ${PN} "Light Speed! Relativistic Simulator" + newdoc debian/changelog ChangeLog.Debian + cd ${S2} + newdoc README objects-README + insinto /usr/share/${PN} + doins *.3ds *.lwo +} + +pkg_postinst() { + elog + elog "Some 3d models have been placed in /usr/share/${PN}" + elog "You can load them in Light Speed! from the File menu." + elog +} diff --git a/sci-physics/lightspeed/lightspeed-1.2a-r2.ebuild b/sci-physics/lightspeed/lightspeed-1.2a-r2.ebuild new file mode 100644 index 000000000000..f9e752e9767e --- /dev/null +++ b/sci-physics/lightspeed/lightspeed-1.2a-r2.ebuild @@ -0,0 +1,75 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools eutils + +DEB_PATCH="${PN}_${PV}-7" +DESCRIPTION="OpenGL interactive relativistic simulator" +HOMEPAGE="http://lightspeed.sourceforge.net/" +SRC_URI=" + mirror://sourceforge/${PN}/${P}.tar.gz + mirror://sourceforge/${PN}/objects-1.tar.gz + mirror://debian/pool/main/${PN:0:1}/${PN}/${DEB_PATCH}.diff.gz" + +LICENSE="LGPL-2.1" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" + +IUSE="nls truetype l10n_es" + +RDEPEND=" + media-libs/libpng:0= + media-libs/tiff:0 + virtual/opengl + x11-libs/gtkglext + x11-libs/gtkglarea:2 + x11-libs/gtk+:2 + x11-libs/libXmu + truetype? ( media-libs/ftgl )" + +DEPEND="${RDEPEND} + virtual/pkgconfig" + +PATCHES=( + "${WORKDIR}/${DEB_PATCH}.diff" + "${FILESDIR}"/${P}-autoconf.patch + "${FILESDIR}"/${P}-libpng15.patch +) + +src_prepare() { + default + mv configure.{in,ac} || die + eautoreconf +} + +src_configure() { + econf \ + --with-gtk=2 \ + $(use_enable nls) \ + $(use_with truetype ftgl) +} + +src_compile() { + emake + use l10n_es && emake es.gmo +} + +src_install() { + default + newicon src/icon.xpm lightspeed.xpm + make_desktop_entry ${PN} "Light Speed! Relativistic Simulator" + newdoc debian/changelog ChangeLog.Debian + cd "${WORKDIR}/objects" || die + newdoc README objects-README + insinto /usr/share/${PN} + doins *.3ds *.lwo +} + +pkg_postinst() { + elog + elog "Some 3d models have been placed in /usr/share/${PN}" + elog "You can load them in Light Speed! from the File menu." + elog +} diff --git a/sci-physics/lightspeed/metadata.xml b/sci-physics/lightspeed/metadata.xml new file mode 100644 index 000000000000..49af49355b38 --- /dev/null +++ b/sci-physics/lightspeed/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + Light Speed! is an OpenGL-based program developed to illustrate the + effects of special relativity on the appearance of moving + objects. The moving object is, by default, a geometric lattice. 3D + Studio and LightWave 3D objects may be imported as well. Best of + all, the simulator is completely interactive, rendering the exotic + distortions in real-time. +</longdescription> + <upstream> + <remote-id type="sourceforge">lightspeed</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/looptools/Manifest b/sci-physics/looptools/Manifest new file mode 100644 index 000000000000..231d88f7070d --- /dev/null +++ b/sci-physics/looptools/Manifest @@ -0,0 +1,10 @@ +AUX looptools-2.10-makefile.patch 2441 SHA256 7d30eab6263251a27ff069f7888fe1c4b4fed60809f2ff0ba10d4bbcb3cb93f9 SHA512 2fefd3ccce9568481871166befffd0cfe08e9dcb5c9498eb6acdcfcf35d94148832ec23f33e258279a8e3a152e0a7c265be8ef3e3f349259ef2e7e2640381280 WHIRLPOOL 63c83d9118125bba31bed3b5480ee9903e40468ef4a5ed7474a4dad4c456467712e8568a9be9840e8f86f2bdbb8fe09850373a74eed4de5f605e275b341dc1f7 +AUX looptools-2.8-makefile.patch 2375 SHA256 4233d14f16609972b75df4aafdd0974254a4db6e82236435aaa27a0f4990ed28 SHA512 e0f0f4fce94468f9b07deececb89c6e64250692b343ee1a8f29d85da724cf2cc443e6363414e5eb0af88f0135b9a7e2311e14d7d1001c9bd57e127c7ba808ae0 WHIRLPOOL e526400922e9ed770a08f840c5babf3be32327c0719360f0305912fdb96cf4dcb887391f906cdb5f82ab7c6f9853c2220c6aa982794f8123cef6df3e7a55ac20 +DIST LoopTools-2.12.tar.gz 545153 SHA256 df04d944de15ec73665edaf76f655d1db797cbc02b54baa7664ac761ecfa2f70 SHA512 70726493bd138fb80b85a46955fbe28b7f1432d9b67a100fe3ff74c2fa22232a07e461a6742745b0ead81793bb64b81cc4265d09b91fa048e7bdd32cf6956b27 WHIRLPOOL af3abaf31a4a868e0f65bdb0b21405c413c470063e4c8130e31b2a9e05a4f0e65e9999323e3cdf0b4277e48e84d767288852e984d486468abab3aaa664f66879 +DIST LoopTools-2.13.tar.gz 549005 SHA256 b609720e8ab68d4f4e0c01c19abffff5915fe593362ddbcdd68260c780ef475e SHA512 eadde36d8bf340061f5b50c9928bce055ef098d0cee11abe9a834c158a7758b09f4290dddbba922a41b0281fbdaecc80ba877cb6968b0448f3487324e220ec62 WHIRLPOOL 360aedd396f7a888253ca6375b34bac26faf711998a8e881e9cab9b617a3126ee1a7ce6ee2168d947cf69bd2850a387276f503a7ae0271217e66d71c3f2e5d42 +DIST LoopTools-2.8.tar.gz 546810 SHA256 2395518d0eac9b0883a2c249b9a5ba80df443929c520c45e60f5a4284166eb42 SHA512 32211669fd092d2d5bb38e26a6471a95df0647d9e7ea0cc4e99ff4fd7c3e3fee107f6432ed9075e3102224f0041fac6f7075b1f0a91f7744ec3890b4b36d276e WHIRLPOOL c8dff8030d7ea1bfc6b65bef3370c5acfec69fa73f223a63b7424163b81a3bdf788eb3ffecd07e9bf61a31a63138b1fd126b6442a298c8fad1f4b04b69663a47 +EBUILD looptools-2.12.ebuild 885 SHA256 b831702e1c28ea297540f3ac5513502394b64cc6cd3a548db4238b47a32431c8 SHA512 9839812ae955f6d7c4709e43c03f689f222d6caec4a65ad4ad13fde85c8bba9a6915f026ff6dd5136499839e0505db754f006f9e0275390f62e4fd7c91c2bae4 WHIRLPOOL 99dac16b3025d6ed3ae0a4d98b9d42a48e4aa6d8bd896b2fdf7f8d872ce1d9d0aafada69c6eeab7a06d28418c9dd87b3946cdcc7c457c3c25078565e03beafb5 +EBUILD looptools-2.13.ebuild 892 SHA256 ef9969f6f44581e7f853db01b0bc2c3fbe35a353639771ab3490dfccf02c75fa SHA512 63425495632f67b951c945756a3d443f47ba12ae1e01592106e5baa49a32cf2c1ac5326ad18ece334e653c79a0d45190e7b513e039e6b4fb4ab042befb658267 WHIRLPOOL f3e8007a299c5133b866d86f29af75b77f1efcd64fbe2c0ed083d595865cefae1c7d01a90d21186db0f0f27accfdd77f9950512ac08e5b1d235f4a77a3d5ee5f +EBUILD looptools-2.8.ebuild 879 SHA256 61869bec98084afb4d318e50c7d8f42b983b461c287999fb1d22ba74055eabb5 SHA512 b4a21692121bdf97aa35d27245e19cdbaec755e392d27c8fbce122bc3c3e5733345d451afb1250461608a9cf4a00f5675ce72c558bf5bf4fe7c74ef36d663d7e WHIRLPOOL 048fb8eb5206e94b5cd4559d338944f01abfe15842d39f9405fc74b2e125754a0eff370fd9570e4b7c3baf9d85fa0a36a5c980bb16d724677fd6f5765fa3474c +MISC ChangeLog 2058 SHA256 90eb36cf9a0cff2c84c6e6cd471650d1bd653973e9c62cb5335bb074d3e74721 SHA512 fcf89f9890e3f9f7dd7a38885d291e57749e2fff4d2a4ad864451cac98adf43a212ff66ea23f30e03c0d3d0e30919353d1981850067c9b3138116d4b45578b69 WHIRLPOOL 090f4fcd53b9ff94a1cc350ffbab441f5e2e2384786768381a18843d0d5f0d616d90de41919fa772df6ad3acc67c7354d4dd4295ece06bcbf2ba2b80c1bfd7ed +MISC metadata.xml 610 SHA256 c22c1f623736d9ce3ddf8a7b76f1147bf79c5610d8f8bcf50fa2bdf3a952bf9c SHA512 2bd676b8205e286fcc590184ac94b4d460eb5aafc754410b26afcea4bd4825af6ba795e2974b2fb8fec5a921b5379418541fba045e987253e679f74e4b86b990 WHIRLPOOL 522949586933e54ef90375536d46e3f51738a92f1f9b59a0f6a86733b5cd4ff01504a36b4dd3ce7ad02b092ff20883972d7171e55eccd4cf2867eae13e7f6985 diff --git a/sci-physics/looptools/files/looptools-2.10-makefile.patch b/sci-physics/looptools/files/looptools-2.10-makefile.patch new file mode 100644 index 000000000000..bf0df2e03bb5 --- /dev/null +++ b/sci-physics/looptools/files/looptools-2.10-makefile.patch @@ -0,0 +1,98 @@ +--- a/makefile.in ++++ b/makefile.in +@@ -1,14 +1,17 @@ + BLD = build$(QUADSUFFIX) + +-LIBDIR = $(PREFIX)/lib$(LIBDIRSUFFIX) +-INCLUDEDIR = $(PREFIX)/include +-BINDIR = $(PREFIX)/bin ++LIBDIR = $(DESTDIR)/$(PREFIX)/lib$(LIBDIRSUFFIX) ++INCLUDEDIR = $(DESTDIR)/$(PREFIX)/include ++BINDIR = $(DESTDIR)/$(PREFIX)/bin + + LIB = libooptools$(QUADSUFFIX).a + FE = lt$(QUADSUFFIX)$(EXE) + MFE = LoopTools$(QUADSUFFIX)$(EXE) + INCLUDE = $(BLD)/looptools.h $(BLD)/clooptools.h + ++LIBRARY=libooptools.so ++REALNAME=$(LIBRARY).$(VER) ++ + ARGS = $(PARALLEL) \ + LIB="$(LIB)" \ + FE="$(FE)" \ +@@ -16,12 +19,12 @@ + EXE="$(EXE)" \ + DEF="$(DEF)" \ + NOUNDERSCORE="$(NOUNDERSCORE)" \ +- XFC="$(FC$(QUADSUFFIX)) $(FFLAGS) $(FFLAGS-quad) -I." \ ++ XFC="$(FC$(QUADSUFFIX)) $(FFLAGS) $(FFLAGS-quad) -I. -fPIC" \ + F90="$(F90)" \ + CC="$(CC)" \ +- CFLAGS="$(CFLAGS) $(CFLAGS-quad)" \ ++ CFLAGS="$(CFLAGS) $(CFLAGS-quad) -fPIC" \ + CXX="$(CXX)" \ +- CXXFLAGS="$(CXXFLAGS)" \ ++ CXXFLAGS="$(CXXFLAGS) -fPIC" \ + ML="$(ML)" \ + MCC="$(MCC)" \ + MCFLAGS="$(MCFLAGS)" \ +@@ -32,22 +35,24 @@ + DLLTOOL="$(DLLTOOL)" \ + LDFLAGS="$(LDFLAGS)" \ + LIBPATH="$(LIBPATH)" \ +- OBJS-quad="$(OBJS-quad)" ++ OBJS-quad="$(OBJS-quad)" \ ++ REALNAME="$(REALNAME)" + + +-default all lib frontend mma: force ++default all lib solib frontend mma: force + cd $(BLD) && $(MAKE) $(ARGS) $@ + +-install: lib frontend +- -mkdir $(PREFIX) ++install: lib solib frontend ++ -mkdir $(DESTDIR)$(PREFIX) + -mkdir $(LIBDIR) $(BINDIR) $(INCLUDEDIR) + cp -p $(BLD)/$(LIB) $(LIBDIR) + cp -p $(INCLUDE$(QUADSUFFIX)) $(INCLUDEDIR) +- strip $(BLD)/$(FE) + cp -p $(BLD)/fcc $(BLD)/$(FE) $(BINDIR) + rm -f $(BINDIR)/f++ + ln -s fcc $(BINDIR)/f++ +- test ! -f $(BLD)/$(MFE) || { strip $(BLD)/$(MFE) ; cp -p $(BLD)/$(MFE) $(BINDIR); } ++ test ! -f $(BLD)/$(MFE) || { cp -p $(BLD)/$(MFE) $(BINDIR); } ++ cp -p $(BLD)/$(REALNAME) $(LIBDIR) ++ cd $(LIBDIR) && ln -s $(REALNAME) $(LIBRARY) + + force: $(BLD)/timestamp + +--- a/src/makefile ++++ b/src/makefile +@@ -1,6 +1,6 @@ +-default: frontend mma$(ML) ++default: frontend mma$(ML) solib + +-all: frontend mma1 ++all: frontend mma1 solib + + frontend: lib $(FE) + +@@ -8,6 +8,7 @@ + + mma0 lib: $(LIB) clooptools.h fcc + ++solib: $(REALNAME) fcc + + .SUFFIXES: + +@@ -243,6 +244,8 @@ + $(AR) cru $(LIB) $? + -$(RANLIB) $(LIB) + ++$(REALNAME): $(OBJS) ++ $(XFC) $(LDFLAGS) -shared -Wl,--soname,$(REALNAME) -o $@ $? + + $(FE): lt.F $(LTINC) $(LIB) + $(XFC) -o $(FE) lt.F $(LIB) -lpthread diff --git a/sci-physics/looptools/files/looptools-2.8-makefile.patch b/sci-physics/looptools/files/looptools-2.8-makefile.patch new file mode 100644 index 000000000000..5252c1de60c0 --- /dev/null +++ b/sci-physics/looptools/files/looptools-2.8-makefile.patch @@ -0,0 +1,96 @@ +--- makefile.in ++++ makefile.in +@@ -1,14 +1,17 @@ + BLD = build$(QUADSUFFIX) + +-LIBDIR = $(PREFIX)/lib$(LIBDIRSUFFIX) +-INCLUDEDIR = $(PREFIX)/include +-BINDIR = $(PREFIX)/bin ++LIBDIR = $(DESTDIR)/$(PREFIX)/lib$(LIBDIRSUFFIX) ++INCLUDEDIR = $(DESTDIR)/$(PREFIX)/include ++BINDIR = $(DESTDIR)/$(PREFIX)/bin + + LIB = libooptools$(QUADSUFFIX).a + FE = lt$(QUADSUFFIX)$(EXE) + MFE = LoopTools$(QUADSUFFIX)$(EXE) + INCLUDE = $(BLD)/looptools.h $(BLD)/clooptools.h + ++LIBRARY=libooptools.so ++REALNAME=$(LIBRARY).$(VER) ++ + ARGS = $(PARALLEL) \ + LIB="$(LIB)" \ + FE="$(FE)" \ +@@ -16,12 +19,12 @@ + EXE="$(EXE)" \ + DEF="$(DEF)" \ + NOUNDERSCORE="$(NOUNDERSCORE)" \ +- XFC="$(FC$(QUADSUFFIX)) $(FFLAGS) $(FFLAGS-quad) -I." \ ++ XFC="$(FC$(QUADSUFFIX)) $(FFLAGS) $(FFLAGS-quad) -I. -fPIC" \ + F90="$(F90)" \ + CC="$(CC)" \ +- CFLAGS="$(CFLAGS) $(CFLAGS-quad)" \ ++ CFLAGS="$(CFLAGS) $(CFLAGS-quad) -fPIC" \ + CXX="$(CXX)" \ +- CXXFLAGS="$(CXXFLAGS)" \ ++ CXXFLAGS="$(CXXFLAGS) -fPIC" \ + ML="$(ML)" \ + MCC="$(MCC)" \ + MCFLAGS="$(MCFLAGS)" \ +@@ -31,20 +34,22 @@ + DLLTOOL="$(DLLTOOL)" \ + LDFLAGS="$(LDFLAGS)" \ + LIBPATH="$(LIBPATH)" \ +- OBJS-quad="$(OBJS-quad)" ++ OBJS-quad="$(OBJS-quad)" \ ++ REALNAME="$(REALNAME)" + + +-default all lib frontend mma: force ++default all lib solib frontend mma: force + cd $(BLD) && $(MAKE) $(ARGS) $@ + +-install: lib frontend +- -mkdir $(PREFIX) ++install: lib solib frontend ++ -mkdir $(DESTDIR)$(PREFIX) + -mkdir $(LIBDIR) $(BINDIR) $(INCLUDEDIR) + cp -p $(BLD)/$(LIB) $(LIBDIR) + cp -p $(INCLUDE$(QUADSUFFIX)) $(INCLUDEDIR) +- strip $(BLD)/$(FE) + cp -p $(BLD)/fcc $(BLD)/$(FE) $(BINDIR) +- test ! -f $(BLD)/$(MFE) || { strip $(BLD)/$(MFE) ; cp -p $(BLD)/$(MFE) $(BINDIR); } ++ test ! -f $(BLD)/$(MFE) || { cp -p $(BLD)/$(MFE) $(BINDIR); } ++ cp -p $(BLD)/$(REALNAME) $(LIBDIR) ++ cd $(LIBDIR) && ln -s $(REALNAME) $(LIBRARY) + + force: $(BLD)/timestamp + +--- src/makefile ++++ src/makefile +@@ -1,6 +1,6 @@ +-default: frontend mma$(ML) ++default: frontend mma$(ML) solib + +-all: frontend mma1 ++all: frontend mma1 solib + + frontend: lib $(FE) + +@@ -8,6 +8,7 @@ + + mma0 lib: $(LIB) clooptools.h fcc + ++solib: $(REALNAME) fcc + + .SUFFIXES: + +@@ -247,6 +248,8 @@ + $(AR) cru $(LIB) $? + -$(RANLIB) $(LIB) + ++$(REALNAME): $(OBJS) ++ $(XFC) $(LDFLAGS) -shared -Wl,--soname,$(REALNAME) -o $@ $? + + $(FE): lt.F $(LTINC) $(LIB) + $(XFC) -o $(FE) lt.F $(LIB) diff --git a/sci-physics/looptools/looptools-2.12.ebuild b/sci-physics/looptools/looptools-2.12.ebuild new file mode 100644 index 000000000000..3727a66da958 --- /dev/null +++ b/sci-physics/looptools/looptools-2.12.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils fortran-2 multilib + +MYP=LoopTools-${PV} + +DESCRIPTION="Tools for evaluation of scalar and tensor one-loop integrals" +HOMEPAGE="http://www.feynarts.de/looptools" +SRC_URI="http://www.feynarts.de/looptools/${MYP}.tar.gz" + +LICENSE="LGPL-3" + +SLOT="0/${PV}" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc static-libs" + +S="${WORKDIR}/${MYP}" + +src_prepare() { + epatch "${FILESDIR}"/${PN}-2.10-makefile.patch + export VER="${PV}" + # necessary fix for prefix + sed -i "s/lib\$(LIBDIRSUFFIX)/$(get_libdir)/" makefile.in || die +} + +src_install() { + default + # another one of these package building archive with pic + # no: ooptools is not a typo + if use static-libs; then + rm "${ED}"/usr/$(get_libdir)/libooptools.a || die + fi + use doc && dodoc manual/*.pdf +} diff --git a/sci-physics/looptools/looptools-2.13.ebuild b/sci-physics/looptools/looptools-2.13.ebuild new file mode 100644 index 000000000000..752cba285c8f --- /dev/null +++ b/sci-physics/looptools/looptools-2.13.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit fortran-2 + +MY_P=LoopTools-${PV} + +DESCRIPTION="Tools for evaluation of scalar and tensor one-loop integrals" +HOMEPAGE="http://www.feynarts.de/looptools" +SRC_URI="http://www.feynarts.de/looptools/${MY_P}.tar.gz" + +LICENSE="LGPL-3" + +SLOT="0/${PV}" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc static-libs" + +PATCHES=( "${FILESDIR}"/${PN}-2.10-makefile.patch ) + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + default + + export VER="${PV}" + # necessary fix for prefix + sed -i "s/lib\$(LIBDIRSUFFIX)/$(get_libdir)/" makefile.in || die +} + +src_install() { + default + + # another one of these package building archive with pic + # no: ooptools is not a typo + if ! use static-libs; then + rm "${ED%/}"/usr/$(get_libdir)/libooptools.a || die + fi + use doc && dodoc manual/*.pdf +} diff --git a/sci-physics/looptools/looptools-2.8.ebuild b/sci-physics/looptools/looptools-2.8.ebuild new file mode 100644 index 000000000000..db459a6afcfa --- /dev/null +++ b/sci-physics/looptools/looptools-2.8.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils fortran-2 multilib + +MYP=LoopTools-${PV} + +DESCRIPTION="Tools for evaluation of scalar and tensor one-loop integrals" +HOMEPAGE="http://www.feynarts.de/looptools" +SRC_URI="http://www.feynarts.de/looptools/${MYP}.tar.gz" + +LICENSE="LGPL-3" + +SLOT="0/${PV}" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc static-libs" + +S="${WORKDIR}/${MYP}" + +src_prepare() { + epatch "${FILESDIR}"/${P}-makefile.patch + export VER="${PV}" + # necessary fix for prefix + sed -i "s/lib\$(LIBDIRSUFFIX)/$(get_libdir)/" makefile.in || die +} + +src_install() { + default + # another one of these package building archive with pic + # no: ooptools is not a typo + if use static-libs; then + rm "${ED}"/usr/$(get_libdir)/libooptools.a || die + fi + use doc && dodoc manual/*.pdf +} diff --git a/sci-physics/looptools/metadata.xml b/sci-physics/looptools/metadata.xml new file mode 100644 index 000000000000..0750d041308a --- /dev/null +++ b/sci-physics/looptools/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription> + A package for evaluation of scalar and tensor one-loop integrals + based on the FF package by G.J. van Oldenborgh. + It features an easy Fortran, C++, and Mathematica interface + to the scalar one-loop functions of FF and in addition provides + the 2-, 3-, and 4-point tensor coefficient functions. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/meep/Manifest b/sci-physics/meep/Manifest new file mode 100644 index 000000000000..6257ee47862c --- /dev/null +++ b/sci-physics/meep/Manifest @@ -0,0 +1,7 @@ +AUX meep-1.2-no-auto-mpb.patch 652 SHA256 b898487ea962ed071db15d8212ce550e995603992b94a124694a83403fa24e59 SHA512 4a25e919ac828920fb1ad2395acb897e0b9d9123fa55ee3ed33a4c07e79d250602cb496435482710315c077d3d5408d0192d629afd70dca64aedc7a649c7091f WHIRLPOOL c3f87de28b30ce3491c17db9297e1776215caf5ee9c017b2b8fbe476fa27d2cf886691fe41cab13ab321bd3ebafce4345bdf45dfc4aea91e2e03366ceecd9d65 +AUX meep-1.2-pc-no-ldflags.patch 503 SHA256 04c8cc58833a3b0abdf4014cc561d4e6dd1099c9662ac786966b3f363b605c17 SHA512 2e8602f21814f4edef4b0572180b0b4f41f91a23d7e2576da6a2c62d602e55e9a70b5c7124cb60b7ea4d2f6debd10db3a30aa451d4b6d82eed7a7d9655a26a82 WHIRLPOOL 90140a3646ee9958b3fe076d858cafae8b946fcb1c625ff97640ebc0d8795e917164f30d1140901d0a0ec2ad4c9de8ba1b27decb1ad21a06b09c0c1d1f1e246e +DIST meep-1.3.tar.gz 740890 SHA256 564c1ff1b413a3487cf81048a45deabfdac4243a1a37ce743f4fcf0c055fd438 SHA512 4ad8d68f27d9971fe6dd4b8440f78d5b141fe747a80c50da55ecbc56a5beb0c2d31441fb46b54cac3c62d4cb34cb1ce6819c06bd2c54bc35f129ba683dc84aea WHIRLPOOL cc7a5ae88a7c3ccaabd47472ce706465b38d35598288c7d35c237d34ce691d021a5f1ab3c6fe754a0f039ed9cb0ea04cfe883555c2377f7ee2e34f2ab8424944 +EBUILD meep-1.3.ebuild 1137 SHA256 d85818be5f47ad3046050764e9b612ea87b4ab0ecde991d3a262ce727dbcca12 SHA512 c4bfee913eb8d32b0e5f67ffa87a27eff18292dcf3302b29fe1531865e02b564e8c8f43bdc4f4d8d357275238f827d82c4102fc5e68726a9ff67f7ea93ad3da9 WHIRLPOOL dd6fb20e20219836da225d3bdb58c22ad5439bf32cddbb08340cbdabe3bcd06d44d236523126e45474cfc55ae14a5420eb5840a87e4db413d0f906674e72b3b1 +MISC ChangeLog 3731 SHA256 2395d0363bcd9d857cdc7d45ac1a31994d93b8effef51db16bca5c8ada4f4eb1 SHA512 d05bda9d65a7cbfae5f486b4da096217b8dfa66c70256f2bd27ecabe2e9b83a671d4fe28932cc1355d2aadbdd3f91d2f9c8df69ba47b4de0eb8f935d9710388d WHIRLPOOL 9044b24c18b3453464615e38162a98370854039dd648b68958e3c929ef94ecd7bbef8f89d80e0e6369e92bd0aa580701285faf4738a9b33dd9fad03d81f70373 +MISC ChangeLog-2015 3125 SHA256 1615da8f08123731df3c61fec8e879e5767c235956ae78d489028c0108c01b50 SHA512 201298630a8076abd18f288898ea3f7ba179aca1af7b4d0f0bfd599ddcd9baa3aec3253db105247655b5cc0fe77e9f3f531ca03718b58b9f40b5e7d394ed7718 WHIRLPOOL 31d16921d11f974c772fb2b56c078d79ca0cf7b158427a034de9c23fc6d8b20d45a4ceacd844f4569df4c04e38faddf387320477762ec1e40f18c65baab8e7c0 +MISC metadata.xml 525 SHA256 c955cfd850a105de56c74d98c2f8fa3ca2f6356c0a52e51e6f53d1cf2c94403a SHA512 1d6f8f93e9ad60102daeabf5a6017f0f3724b2bfa2ecfca30e6e2069bb624e5067a8743b8839996b3eadc627f431b84b911b2ea4de9a5a97ee30921e158318cd WHIRLPOOL 321b36ca8259740823c0934c42bfdbe2a6eff7a66e21f96986500e88d7ec30631edcd09c7feb068409b2e7bf61b94caf93a3cf868b2791e2de8b0ab117be78a6 diff --git a/sci-physics/meep/files/meep-1.2-no-auto-mpb.patch b/sci-physics/meep/files/meep-1.2-no-auto-mpb.patch new file mode 100644 index 000000000000..8c287f208d65 --- /dev/null +++ b/sci-physics/meep/files/meep-1.2-no-auto-mpb.patch @@ -0,0 +1,16 @@ +diff -Nur meep-1.2.orig/configure.ac meep-1.2/configure.ac +--- meep-1.2.orig/configure.ac 2012-08-14 21:52:13.000000000 +0100 ++++ meep-1.2/configure.ac 2012-08-14 22:00:55.000000000 +0100 +@@ -161,8 +161,10 @@ + + ########################################################################### + # MPB library +- +-AC_CHECK_HEADER(mpb.h, [have_mpb=maybe], [have_mpb=no]) ++AC_ARG_WITH(mpb, [AC_HELP_STRING([--without-mpb],[do not build with mpb])], ok=$withval, ok=yes) ++if test "$ok" = "yes"; then ++ AC_CHECK_HEADER(mpb.h, [have_mpb=maybe], [have_mpb=no]) ++fi + + if test $have_mpb = maybe; then + if test "x$acx_lapack_ok" = x -a "$have_harminv" = xno; then diff --git a/sci-physics/meep/files/meep-1.2-pc-no-ldflags.patch b/sci-physics/meep/files/meep-1.2-pc-no-ldflags.patch new file mode 100644 index 000000000000..d7b2f72eaffc --- /dev/null +++ b/sci-physics/meep/files/meep-1.2-pc-no-ldflags.patch @@ -0,0 +1,12 @@ +diff -Nur meep-1.2.orig/configure.ac meep-1.2/configure.ac +--- meep-1.2.orig/configure.ac 2012-08-14 21:52:13.000000000 +0100 ++++ meep-1.2/configure.ac 2012-08-14 21:54:49.000000000 +0100 +@@ -224,7 +224,7 @@ + ############################################################################## + # Libraries and flags (other than -lmeep) required to link Meep: + +-MEEPLIBS="$LDFLAGS $LIBS" ++MEEPLIBS="$LIBS" + AC_SUBST(MEEPLIBS) + + ############################################################################## diff --git a/sci-physics/meep/meep-1.3.ebuild b/sci-physics/meep/meep-1.3.ebuild new file mode 100644 index 000000000000..6cc3d1495390 --- /dev/null +++ b/sci-physics/meep/meep-1.3.ebuild @@ -0,0 +1,58 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools + +DESCRIPTION="Simulation software to model electromagnetic systems" +HOMEPAGE="http://ab-initio.mit.edu/meep/" +SRC_URI="http://ab-initio.mit.edu/meep/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples hdf5 guile mpi" + +RDEPEND=" + sci-libs/fftw:3.0= + sci-libs/gsl:= + sci-physics/harminv + guile? ( >=sci-libs/libctl-3.2 ) + hdf5? ( sci-libs/hdf5:= ) + mpi? ( virtual/mpi )" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +PATCHES=( + "${FILESDIR}"/${PN}-1.2-pc-no-ldflags.patch + "${FILESDIR}"/${PN}-1.2-no-auto-mpb.patch +) + +src_prepare() { + default + eautoreconf +} + +src_configure() { + econf \ + $(use_with mpi) \ + $(use_with hdf5) \ + $(use_with guile libctl) +} + +src_test() { + # pml test buggy with optimization on + # http://thread.gmane.org/gmane.comp.science.electromagnetism.meep.general/4579 + emake -C tests pml CXXFLAGS="-O0" + emake check +} + +src_install() { + default + + if use examples; then + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples + fi +} diff --git a/sci-physics/meep/metadata.xml b/sci-physics/meep/metadata.xml new file mode 100644 index 000000000000..a6fba91cb5cc --- /dev/null +++ b/sci-physics/meep/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + The MIT Electromagnetic Equation Propagation (MEEP) is a + finite-difference time-domain (FDTD) simulation software package + developed at MIT to model electromagnetic systems, along with the MPB + eigenmode package. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/metadata.xml b/sci-physics/metadata.xml new file mode 100644 index 000000000000..2ad6cdefcdbf --- /dev/null +++ b/sci-physics/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE catmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<catmetadata> + <longdescription lang="en"> + The sci-physics category contains physics related software. + </longdescription> + <longdescription lang="pt"> + A categoria sci-physics contém programas relacionados com + fÃsica. + </longdescription> + <longdescription lang="es"> + La categorÃa sci-physics contiene software relacionado con + la fÃsica. + </longdescription> +</catmetadata> + diff --git a/sci-physics/paw/Manifest b/sci-physics/paw/Manifest new file mode 100644 index 000000000000..1cd9cd5ed02f --- /dev/null +++ b/sci-physics/paw/Manifest @@ -0,0 +1,9 @@ +AUX paw-2.14.04-glibc-2.10.patch 311 SHA256 a729f58b8d633624340c4ce0eeee453082b6dd8e5b11a2ccc3ac3b286d0b8535 SHA512 b053bedfddf6472d3b8e728b8cac518dd511a1b2ec9e12d7249f0858b3fa9c1214484461217ca4fa8111190c055ad5e69e7ece6b5c7be027f2fd1dfd869f34f7 WHIRLPOOL affcdcb981c40f0c731181bc5e3e1dbd0af9eb37efdd602fe92003722222b629746159664ec43123e7d6cb66679ca5448198cc5b19ab281eff44323db331e033 +DIST paw_2.14.04.dfsg.2-8.debian.tar.gz 75788 SHA256 1fa912310f5c2eb4cd856fca53808d6142451fc6be4ffa3be14f54195f8e2203 SHA512 63800b6071c0614d3d68eceffc23117703a9e48f6a9da3fd160b2eb27b326ffe7dc38718245d40e713b2c047967233e1aa56e7381754bbc95804b4c208d1d270 WHIRLPOOL 38899fa56f370cc4cbae0d593006a09cee451ecfb97b8d236b18bc4a36bfde7d5c4891a9309bd9e8bad9da8d8ba8691fc77b37f7e48545b989f6b9983e61ab38 +DIST paw_2.14.04.dfsg.2-9.debian.tar.gz 79495 SHA256 ff00ccfbc79ea3e727678ff0098d08a87851bc6a18a22b15ddd7e9a7634cef48 SHA512 e0ffd28aef621fbe7ff372bf1add2c3614897c755ada061d80835e43f0e7ebe342c44f5c989110ce53d8896d9738798277689bcb9fcba87c4eeae89e4d340b81 WHIRLPOOL befbf2ef10f1cf28733e06f5d08f36cd1eda8af99640aaf680daec9954ed1ca52a29599855c77e09a949306590a926eba13a5236dc3810debe528c0e720d5bf3 +DIST paw_2.14.04.dfsg.2.orig.tar.gz 3334317 SHA256 68925384706a4a61c477a48ed0fad539d214a4b04fdb9db5ef4e8d453f26c44e SHA512 6e4ef312195936b42ad641a63335586f48e0383e8a7f4330d52173492584f9d03c5fa4eab7e7de594e30556a1daacbe162b4f879718c9c489cb7a89f072b962e WHIRLPOOL a1c78a8d66cc10a1014a96d0b276fc0bf0725ff08ed6055ff4be9c194d50d1416ea32bfae32ea18d1b919d03ff2746c0bda29b74c15b2296f211d58086951551 +EBUILD paw-2.14.04-r4.ebuild 1793 SHA256 41258b5a0f35c63b300bc4819b7e5adaa791caaadad0f75251ff77fe075a30fb SHA512 040d9795bc1115730c9fd7fe11e558759ff81085a16c44a5d94f50108fcc7a3f1368e842582699c40618027f95fb6d757dc27bb6c81a33965150714332f23d6d WHIRLPOOL 451a51e54f14f5c49c6843e98262c85c56e3b44245f0d5ffebae82f1cf92942d72dd16157964c874d86f2ced18546e5bc1e4a80961445101d205685f26f37abf +EBUILD paw-2.14.04-r5.ebuild 1797 SHA256 7f59f06c8dc530ffedbb3c43bc2a6dcaea22c6dc85d76cb889b4d016686ea2dc SHA512 545245d1ffcf864fa381a51dda25318348010c155b95b0b79f4f1f2e6b845d04f4401b5ce8452e788a510332e2aabddb947e93025fe35d4ab50035d6475a8fd8 WHIRLPOOL 3ffd23489399bced58537ded4107401a06f39c1109b62082c0f137e25f97d9936a4980f7a8b5435d75f49ab10d557f1ed5d7ed36155cf14e64871ec961990c75 +MISC ChangeLog 2521 SHA256 ade321e298ece1989f9e85fc7c4d585d1de35c83cc29ad847e564f086fc7bc55 SHA512 2c302b3a8acf35a88e0fdc0221beb0b7d9fde64678526fb6c90b9a7b7402aa6feb10c50df51d766ab277a5b30232268bd12b125a04f37efe565e7ea94dd17fc6 WHIRLPOOL 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mode 100644 index 000000000000..7cfa5aa03d12 --- /dev/null +++ b/sci-physics/paw/files/paw-2.14.04-glibc-2.10.patch @@ -0,0 +1,11 @@ +--- src/pawlib/paw/cpaw/bugrep.c.orig 2009-07-13 00:38:38.000000000 +0400 ++++ src/pawlib/paw/cpaw/bugrep.c 2009-07-13 08:47:54.934308924 +0400 +@@ -20,6 +20,8 @@ + * Paw + * + */ ++#define _POSIX_SOURCE ++ + #include "paw/pilot.h" + #if defined(CERNLIB_BUGREPORT) + /*CMZ : 2.07/19 21/11/95 18.17.13 by Unknown*/ diff --git a/sci-physics/paw/metadata.xml b/sci-physics/paw/metadata.xml new file mode 100644 index 000000000000..38d0f44222c5 --- /dev/null +++ b/sci-physics/paw/metadata.xml @@ -0,0 +1,18 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + PAW is an interactive program providing interactive graphical + presentation and statistical and mathematical analysis tools. It is + designed to work on objects familiar to physicists such as histograms, + event files (Ntuples), vectors, etc. + The program is linked statically against the CERN libraries on 64-bit + architectures in order to function properly, as its design is not very + 64-bit clean. Even so, AMD64 is the only 64-bit platform where it + functions well. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/paw/paw-2.14.04-r4.ebuild b/sci-physics/paw/paw-2.14.04-r4.ebuild new file mode 100644 index 000000000000..74a1cbc75beb --- /dev/null +++ b/sci-physics/paw/paw-2.14.04-r4.ebuild @@ -0,0 +1,71 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils toolchain-funcs fortran-2 + +DEB_PN=paw +DEB_PV=${PV}.dfsg.2 +DEB_PR=8 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN's Physics Analysis Workstation data analysis program" +HOMEPAGE="https://paw.web.cern.ch/paw/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="amd64 hppa sparc x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + sci-physics/cernlib + x11-libs/libXaw + >=x11-libs/motif-2.3:0 + x11-libs/xbae" +DEPEND="${RDEPEND} + dev-lang/cfortran + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . && cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + + # fix some path stuff and collision for comis.h, + # already installed by cernlib and replace hardcoded fortran compiler + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + -e '/comis.h/d' \ + -e "s/gfortran/$(tc-getFC)/g" \ + Makefile || die + + einfo "Applying Debian patches" + emake -j1 patch + epatch "${FILESDIR}"/${P}-glibc-2.10.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" +} + +src_compile() { + VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_install() { + default + cd debian + dodoc changelog README.* deadpool.txt copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/paw/paw-2.14.04-r5.ebuild b/sci-physics/paw/paw-2.14.04-r5.ebuild new file mode 100644 index 000000000000..5774f34fa4e7 --- /dev/null +++ b/sci-physics/paw/paw-2.14.04-r5.ebuild @@ -0,0 +1,71 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils toolchain-funcs fortran-2 + +DEB_PN=paw +DEB_PV=${PV}.dfsg.2 +DEB_PR=9 +DEB_P=${DEB_PN}_${DEB_PV} + +DESCRIPTION="CERN's Physics Analysis Workstation data analysis program" +HOMEPAGE="https://paw.web.cern.ch/paw/" +SRC_URI=" + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}.orig.tar.gz + mirror://debian/pool/main/${DEB_PN:0:1}/${DEB_PN}/${DEB_P}-${DEB_PR}.debian.tar.gz" + +SLOT="0" +LICENSE="GPL-2 LGPL-2 BSD" +KEYWORDS="~amd64 ~hppa ~sparc ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + sci-physics/cernlib + x11-libs/libXaw + >=x11-libs/motif-2.3:0 + x11-libs/xbae" +DEPEND="${RDEPEND} + dev-lang/cfortran + virtual/latex-base + x11-misc/imake + x11-misc/makedepend" + +S="${WORKDIR}/${DEB_PN}-${DEB_PV}.orig" + +src_prepare() { + mv ../debian . && cp debian/add-ons/Makefile . + export DEB_BUILD_OPTIONS="$(tc-getFC) nostrip nocheck" + + # fix some path stuff and collision for comis.h, + # already installed by cernlib and replace hardcoded fortran compiler + sed -i \ + -e "s:/usr/local:${EROOT}/usr:g" \ + -e '/comis.h/d' \ + -e "s/gfortran/$(tc-getFC)/g" \ + Makefile || die + + einfo "Applying Debian patches" + emake -j1 patch + epatch "${FILESDIR}"/${P}-glibc-2.10.patch + # since we depend on cfortran, do not use the one from cernlib + rm src/include/cfortran/cfortran.h || die + sed -i \ + -e "s|\(ArCmdBase[[:space:]]*\)ar|\1$(tc-getAR)|g" \ + -e "s|\(RanlibCmd[[:space:]]*\)ranlib|\1$(tc-getRANLIB)|g" \ + src/config/Imake.tmpl \ + || die "sed Imake.tmpl failed" +} + +src_compile() { + VARTEXFONTS="${T}"/fonts + emake -j1 cernlib-indep cernlib-arch +} + +src_install() { + default + cd debian + dodoc changelog README.* deadpool.txt copyright + newdoc add-ons/README README.add-ons +} diff --git a/sci-physics/pythia/Manifest b/sci-physics/pythia/Manifest new file mode 100644 index 000000000000..88f7f9907c0e --- /dev/null +++ b/sci-physics/pythia/Manifest @@ -0,0 +1,27 @@ +AUX pythia-8.2.26-run-tests.patch 1044 SHA256 2ea7f4a3f4464a6db7414b2919f9ed06a3150b24f01f22760285089ae3350e4d SHA512 37297dbf852b402adc03f9a60ca2f9108d192dc005de1c6dfd9a9725220a50da322267938a91cfe082301942059a9b4caf91a85e41179becee6e9889881c9b57 WHIRLPOOL 5452bef046813a79c14cc68a5cf0339ed82938077185c956c92cae9e5ce20c51cd616be8e21cdb7889ab10d2d62e60e7e223e34af875d4892ff7fecab2fd6c22 +AUX pythia8209-root-noninteractive.patch 500 SHA256 c38c2adc49affd1c795d91592ee6965f813c11a2a9e9c464874496d6978ec8e0 SHA512 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b991381193c62d05d01ea82c74a2fabe3968683b4a1e0914027768dbbc3d2b52a85584b77b1b7274e77222e10da0aaa1a55d3982b423bc7c2b5deb4d775e6389 WHIRLPOOL 57a6cb583f22f2d4a01135664f82c74411f57cb2cecf58d93f5b3043fb0b80b8630c1e692173422e6ee2745efa3f63732db5d3c446bd0e07e46e498e3d21e8f8 diff --git a/sci-physics/pythia/files/pythia-8.2.26-run-tests.patch b/sci-physics/pythia/files/pythia-8.2.26-run-tests.patch new file mode 100644 index 000000000000..34c7179fa55d --- /dev/null +++ b/sci-physics/pythia/files/pythia-8.2.26-run-tests.patch @@ -0,0 +1,27 @@ +--- examples/Makefile.orig 2017-07-25 11:56:03.545393093 +0200 ++++ examples/Makefile 2017-07-25 11:56:37.468572887 +0200 +@@ -158,6 +158,7 @@ + rm -f $(LOCAL_EXAMPLE)/weakbosons.lhe + rm -f $(LOCAL_EXAMPLE)/Pythia8.promc + rm -f $(LOCAL_EXAMPLE)/hist.root ++ rm main*out *.dat + + # Clean all temporary and generated files. + distclean: clean +@@ -168,3 +169,16 @@ + rm -f $(LOCAL_SHARE)/COPYING + rm -f $(LOCAL_SHARE)/GUIDELINES + rm -f $(LOCAL_SHARE)/README ++ ++# Run tests, inject test-specific arguments when needed ++main%.out: main% ++ ./$< \ ++ $(if $(findstring $*,16 42 43 $(shell seq 81 89)), main$*.cmnd) \ ++ $(if $(findstring $*, $(shell seq 81 83)), w+_production_lhc_0.lhe) \ ++ $(if $(findstring $*, 84), hepmcout84.dat 2 w+_production_lhc) \ ++ $(if $(findstring $*, $(shell seq 85 88)), w_production) \ ++ $(if $(findstring $*, 42 43 $(shell seq 81 89)), histout$*.dat) \ ++ > $@ ++ ++main89.out: main89 ++ $(foreach cmd, $(wildcard main89*.cmnd), ./$< $(cmd) histout-$(cmd).dat >> $@ || exit;) diff --git a/sci-physics/pythia/files/pythia8209-root-noninteractive.patch b/sci-physics/pythia/files/pythia8209-root-noninteractive.patch new file mode 100644 index 000000000000..4581eaea389b --- /dev/null +++ b/sci-physics/pythia/files/pythia8209-root-noninteractive.patch @@ -0,0 +1,17 @@ +--- pythia8209/examples/main91.cc.orig 2015-06-05 07:44:27.000000000 +0300 ++++ pythia8209/examples/main91.cc 2015-06-05 08:17:22.477228166 +0300 +@@ -62,13 +62,9 @@ + // Statistics on event generation. + pythia.stat(); + +- // Show histogram. Possibility to close it. +- mult->Draw(); +- std::cout << "\nDouble click on the histogram window to quit.\n"; +- gPad->WaitPrimitive(); +- + // Save histogram on file and close file. + mult->Write(); ++ outFile->Close(); + delete outFile; + + // Done. diff --git a/sci-physics/pythia/files/pythia8209-run-tests.patch b/sci-physics/pythia/files/pythia8209-run-tests.patch new file mode 100644 index 000000000000..d1edc8393726 --- /dev/null +++ b/sci-physics/pythia/files/pythia8209-run-tests.patch @@ -0,0 +1,20 @@ +--- pythia8209/examples/Makefile.orig 2015-06-04 22:21:53.000000000 +0300 ++++ pythia8209/examples/Makefile 2015-06-05 05:35:25.324262331 +0300 +@@ -139,3 +139,17 @@ + rm -f test[0-9][0-9][0-9]; rm -f out[0-9][0-9][0-9];\ + rm -f weakbosons.lhe; rm -f Pythia8.promc; rm -f hist.root;\ + rm -f *~; rm -f \#*; rm -f core*; rm -f *Dct.* ++ rm -f main*out *.dat ++ ++# Run tests, inject test-specific arguments when needed ++main%.out: main% ++ ./$< \ ++ $(if $(findstring $*,16 42 43 $(shell seq 81 89)), main$*.cmnd) \ ++ $(if $(findstring $*, $(shell seq 81 83)), w+_production_lhc_0.lhe) \ ++ $(if $(findstring $*, 84), hepmcout84.dat 2 w+_production_lhc) \ ++ $(if $(findstring $*, $(shell seq 85 88)), w_production) \ ++ $(if $(findstring $*, 42 43 $(shell seq 81 89)), histout$*.dat) \ ++ > $@ ++ ++main89.out: main89 ++ $(foreach cmd, $(wildcard main89*.cmnd), ./$< $(cmd) histout-$(cmd).dat >> $@ || exit;) diff --git a/sci-physics/pythia/metadata.xml b/sci-physics/pythia/metadata.xml new file mode 100644 index 000000000000..aaef5640ca63 --- /dev/null +++ b/sci-physics/pythia/metadata.xml @@ -0,0 +1,25 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + PYTHIA is a program for the generation of high-energy physics + events, i.e. for the description of collisions at high energies + between elementary particles such as e+, e-, p and pbar in various + combinations. It contains theory and models for a number of physics + aspects, including hard and soft interactions, parton distributions, + initial- and final-state parton showers, multiple interactions, + fragmentation and decay. It is largely based on original research, + but also borrows many formulae and other knowledge from the + literature. +</longdescription> + <use> + <flag name="fastjet">Build jets using the <pkg>sci-physics/fastjet</pkg> package</flag> + <flag name="hepmc">Adds support for High Energy Physics Monte Carlo Generators <pkg>sci-physics/hepmc</pkg></flag> + <flag name="lhapdf">Support the use of external PDF sets via <pkg>sci-physics/lhapdf</pkg></flag> + <flag name="root">Use <pkg>sci-physics/root</pkg> trees and histograms (in examples only)</flag> + </use> +</pkgmetadata> diff --git a/sci-physics/pythia/pythia-6.4.28-r1.ebuild b/sci-physics/pythia/pythia-6.4.28-r1.ebuild new file mode 100644 index 000000000000..92d4af7849ac --- /dev/null +++ b/sci-physics/pythia/pythia-6.4.28-r1.ebuild @@ -0,0 +1,68 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit autotools fortran-2 versionator + +MV=$(get_major_version) +MY_PN=${PN}${MV} +DOC_PV=0613 +EX_PV=6.4.18 +PYR_P=pythia6-20160413 + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia6.hepforge.org/" + +# pythia6 from root is needed for some files to interface pythia6 with root. +# To produce a split version, replace the 6.4.x by the current version: +# svn export http://svn.hepforge.org/pythia6/tags/v_6_4_x/ pythia-6.4.x +# tar cJf pythia-6.4.x.tar.xz +SRC_URI=" + https://dev.gentoo.org/~bicatali/distfiles/${P}.tar.xz + https://root.cern.ch/download/pythia6.tar.gz -> ${PYR_P}.tar.gz + doc? ( http://home.thep.lu.se/~torbjorn/pythia/lutp${DOC_PV}man2.pdf ) + examples? ( mirror://gentoo/${PN}-${EX_PV}-examples.tar.bz2 )" + +SLOT="6" +LICENSE="public-domain" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples static-libs" + +src_prepare() { + cp ../pythia6/tpythia6_called_from_cc.F . + cp ../pythia6/pythia6_common_address.c . + cat > configure.ac <<-EOF + AC_INIT(${PN},${PV}) + AM_INIT_AUTOMAKE + AC_PROG_F77 + LT_INIT + AC_CHECK_LIB(m,sqrt) + AC_CONFIG_FILES(Makefile) + AC_OUTPUT + EOF + echo >> Makefile.am "lib_LTLIBRARIES = libpythia6.la" + echo >> Makefile.am "libpythia6_la_SOURCES = \ " + # replace wildcard from makefile to ls in shell + local f + for f in py*.f struct*.f up*.f fh*.f; do + echo >> Makefile.am " ${f} \\" + done + echo >> Makefile.am " ssmssm.f sugra.f visaje.f pdfset.f \\" + echo >> Makefile.am " tpythia6_called_from_cc.F pythia6_common_address.c" + eautoreconf +} + +src_configure() { + econf $(use_enable static-libs static) +} + +src_install() { + default + dodoc update_notes.txt + use doc && dodoc "${DISTDIR}"/lutp${DOC_PV}man2.pdf + if use examples; then + insinto /usr/share/doc/${PF} + doins -r "${WORKDIR}"/examples + fi +} diff --git a/sci-physics/pythia/pythia-6.4.28.ebuild b/sci-physics/pythia/pythia-6.4.28.ebuild new file mode 100644 index 000000000000..af2b9cbbb1be --- /dev/null +++ b/sci-physics/pythia/pythia-6.4.28.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit autotools fortran-2 versionator + +MV=$(get_major_version) +MY_PN=${PN}${MV} +DOC_PV=0613 +EX_PV=6.4.18 + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia6.hepforge.org/" + +# pythia6 from root is needed for some files to interface pythia6 with root. +# To produce a split version, replace the 6.4.x by the current version: +# svn export http://svn.hepforge.org/pythia6/tags/v_6_4_x/ pythia-6.4.x +# tar cJf pythia-6.4.x.tar.xz +SRC_URI=" + https://dev.gentoo.org/~bicatali/distfiles/${P}.tar.xz + https://root.cern.ch/download/pythia6.tar.gz + doc? ( http://home.thep.lu.se/~torbjorn/pythia/lutp${DOC_PV}man2.pdf ) + examples? ( mirror://gentoo/${PN}-${EX_PV}-examples.tar.bz2 )" + +SLOT="6" +LICENSE="public-domain" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="doc examples static-libs" + +src_prepare() { + cp ../pythia6/tpythia6_called_from_cc.F . + cp ../pythia6/pythia6_common_address.c . + cat > configure.ac <<-EOF + AC_INIT(${PN},${PV}) + AM_INIT_AUTOMAKE + AC_PROG_F77 + LT_INIT + AC_CHECK_LIB(m,sqrt) + AC_CONFIG_FILES(Makefile) + AC_OUTPUT + EOF + echo >> Makefile.am "lib_LTLIBRARIES = libpythia6.la" + echo >> Makefile.am "libpythia6_la_SOURCES = \ " + # replace wildcard from makefile to ls in shell + local f + for f in py*.f struct*.f up*.f fh*.f; do + echo >> Makefile.am " ${f} \\" + done + echo >> Makefile.am " ssmssm.f sugra.f visaje.f pdfset.f \\" + echo >> Makefile.am " tpythia6_called_from_cc.F pythia6_common_address.c" + eautoreconf +} + +src_configure() { + econf $(use_enable static-libs static) +} + +src_install() { + default + dodoc update_notes.txt + use doc && dodoc "${DISTDIR}"/lutp${DOC_PV}man2.pdf + if use examples; then + insinto /usr/share/doc/${PF} + doins -r "${WORKDIR}"/examples + fi +} diff --git a/sci-physics/pythia/pythia-8.1.86-r1.ebuild b/sci-physics/pythia/pythia-8.1.86-r1.ebuild new file mode 100644 index 000000000000..60aca11c2471 --- /dev/null +++ b/sci-physics/pythia/pythia-8.1.86-r1.ebuild @@ -0,0 +1,100 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils versionator toolchain-funcs multilib + +MV=$(get_major_version) +MY_P=${PN}$(replace_all_version_separators "" ${PV}) + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia8.hepforge.org/" +SRC_URI="http://home.thep.lu.se/~torbjorn/${PN}${MV}/${MY_P}.tgz" + +SLOT="8" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples gzip +hepmc static-libs" + +DEPEND=" + gzip? ( dev-libs/boost sys-libs/zlib ) + hepmc? ( sci-physics/hepmc:0= )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + PYTHIADIR="${EPREFIX}/usr/share/pythia8" + # set datadir for xmldor in include file + sed -i \ + -e "s:../xmldoc:${PYTHIADIR}/xmldoc:" \ + include/Pythia8/Pythia.h || die + # respect libdir, prefix, flags + sed -i \ + -e "s:/lib:/$(get_libdir):g" \ + -e "s:/usr:${EPREFIX}/usr:g" \ + -e "s:-O2::g" \ + configure || die + sed -i \ + -e "s:LIBDIR=.*:LIBDIR=$(get_libdir):" \ + -e "s:LIBDIRARCH=.*:LIBDIRARCH=$(get_libdir):" \ + -e "s:cp -r lib:cp -r $(get_libdir):" \ + -e '/ln -fs/d' \ + Makefile examples/Makefile || die +} + +src_configure() { + export USRCXXFLAGS="${CXXFLAGS}" + export USRLDFLAGSSHARED="${LDFLAGS}" + tc-export CC CXX + # homemade configure script + ./configure \ + --installdir="${EPREFIX}/usr" \ + --datadir="${PYTHIADIR}" \ + --enable-shared \ + $(usex gzip "--enable-gzip=yes" "") \ + $(usex hepmc "--with-hepmcversion=2 --with-hepmc=${EPREFIX}/usr" "") \ + || die + if ! use static-libs; then + sed -i \ + -e '/targets.*=$(LIBDIR.*\.a$/d' \ + -e 's/+=\(.*libpythia8\.\)/=\1/' \ + Makefile || die + sed -i \ + -e 's:\.a:\.so:g' \ + -e 's:$(LIBDIRARCH):$(LIBDIR):g' \ + examples/Makefile || die + fi +} + +src_test() { + cd examples || die + # use emake for parallel instead of long runmains + local tests="$(echo main0{1..8})" t + use hepmc && tests="${tests} main31" + emake ${tests} + for t in ${tests}; do + LD_LIBRARY_PATH="${S}/$(get_libdir):${LD_LIBRARY_PATH}" \ + bin/${t}.exe > ${t}.out || die "test ${t} failed" + done + emake clean && rm main*out +} + +src_install() { + emake INSTALLDIR="${ED}/usr" DATADIR="${D}/${PYTHIADIR}" install + rm -r "${D}"/${PYTHIADIR}/{html,php}doc || die + echo "PYTHIA8DATA=${PYTHIADIR}/xmldoc" >> 99pythia8 + doenvd 99pythia8 + + dodoc GUIDELINES AUTHORS README + if use doc; then + dodoc worksheet.pdf htmldoc/pythia8100.pdf + dohtml -r htmldoc/* + fi + if use examples; then + insinto /usr/share/doc/${PF} + doins -r examples rootexamples + docompress -x /usr/share/doc/${PF}/{root,}examples + fi +} diff --git a/sci-physics/pythia/pythia-8.1.86.ebuild b/sci-physics/pythia/pythia-8.1.86.ebuild new file mode 100644 index 000000000000..b7a47e6657ba --- /dev/null +++ b/sci-physics/pythia/pythia-8.1.86.ebuild @@ -0,0 +1,100 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils versionator toolchain-funcs multilib + +MV=$(get_major_version) +MY_P=${PN}$(replace_all_version_separators "" ${PV}) + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia8.hepforge.org/" +SRC_URI="http://home.thep.lu.se/~torbjorn/${PN}${MV}/${MY_P}.tgz" + +SLOT="8" +LICENSE="GPL-2" +KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +IUSE="doc examples gzip +hepmc static-libs" + +DEPEND=" + gzip? ( dev-libs/boost sys-libs/zlib ) + hepmc? ( sci-physics/hepmc:0= )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + PYTHIADIR="${EPREFIX}/usr/share/pythia8" + # set datadir for xmldor in include file + sed -i \ + -e "s:../xmldoc:${PYTHIADIR}/xmldoc:" \ + include/Pythia8/Pythia.h || die + # respect libdir, prefix, flags + sed -i \ + -e "s:/lib:/$(get_libdir):g" \ + -e "s:/usr:${EPREFIX}/usr:g" \ + -e "s:-O2::g" \ + configure || die + sed -i \ + -e "s:LIBDIR=.*:LIBDIR=$(get_libdir):" \ + -e "s:LIBDIRARCH=.*:LIBDIRARCH=$(get_libdir):" \ + -e "s:cp -r lib:cp -r $(get_libdir):" \ + -e '/ln -fs/d' \ + Makefile examples/Makefile || die +} + +src_configure() { + export USRCXXFLAGS="${CXXFLAGS}" + export USRLDFLAGSSHARED="${LDFLAGS}" + tc-export CC CXX + # homemade configure script + ./configure \ + --installdir="${EPREFIX}/usr" \ + --datadir="${PYTHIADIR}" \ + --enable-shared \ + $(usex gzip "--enable-gzip=yes" "") \ + $(usex hepmc "--with-hepmcversion=2 --with-hepmc=${EPREFIX}/usr" "") \ + || die + if ! use static-libs; then + sed -i \ + -e '/targets.*=$(LIBDIR.*\.a$/d' \ + -e 's/+=\(.*libpythia8\.\)/=\1/' \ + Makefile || die + sed -i \ + -e 's:\.a:\.so:g' \ + -e 's:$(LIBDIRARCH):$(LIBDIR):g' \ + examples/Makefile || die + fi +} + +src_test() { + cd examples || die + # use emake for parallel instead of long runmains + local tests="$(echo main0{1..8})" t + use hepmc && tests="${tests} main31" + emake ${tests} + for t in ${tests}; do + LD_LIBRARY_PATH="${S}/$(get_libdir):${LD_LIBRARY_PATH}" \ + bin/${t}.exe > ${t}.out || die "test ${t} failed" + done + emake clean && rm main*out +} + +src_install() { + emake INSTALLDIR="${ED}/usr" DATADIR="${D}/${PYTHIADIR}" install + rm -r "${D}"/${PYTHIADIR}/{html,php}doc || die + echo "PYTHIA8DATA=${PYTHIADIR}/xmldoc" >> 99pythia8 + doenvd 99pythia8 + + dodoc GUIDELINES AUTHORS README + if use doc; then + dodoc worksheet.pdf + dohtml -r htmldoc/* + fi + if use examples; then + insinto /usr/share/doc/${PF} + doins -r examples + docompress -x /usr/share/doc/${PF}/examples + fi +} diff --git a/sci-physics/pythia/pythia-8.2.10.ebuild b/sci-physics/pythia/pythia-8.2.10.ebuild new file mode 100644 index 000000000000..84240a7e7d52 --- /dev/null +++ b/sci-physics/pythia/pythia-8.2.10.ebuild @@ -0,0 +1,183 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit eutils multilib toolchain-funcs versionator + +MV=$(get_major_version) +MY_P=${PN}$(replace_all_version_separators "" ${PV}) +LHA_VER="6.1" + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia8.hepforge.org/" +SRC_URI="http://home.thep.lu.se/~torbjorn/${PN}${MV}/${MY_P}.tgz + test? ( lhapdf? ( + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/CT10.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/MRST2007lomod.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/NNPDF23_nlo_as_0119_qed_mc.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/NNPDF23_nnlo_as_0119_qed_mc.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/cteq66.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/cteq6l1.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/unvalidated/MRST2004qed.tar.gz + ) )" + +SLOT="8" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples gzip +hepmc fastjet lhapdf root static-libs test" + +RDEPEND=" + fastjet? ( >=sci-physics/fastjet-3 ) + gzip? ( sys-libs/zlib ) + hepmc? ( sci-physics/hepmc:0= ) + lhapdf? ( >=sci-physics/lhapdf-6:= ) +" +# ROOT is used only when building related tests +DEPEND="${RDEPEND} + test? ( root? ( sci-physics/root:= ) ) +" + +S="${WORKDIR}/${MY_P}" + +pkg_pretend() { + if use root && ! use test; then + ewarn "ROOT support will only affect examples code build during test stage." + ewarn "Since you have tests disabled, this is a no-op." + fi +} + +src_prepare() { + PYTHIADIR="/usr/share/pythia8" + EPYTHIADIR="${EPREFIX}${PYTHIADIR}" + # set datadir for xmldor in include file + sed -i \ + -e "s:../share/Pythia8/xmldoc:${EPYTHIADIR}/xmldoc:" \ + include/Pythia8/Pythia.h || die + # respect libdir, prefix, flags + sed -i \ + -e "s:/lib:/$(get_libdir):g" \ + -e "s:/usr:${EPREFIX}/usr:g" \ + -e "s:-O2:${CXXFLAGS}:g" \ + -e "s:Cint:Core:g" \ + configure || die + sed -i 's:$(CXX) $^ -o $@ $(CXX_COMMON) $(CXX_SHARED):$(CXX) $(LDFLAGS) $^ -o $@ $(CXX_COMMON) $(CXX_SHARED):g' \ + Makefile || die + sed -i 's:$(CXX):$(CXX) $(LDFLAGS):' examples/Makefile || die + # we use lhapdf6 instead of lhapdf5 + # some PDFs changed, use something similar + sed -i \ + -e "s:LHAPDF5:LHAPDF6:g" \ + -e "s:\.LHgrid::g" \ + -e "s:\.LHpdf::g" \ + -e "s:MRST2001lo:MRST2007lomod:g" \ + -e "s:cteq6ll:cteq6l1:g" \ + -e "s:cteq6m:cteq66:g" \ + examples/*.{cc,cmnd} || die + # After lhapdf5->6 migration PDFs are identical within ~1/1000 + # https://www.hepforge.org/archive/lhapdf/pdfsets/6.1/README + sed -i \ + -e "s:1e-8:3e-1:g" \ + -e "s:nlo_as_0119_qed:nlo_as_0119_qed_mc:g" \ + -e "s:xmldoc:share/Pythia8/xmldoc:g" \ + examples/main54.cc || die + # ask cflags from root + sed -i "s:root-config:root-config --cflags:g" examples/Makefile || die + if ! use static-libs; then + sed -i \ + -e '/TARGETS=$(LOCAL_LIB)\/libpythia8\.a/d' \ + -e 's:libpythia8\.a$:libpythia8\.so$:g' \ + Makefile || die + sed -i 's:libpythia8\.a:libpythia8\.so:g' \ + examples/Makefile || die + fi + + epatch "${FILESDIR}/${PN}8209-run-tests.patch" + epatch "${FILESDIR}/${PN}8209-root-noninteractive.patch" +} + +# TODO: the following optional packages are out of Gentoo tree: +# - EvtGen http://atlas-computing.web.cern.ch/atlas-computing/links/externalDirectory/EvtGen/ +# - PowHEG http://powhegbox.mib.infn.it/ +# - ProMC https://github.com/Argonne-National-Laboratory/ProMC/ +src_configure() { + # homemade configure script + ./configure \ + --arch=Linux \ + --cxx=$(tc-getCXX) \ + --enable-shared \ + --prefix="${EPREFIX}/usr" \ + --prefix-lib="$(get_libdir)" \ + --prefix-share="${EPYTHIADIR}" \ + $(usex fastjet "--with-fastjet3" "") \ + $(usex gzip "--with-gzip" "") \ + $(usex hepmc "--with-hepmc2" "") \ + $(usex lhapdf "--with-lhapdf6 + --with-lhapdf6-plugin=LHAPDF6.h + --with-lhapdf6-lib=${EPREFIX}/usr/$(get_libdir)" "") \ + $(usex root "--with-root + --with-root-include=${EPREFIX}/usr/include/root + --with-root-lib=${EPREFIX}/usr/$(get_libdir)/root" "") \ + || die + + # fix pythia config script + sed -i \ + -e 's:pythia8/examples/Makefile.inc:pythia8/Makefile.inc:' \ + -e 's:LINE%=:LINE%%=:' \ + bin/pythia8-config || die +} + +src_test() { + cd examples || die + + local tests="$(echo main{{01..32},37,38,61,62,73,80}.out)" + use hepmc && tests+=" $(echo main{41,42,85,86}.out)" + use hepmc && use lhapdf && tests+=" $(echo main{43,{87..89}}.out)" + use lhapdf && tests+=" $(echo main{51..54}.out)" + use fastjet && tests+=" $(echo main{71,72}.out)" + use fastjet && use hepmc && use lhapdf && tests+=" $(echo main{81..84}).out" + use root && tests+=" main91.out" + # Disabled tests: + # 33 needs PowHEG + # 46 needs ProMC + # 48 needs EvtGen + # 92 generated ROOT dictionary is badly broken + + # use emake for parallel instead of long runmains + LD_LIBRARY_PATH="${S}/$(get_libdir):${LD_LIBRARY_PATH}" \ + PYTHIA8DATA="../share/Pythia8/xmldoc/" \ + LHAPDF_DATA_PATH="${WORKDIR}" \ + emake ${tests} + emake clean +} + +src_install() { + # make install is too broken, much easier to install manually + dobin bin/pythia8-config + doheader -r include/* + dolib lib/* + insinto "${PYTHIADIR}" + doins -r share/Pythia8/xmldoc examples/Makefile.inc + + echo "PYTHIA8DATA=${EPYTHIADIR}/xmldoc" >> 99pythia8 + doenvd 99pythia8 + + dodoc AUTHORS GUIDELINES README + if use doc; then + dodoc share/Pythia8/pdfdoc/* + dohtml -r share/Pythia8/htmldoc/* + fi + if use examples; then + # reuse system Makefile.inc + rm examples/Makefile.inc || die + sed -i "s:include Makefile.inc:include ${EPYTHIADIR}:" \ + examples/Makefile || die + + insinto /usr/share/doc/${PF} + doins -r examples + docompress -x /usr/share/doc/${PF}/examples + fi + + # cleanup + unset PYTHIADIR EPYTHIADIR +} diff --git a/sci-physics/pythia/pythia-8.2.26.ebuild b/sci-physics/pythia/pythia-8.2.26.ebuild new file mode 100644 index 000000000000..2851fad340e6 --- /dev/null +++ b/sci-physics/pythia/pythia-8.2.26.ebuild @@ -0,0 +1,184 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils multilib toolchain-funcs versionator + +MV=$(get_major_version) +MY_P=${PN}$(replace_all_version_separators "" ${PV}) +LHA_VER="6.1" + +DESCRIPTION="Lund Monte Carlo high-energy physics event generator" +HOMEPAGE="http://pythia8.hepforge.org/" +SRC_URI="http://home.thep.lu.se/~torbjorn/${PN}${MV}/${MY_P}.tgz + test? ( lhapdf? ( + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/CT10.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/MRST2007lomod.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/NNPDF23_nlo_as_0119_qed_mc.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/NNPDF23_nnlo_as_0119_qed_mc.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/cteq66.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/cteq6l1.tar.gz + https://www.hepforge.org/archive/lhapdf/pdfsets/${LHA_VER}/unvalidated/MRST2004qed.tar.gz + ) )" + +SLOT="8" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples gzip +hepmc fastjet lhapdf root static-libs test" + +RDEPEND=" + fastjet? ( >=sci-physics/fastjet-3 ) + gzip? ( sys-libs/zlib ) + hepmc? ( sci-physics/hepmc:0= ) + lhapdf? ( >=sci-physics/lhapdf-6:= ) +" +# ROOT is used only when building related tests +DEPEND="${RDEPEND} + test? ( root? ( sci-physics/root:= ) ) +" + +S="${WORKDIR}/${MY_P}" + +pkg_pretend() { + if use root && ! use test; then + ewarn "ROOT support will only affect examples code build during test stage." + ewarn "Since you have tests disabled, this is a no-op." + fi +} + +src_prepare() { + PYTHIADIR="/usr/share/pythia8" + EPYTHIADIR="${EPREFIX}${PYTHIADIR}" + # set datadir for xmldor in include file + sed -i \ + -e "s:../share/Pythia8/xmldoc:${EPYTHIADIR}/xmldoc:" \ + include/Pythia8/Pythia.h || die + # respect libdir, prefix, flags + sed -i \ + -e "s:/lib:/$(get_libdir):g" \ + -e "s:/usr:${EPREFIX}/usr:g" \ + -e "s:-O2:${CXXFLAGS}:g" \ + -e "s:Cint:Core:g" \ + configure || die + sed -i 's:$(CXX) $^ -o $@ $(CXX_COMMON) $(CXX_SHARED):$(CXX) $(LDFLAGS) $^ -o $@ $(CXX_COMMON) $(CXX_SHARED):g' \ + Makefile || die + sed -i 's:$(CXX):$(CXX) $(LDFLAGS):' examples/Makefile || die + # we use lhapdf6 instead of lhapdf5 + # some PDFs changed, use something similar + sed -i \ + -e "s:LHAPDF5:LHAPDF6:g" \ + -e "s:\.LHgrid::g" \ + -e "s:\.LHpdf::g" \ + -e "s:MRST2001lo:MRST2007lomod:g" \ + -e "s:cteq6ll:cteq6l1:g" \ + -e "s:cteq6m:cteq66:g" \ + examples/*.{cc,cmnd} || die + # After lhapdf5->6 migration PDFs are identical within ~1/1000 + # https://www.hepforge.org/archive/lhapdf/pdfsets/6.1/README + sed -i \ + -e "s:1e-8:3e-1:g" \ + -e "s:nlo_as_0119_qed:nlo_as_0119_qed_mc:g" \ + -e "s:xmldoc:share/Pythia8/xmldoc:g" \ + examples/main54.cc || die + # ask cflags from root + sed -i "s:root-config:root-config --cflags:g" examples/Makefile || die + if ! use static-libs; then + sed -i \ + -e '/TARGETS=$(LOCAL_LIB)\/libpythia8\.a/d' \ + -e 's:libpythia8\.a$:libpythia8$(LIB_SUFFIX):g' \ + Makefile || die + sed -i 's:libpythia8\.a:libpythia8$(LIB_SUFFIX):g' \ + examples/Makefile || die + fi + + eapply "${FILESDIR}/${PF}-run-tests.patch" + eapply "${FILESDIR}/${PN}8209-root-noninteractive.patch" + eapply_user +} + +# TODO: the following optional packages are out of Gentoo tree: +# - EvtGen http://atlas-computing.web.cern.ch/atlas-computing/links/externalDirectory/EvtGen/ +# - PowHEG http://powhegbox.mib.infn.it/ +# - ProMC https://github.com/Argonne-National-Laboratory/ProMC/ +src_configure() { + # homemade configure script + ./configure \ + --arch=Linux \ + --cxx=$(tc-getCXX) \ + --enable-shared \ + --prefix="${EPREFIX}/usr" \ + --prefix-lib="$(get_libdir)" \ + --prefix-share="${EPYTHIADIR}" \ + $(usex fastjet "--with-fastjet3" "") \ + $(usex gzip "--with-gzip" "") \ + $(usex hepmc "--with-hepmc2" "") \ + $(usex lhapdf "--with-lhapdf6 + --with-lhapdf6-plugin=LHAPDF6.h + --with-lhapdf6-lib=${EPREFIX}/usr/$(get_libdir)" "") \ + $(usex root "--with-root + --with-root-include=${EPREFIX}/usr/include/root + --with-root-lib=${EPREFIX}/usr/$(get_libdir)/root" "") \ + || die + + # fix pythia config script + sed -i \ + -e 's:pythia8/examples/Makefile.inc:pythia8/Makefile.inc:' \ + -e 's:LINE%=:LINE%%=:' \ + bin/pythia8-config || die +} + +src_test() { + cd examples || die + + local tests="$(echo main{{01..32},37,38,61,62,73,80}.out)" + use hepmc && tests+=" $(echo main{41,42,85,86}.out)" + use hepmc && use lhapdf && tests+=" $(echo main{43,{87..89}}.out)" + use lhapdf && tests+=" $(echo main{51..54}.out)" + use fastjet && tests+=" $(echo main{71,72}.out)" + use fastjet && use hepmc && use lhapdf && tests+=" $(echo main{81..84}).out" + use root && tests+=" main91.out" + # Disabled tests: + # 33 needs PowHEG + # 46 needs ProMC + # 48 needs EvtGen + # 92 generated ROOT dictionary is badly broken + + # use emake for parallel instead of long runmains + LD_LIBRARY_PATH="${S}/$(get_libdir):${LD_LIBRARY_PATH}" \ + PYTHIA8DATA="../share/Pythia8/xmldoc/" \ + LHAPDF_DATA_PATH="${WORKDIR}" \ + emake ${tests} + emake clean +} + +src_install() { + # make install is too broken, much easier to install manually + dobin bin/pythia8-config + doheader -r include/* + dolib lib/* + insinto "${PYTHIADIR}" + doins -r share/Pythia8/xmldoc examples/Makefile.inc + + echo "PYTHIA8DATA=${EPYTHIADIR}/xmldoc" >> 99pythia8 + doenvd 99pythia8 + + dodoc AUTHORS GUIDELINES README + if use doc; then + dodoc share/Pythia8/pdfdoc/* + dohtml -r share/Pythia8/htmldoc/* + fi + if use examples; then + # reuse system Makefile.inc + rm examples/Makefile.inc || die + sed -i "s:include Makefile.inc:include ${EPYTHIADIR}:" \ + examples/Makefile || die + + insinto /usr/share/doc/${PF} + doins -r examples + docompress -x /usr/share/doc/${PF}/examples + fi + + # cleanup + unset PYTHIADIR EPYTHIADIR +} diff --git a/sci-physics/qutip/Manifest b/sci-physics/qutip/Manifest new file mode 100644 index 000000000000..aa945704f4bb --- /dev/null +++ b/sci-physics/qutip/Manifest @@ -0,0 +1,3 @@ +DIST qutip-4.2.0.tar.gz 424805 SHA256 3c7fed0e9b04c0f69dab1555babed1b847d388c0cef9f26fbdc2f4db611d61e7 SHA512 888e569b30a1085162ecfa768967526f5ce34b19e1a1b0f76f1331eb3978159ba321e126a1bc57e0936c5819218f07a336a57c80193b33af1009d1cd87fa95de WHIRLPOOL 8c735c618bb21d51009bf5373d3e1e8d89d3186edcbea1be729daf13bf1fcc7d151bfad176ddf960f7563e1e0fa7e35f095f2c8e9e8c3839ac94ceb408f80e88 +EBUILD qutip-4.2.0.ebuild 1151 SHA256 f51950816dda3b4148e9dcec846c3ace17613b1b91b84445d30357267c1f9887 SHA512 0c3f399b1b684e7805b94f387ce87c275a037de82bd101edeeb0099b326f3ddbe797cf2bc1912a971cd68c0b6cc5d788841d8096889ed3d96f4f192a77d62296 WHIRLPOOL 679000448c54392e44883451eed150a6bb7fe605e04d2672476c93b87ff4332830d79c4a53d4f73170fb64c6e316defcf4be2bd2950d40193d829791b8336d6f +MISC metadata.xml 1166 SHA256 eca450cc7908a8c2e722bcc4aec64ed00eda808a8ff33624a1b94ee152d90d45 SHA512 eedcc69cefe905b4d0f39a106f5b444c9924ba60e2ecea1bdbca8551a946b1008a5e9ec83ef285f201fefd20b4a7bab76f4280f0f6827a3422257c6500e4c4af WHIRLPOOL 273cf85211356350364ab888fdc35f457b8d16fe345b7aa3d4b164e7370f3619f1b24a17c9e2264b028e4e1d03ca5ccb17665fad641f3aa6eaca2bb2819f2cbd diff --git a/sci-physics/qutip/metadata.xml b/sci-physics/qutip/metadata.xml new file mode 100644 index 000000000000..fb7fc53aee2b --- /dev/null +++ b/sci-physics/qutip/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>hendrik@consetetur.de</email> + <name>Hendrik v. Raven (lorem_ipsum)</name> + </maintainer> + <maintainer type="project"> + <email>sci@gentoo.org</email> + <name>Gentoo Science Project</name> + </maintainer> + <maintainer type="project"> + <email>proxy-maint@gentoo.org</email> + <name>Proxy Maintainers</name> + </maintainer> + <longdescription lang="en"> + QuTiP is open-source software for simulating the dynamics of open quantum systems. The QuTiP library depends on the excellent Numpy, Scipy, and Cython numerical packages. In addition, graphical output is provided by Matplotlib. QuTiP aims to provide user-friendly and efficient numerical simulations of a wide variety of Hamiltonians, including those with arbitrary time-dependence, commonly found in a wide range of physics applications such as quantum optics, trapped ions, superconducting circuits, and quantum nanomechanical resonators. + </longdescription> + <upstream> + <remote-id type="github">qutip/qutip</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/qutip/qutip-4.2.0.ebuild b/sci-physics/qutip/qutip-4.2.0.ebuild new file mode 100644 index 000000000000..e5514134e279 --- /dev/null +++ b/sci-physics/qutip/qutip-4.2.0.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{5,6} ) + +inherit distutils-r1 toolchain-funcs + +DESCRIPTION="Simulating dynamics of open quantum systems in Python." +HOMEPAGE="http://qutip.org" +SRC_URI="https://github.com/qutip/qutip/archive/v$PV.tar.gz -> $P.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="openmp test" + +RDEPEND="dev-python/cython[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] +" +DEPEND="${RDEPEND} + test? ( dev-python/nose[${PYTHON_USEDEP}] ) +" + +pkg_pretend() { + [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp +} + +pkg_setup() { + [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp +} + +python_prepare_all() { + sed -i setup.py \ + -e 's/_compiler_flags = .*$/_compiler_flags = []/' || die + + distutils-r1_python_prepare_all +} + +python_configure_all() { + use openmp && mydistutilsargs=( --with-openmp ) +} + +python_test() { + cd "${BUILD_DIR}"/lib* || die + ${EPYTHON} -c "import qutip.testing as qt ; qt.run()" || die +} diff --git a/sci-physics/reduze/Manifest b/sci-physics/reduze/Manifest new file mode 100644 index 000000000000..07a1e14d1111 --- /dev/null +++ b/sci-physics/reduze/Manifest @@ -0,0 +1,9 @@ +AUX reduze-2.0.9-gcc6.patch 2077 SHA256 b8926d9fe3e6ca68f703a9cb87a81aaa44238a0a8a0c348a6c9b3ff839468b20 SHA512 3636a1f22e129b7ceea50add15d52e96b96dfa28629b46e6bd1fd5e51f47a8f0d4f232e2b70858fa460cb0c9e842e7325df5a5d6bcabf6b17805a9c8a03d8cc4 WHIRLPOOL 8edbdf79c047930326017ae5e60cd23ed886121c8ad3c89ce078eece47d06769c7fb9f5fb28ce7c322b7d5ec2624799a321ec30a65b5461a03549faff91a63d4 +AUX reduze-2.1-gcc6.patch 850 SHA256 8d7ad4b374c827b664d3aee215205727b3de1c5c0ec66199c06ca559b78cf753 SHA512 2df799698e9aab61c00f36cfa9b8e4806b9856180ba0621e4e4a30b485018a5fc9a1195cfe5579910b4f946119ec1a205b3e7778417bf205c1dd3ab6227f3813 WHIRLPOOL 37f11078d916606d8dea855642e825a2f374cf4b4670414f0a317bf2f1bf6e6abb56f0279f27532e4beda83fc513ce520996fdd960206107dbad56998e0b7f88 +DIST reduze-2.0.9.tar.gz 568570 SHA256 e56494519faffa381f16c8c9b439e9c17485392d47b836ef372d3c4ff451e67a SHA512 69818d7edaf3c69996d3f703401865f67722ec8d33b285642c71030f2852273b4b4028a00f0c639589cb801def739f93a05d504d4fb2edf228674962897d5f01 WHIRLPOOL 1aa84d755668badf01c077b3e9c63cf1c68c5f37f438875c3f3de11804013e551a92f98c7aacd5b8ea155e1540023d4273f1ceb98ea4e7551de9fe7613b18021 +DIST reduze-2.1.tar.gz 650423 SHA256 757556ba0b05b7b4c14091ce4a54f79259b530ed22180417b41f9ae443378ea7 SHA512 e27f711639fe4b95c2aef4e73a7f6d9dd1574d1a62bc531d0f5177c505ffd353193548f29332f3b5320d4907bebd404ef082d3fea1dd392b83573d085b4a795a WHIRLPOOL 5964aa240132b2e002039486977ad17c27c5a027a0d7339cae1d9979e394b5a236cf3894eef774bee5d79de272eea1aced1988dd53a986035b3ae1dfbb6393b5 +EBUILD reduze-2.0.9.ebuild 1422 SHA256 03eed8be3f5e5b94ddfda2e98902f698358a7e99c85ab508ddd6b8c562188307 SHA512 48c183662fb22751e0aa55a8be99a0d174fa67a5ac33f16e85075b982a584692e909a36d460c196c36195cce34dd4dc0f3a3e3cce392f03f21f36acbb280160d WHIRLPOOL c2c129550dc93effb86c4b8d900149989f658b1c1c1fca1d94a04d2798d35f7ba63d1c692e22bae7a910a9e6a0fdc9c1bc8be62ee87c001350676e2516358d83 +EBUILD reduze-2.1.ebuild 1429 SHA256 2d6cc0ac62edc32536e5176317c6207e692e818c6d113cdc3e8ad78d4ac76beb SHA512 db7df515fe96c676a9ee84708c5d61ae1a7092430f15c4f8eb06c8af5ee4dc85c073f19a3997500e73934136d905e3d563bb83c85a307fecfe64483b24df934b WHIRLPOOL c149b013ae09a785cfeb5848c2f734a8b25ab68d225ade310065eb77b9d3068bd885fc06aa3f4819f478149fb42befc778eccd5578e23e69e6b1a8d87b641cbf +MISC ChangeLog 2699 SHA256 63179c7409df0f47290b55f212ad120b81ec71a5252fa270d24872d3f114a7dc SHA512 1f06df35d44a05a2d5c0ede827eb4d2982bf8fbf782451ac918ac103fc76e03b3a9309776d728f947a283a613d7b73bf571d304193bf83cfbfbc09d58da2ee29 WHIRLPOOL 8a41b2b5801d0224de4b04e95146d059f614e822b269b4d0181e9eddf3afeb049bd0e61a11b517d4c5d2b46333c477791d27fa4483bc7c47078226f6456ea242 +MISC ChangeLog-2015 840 SHA256 684b99df70a9bdd93b6ba39d5d5f65ba126461b39c725a5c280b2c4ca7667925 SHA512 aec87f5661a5c71ed908eac254603816aecf85bf0ee738dea530fccca3b9992d04e47884bed1ab0c1df7a260794d7272b9924e7162ffecdbaa1d00a765e8bce5 WHIRLPOOL a64f7b1c874a568ca2dcee658e1136c93790984bbaa442072731832dc23649a78f796945e84049c133fe903c88ee2fda7d2c53750717a67fc54a888e37366ad6 +MISC metadata.xml 454 SHA256 a8251d92622c824b5afb570a6a73ddac217f9c0532cd475735c30baedcc7c18c SHA512 2c4ba8ba43848a07834cb7f31a474f7c236356ef228e87db2870a4d19c3d2edf29189fab25f05efe70c004a3fdb7c2fd065687b104fe33d1fd20626c6aea4372 WHIRLPOOL facce8bba364b5b0c52d1a532f862e505d4046a6d9cd9563670d069dec636577f4fc2a137db838e58824b973c62d407ba2713df786be55d53635c34bbb2f831b diff --git a/sci-physics/reduze/files/reduze-2.0.9-gcc6.patch b/sci-physics/reduze/files/reduze-2.0.9-gcc6.patch new file mode 100644 index 000000000000..9864163cdec9 --- /dev/null +++ b/sci-physics/reduze/files/reduze-2.0.9-gcc6.patch @@ -0,0 +1,58 @@ +--- a/reduze/amplitude.cpp ++++ b/reduze/amplitude.cpp +@@ -782,7 +782,7 @@ + + ex resultLeadingNc = result; + for (exset::const_iterator it = found.begin(); it != found.end(); ++it) { +- VERIFY(is_a<function>(*it) && ex_to<function>(*it).get_name() == "Color"); ++ VERIFY(is_a<GiNaC::function>(*it) && ex_to<GiNaC::function>(*it).get_name() == "Color"); + VERIFY(is_a<lst>(it->op(0))); + ex res(1); + for (size_t i = 0; i < it->op(0).nops(); ++i) +@@ -823,7 +823,7 @@ + timer.restart(); + exmap m; + for (exset::const_iterator it = found.begin(); it != found.end(); ++it) { +- VERIFY(is_a<function>(*it) && ex_to<function>(*it).get_name() == "Lorentz"); ++ VERIFY(is_a<GiNaC::function>(*it) && ex_to<GiNaC::function>(*it).get_name() == "Lorentz"); + VERIFY(is_a<lst>(it->op(0))); + + ex res(1); +--- a/reduze/files.cpp ++++ b/reduze/files.cpp +@@ -420,7 +420,7 @@ + get_filename_sectormappings(m.integralfamily()->name()); + ofstream file(file_name.c_str()); + if (!file) +- ABORT("Can't write to " << file); ++ ABORT("Can't write to " << file_name); + os << YAML::BeginMap << YAML::Key << "sectormappings" << YAML::Value; + os << m << YAML::EndMap; + file << os.c_str(); +@@ -617,7 +617,7 @@ + + bool is_readable_file(const string& filename) { + ifstream is(filename.c_str()); +- bool ok = is; ++ bool ok = !is.fail(); + is.close(); + return ok; + } +--- a/reduze/sectormappings.cpp ++++ b/reduze/sectormappings.cpp +@@ -757,13 +757,13 @@ + const Node& z_node = node["zero_sectors"]; + for (Iterator n = z_node.begin(); n != z_node.end(); ++n) + for (Iterator s = n.second().begin(); s != n.second().end(); ++s) +- m.zero_sectors_.insert(*s); ++ m.zero_sectors_.insert((const int) *s); + + if (node.FindValue("sectors_without_graph")) { + const Node& ng_node = node["sectors_without_graph"]; + for (Iterator n = ng_node.begin(); n != ng_node.end(); ++n) + for (Iterator s = n.second().begin(); s != n.second().end(); ++s) +- m.sectors_without_graph_.insert(*s); ++ m.sectors_without_graph_.insert((const int) *s); + } + + const Node& rel_node = node["sector_relations"]; diff --git a/sci-physics/reduze/files/reduze-2.1-gcc6.patch b/sci-physics/reduze/files/reduze-2.1-gcc6.patch new file mode 100644 index 000000000000..3b347ef413c3 --- /dev/null +++ b/sci-physics/reduze/files/reduze-2.1-gcc6.patch @@ -0,0 +1,29 @@ +--- a/reduze/files.cpp ++++ b/reduze/files.cpp +@@ -723,7 +723,7 @@ + string file_name_tmp = file_name + ".tmp"; + ofstream file(file_name_tmp.c_str()); + if (!file) +- ABORT("Can't write to " << file); ++ ABORT("Can't write to " << file_name_tmp); + Emitter os; + os << BeginMap; + os << Key << "crossings" << Value; +@@ -752,7 +752,7 @@ + string file_name_tmp = file_name + ".tmp"; + ofstream file(file_name_tmp.c_str()); + if (!file) +- ABORT("Can't write to " << file); ++ ABORT("Can't write to " << file_name_tmp); + os << YAML::BeginMap << YAML::Key << "sectormappings" << YAML::Value; + os << m << YAML::EndMap; + file << os.c_str(); +@@ -1036,7 +1036,7 @@ + + bool is_readable_file(const string& filename) { + ifstream is(filename.c_str()); +- bool ok = is; ++ bool ok = !is.fail(); + is.close(); + return ok && !is_readable_directory(filename); + } diff --git a/sci-physics/reduze/metadata.xml b/sci-physics/reduze/metadata.xml new file mode 100644 index 000000000000..4b1d47af2649 --- /dev/null +++ b/sci-physics/reduze/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="person"> + <email>grozin@gentoo.org</email> + <name>Andrey Grozin</name> +</maintainer> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + A program for reducing Feynman integrals +</longdescription> +</pkgmetadata> diff --git a/sci-physics/reduze/reduze-2.0.9.ebuild b/sci-physics/reduze/reduze-2.0.9.ebuild new file mode 100644 index 000000000000..3c0713e8e163 --- /dev/null +++ b/sci-physics/reduze/reduze-2.0.9.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils + +DESCRIPTION="Program for reducing Feynman integrals" +HOMEPAGE="http://reduze.hepforge.org/" +SRC_URI="http://reduze.hepforge.org/download/${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="berkdb doc mpi" + +RDEPEND=">=sci-mathematics/ginac-1.4.1 + berkdb? ( sys-libs/db[cxx] ) + mpi? ( virtual/mpi )" +DEPEND="${RDEPEND} + virtual/pkgconfig + doc? ( app-doc/doxygen )" + +DOCS=( ChangeLog README ) + +src_prepare() { + epatch "${FILESDIR}"/${P}-gcc6.patch + + # gentoo doc directory + sed -i \ + -e "s:share/reduze:share/doc/${PF}:g" \ + CMakeLists.txt || die + use doc || sed -i -e '/share/d' CMakeLists.txt + # prefix fix + sed -i \ + -e "s:/usr:${EPREFIX}/usr:g" \ + reduze/CMakeLists.txt || die + + # remove bundled yaml-cpp + # no: it does not build. is it patched? + # sed -i -e '/add_subdirectory ("yaml")/d' CMakeLists.txt || die +} + +src_configure() { + local mycmakeargs=( + -DUSE_HASH_TABLE=ON + $(cmake-utils_use berkdb USE_DATABASE) + $(cmake-utils_use mpi USE_MPI) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile all $(use doc && echo doc) +} + +src_test() { + cd "${CMAKE_BUILD_DIR}" + emake check + use mpi && emake check_mpi +} + +src_install() { + cmake-utils_src_install + use doc && dohtml -r "${CMAKE_BUILD_DIR}"/doc/code/html/* +} diff --git a/sci-physics/reduze/reduze-2.1.ebuild b/sci-physics/reduze/reduze-2.1.ebuild new file mode 100644 index 000000000000..ad6f52292b44 --- /dev/null +++ b/sci-physics/reduze/reduze-2.1.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils + +DESCRIPTION="Program for reducing Feynman integrals" +HOMEPAGE="http://reduze.hepforge.org/" +SRC_URI="http://reduze.hepforge.org/download/${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="berkdb doc mpi" + +RDEPEND=">=sci-mathematics/ginac-1.4.1 + berkdb? ( sys-libs/db:=[cxx] ) + mpi? ( virtual/mpi )" +DEPEND="${RDEPEND} + virtual/pkgconfig + doc? ( app-doc/doxygen )" + +PATCHES=( "${FILESDIR}"/${P}-gcc6.patch ) + +src_prepare() { + cmake-utils_src_prepare + # gentoo doc directory + sed -i \ + -e "s:share/reduze:share/doc/${PF}:g" \ + CMakeLists.txt || die + if ! use doc ; then + sed -i -e '/share/d' CMakeLists.txt || die + fi + # prefix fix + sed -i \ + -e "s:/usr:${EPREFIX}/usr:g" \ + reduze/CMakeLists.txt || die + + # remove bundled yaml-cpp + # no: it does not build. is it patched? + # sed -i -e '/add_subdirectory ("yaml")/d' CMakeLists.txt || die +} + +src_configure() { + local mycmakeargs=( + -DUSE_HASH_TABLE=ON + -DUSE_DATABASE=$(usex berkdb) + -DUSE_MPI=$(usex mpi) + ) + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile all $(usev doc) +} + +src_test() { + cmake-utils_src_compile check + use mpi && cmake-utils_src_compile check_mpi +} + +src_install() { + use doc && HTML_DOCS+=( "${BUILD_DIR}"/doc/code/html/. ) + cmake-utils_src_install +} diff --git a/sci-physics/rivet/Manifest b/sci-physics/rivet/Manifest new file mode 100644 index 000000000000..356f3a9ac7e0 --- /dev/null +++ b/sci-physics/rivet/Manifest @@ -0,0 +1,7 @@ +DIST Rivet-2.3.0.tar.bz2 2742948 SHA256 dd07702981d586e4b97b0fa56ae08cd08a631a952322a9b52e7622a46a7741ab SHA512 b51b77f80d69156dead899312cad838bc03479a072e163df50262e86790503515f8ab8af93723c3cbd33007d9812aa10581b2c960d92bc1fcf5031d27018d239 WHIRLPOOL ce9e5dd34ba9b53de192aee39bcd94565a62a328bd35dcb1ef810cc7b129e9ae6529fc8f970889f7a6970567bdd0f040d15fc5bbb83ec22e38daccb34cbb4fdf +DIST Rivet-2.5.2.tar.bz2 3005023 SHA256 70aa27764a14159c94c0b753a0c3d3600ac669def398cb2d8a6c63ae17704f05 SHA512 dd84143eb5d4b24ae2e5ace175e349fe48b4b5e6a47b3aa031a4144c635f016e8bbd731ed3f96b5c2f52c7df8ff0f1db70750fc45381bdfcdd469fd4c058beef WHIRLPOOL cd17c53ba337cc5f6e9d747f37640b86958844cfbf328a99350a3e7850e1ae158aab6cbedd8791da3f5f56084ed219a8ff7d9b2bc3d9c73848531f0d868c475a +DIST refs.bib 16907 SHA256 bc6f313c09d8b7a8a2dd1ff448ba1a51b4b138428fbcc4447f9effff67286e40 SHA512 64755e6aeaa1f0b3fb76a33ffdf226bcd42ee597a78a8d458b728f0e6f576d4dafbb276a0498c3b573d23054ccbf54ada6f6c12faf52dbfbeef2372094d01181 WHIRLPOOL f026ee892cd3456c4723fa982f6d739a0c126481bfdd6dd16a20e4f0d6fdfa34a0630c48115c6597eda15d0fa8cc12b8069b0ce1d12bc1acdffdc304acb4888f +EBUILD rivet-2.3.0.ebuild 1305 SHA256 bbdcd1f29aca0ad141d9ed6892911e9f1119a9c71246cef0b08e4b8dc03b6d73 SHA512 d366357c41ed61d2fc7937e014d92dea94b6b7a47913694048276d4a041cdc2e185849869c9b21db0ff2a503dc11bde70a4cf2a86a9116e992a21a27e1467193 WHIRLPOOL 2ddcce4a66cb9380197163d6a7c9e30093ab8d7c8c1fe3c91374bf678b24994a4594c296a6235276300e50995ace95d044125b878a783b864e4b533dc4b0996d +EBUILD rivet-2.5.2.ebuild 1768 SHA256 aa2e10f81779ae0ba79cdf7e4334ffd16d45ad88cab2b63d250b95ff8abd9841 SHA512 8bf89e54ce4279b5703b440a5c5dafddb1559b3aab08b5bc3ed1028bd4467c31f5a996cf9d919b0426ef88996fc63aea35393f6ad7c70934074dde876bf675b7 WHIRLPOOL bc3ffe07423df1e5db54496ed6e063d15f7923825d7f8adc258521741be7d5ff7b4e54a8b48773945656ed52a78bd495a9b9958fbbde76399ab6f9bb0df104b1 +MISC ChangeLog 1712 SHA256 7b63118e676a826768232e59376cd1874bc95de383a10f57ca65417cbbf93663 SHA512 e5efcc7f6b4523973c3f9d99d373a3fe88213ad462cb20dae56730f33c72da0b5a441550c35f775b14e984afdc55b37b79d66de98073dfbd52f527e88870e36a WHIRLPOOL c71c228c6ab450320a5dfa68c0ccc7ff11403a9fab2f5f85ff3597c1f3f8703a26696c24ec3209bad5ec93708c58897096358ad3bda08b6524f077feaeb0b595 +MISC metadata.xml 830 SHA256 a1c82602710263487fd5a837266e16c5a9cb8cfbba09a798180f76fbb9440ea3 SHA512 a13f39174c4d4e6ef47a2f7c3b3cdbf67f0cdd72f18bf15d6bc37c41c1cf33286219c9030ba525694cb5f6cc28f0ace5b839610904415735e502494dbdd3f29d WHIRLPOOL 6374f4efba7e06409688f70f9269992f0b97a2851ab10d017d6aebd5fc08875351310cb2e24ab4431387a59b048324328236d1f4d1901308fcc9ab679ca322cf diff --git a/sci-physics/rivet/metadata.xml b/sci-physics/rivet/metadata.xml new file mode 100644 index 000000000000..532272a0d9cd --- /dev/null +++ b/sci-physics/rivet/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription> + The Rivet project (Robust Independent Validation of Experiment and + Theory) is a toolkit for validation of Monte Carlo event + generators. It provides a large (and ever growing) set of + experimental analyses useful for MC generator development, + validation, and tuning, as well as a convenient infrastructure for + adding your own analyses. Rivet is the most widespread way by which + analysis code from the LHC and other high-energy collider + experiments is preserved for comparison to and development of future + theory models. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/rivet/rivet-2.3.0.ebuild b/sci-physics/rivet/rivet-2.3.0.ebuild new file mode 100644 index 000000000000..63dece0d0092 --- /dev/null +++ b/sci-physics/rivet/rivet-2.3.0.ebuild @@ -0,0 +1,59 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_IN_SOURCE_BUILD=1 +AUTOTOOLS_AUTORECONF=1 +PYTHON_COMPAT=( python2_7 ) + +inherit python-single-r1 autotools-utils bash-completion-r1 + +MYP=Rivet-${PV} + +DESCRIPTION="Toolkit for validation of Monte Carlo HEP event generators" +HOMEPAGE="http://rivet.hepforge.org/" + +SRC_URI="http://www.hepforge.org/archive/${PN}/${MYP}.tar.bz2" +LICENSE="GPL-2" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc python static-libs" + +RDEPEND=" + dev-libs/boost:0= + sci-libs/gsl:0= + sci-physics/fastjet:0=[plugins] + sci-physics/hepmc:0= + sci-physics/yoda:0=[python] + python? ( ${PYTHON_DEPS} )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[latex,dot] ) + python? ( dev-python/cython[${PYTHON_USEDEP}] )" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MYP}" + +pkg_setup() { + use python && python-single-r1_pkg_setup +} + +src_configure() { + local myeconfargs=( + $(use_enable python pyext) + ) + autotools-utils_src_configure +} + +src_compile() { + autotools-utils_src_compile + use doc && doxygen Doxyfile +} + +src_install() { + autotools-utils_src_install + newbashcomp "${ED}"/usr/share/Rivet/rivet-completion rivet + use doc && dohtml -r doxy/html/* && dodoc doc/rivet-manual.pdf +} diff --git a/sci-physics/rivet/rivet-2.5.2.ebuild b/sci-physics/rivet/rivet-2.5.2.ebuild new file mode 100644 index 000000000000..86e41340c503 --- /dev/null +++ b/sci-physics/rivet/rivet-2.5.2.ebuild @@ -0,0 +1,79 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) + +inherit autotools bash-completion-r1 python-single-r1 + +DESCRIPTION="Toolkit for validation of Monte Carlo HEP event generators" +HOMEPAGE="http://rivet.hepforge.org/" + +SRC_URI="http://www.hepforge.org/archive/${PN}/${P^}.tar.bz2 + doc? ( https://rivet.hepforge.org/trac/export/8a05acecd26c18f368f4b748da2d5aa2db46be6c/doc/refs.bib )" +LICENSE="GPL-2" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc python static-libs" +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +RDEPEND=" + dev-libs/boost:= + sci-libs/gsl:= + sci-physics/fastjet[plugins] + sci-physics/hepmc + >=sci-physics/yoda-1.5.0[python] + python? ( ${PYTHON_DEPS} )" +DEPEND="${RDEPEND} + doc? ( app-doc/doxygen[latex,dot] ) + python? ( dev-python/cython[${PYTHON_USEDEP}] )" + +S="${WORKDIR}/${P^}" + +pkg_setup() { + use python && python-single-r1_pkg_setup +} + +src_unpack() { + unpack "${P^}.tar.bz2" + + if use doc; then + # refs.bib is missing in tarball (reported upstream) + cp "${DISTDIR}"/refs.bib "${S}"/doc || die + fi +} + +src_prepare() { + default + + # Install rivet-manual.pdf to docdir intead of pkgdatadir + sed -i '/pkgdata_DATA = $(DOCS)/s/pkgdata/doc/' doc/Makefile.am || die + eautoreconf +} + +src_configure() { + econf \ + $(use_enable python pyext) \ + $(use_enable static-libs static) \ + $(use_enable doc doxygen) \ + $(use_enable doc pdfmanual) +} + +src_compile() { + use doc && export VARTEXFONTS="${T}/fonts" + default + + if use doc; then + doxygen Doxyfile || die + HTML_DOCS+=( doxy/html/. ) + fi +} + +src_install() { + default + + newbashcomp "${ED%/}"/usr/share/Rivet/rivet-completion rivet + rm -f "${ED%/}"/usr/share/Rivet/rivet-completion || die +} diff --git a/sci-physics/root/Manifest 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63e17ce295a24d4b21da582a3510511535d97f1bed7ea80c64a9432a81a312243506c46fe561672406c0cf15b35cc82fc2d8849ca4b1be934adf50be83fc2faf diff --git a/sci-physics/root/files/proofd.confd b/sci-physics/root/files/proofd.confd new file mode 100644 index 000000000000..81720a7eb335 --- /dev/null +++ b/sci-physics/root/files/proofd.confd @@ -0,0 +1,12 @@ +# conf.d file for proof daemon +# +# Please refer to the proofd(1) man(1) page for more information on +# command line parameters. +# +PROOFD_OPTS= + +# Specify your base of your PROOF directory here. If left blank, it +# will use the system default (e.g., /usr/share/root/proof). +# Note, however, that ROOT recommends that this directory is shared (via +# NFS or similar) among all the nodes of the cluster. +PROOF_DIR= diff --git a/sci-physics/root/files/proofd.initd b/sci-physics/root/files/proofd.initd new file mode 100644 index 000000000000..ee865133cb25 --- /dev/null +++ b/sci-physics/root/files/proofd.initd @@ -0,0 +1,25 @@ +#!/sbin/openrc-run +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +depend() { + need root-file-server + use logger +} + +start() { + ebegin "Starting parallel ROOT facility server" + start-stop-daemon --start --quiet \ + --pidfile /var/run/proofd.pid \ + --exec /usr/bin/proofd -- ${PROOFD_OPTS} ${PROOF_DIR} + pidof /usr/bin/proofd > /var/run/proofd.pid + eend $? +} + +stop() { + ebegin "Stopping parallel ROOT facility server" + start-stop-daemon --stop --quiet \ + --pidfile /var/run/proofd.pid \ + --exec /usr/bin/proofd + eend $? +} diff --git a/sci-physics/root/files/root-5.28.00b-glibc212.patch b/sci-physics/root/files/root-5.28.00b-glibc212.patch new file mode 100644 index 000000000000..a365431396f5 --- /dev/null +++ b/sci-physics/root/files/root-5.28.00b-glibc212.patch @@ -0,0 +1,11 @@ +--- root.orig/net/auth/src/TAFS.cxx 2010-09-14 03:22:22.647915854 +0400 ++++ root/net/auth/src/TAFS.cxx 2010-09-14 03:22:39.034599899 +0400 +@@ -11,6 +11,7 @@ + + #ifndef WIN32 + # include <unistd.h> ++# include <sys/stat.h> + #else + # define ssize_t int + # include <io.h> + diff --git a/sci-physics/root/files/root-5.32.00-afs.patch b/sci-physics/root/files/root-5.32.00-afs.patch new file mode 100644 index 000000000000..2bf31798e6e0 --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-afs.patch @@ -0,0 +1,33 @@ +--- root/net/auth/src/TAFS.cxx.orig 2011-12-04 00:56:29.405007770 +0400 ++++ root/net/auth/src/TAFS.cxx 2011-12-04 00:56:35.534709259 +0400 +@@ -138,7 +138,7 @@ + } else { + if (isatty(0) != 0 && isatty(1) != 0) { + Gl_config("noecho", 1); +- pw = Getline((char *) prompt.Data()); ++ pw = const_cast<char *>( Getline((char *) prompt.Data()) ); + Gl_config("noecho", 0); + } else { + Warning("TAFS", "not tty: cannot prompt for passwd: failure"); +--- root/core/clib/src/strlcat.c.orig 2011-12-04 01:49:26.495179487 +0400 ++++ root/core/clib/src/strlcat.c 2011-12-04 01:50:41.407524763 +0400 +@@ -38,7 +38,7 @@ + * Returns strlen(src) + MIN(siz, strlen(initial dst)). + * If retval >= siz, truncation occurred. + */ +-size_t ++size_t __attribute__((weak)) + strlcat(char *dst, const char *src, size_t siz) + { + register char *d = dst; +--- root/core/clib/src/strlcpy.c.orig 2011-12-04 01:49:34.329797251 +0400 ++++ root/core/clib/src/strlcpy.c 2011-12-04 01:50:49.051151843 +0400 +@@ -36,7 +36,7 @@ + * will be copied. Always NUL terminates (unless siz == 0). + * Returns strlen(src); if retval >= siz, truncation occurred. + */ +-size_t ++size_t __attribute__((weak)) + strlcpy(char *dst, const char *src, size_t siz) + { + register char *d = dst; diff --git a/sci-physics/root/files/root-5.32.00-cfitsio.patch b/sci-physics/root/files/root-5.32.00-cfitsio.patch new file mode 100644 index 000000000000..853c3f39f207 --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-cfitsio.patch @@ -0,0 +1,13 @@ +--- configure.orig 2012-01-19 23:44:44.127607638 +0100 ++++ configure 2012-01-20 00:19:20.420652913 +0100 +@@ -3435,9 +3435,7 @@ + cfitsioinc=$found_hdr + cfitsioincdir=$found_dir + +- # At this time, libcfitsio.a should always be prefered over .so, +- # to avoid forcing users to install cfitsio. +- check_library "libcfitsio cfitsio" "no" "$cfitsiolibdir" \ ++ check_library "libcfitsio cfitsio" "yes" "$cfitsiolibdir" \ + $CFITSIO ${CFITSIO:+$CFITSIO/lib} ${CFITSIO:+$CFITSIO/.libs} \ + ${finkdir:+$finkdir/lib} \ + /usr/local/lib /usr/lib /opt/cfitsio/lib diff --git a/sci-physics/root/files/root-5.32.00-chklib64.patch b/sci-physics/root/files/root-5.32.00-chklib64.patch new file mode 100644 index 000000000000..979220f02f35 --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-chklib64.patch @@ -0,0 +1,24 @@ +bug fix for #406817 +--- configure.orig 2012-02-29 19:46:41.000000000 +0400 ++++ configure 2012-03-22 03:28:43.458968696 +0400 +@@ -441,14 +441,13 @@ + fi + else + if file $filearg $chklib64 | grep 'ASCII' > /dev/null 2>& 1 ; then +- check_link $chklib64 +- ret=$link_result +- else +- logmsg " file $filearg $chklib64 | grep '64-bit'" +- if file $filearg $chklib64 | grep '64-bit' > /dev/null 2>& 1 ; then +- ret=1 +- fi ++ # get real binary .so name from .so ld script ++ chklib64=$(gawk '($1 == "GROUP") { print $3 }' $chklib64) + fi ++ logmsg " file $filearg $chklib64 | grep '64-bit'" ++ if file $filearg $chklib64 | grep '64-bit' > /dev/null 2>& 1 ; then ++ ret=1 ++ fi + fi + logmsg " result: $ret" + if test $ret -eq 1 ; then diff --git a/sci-physics/root/files/root-5.32.00-dotfont.patch b/sci-physics/root/files/root-5.32.00-dotfont.patch new file mode 100644 index 000000000000..85d6dea7655e --- /dev/null +++ b/sci-physics/root/files/root-5.32.00-dotfont.patch @@ -0,0 +1,58 @@ +--- root/html/src/TClassDocOutput.cxx.orig 2012-05-25 16:18:10.000000000 +0400 ++++ root/html/src/TClassDocOutput.cxx 2012-05-29 21:36:53.813593012 +0400 +@@ -625,7 +625,7 @@ + << "size=\"8,10\";" << endl + << "ratio=auto;" << endl + << "margin=0;" << endl +- << "node [shape=plaintext,fontsize=40,width=4,height=0.75];" << endl ++ << "node [shape=plaintext,fontsize=40,width=4,height=0.75,fontname=\"DejaVu Serif\"];" << endl + << "\"" << fCurrentClass->GetName() << "\" [shape=ellipse];" << endl; + + std::stringstream ssDep; +@@ -704,7 +704,7 @@ + outdot << ";" << endl; + } else if (writeAndMoreFor) { + outdot << " \"...andmore" << writeAndMoreFor->GetName() +- << "\" [label=\"...and more\",fontname=\"Times-Italic\",fillcolor=lightgrey,style=filled];" << endl; ++ << "\" [label=\"...and more\",fontname=\"DejaVu Serif Italic\",fillcolor=lightgrey,style=filled];" << endl; + } + } + if (!levelExists) break; +@@ -733,7 +733,7 @@ + << "ranksep=0.1;" << endl + << "nodesep=0;" << endl + << "margin=0;" << endl; +- outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10];" << endl; ++ outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10,fontname=\"DejaVu Serif\"];" << endl; + + std::stringstream ssDep; + const int numColumns = 3; +@@ -939,7 +939,7 @@ + << "ranksep=0;" << endl + << "nodesep=0;" << endl + << "size=\"8,10\";" << endl +- << "node [fontsize=20,shape=plaintext];" << endl; ++ << "node [fontsize=20,shape=plaintext,fontname=\"DejaVu Serif\"];" << endl; + + for (std::list<std::string>::iterator iFile = listFilesToParse.begin(); + iFile != listFilesToParse.end(); ++iFile) { +@@ -999,7 +999,8 @@ + << "ranksep=0.7;" << endl + << "nodesep=0.3;" << endl + << "size=\"8,8\";" << endl +- << "ratio=compress;" << endl; ++ << "ratio=compress;" << endl ++ << "node [fontname=\"DejaVu Serif\"];" << endl; + + TString libs(fCurrentClass->GetSharedLibs()); + outdot << "\"All Libraries\" [URL=\"LibraryDependencies.html\",shape=box,rank=max,fillcolor=lightgray,style=filled];" << endl; +@@ -1109,7 +1110,8 @@ + + dotout << "digraph G {" << endl + << "ratio=auto;" << endl +- << "rankdir=RL;" << endl; ++ << "rankdir=RL;" << endl ++ << "node [fontname=\"DejaVu Serif\"];" << endl; + + // loop on all classes + TClassDocInfo* cdi = 0; diff --git a/sci-physics/root/files/root-5.34.05-nobyte-compile.patch b/sci-physics/root/files/root-5.34.05-nobyte-compile.patch new file mode 100644 index 000000000000..ec67a15887f6 --- /dev/null +++ b/sci-physics/root/files/root-5.34.05-nobyte-compile.patch @@ -0,0 +1,137 @@ +diff -Naur root.as-needed/Makefile root/Makefile +--- a/Makefile.orig 2013-02-15 02:27:56.000000000 +0400 ++++ b/Makefile 2013-02-23 02:22:14.556465852 +0400 +@@ -1258,10 +1258,7 @@ + for lib in $(RFLX_GRFLXPY); do \ + rm -f $(DESTDIR)$(LIBDIR)/$${lib#lib/}; \ + done; \ +- for lib in $(RFLX_GRFLXPYC); do \ +- rm -f $(DESTDIR)$(LIBDIR)/$${lib#lib/}; \ +- done; \ +- if test "x$(RFLX_GRFLXPY)$(RFLX_GRFLXPYC)" != "x"; then \ ++ if test "x$(RFLX_GRFLXPY)" != "x"; then \ + dir=$(subst lib/,,$(RFLX_GRFLXDD)); \ + while test "x$${dir}" != "x" && \ + test -d $(DESTDIR)$(LIBDIR)/$${dir} && \ +diff -Naur root.as-needed/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk +--- root.as-needed/bindings/pyroot/Module.mk 2011-07-10 10:42:48.991561304 +0400 ++++ root/bindings/pyroot/Module.mk 2011-07-10 10:43:21.493339703 +0400 +@@ -48,8 +48,6 @@ + ROOTPY := $(subst $(MODDIR),$(LPATH),$(ROOTPYS)) + $(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@ + endif +-ROOTPYC := $(ROOTPY:.py=.pyc) +-ROOTPYO := $(ROOTPY:.py=.pyo) + + # used in the main Makefile + ALLHDRS += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH)) +@@ -68,10 +66,8 @@ + include/%.h: $(PYROOTDIRI)/%.h + cp $< $@ + +-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )' +-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )' + +-$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \ ++$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) \ + $(ROOTLIBSDEP) $(PYTHONLIBDEP) + @$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \ + "$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \ +@@ -113,7 +109,7 @@ + + distclean-$(MODNAME): clean-$(MODNAME) + @rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \ +- $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \ ++ $(ROOTPY) $(PYROOTMAP) \ + $(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64) + + distclean:: distclean-$(MODNAME) +diff -Naur root.as-needed/build/package/debian/rules root/build/package/debian/rules +--- root.as-needed/build/package/debian/rules 2011-07-10 10:42:49.241549346 +0400 ++++ root/build/package/debian/rules 2011-07-10 10:48:06.989670589 +0400 +@@ -691,10 +691,6 @@ + -X$(SYSCONFDIR)/root/system.rootauthrc \ + -X$(SYSCONFDIR)/root/system.rootdaemonrc \ + -X$(PREFIX)/lib/root/$(SOVERS)/libAfterImage.a \ +- -X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyc \ +- -X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyo \ +- -X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyc \ +- -X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyo \ + -X$(PREFIX)/lib/root/$(SOVERS)/cint7 \ + -X$(PREFIX)/include/root/Minuit2 + # $(foreach i, \ +diff -Naur root.as-needed/cint/cintex/Module.mk root/cint/cintex/Module.mk +--- root.as-needed/cint/cintex/Module.mk 2011-07-10 10:42:49.104889217 +0400 ++++ root/cint/cintex/Module.mk 2011-07-10 10:43:21.496672876 +0400 +@@ -31,10 +31,6 @@ + CINTEXPY := $(subst $(MODDIR)/python,$(LPATH),$(CINTEXPYS)) + $(LPATH)/%.py: $(MODDIR)/python/%.py; cp $< $@ + endif +-ifneq ($(BUILDPYTHON),no) +-CINTEXPYC := $(CINTEXPY:.py=.pyc) +-CINTEXPYO := $(CINTEXPY:.py=.pyo) +-endif + + # used in the main Makefile + ALLHDRS += $(patsubst $(MODDIRI)/Cintex/%.h,include/Cintex/%.h,$(CINTEXH)) +@@ -86,8 +82,6 @@ + fi) + cp $< $@ + +-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )' +-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )' + + $(CINTEXLIB): $(CINTEXO) $(CINTEXPY) $(CINTEXPYC) $(CINTEXPYO) \ + $(ORDER_) $(subst $(CINTEXLIB),,$(MAINLIBS)) $(CINTEXLIBDEP) +diff -Naur root.as-needed/cint/reflex/Module.mk root/cint/reflex/Module.mk +--- root.as-needed/cint/reflex/Module.mk 2011-07-10 10:42:49.074890651 +0400 ++++ root/cint/reflex/Module.mk 2011-07-10 10:43:21.496672876 +0400 +@@ -48,9 +48,6 @@ + RFLX_GRFLXS := $(wildcard $(RFLX_GRFLXSD)/*.py) + RFLX_GRFLXPY := $(patsubst $(RFLX_GRFLXSD)/%.py,$(RFLX_GRFLXDD)/%.py,$(RFLX_GRFLXS)) + RFLX_GRFLXPY += $(RFLX_GCCXMLPATHPY) +-ifneq ($(BUILDPYTHON),no) +-RFLX_GRFLXPYC := $(subst .py,.pyc,$(RFLX_GRFLXPY)) +-endif + + RFLX_LIBDIR = $(LIBDIR) + +@@ -92,7 +89,7 @@ + + ALLEXECS += $(RFLX_GENMAPX) + +-POSTBIN += $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY) ++POSTBIN += $(RFLX_GRFLXPY) + + ##### local rules ##### + .PHONY: all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME) \ +@@ -122,8 +119,6 @@ + mkdir -p lib/python/genreflex; fi ) + cp $< $@ + +-$(RFLX_GRFLXDD)/%.pyc: $(RFLX_GRFLXDD)/%.py +- @python -c 'import py_compile; py_compile.compile( "$<" )' + + $(RFLX_GENMAPO) : CXXFLAGS += -I$(REFLEXDIRS)/genmap + +@@ -149,7 +144,7 @@ + $(RLIBMAP) -o $@ -l $(REFLEXDICTLIB) \ + -d $(REFLEXDICTLIBDEPM) -c $(REFLEXL) + +-all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY) ++all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPY) + + clean-genreflex: + @rm -rf lib/python/genreflex +diff -Naur root.as-needed/cint/reflex/python/CMakeLists.txt root/cint/reflex/python/CMakeLists.txt +--- root.as-needed/cint/reflex/python/CMakeLists.txt 2011-07-10 10:42:49.074890651 +0400 ++++ root/cint/reflex/python/CMakeLists.txt 2011-07-10 10:43:21.496672876 +0400 +@@ -15,7 +15,7 @@ + ##################### sources #################### + + FILE(GLOB_RECURSE GENREFLEX_SRCS RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} genreflex/*.py) +-SET(GENREFLEX_SCRIPT ${CMAKE_CURRENT_BINARY_DIR}/genreflex/genreflex.pyc PARENT_SCOPE) ++SET(GENREFLEX_SCRIPT PARENT_SCOPE) + + ##################### gccxmlpath #################### + diff --git a/sci-physics/root/files/root-5.34.13-unuran.patch b/sci-physics/root/files/root-5.34.13-unuran.patch new file mode 100644 index 000000000000..8262313184b5 --- /dev/null +++ b/sci-physics/root/files/root-5.34.13-unuran.patch @@ -0,0 +1,40 @@ +diff --git a/math/unuran/Module.mk b/math/unuran/Module.mk +index 00a530b..7cd22dc 100644 +--- a/math/unuran/Module.mk ++++ b/math/unuran/Module.mk +@@ -31,7 +31,7 @@ UNRS := $(wildcard $(UNRDIRS)/src/utils/*.c) \ + $(wildcard $(UNRDIRS)/src/uniform/*.c) \ + $(wildcard $(UNRDIRS)/src/urng/*.c) + else +-UNRTARCONTENT:=$(subst $(UNRVERS),$(UNRDIRS),$(shell mkdir -p $(UNRDIR); cd $(UNRDIR); gunzip -c $(UNRSRCS) | tar tf -)) ++UNRTARCONTENT:= + UNRS := $(filter %.c, \ + $(filter $(UNRDIRS)/src/utils/%,$(UNRTARCONTENT)) \ + $(filter $(UNRDIRS)/src/methods/%,$(UNRTARCONTENT)) \ +@@ -81,10 +81,9 @@ INCLUDEFILES += $(UNURANDEP) + ##### local rules ##### + .PHONY: all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME) + +-include/%.h: $(UNURANDIRI)/%.h $(UNURANETAG) ++include/%.h: $(UNURANDIRI)/%.h + cp $< $@ + +-$(UNURANDEP): $(UNRCFG) + $(UNRS): $(UNURANETAG) + + $(UNURANETAG): $(UNRSRCS) +@@ -137,12 +136,12 @@ $(UNRCFG): $(UNURANETAG) + GNUMAKE=$(MAKE) ./configure CC="$$ACC" \ + CFLAGS="$$ACFLAGS"); + +-$(UNURANLIB): $(UNRCFG) $(UNRO) $(UNURANO) $(UNURANDO) $(ORDER_) \ ++$(UNURANLIB): $(UNURANO) $(UNURANDO) $(ORDER_) \ + $(MAINLIBS) $(UNURANLIBDEP) + @$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \ + "$(SOFLAGS)" libUnuran.$(SOEXT) $@ \ + "$(UNURANO) $(UNURANDO)" \ +- "$(UNURANLIBEXTRA) $(UNRO)" ++ "$(UNURANLIBEXTRA) -lunuran" + + $(UNURANDS): $(UNRINIT) $(UNURANDH1) $(UNURANL) $(ROOTCINTTMPDEP) + $(MAKEDIR) diff --git a/sci-physics/root/files/root-5.34.26-ldflags.patch b/sci-physics/root/files/root-5.34.26-ldflags.patch new file mode 100644 index 000000000000..b81dbb5edb00 --- /dev/null +++ b/sci-physics/root/files/root-5.34.26-ldflags.patch @@ -0,0 +1,19 @@ +commit 3c8bc686abf57e7e2037c4c191cb63a1a5172b5b +Author: Andrew Savchenko <bircoph@gmail.com> +Date: Sun Feb 22 03:45:21 2015 +0300 + + root-5.32.00-prop-flags.patch -> root-5.34.26-prop-flags.patch + +diff --git a/config/Makefile.in b/config/Makefile.in +index 89674e7..91d25b9 100644 +--- a/config/Makefile.in ++++ b/config/Makefile.in +@@ -29,7 +29,7 @@ EXTRA_CFLAGS := -Iinclude @cflags@ + USERCONF_CFLAGS:= @usercflags@ + EXTRA_CXXFLAGS := -Iinclude @cflags@ + USERCONF_CXXFLAGS:= @usercxxflags@ +-EXTRA_LDFLAGS := @ldflags@ ++EXTRA_LDFLAGS := @ldflags@ $(LDFLAGS) + WERROR := @werror@ + WINRTDEBUG := @winrtdebug@ + diff --git a/sci-physics/root/files/root-6.00.01-dotfont.patch b/sci-physics/root/files/root-6.00.01-dotfont.patch new file mode 100644 index 000000000000..6c765f75a505 --- /dev/null +++ b/sci-physics/root/files/root-6.00.01-dotfont.patch @@ -0,0 +1,58 @@ +--- root/html/src/TClassDocOutput.cxx.orig 2012-06-08 02:13:51.000000000 +0400 ++++ root/html/src/TClassDocOutput.cxx 2012-06-08 02:34:45.705436577 +0400 +@@ -625,7 +625,7 @@ + << "size=\"8,10\";" << std::endl + << "ratio=auto;" << std::endl + << "margin=0;" << std::endl +- << "node [shape=plaintext,fontsize=40,width=4,height=0.75];" << std::endl ++ << "node [shape=plaintext,fontsize=40,width=4,height=0.75,fontname=\"DejaVu Serif\"];" << std::endl + << "\"" << fCurrentClass->GetName() << "\" [shape=ellipse];" << std::endl; + + std::stringstream ssDep; +@@ -704,7 +704,7 @@ + outdot << ";" << std::endl; + } else if (writeAndMoreFor) { + outdot << " \"...andmore" << writeAndMoreFor->GetName() +- << "\" [label=\"...and more\",fontname=\"Times-Italic\",fillcolor=lightgrey,style=filled];" << std::endl; ++ << "\" [label=\"...and more\",fontname=\"DejaVu Serif Italic\",fillcolor=lightgrey,style=filled];" << std::endl; + } + } + if (!levelExists) break; +@@ -733,7 +733,7 @@ + << "ranksep=0.1;" << std::endl + << "nodesep=0;" << std::endl + << "margin=0;" << std::endl; +- outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10];" << std::endl; ++ outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10,fontname=\"DejaVu Serif\"];" << std::endl; + + std::stringstream ssDep; + const int numColumns = 3; +@@ -939,7 +939,7 @@ + << "ranksep=0;" << std::endl + << "nodesep=0;" << std::endl + << "size=\"8,10\";" << std::endl +- << "node [fontsize=20,shape=plaintext];" << std::endl; ++ << "node [fontsize=20,shape=plaintext,fontname=\"DejaVu Serif\"];" << std::endl; + + for (std::list<std::string>::iterator iFile = listFilesToParse.begin(); + iFile != listFilesToParse.end(); ++iFile) { +@@ -999,7 +999,8 @@ + << "ranksep=0.7;" << std::endl + << "nodesep=0.3;" << std::endl + << "size=\"8,8\";" << std::endl +- << "ratio=compress;" << std::endl; ++ << "ratio=compress;" << std::endl ++ << "node [fontname=\"DejaVu Serif\"];" << std::endl; + + TString libs(fCurrentClass->GetSharedLibs()); + outdot << "\"All Libraries\" [URL=\"LibraryDependencies.html\",shape=box,rank=max,fillcolor=lightgray,style=filled];" << std::endl; +@@ -1109,7 +1110,8 @@ + + dotout << "digraph G {" << std::endl + << "ratio=auto;" << std::endl +- << "rankdir=RL;" << std::endl; ++ << "rankdir=RL;" << std::endl ++ << "node [fontname=\"DejaVu Serif\"];" << std::endl; + + // loop on all classes + TClassDocInfo* cdi = 0; diff --git a/sci-physics/root/files/root-6.00.01-llvm.patch b/sci-physics/root/files/root-6.00.01-llvm.patch new file mode 100644 index 000000000000..c6abb353ee64 --- /dev/null +++ b/sci-physics/root/files/root-6.00.01-llvm.patch @@ -0,0 +1,13 @@ +diff --git a/interpreter/llvm/src/Makefile.config.in b/interpreter/llvm/src/Makefile.config.in +index 7633be2..c8756b1 100644 +--- a/interpreter/llvm/src/Makefile.config.in ++++ b/interpreter/llvm/src/Makefile.config.in +@@ -170,6 +170,8 @@ CXXFLAGS += @CXXFLAGS@ + + # Linker flags. + LDFLAGS += @LDFLAGS@ ++NOUNDEF := -Wl,--no-undefined ++LDFLAGS := $(filter-out $(NOUNDEF),$(LDFLAGS)) + + # Path to the library archiver program. + AR_PATH = @AR@ diff --git a/sci-physics/root/files/root-6.00.01-nobyte-compile.patch b/sci-physics/root/files/root-6.00.01-nobyte-compile.patch new file mode 100644 index 000000000000..aa58f20686dc --- /dev/null +++ b/sci-physics/root/files/root-6.00.01-nobyte-compile.patch @@ -0,0 +1,33 @@ +diff -Naur root.as-needed/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk +--- root.as-needed/bindings/pyroot/Module.mk 2011-07-10 10:42:48.991561304 +0400 ++++ root/bindings/pyroot/Module.mk 2011-07-10 10:43:21.493339703 +0400 +@@ -48,8 +48,6 @@ + ROOTPY := $(subst $(MODDIR),$(LPATH),$(ROOTPYS)) + $(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@ + endif +-ROOTPYC := $(ROOTPY:.py=.pyc) +-ROOTPYO := $(ROOTPY:.py=.pyo) + + # used in the main Makefile + ALLHDRS += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH)) +@@ -68,10 +66,8 @@ + include/%.h: $(PYROOTDIRI)/%.h + cp $< $@ + +-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )' +-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )' + +-$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \ ++$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) \ + $(ROOTLIBSDEP) $(PYTHONLIBDEP) + @$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \ + "$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \ +@@ -113,7 +109,7 @@ + + distclean-$(MODNAME): clean-$(MODNAME) + @rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \ +- $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \ ++ $(ROOTPY) $(PYROOTMAP) \ + $(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64) + + distclean:: distclean-$(MODNAME) diff --git a/sci-physics/root/files/root-6.02.05-xrootd4.patch b/sci-physics/root/files/root-6.02.05-xrootd4.patch new file mode 100644 index 000000000000..0b4a4bef0f2e --- /dev/null +++ b/sci-physics/root/files/root-6.02.05-xrootd4.patch @@ -0,0 +1,11 @@ +https://sft.its.cern.ch/jira/browse/ROOT-6998 +--- root-6.02.05/net/netxng/src/TNetXNGFile.cxx.orig 2015-02-09 11:59:47.000000000 +0300 ++++ root-6.02.05/net/netxng/src/TNetXNGFile.cxx 2015-04-05 11:32:31.893127758 +0300 +@@ -28,6 +28,7 @@ + #include <XrdCl/XrdClFile.hh> + #include <XrdCl/XrdClXRootDResponses.hh> + #include <XrdCl/XrdClDefaultEnv.hh> ++#include <XrdVersion.hh> + #include <iostream> + + //------------------------------------------------------------------------------ diff --git a/sci-physics/root/files/root-6.04.06-gsl2.patch b/sci-physics/root/files/root-6.04.06-gsl2.patch new file mode 100644 index 000000000000..5d9fb102b73c --- /dev/null +++ b/sci-physics/root/files/root-6.04.06-gsl2.patch @@ -0,0 +1,58 @@ +commit ee9964210c56e7c1868618a4434c5340fef38fe4 +Author: Pere Mato <pere.mato@cern.ch> +Date: Tue Dec 15 11:58:24 2015 +0100 + + Fix for ROOT-7776 - Integrate GSL 2.0 in ROOT. Changed the version used when option builtin_gsl=ON to 2.1 (latest production). + +diff --git a/cmake/modules/SearchInstalledSoftware.cmake b/cmake/modules/SearchInstalledSoftware.cmake +index 6f04dad..309a8de 100644 +--- a/cmake/modules/SearchInstalledSoftware.cmake ++++ b/cmake/modules/SearchInstalledSoftware.cmake +@@ -332,7 +332,7 @@ if(mathmore OR builtin_gsl) + endif() + endif() + else() +- set(gsl_version 1.15) ++ set(gsl_version 2.1) + message(STATUS "Downloading and building GSL version ${gsl_version}") + ExternalProject_Add( + GSL +diff --git a/math/mathmore/src/GSLMultiFit.h b/math/mathmore/src/GSLMultiFit.h +index 1d86da5..5b5a887 100644 +--- a/math/mathmore/src/GSLMultiFit.h ++++ b/math/mathmore/src/GSLMultiFit.h +@@ -31,6 +31,7 @@ + #include "gsl/gsl_matrix.h" + #include "gsl/gsl_multifit_nlin.h" + #include "gsl/gsl_blas.h" ++#include "gsl/gsl_version.h" + #include "GSLMultiFitFunctionWrapper.h" + + #include "Math/IFunction.h" +@@ -143,7 +144,11 @@ public: + /// gradient value at the minimum + const double * Gradient() const { + if (fSolver == 0) return 0; ++#if GSL_MAJOR_VERSION > 1 ++ fType->gradient(fSolver->state, fVec); ++#else + gsl_multifit_gradient(fSolver->J, fSolver->f,fVec); ++#endif + return fVec->data; + } + +@@ -154,7 +159,14 @@ public: + unsigned int npar = fSolver->fdf->p; + fCov = gsl_matrix_alloc( npar, npar ); + static double kEpsrel = 0.0001; ++#if GSL_MAJOR_VERSION > 1 ++ gsl_matrix* J = gsl_matrix_alloc(npar,npar); ++ gsl_multifit_fdfsolver_jac (fSolver, J); ++ int ret = gsl_multifit_covar(J, kEpsrel, fCov); ++ gsl_matrix_free(J); ++#else + int ret = gsl_multifit_covar(fSolver->J, kEpsrel, fCov); ++#endif + if (ret != GSL_SUCCESS) return 0; + return fCov->data; + } diff --git a/sci-physics/root/files/root-6.04.06-prop-flags.patch b/sci-physics/root/files/root-6.04.06-prop-flags.patch new file mode 100644 index 000000000000..90db15e21f6d --- /dev/null +++ b/sci-physics/root/files/root-6.04.06-prop-flags.patch @@ -0,0 +1,22 @@ + config/Makefile.in | 6 +++--- + 1 file changed, 3 insertions(+), 3 deletions(-) + +diff --git a/config/Makefile.in b/config/Makefile.in +index 9243c90..a23a4d2 100644 +--- a/config/Makefile.in ++++ b/config/Makefile.in +@@ -64,11 +64,11 @@ HOST := @host@ + USECONFIG := @useconfig@ + MKLIBOPTIONS := @mkliboption@ + +-EXTRA_CFLAGS := -Iinclude @cflags@ ++EXTRA_CFLAGS := -Iinclude @cflags@ $(CFLAGS) + USERCONF_CFLAGS:= @usercflags@ +-EXTRA_CXXFLAGS := -Iinclude @cflags@ ++EXTRA_CXXFLAGS := -Iinclude @cflags@ $(CXXFLAGS) + USERCONF_CXXFLAGS:= @usercxxflags@ +-EXTRA_LDFLAGS := @ldflags@ ++EXTRA_LDFLAGS := @ldflags@ $(LDFLAGS) + WERROR := @werror@ + WINRTDEBUG := @winrtdebug@ + CTORSINITARRAY := @ctorsinitarray@ diff --git a/sci-physics/root/files/rootd.confd b/sci-physics/root/files/rootd.confd new file mode 100644 index 000000000000..7516b8c9b6dd --- /dev/null +++ b/sci-physics/root/files/rootd.confd @@ -0,0 +1,8 @@ +# conf.d file for root daemon + +# User to run as (default is `rootd') +ROOTD_USER="rootd" + +# Please refer to the rootd(1) man(1) page for more information on +# command line parameters. +ROOTD_OPTS="" diff --git a/sci-physics/root/files/rootd.initd b/sci-physics/root/files/rootd.initd new file mode 100644 index 000000000000..f808259c3670 --- /dev/null +++ b/sci-physics/root/files/rootd.initd @@ -0,0 +1,27 @@ +#!/sbin/openrc-run +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +depend() { + need net + use logger + provide root-file-server +} + +start() { + ebegin "Starting ROOT file server" + pid=$(start-stop-daemon --start --quiet --user ${ROOTD_USER} \ + --pidfile /var/run/rootd.pid \ + --exec /usr/bin/rootd -- ${ROOTD_OPTS}) + retval=$? + echo ${ROOTD_PID} > /var/run/rootd.pid + eend ${retval} +} + +stop() { + ebegin "Stopping ROOT file server" + start-stop-daemon --stop --quiet \ + --pidfile /var/run/rootd.pid \ + --exec /usr/bin/rootd + eend $? +} diff --git a/sci-physics/root/metadata.xml b/sci-physics/root/metadata.xml new file mode 100644 index 000000000000..fc9965963e8c --- /dev/null +++ b/sci-physics/root/metadata.xml @@ -0,0 +1,37 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>bircoph@gentoo.org</email> + <name>Andrew Savchenko</name> + </maintainer> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + ROOT Object Oriented Technologies is an object oriented data + analysis framework written in C++ by the CERN. Widely used in + high energy physics, but also in other data analysis applications. It + contains the CINT C/C++ interpreter and many classes such as + statistics, serialization, optimization, linear algebra, graphics, + GUI toolkit, and a complete visualization framework. +</longdescription> + <use> + <flag name="c++11"> Build ROOT using the C++11 standard</flag> + <flag name="c++14"> Build ROOT using the C++14 standard</flag> + <flag name="fits">Support for images and data from FITS files with <pkg>sci-libs/cfitsio</pkg></flag> + <flag name="gdml">Enable GDML writer and reader</flag> + <flag name="geocad">Enable ROOT-CAD interface using <pkg>sci-libs/opencascade</pkg></flag> + <flag name="http">Enable http server support including but not limited to fastcgi support</flag> + <flag name="math">Build all math related libraries plugins, needs <pkg>sci-libs/gsl</pkg> </flag> + <flag name="memstat">Build memory statistics library, helps to detect memory leaks</flag> + <flag name="pythia6">Build the interface for <pkg>sci-physics/pythia</pkg> version 6.x </flag> + <flag name="pythia8">Build the interface for <pkg>sci-physics/pythia</pkg> version 8.x </flag> + <flag name="reflex">Build the reflection database for the C++ interpreter</flag> + <flag name="shadow">Enable shadow authentication in rootd and proofd</flag> + <flag name="table">Build libTable contrib library</flag> + <flag name="xrootd">Build the interface for <pkg>net-libs/xrootd</pkg> </flag> + <flag name="R">Enable support for <pkg>dev-lang/R</pkg></flag> + </use> +</pkgmetadata> diff --git a/sci-physics/root/root-5.34.36.ebuild b/sci-physics/root/root-5.34.36.ebuild new file mode 100644 index 000000000000..86b4a8feaaa8 --- /dev/null +++ b/sci-physics/root/root-5.34.36.ebuild @@ -0,0 +1,441 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +if [[ ${PV} == "9999" ]] ; then + inherit git-r3 + EGIT_REPO_URI="http://root.cern.ch/git/root.git" +else + SRC_URI="https://root.cern.ch/download/${PN}_v${PV}.source.tar.gz" + KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +fi + +PYTHON_COMPAT=( python2_7 ) + +inherit elisp-common eutils fdo-mime fortran-2 multilib python-single-r1 \ + toolchain-funcs user versionator prefix + +DESCRIPTION="C++ data analysis framework and interpreter from CERN" +HOMEPAGE="https://root.cern.ch" + +SLOT="0/$(get_version_component_range 1-3 ${PV})" +LICENSE="LGPL-2.1 freedist MSttfEULA LGPL-3 libpng UoI-NCSA" +IUSE="+X afs c++11 c++14 doc emacs examples fits fftw gdml + graphviz http kerberos ldap +math +memstat mpi mysql odbc + +opengl openmp oracle postgres prefix pythia6 pythia8 + python qt4 +reflex ruby shadow sqlite ssl table +tiff xinetd + xml xrootd zeroconf" + +# TODO: add support for: davix +# TODO: unbundle: vdt + +REQUIRED_USE=" + !X? ( !opengl !qt4 !tiff ) + mpi? ( math !openmp ) + openmp? ( math !mpi ) + python? ( ${PYTHON_REQUIRED_USE} ) +" + +CDEPEND=" + app-arch/xz-utils:0= + >=dev-lang/cfortran-4.4-r2 + dev-libs/libpcre:3= + media-fonts/dejavu + media-libs/freetype:2= + media-libs/libpng:0= + sys-libs/zlib:0= + X? ( + media-libs/ftgl:0= + media-libs/glew:0= + x11-libs/libX11:0= + x11-libs/libXext:0= + x11-libs/libXpm:0= + || ( + media-libs/libafterimage[gif,jpeg,png,tiff?] + >=x11-wm/afterstep-2.2.11[gif,jpeg,png,tiff?] + ) + opengl? ( virtual/opengl virtual/glu x11-libs/gl2ps:0= ) + qt4? ( + dev-qt/qtgui:4= + dev-qt/qtopengl:4= + dev-qt/qt3support:4= + dev-qt/qtsvg:4= + dev-qt/qtwebkit:4= + dev-qt/qtxmlpatterns:4= + ) + x11-libs/libXft:0= + ) + afs? ( net-fs/openafs ) + emacs? ( virtual/emacs ) + fits? ( sci-libs/cfitsio:0= ) + fftw? ( sci-libs/fftw:3.0= ) + graphviz? ( media-gfx/graphviz:0= ) + http? ( dev-libs/fcgi:0= ) + kerberos? ( virtual/krb5 ) + ldap? ( net-nds/openldap:0= ) + math? ( + sci-libs/gsl:0= + sci-mathematics/unuran:0= + mpi? ( virtual/mpi ) + ) + mysql? ( virtual/mysql ) + odbc? ( || ( dev-db/libiodbc dev-db/unixODBC ) ) + oracle? ( dev-db/oracle-instantclient-basic:0= ) + postgres? ( dev-db/postgresql:= ) + pythia6? ( sci-physics/pythia:6= ) + pythia8? ( >=sci-physics/pythia-8.1.80:8= <sci-physics/pythia-8.2.0:8= ) + python? ( ${PYTHON_DEPS} ) + ruby? ( + dev-lang/ruby:= + dev-ruby/rubygems:= + ) + shadow? ( virtual/shadow ) + sqlite? ( dev-db/sqlite:3= ) + ssl? ( dev-libs/openssl:0= ) + xml? ( dev-libs/libxml2:2= ) + xrootd? ( >=net-libs/xrootd-3.3.5:0= ) + zeroconf? ( net-dns/avahi:0= ) +" + +DEPEND="${CDEPEND} + virtual/pkgconfig" + +RDEPEND="${CDEPEND} + reflex? ( dev-cpp/gccxml ) + xinetd? ( sys-apps/xinetd )" + +PDEPEND="doc? ( ~app-doc/root-docs-${PV}[http=,math=] )" + +S="${WORKDIR}/${PN}" + +# install stuff in ${P} and not ${PF} for easier tracking in root-docs +DOC_DIR="/usr/share/doc/${P}" + +die_compiler() { + eerror "You are using a $(tc-getCXX)-$5 without C++$1 capabilities" + die "Need one of the following C++$1 capable compilers:\n"\ + " >=sys-devel/gcc[cxx]-$2\n"\ + " >=sys-devel/clang-$3\n"\ + " >=dev-lang/icc-$4" +} + +# check compiler to satisfy minimal versions +# $1 - std version +# $2 - g++ +# $3 - clang++ +# $4 - icc/icpc +check_compiler() { + local cur ver + case "$(tc-getCXX)" in + *clang++*) + ver="$(best_version sys-devel/clang | sed 's:sys-devel/clang-::')" + cur="$3" + ;; + *g++*) + ver="$(gcc-version)" + cur="$2" + ;; + *icc*|*icpc*) + ver="$(best_version dev-lang/icc | sed 's:dev-lang/icc-::')" + cur="$4" + ;; + *) + ewarn "You are using an unsupported compiler." + ewarn "Please report any issues upstream." + return 0 + ;; + esac + version_is_at_least "${cur}" "${ver}" || die_compiler "$1" "$2" "$3" "$4" "${ver}" +} + +pkg_setup() { + fortran-2_pkg_setup + use python && python-single-r1_pkg_setup + echo + elog "There are extra options on packages not yet in Gentoo:" + elog "Afdsmgrd, AliEn, castor, Chirp, dCache, gfal, Globus, gLite," + elog "HDFS, Monalisa, MaxDB/SapDB, SRP." + elog "You can use the env variable EXTRA_ECONF variable for this." + elog "For example, for SRP, you would set: " + elog "EXTRA_ECONF=\"--enable-srp --with-srp-libdir=${EROOT%/}/usr/$(get_libdir)\"" + echo + + enewgroup rootd + enewuser rootd -1 -1 /var/spool/rootd rootd + + if use math; then + if use openmp; then + if [[ "$(tc-getCXX)" == *g++* && "$(tc-getCXX)" != *clang++* ]] && ! tc-has-openmp; then + ewarn "You are using a g++ without OpenMP capabilities" + die "Need an OpenMP capable compiler" + else + export USE_OPENMP=1 USE_PARALLEL_MINUIT2=1 + fi + elif use mpi; then + export USE_MPI=1 USE_PARALLEL_MINUIT2=1 + fi + fi + + use c++11 && check_compiler "11" "4.8" "3.3" "13" + use c++14 && check_compiler "14" "4.9" "3.4" "15" +} + +src_prepare() { + epatch \ + "${FILESDIR}"/${PN}-5.28.00b-glibc212.patch \ + "${FILESDIR}"/${PN}-5.32.00-cfitsio.patch \ + "${FILESDIR}"/${PN}-5.32.00-chklib64.patch \ + "${FILESDIR}"/${PN}-5.32.00-dotfont.patch \ + "${FILESDIR}"/${PN}-5.34.05-nobyte-compile.patch \ + "${FILESDIR}"/${PN}-5.34.13-unuran.patch \ + "${FILESDIR}"/${PN}-5.34.26-ldflags.patch + + # make sure we use system libs and headers + rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die + rm -r graf2d/asimage/src/libAfterImage || die + rm -r graf3d/ftgl/{inc,src} || die + rm -r graf2d/freetype/src || die + rm -r graf3d/glew/{inc,src} || die + rm -r core/pcre/src || die + rm -r math/unuran/src/unuran-*.tar.gz || die + LANG=C LC_ALL=C find core/zip -type f -name "[a-z]*" -print0 | \ + xargs -0 rm || die + rm -r core/lzma/src/*.tar.gz || die + rm graf3d/gl/{inc,src}/gl2ps.* || die + sed -i -e 's/^GLLIBS *:= .* $(OPENGLLIB)/& -lgl2ps/' \ + graf3d/gl/Module.mk || die + + # In Gentoo, libPythia6 is called libpythia6 + # iodbc is in /usr/include/iodbc + # pg_config.h is checked instead of libpq-fe.h + sed -i \ + -e 's:libPythia6:libpythia6:g' \ + -e 's:$ODBCINCDIR:$ODBCINCDIR /usr/include/iodbc:' \ + -e 's:libpq-fe.h:pg_config.h:' \ + configure || die "adjusting configure for Gentoo failed" + + hprefixify configure + hprefixify -e "s,I/usr/include,I${EPREFIX}/usr/include," config/Makefile.in + + # CSS should use local images + sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed" + + # fix reflex path (bug #497280) + sed -i -e 's|${ROOTSYS}/lib|@libdir@|' config/genreflex.in || die + + # QTDIR only used for qt3 in gentoo, and configure looks for it. + unset QTDIR +} + +src_configure() { + local -a myconf + # Some compilers need special care + case "$(tc-getCXX)" in + *clang++*) + myconf=( + --with-clang + --with-f77="$(tc-getFC)" + ) + ;; + *icc*|*icpc*) + # For icc we need to provide architecture manually + # and not to tamper with tc-get* + use x86 && myconf=( linuxicc ) + use amd64 && myconf=( linuxx8664icc ) + ;; + *) # gcc goes here too + myconf=( + --with-cc="$(tc-getCC)" + --with-cxx="$(tc-getCXX)" + --with-f77="$(tc-getFC)" + --with-ld="$(tc-getCXX)" + ) + ;; + esac + + # the configure script is not the standard autotools + myconf+=( + --prefix="${EPREFIX}/usr" + --etcdir="${EPREFIX}/etc/root" + --libdir="${EPREFIX}/usr/$(get_libdir)/${PN}" + --docdir="${EPREFIX}${DOC_DIR}" + --tutdir="${EPREFIX}${DOC_DIR}/examples/tutorials" + --testdir="${EPREFIX}${DOC_DIR}/examples/tests" + --cflags='${CFLAGS}' + --cxxflags='${CXXFLAGS}' + --disable-builtin-afterimage + --disable-builtin-ftgl + --disable-builtin-freetype + --disable-builtin-glew + --disable-builtin-lzma + --disable-builtin-pcre + --disable-builtin-zlib + --disable-cling + --disable-werror + --enable-explicitlink + --enable-shared + --enable-soversion + --fail-on-missing + --nohowto + --with-afs-shared=yes + --with-sys-iconpath="${EPREFIX}/usr/share/pixmaps" + $(use_enable X x11) + $(use_enable X asimage) + $(use_enable X xft) + $(use_enable afs) + $(use_enable c++11 cxx11) + $(use_enable c++14 cxx14) + $(use_enable fits fitsio) + $(use_enable fftw fftw3) + $(use_enable gdml) + $(use_enable graphviz gviz) + $(use_enable http) + $(use_enable kerberos krb5) + $(use_enable ldap) + $(use_enable math genvector) + $(use_enable math gsl-shared) + $(use_enable math mathmore) + $(use_enable math minuit2) + $(use_enable math roofit) + $(use_enable math tmva) + $(use_enable math vc) + $(use_enable math vdt) + $(use_enable math unuran) + $(use_enable memstat) + $(use_enable mysql) + $(usex mysql "--with-mysql-incdir=${EPREFIX}/usr/include/mysql" "") + $(use_enable odbc) + $(use_enable opengl) + $(use_enable oracle) + $(use_enable postgres pgsql) + $(use_enable prefix rpath) + $(use_enable pythia6) + $(use_enable pythia8) + $(use_enable python) + $(use_enable qt4 qt) + $(use_enable qt4 qtgsi) + $(use_enable reflex cintex) + $(use_enable reflex) + $(use_enable ruby) + $(use_enable shadow shadowpw) + $(use_enable sqlite) + $(use_enable ssl) + $(use_enable table) + $(use_enable tiff astiff) + $(use_enable xml) + $(use_enable xrootd) + $(use_enable zeroconf bonjour) + ${EXTRA_ECONF} + ) + + # usex can't be used here, because pg_config may be not + # installed with USE="-postgres" + use postgres && myconf+=( --with-pgsql-incdir=$(pg_config --includedir) ) + + ./configure ${myconf[@]} || die "configure failed" +} + +src_compile() { + # The build system does not handle the dependency of bin/rmkdepend correctly, + # preventing it to be called in parallel. Build bin/rmkdepend explicitly + # first to circumvent the problem. + emake bin/rmkdepend + emake \ + OPT="${CXXFLAGS}" \ + F77OPT="${FFLAGS}" \ + ROOTSYS="${S}" \ + LD_LIBRARY_PATH="${S}/lib" + use emacs && elisp-compile build/misc/*.el +} + +daemon_install() { + local daemons="rootd proofd" + dodir /var/spool/rootd + fowners rootd:rootd /var/spool/rootd + dodir /var/spool/rootd/{pub,tmp} + fperms 1777 /var/spool/rootd/{pub,tmp} + + local i + for i in ${daemons}; do + newinitd "${FILESDIR}"/${i}.initd ${i} + newconfd "${FILESDIR}"/${i}.confd ${i} + done + if use xinetd; then + insinto /etc/xinetd + doins "${S}"/etc/daemons/{rootd,proofd}.xinetd + fi +} + +desktop_install() { + cd "${S}" + echo "Icon=root-system-bin" >> etc/root.desktop + domenu etc/root.desktop + doicon build/package/debian/root-system-bin.png + + insinto /usr/share/icons/hicolor/48x48/mimetypes + doins build/package/debian/application-x-root.png + + insinto /usr/share/icons/hicolor/48x48/apps + doicon build/package/debian/root-system-bin.xpm +} + +cleanup_install() { + # Cleanup of files either already distributed or unused on Gentoo + pushd "${ED}" > /dev/null + rm usr/share/root/fonts/LICENSE || die + rm etc/root/proof/*.sample || die + rm -r etc/root/daemons || die + # these should be in PATH + mv etc/root/proof/utils/pq2/pq2* usr/bin/ || die + rm ${DOC_DIR#/}/{INSTALL,LICENSE,COPYING.CINT} || die + use examples || rm -r ${DOC_DIR#/}/examples || die + cd usr/$(get_libdir)/root/cint/cint + rm lib/posix/mktypes lib/dll_stl/setup lib/G__* || die + rm lib/dll_stl/G__* lib/dll_stl/rootcint_* lib/posix/exten.o || die + rm include/makehpib || die + popd > /dev/null +} + +src_install() { + emake DESTDIR="${D}" install + + echo "LDPATH=${EPREFIX%/}/usr/$(get_libdir)/root" > 99root + + use pythia8 && echo "PYTHIA8=${EPREFIX%/}/usr" >> 99root + if use python; then + echo "PYTHONPATH=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root + python_optimize "${D}/usr/$(get_libdir)/root" + use reflex && python_optimize "${D}/usr/$(get_libdir)/root/python/genreflex/" + fi + use ruby && \ + echo "RUBYLIB=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root + use emacs && elisp-install ${PN} build/misc/*.{el,elc} + if use examples; then + # these should really be taken care of by the root make install + insinto ${DOC_DIR}/examples/tutorials/tmva + doins -r tmva/test + fi + doenvd 99root + + # The build system installs Emacs support unconditionally in the wrong + # directory. Remove it and call elisp-install in case of USE=emacs. + rm -r "${ED}"/usr/share/emacs || die + + daemon_install + desktop_install + cleanup_install + + # do not copress files used by ROOT's CLI (.credit, .demo, .license) + docompress -x "${DOC_DIR}"/{CREDITS,examples/tutorials} + # needed for .license command to work + dosym "${ED}"usr/portage/licenses/LGPL-2.1 "${DOC_DIR}/LICENSE" +} + +pkg_postinst() { + fdo-mime_desktop_database_update +} + +pkg_postrm() { + fdo-mime_desktop_database_update +} diff --git a/sci-physics/root/root-6.04.06.ebuild b/sci-physics/root/root-6.04.06.ebuild new file mode 100644 index 000000000000..826af7a7fffb --- /dev/null +++ b/sci-physics/root/root-6.04.06.ebuild @@ -0,0 +1,498 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit elisp-common eutils fdo-mime fortran-2 multilib python-single-r1 \ + toolchain-funcs user versionator + +DESCRIPTION="C++ data analysis framework and interpreter from CERN" +HOMEPAGE="https://root.cern.ch" +SRC_URI="https://root.cern.ch/download/${PN}_v${PV}.source.tar.gz" + +SLOT="0/$(get_version_component_range 1-3 ${PV})" +LICENSE="LGPL-2.1 freedist MSttfEULA LGPL-3 libpng UoI-NCSA" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+X afs doc emacs examples fits fftw gdml geocad + graphviz http kerberos ldap +math +memstat mpi mysql odbc + +opengl openmp oracle postgres prefix pythia6 pythia8 + python qt4 R shadow sqlite ssl table +tiff xinetd xml xrootd + zeroconf" + +# TODO: add support for: davix +# TODO: ROOT-6 supports x32 ABI, but half of its dependencies doesn't +# TODO: unbundle: cling, vdt + +REQUIRED_USE=" + !X? ( !opengl !qt4 !tiff ) + mpi? ( math !openmp ) + openmp? ( math !mpi ) + python? ( ${PYTHON_REQUIRED_USE} ) +" + +CDEPEND=" + app-arch/xz-utils:0= + >=dev-lang/cfortran-4.4-r2 + dev-libs/libpcre:3= + media-fonts/dejavu + media-libs/freetype:2= + media-libs/libpng:0= + >=sys-devel/clang-3.4:= + sys-libs/ncurses:= + sys-libs/zlib:0= + X? ( + media-libs/ftgl:0= + media-libs/glew:0= + x11-libs/libX11:0= + x11-libs/libXext:0= + x11-libs/libXpm:0= + || ( + media-libs/libafterimage[gif,jpeg,png,tiff?] + >=x11-wm/afterstep-2.2.11[gif,jpeg,png,tiff?] + ) + opengl? ( virtual/opengl virtual/glu x11-libs/gl2ps:0= ) + qt4? ( + dev-qt/qtgui:4= + dev-qt/qtopengl:4= + dev-qt/qt3support:4= + dev-qt/qtsvg:4= + dev-qt/qtwebkit:4= + dev-qt/qtxmlpatterns:4= + ) + x11-libs/libXft:0= + ) + afs? ( net-fs/openafs ) + emacs? ( virtual/emacs ) + fits? ( sci-libs/cfitsio:0= ) + fftw? ( sci-libs/fftw:3.0= ) + geocad? ( <sci-libs/opencascade-6.8.0:= ) + graphviz? ( media-gfx/graphviz:0= ) + http? ( dev-libs/fcgi:0= ) + kerberos? ( virtual/krb5 ) + ldap? ( net-nds/openldap:0= ) + math? ( + sci-libs/gsl:0= + sci-mathematics/unuran:0= + mpi? ( virtual/mpi ) + ) + mysql? ( virtual/mysql ) + odbc? ( || ( dev-db/libiodbc dev-db/unixODBC ) ) + oracle? ( dev-db/oracle-instantclient-basic:0= ) + postgres? ( dev-db/postgresql:= ) + pythia6? ( sci-physics/pythia:6= ) + pythia8? ( >=sci-physics/pythia-8.1.80:8= ) + python? ( ${PYTHON_DEPS} ) + R? ( dev-lang/R ) + shadow? ( virtual/shadow ) + sqlite? ( dev-db/sqlite:3= ) + ssl? ( dev-libs/openssl:0= ) + xml? ( dev-libs/libxml2:2= ) + xrootd? ( >=net-libs/xrootd-3.3.5:0= ) + zeroconf? ( net-dns/avahi:0= ) +" + +# TODO: ruby is not yet ported to ROOT-6, reenable when (if?) ready +# ruby? ( +# dev-lang/ruby:= +# dev-ruby/rubygems:= +# ) + +DEPEND="${CDEPEND} + virtual/pkgconfig" + +RDEPEND="${CDEPEND} + xinetd? ( sys-apps/xinetd )" + +PDEPEND="doc? ( ~app-doc/root-docs-${PV}[http=,math=] )" + +# install stuff in ${P} and not ${PF} for easier tracking in root-docs +DOC_DIR="/usr/share/doc/${P}" + +OC_UNSUPPORTED="6.8.0" + +die_compiler() { + eerror "You are using a $(tc-getCXX)-$5 without C++$1 capabilities" + die "Need one of the following C++$1 capable compilers:\n"\ + " >=sys-devel/gcc[cxx]-$2\n"\ + " >=sys-devel/clang-$3\n"\ + " >=dev-lang/icc-$4" +} + +# check compiler to satisfy minimal versions +# $1 - std version +# $2 - g++ +# $3 - clang++ +# $4 - icc/icpc +check_compiler() { + local cur ver + case "$(tc-getCXX)" in + *clang++*) + ver="$(best_version sys-devel/clang | sed 's:sys-devel/clang-::')" + cur="$3" + ;; + *g++*) + ver="$(gcc-version)" + if version_is_at_least "5" "${ver}"; then + eerror "" + eerror "GCC-5 is not yet supported in ROOT-6." + eerror "The code may build for you, but will have run-time failures." + eerror "See the following bugs:" + eerror "https://sft.its.cern.ch/jira/browse/ROOT-7285" + eerror "https://sft.its.cern.ch/jira/browse/ROOT-7319" + eerror "https://sft.its.cern.ch/jira/browse/ROOT-7654" + eerror "https://sft.its.cern.ch/jira/browse/ROOT-7721" + eerror "https://sft.its.cern.ch/jira/browse/ROOT-7818" + eerror "https://sft.its.cern.ch/jira/browse/ROOT-7895" + eerror "https://bugs.gentoo.org/show_bug.cgi?id=564306" + eerror "" + eerror "Please use GCC-4.9 for now." + eerror "" + die "gcc-5 is not yet supported" + fi + cur="$2" + ;; + *icc*|*icpc*) + ver="$(best_version dev-lang/icc | sed 's:dev-lang/icc-::')" + eerror "ROOT-6 is known not to build with ICC." + eerror "Please report any isuses upstream." + cur="$4" + ;; + *) + ewarn "You are using an unsupported compiler." + ewarn "Please report any issues upstream." + return 0 + ;; + esac + version_is_at_least "${cur}" "${ver}" || die_compiler "$1" "$2" "$3" "$4" "${ver}" +} + +pkg_setup() { + fortran-2_pkg_setup + use python && python-single-r1_pkg_setup + echo + elog "There are extra options on packages not yet in Gentoo:" + elog "Afdsmgrd, AliEn, castor, Chirp, dCache, gfal, Globus, gLite," + elog "HDFS, Monalisa, MaxDB/SapDB, SRP." + elog "You can use the env variable EXTRA_ECONF variable for this." + elog "For example, for SRP, you would set: " + elog "EXTRA_ECONF=\"--enable-srp --with-srp-libdir=${EROOT%/}/usr/$(get_libdir)\"" + echo + + enewgroup rootd + enewuser rootd -1 -1 /var/spool/rootd rootd + + if use math; then + if use openmp; then + if [[ "$(tc-getCXX)" == *g++* && "$(tc-getCXX)" != *clang++* ]] && ! tc-has-openmp; then + ewarn "You are using a g++ without OpenMP capabilities" + die "Need an OpenMP capable compiler" + else + export USE_OPENMP=1 USE_PARALLEL_MINUIT2=1 + fi + elif use mpi; then + export USE_MPI=1 USE_PARALLEL_MINUIT2=1 + fi + fi + + # c++11 support is mandatory + check_compiler "11" "4.8" "3.4" "13" + + # Active version of opencascade may be >= $OC_UNSUPPORTED, + # so we need to eselect proper version (it must exist due to DEPEND requirement) + if use geocad; then + oc_current=$(eselect opencascade show) + # Proceed only if active version is unsupported + if version_is_at_least "${OC_UNSUPPORTED}" "${oc_current}"; then + local -a vlist + vlist=( $(version_sort $(eselect opencascade list | awk '/^ / { print $2 }')) ) + local i + # search for higehr version < $OC_UNSUPPORTED + # list is sorted acsending, so loop backwards + for (( i=$(( ${#vlist[@]} -1 )); i>=0; i-- )); do + version_is_at_least "${OC_UNSUPPORTED}" "${vlist[i]}" || break + done + [[ $i == "-1" ]] && die "No suitable opencascade eselect slot is available (<${OC_UNSUPPORTED})" + + einfo "Switching opencascade to supported slot: ${oc_current} -> ${vlist[i]}" + eselect opencascade set ${vlist[i]} > /dev/null || die "eselect opencascade set ${vlist[i]} failed!" + else + # forget it, effectively disabling eselect cleanup + unset oc_current + fi + fi +} + +src_prepare() { + # Second version of makepch is required in order to generate + # PCH file appropriate for Gentoo include headers layout. + # This can be done only at install stage, when files are placed + # as appropriate. Premature modification of makepch.sh will + # broke build process, however. + #cp "etc/dictpch/makepch.sh" "etc/dictpch/makepch-gentoo.sh" || die + + epatch \ + "${FILESDIR}"/${PN}-5.28.00b-glibc212.patch \ + "${FILESDIR}"/${PN}-5.32.00-afs.patch \ + "${FILESDIR}"/${PN}-5.32.00-cfitsio.patch \ + "${FILESDIR}"/${PN}-5.32.00-chklib64.patch \ + "${FILESDIR}"/${PN}-5.34.13-unuran.patch \ + "${FILESDIR}"/${PN}-6.00.01-dotfont.patch \ + "${FILESDIR}"/${PN}-6.00.01-llvm.patch \ + "${FILESDIR}"/${PN}-6.00.01-nobyte-compile.patch \ + "${FILESDIR}"/${PN}-6.04.06-prop-flags.patch \ + "${FILESDIR}"/${PN}-6.04.06-gsl2.patch + # "${FILESDIR}"/${PN}-6.02.05-xrootd4.patch + # "${FILESDIR}"/${PN}-6.02.05-dictpch.patch \ + + # make sure we use system libs and headers + rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die + rm -r graf2d/asimage/src/libAfterImage || die + rm -r graf3d/ftgl/{inc,src} || die + rm -r graf2d/freetype/src || die + rm -r graf3d/glew/{inc,src} || die + rm -r core/pcre/src || die + rm -r math/unuran/src/unuran-*.tar.gz || die + LANG=C LC_ALL=C find core/zip -type f -name "[a-z]*" -print0 | \ + xargs -0 rm || die + rm -r core/lzma/src/*.tar.gz || die + rm graf3d/gl/{inc,src}/gl2ps.* || die + sed -i -e 's/^GLLIBS *:= .* $(OPENGLLIB)/& -lgl2ps/' \ + graf3d/gl/Module.mk || die + + # In Gentoo, libPythia6 is called libpythia6 + # iodbc is in /usr/include/iodbc + # pg_config.h is checked instead of libpq-fe.h + sed -i \ + -e 's:libPythia6:libpythia6:g' \ + -e 's:$ODBCINCDIR:$ODBCINCDIR /usr/include/iodbc:' \ + -e 's:libpq-fe.h:pg_config.h:' \ + configure || die "adjusting configure for Gentoo failed" + + # prefixify the configure script + sed -i \ + -e 's:/usr:${EPREFIX}/usr:g' \ + configure || die "prefixify configure failed" + + # CSS should use local images + sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed" + + # QTDIR only used for qt3 in gentoo, and configure looks for it. + unset QTDIR +} + +# NB: ROOT uses bundled LLVM, because it is patched and API-incompatible with +# system LLVM. +# NB: As of 6.00.0.1 cmake is not ready as it can't fully replace configure, +# e.g. for afs and geocad. + +src_configure() { + local -a myconf + # Some compilers need special care + case "$(tc-getCXX)" in + *clang++*) + myconf=( + --with-clang + --with-f77="$(tc-getFC)" + ) + ;; + *icc*|*icpc*) + # For icc we need to provide architecture manually + # and not to tamper with tc-get* + use x86 && myconf=( linuxicc ) + use amd64 && myconf=( linuxx8664icc ) + ;; + *) # gcc goes here too + myconf=( + --with-cc="$(tc-getCC)" + --with-cxx="$(tc-getCXX)" + --with-f77="$(tc-getFC)" + --with-ld="$(tc-getCXX)" + ) + ;; + esac + + # the configure script is not the standard autotools + myconf+=( + --prefix="${EPREFIX}/usr" + --etcdir="${EPREFIX}/etc/root" + --libdir="${EPREFIX}/usr/$(get_libdir)/${PN}" + --docdir="${EPREFIX}${DOC_DIR}" + --tutdir="${EPREFIX}${DOC_DIR}/examples/tutorials" + --testdir="${EPREFIX}${DOC_DIR}/examples/tests" + --disable-builtin-afterimage + --disable-builtin-ftgl + --disable-builtin-freetype + --disable-builtin-glew + --disable-builtin-lzma + --disable-builtin-pcre + --disable-builtin-zlib + --disable-werror + --enable-explicitlink + --enable-shared + --enable-soversion + --fail-on-missing + --nohowto + --with-afs-shared=yes + --with-sys-iconpath="${EPREFIX}/usr/share/pixmaps" + # Invalid option '-mtune=native'. Try ./configure --help + # --cflags=\"${CFLAGS}\" + # --cxxflags=\"${CXXFLAGS}\" + $(use_enable X x11) + $(use_enable X asimage) + $(use_enable X xft) + $(use_enable afs) + $(use_enable fits fitsio) + $(use_enable fftw fftw3) + $(use_enable gdml) + $(use_enable geocad) + $(use_enable graphviz gviz) + $(use_enable http) + $(use_enable kerberos krb5) + $(use_enable ldap) + $(use_enable math genvector) + $(use_enable math gsl-shared) + $(use_enable math mathmore) + $(use_enable math minuit2) + $(use_enable math roofit) + $(use_enable math tmva) + $(use_enable math vc) + $(use_enable math vdt) + $(use_enable math unuran) + $(use_enable memstat) + $(use_enable mysql) + $(usex mysql "--with-mysql-incdir=${EPREFIX}/usr/include/mysql" "") + $(use_enable odbc) + $(use_enable opengl) + $(use_enable oracle) + $(use_enable postgres pgsql) + $(use_enable prefix rpath) + $(use_enable pythia6) + $(use_enable pythia8) + $(use_enable python) + $(use_enable qt4 qt) + $(use_enable qt4 qtgsi) + $(use_enable R r) + $(use_enable shadow shadowpw) + $(use_enable sqlite) + $(use_enable ssl) + $(use_enable table) + $(use_enable tiff astiff) + $(use_enable xml) + $(use_enable xrootd) + $(use_enable zeroconf bonjour) + ${EXTRA_ECONF} + ) + + # usex can't be used here, because pg_config may be not + # installed with USE="-postgres" + use postgres && myconf+=( --with-pgsql-incdir=$(pg_config --includedir) ) + + einfo "Configuring with ${myconf[@]}" + ./configure ${myconf[@]} || die "configure failed" +} + +src_compile() { + emake \ + OPT="${CXXFLAGS}" \ + F77OPT="${FFLAGS}" \ + ROOTSYS="${S}" \ + LD_LIBRARY_PATH="${S}/lib" + use emacs && elisp-compile build/misc/*.el +} + +daemon_install() { + local daemons="rootd proofd" + dodir /var/spool/rootd + fowners rootd:rootd /var/spool/rootd + dodir /var/spool/rootd/{pub,tmp} + fperms 1777 /var/spool/rootd/{pub,tmp} + + local i + for i in ${daemons}; do + newinitd "${FILESDIR}"/${i}.initd ${i} + newconfd "${FILESDIR}"/${i}.confd ${i} + done + if use xinetd; then + insinto /etc/xinetd + doins "${S}"/etc/daemons/{rootd,proofd}.xinetd + fi +} + +desktop_install() { + cd "${S}" + echo "Icon=root-system-bin" >> etc/root.desktop + domenu etc/root.desktop + doicon build/package/debian/root-system-bin.png + + insinto /usr/share/icons/hicolor/48x48/mimetypes + doins build/package/debian/application-x-root.png + + insinto /usr/share/icons/hicolor/48x48/apps + doicon build/package/debian/root-system-bin.xpm +} + +cleanup_install() { + # Cleanup of files either already distributed or unused on Gentoo + pushd "${ED}" > /dev/null + rm usr/share/root/fonts/LICENSE || die + rm etc/root/proof/*.sample || die + rm -r etc/root/daemons || die + # these should be in PATH + mv etc/root/proof/utils/pq2/pq2* usr/bin/ || die + rm ${DOC_DIR#/}/INSTALL || die + use examples || rm -r ${DOC_DIR#/}/examples || die + + # clean hardcoded sandbox paths + #rm etc/root/dictpch/allCppflags.txt.tmp || die + #sed -i "s|${S}/||" etc/root/cling/llvm/Config/llvm-config.h || die + # regenerate pch for Gentoo headers layout + #rm "etc/root/allDict.cxx.pch" || die + #sed -i 's|etc/dictpch|etc/root/dictpch|' etc/root/dictpch/allLinkDefs.h || die + #sed -i 's|etc/cling|etc/root/cling|' etc/root/dictpch/allHeaders.h || die + #sed -i "s|ROOTDIR_TEMPLATE|${ED}|" etc/root/dictpch/makepch-gentoo.sh || die + #etc/root/dictpch/makepch-gentoo.sh etc/root/allDict.cxx.pch || die "PCH generation failed" +} + +src_install() { + ROOTSYS="${S}" emake DESTDIR="${D}" install + insinto "${DOC_DIR}" + doins README.md + + echo "LDPATH=${EPREFIX%/}/usr/$(get_libdir)/root" > 99root + use pythia8 && echo "PYTHIA8=${EPREFIX%/}/usr" >> 99root + + if use python; then + echo "PYTHONPATH=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root + python_optimize "${D}/usr/$(get_libdir)/root" + fi + use emacs && elisp-install ${PN} build/misc/*.{el,elc} + doenvd 99root + + # The build system installs Emacs support unconditionally in the wrong + # directory. Remove it and call elisp-install in case of USE=emacs. + rm -r "${ED}"/usr/share/emacs || die + + daemon_install + desktop_install + cleanup_install + + # do not copress files used by ROOT's CLI (.credit, .demo, .license) + docompress -x "${DOC_DIR}"/{CREDITS,examples/tutorials} +} + +pkg_postinst() { + fdo-mime_desktop_database_update + + # restort opencascade eselect slot + if use geocad && [[ -n ${oc_current} ]]; then + einfo "Switching to user set slot: $(eselect opencascade show) -> ${oc_current}" + eselect opencascade set ${oc_current} > /dev/null || eerror "eselect opencascade set ${vlist[i]} failed!" + unset oc_current + fi +} + +pkg_postrm() { + fdo-mime_desktop_database_update +} diff --git a/sci-physics/sassena/Manifest b/sci-physics/sassena/Manifest new file mode 100644 index 000000000000..ec3561a37a0e --- /dev/null +++ b/sci-physics/sassena/Manifest @@ -0,0 +1,8 @@ +AUX sassena-1.4.2_cmake-remove-missing.patch 1044 SHA256 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4b6f9d365d20b4fbb7804f85d6c35e14e7efd634581123075e68e507faa9a18588a4ac7516a92d9a4e5bc6013d466bbf9f7aa6b9c1446d5916638e3761bdc314 diff --git a/sci-physics/sassena/files/sassena-1.4.2_cmake-remove-missing.patch b/sci-physics/sassena/files/sassena-1.4.2_cmake-remove-missing.patch new file mode 100644 index 000000000000..7131d3514526 --- /dev/null +++ b/sci-physics/sassena/files/sassena-1.4.2_cmake-remove-missing.patch @@ -0,0 +1,33 @@ +diff -ru sassena-1.4.2_org/cmake/CMakeLists.txt.executables sassena-1.4.2/cmake/CMakeLists.txt.executables +--- sassena-1.4.2_org/cmake/CMakeLists.txt.executables 2014-07-29 11:02:12.652053749 +0200 ++++ sassena-1.4.2/cmake/CMakeLists.txt.executables 2014-07-29 11:04:57.831042602 +0200 +@@ -18,18 +18,12 @@ + tests/unit_broadcast.cpp + ) + +-ADD_EXECUTABLE(unit_parameters +- src/common.cpp +- tests/unit_parameters.cpp +-) +- + + IF(STATIC) + SET_TARGET_PROPERTIES(sassena PROPERTIES LINK_SEARCH_END_STATIC 1) + SET_TARGET_PROPERTIES(s_stage PROPERTIES LINK_SEARCH_END_STATIC 1) + SET_TARGET_PROPERTIES(s_maketnx PROPERTIES LINK_SEARCH_END_STATIC 1) + SET_TARGET_PROPERTIES(unit_broadcast PROPERTIES LINK_SEARCH_END_STATIC 1) +-SET_TARGET_PROPERTIES(unit_parameters PROPERTIES LINK_SEARCH_END_STATIC 1) + ENDIF(STATIC) + + TARGET_LINK_LIBRARIES (s_stage +@@ -89,10 +83,4 @@ + ${BOOST_LIBRARIES} + ) + +-TARGET_LINK_LIBRARIES (unit_parameters +- sass_log +- sass_controlio +- ${BOOST_LIBRARIES} +-) +- + INSTALL(TARGETS unit_broadcast RUNTIME DESTINATION bin) diff --git a/sci-physics/sassena/files/sassena-1.4.2_link_boost_thread.patch b/sci-physics/sassena/files/sassena-1.4.2_link_boost_thread.patch new file mode 100644 index 000000000000..424ca381a511 --- /dev/null +++ b/sci-physics/sassena/files/sassena-1.4.2_link_boost_thread.patch @@ -0,0 +1,92 @@ +diff -ru sassena-1.4.2_org/src/main/sassena.cpp sassena-1.4.2/src/main/sassena.cpp +--- sassena-1.4.2_org/src/main/sassena.cpp 2014-07-29 11:02:12.650053749 +0200 ++++ sassena-1.4.2/src/main/sassena.cpp 2014-07-29 12:52:56.978605357 +0200 +@@ -62,6 +62,7 @@ + #include <boost/serialization/complex.hpp> + #include <boost/serialization/map.hpp> + #include <boost/serialization/vector.hpp> ++#include <boost/thread/thread.hpp> + + // other headers + #include "exceptions/exceptions.hpp" +Nur in sassena-1.4.2/src/main: .sassena.cpp.swp. +diff -ru sassena-1.4.2_org/src/main/s_stage.cpp sassena-1.4.2/src/main/s_stage.cpp +--- sassena-1.4.2_org/src/main/s_stage.cpp 2014-07-29 11:02:12.650053749 +0200 ++++ sassena-1.4.2/src/main/s_stage.cpp 2014-07-29 12:51:22.257611749 +0200 +@@ -33,6 +33,7 @@ + #include <boost/serialization/complex.hpp> + #include <boost/serialization/map.hpp> + #include <boost/serialization/vector.hpp> ++#include <boost/thread/thread.hpp> + + // other headers + #include "exceptions/exceptions.hpp" +diff -ru sassena-1.4.2_org/src/scatter_devices/abstract_scatter_device.cpp sassena-1.4.2/src/scatter_devices/abstract_scatter_device.cpp +--- sassena-1.4.2_org/src/scatter_devices/abstract_scatter_device.cpp 2014-07-29 11:02:12.650053749 +0200 ++++ sassena-1.4.2/src/scatter_devices/abstract_scatter_device.cpp 2014-07-29 13:02:20.824567306 +0200 +@@ -18,6 +18,7 @@ + #include <boost/accumulators/accumulators.hpp> + #include <boost/accumulators/statistics.hpp> + #include <boost/lexical_cast.hpp> ++#include <boost/thread/thread.hpp> + + // other headers + #include "exceptions/exceptions.hpp" +Nur in sassena-1.4.2/src/scatter_devices: .abstract_scatter_device.cpp.swp. +diff -ru sassena-1.4.2_org/src/scatter_devices/all_vectors_scatter_device.cpp sassena-1.4.2/src/scatter_devices/all_vectors_scatter_device.cpp +--- sassena-1.4.2_org/src/scatter_devices/all_vectors_scatter_device.cpp 2014-07-29 11:02:12.649053750 +0200 ++++ sassena-1.4.2/src/scatter_devices/all_vectors_scatter_device.cpp 2014-07-29 13:04:04.907560282 +0200 +@@ -18,6 +18,7 @@ + #include <boost/accumulators/accumulators.hpp> + #include <boost/accumulators/statistics.hpp> + #include <boost/lexical_cast.hpp> ++#include <boost/thread/thread.hpp> + + // other headers + #include "math/coor3d.hpp" +Nur in sassena-1.4.2/src/scatter_devices: .all_vectors_scatter_device.cpp.swp. +diff -ru sassena-1.4.2_org/src/scatter_devices/multipole_scatter_device.cpp sassena-1.4.2/src/scatter_devices/multipole_scatter_device.cpp +--- sassena-1.4.2_org/src/scatter_devices/multipole_scatter_device.cpp 2014-07-29 11:02:12.649053750 +0200 ++++ sassena-1.4.2/src/scatter_devices/multipole_scatter_device.cpp 2014-07-29 13:01:16.038571678 +0200 +@@ -19,6 +19,7 @@ + #include <boost/accumulators/statistics.hpp> + #include <boost/lexical_cast.hpp> + #include <boost/math/special_functions.hpp> ++#include <boost/thread/thread.hpp> + + // other headers + #include "math/coor3d.hpp" +diff -ru sassena-1.4.2_org/src/scatter_devices/self_vectors_scatter_device.cpp sassena-1.4.2/src/scatter_devices/self_vectors_scatter_device.cpp +--- sassena-1.4.2_org/src/scatter_devices/self_vectors_scatter_device.cpp 2014-07-29 11:02:12.650053749 +0200 ++++ sassena-1.4.2/src/scatter_devices/self_vectors_scatter_device.cpp 2014-07-29 13:01:45.753569673 +0200 +@@ -18,6 +18,7 @@ + #include <boost/accumulators/accumulators.hpp> + #include <boost/accumulators/statistics.hpp> + #include <boost/lexical_cast.hpp> ++#include <boost/thread/thread.hpp> + + // other headers + #include "math/coor3d.hpp" +diff -ru sassena-1.4.2_org/src/services/file_writer_service.cpp sassena-1.4.2/src/services/file_writer_service.cpp +--- sassena-1.4.2_org/src/services/file_writer_service.cpp 2014-07-29 11:02:12.650053749 +0200 ++++ sassena-1.4.2/src/services/file_writer_service.cpp 2014-07-29 13:08:07.448543914 +0200 +@@ -13,6 +13,7 @@ + + #include <boost/lexical_cast.hpp> + #include <boost/filesystem.hpp> ++#include <boost/thread/thread.hpp> + #include <log.hpp> + #include <control.hpp> + #include <math/smath.hpp> +Nur in sassena-1.4.2/src/services: .file_writer_service.cpp.swp. +diff -ru sassena-1.4.2_org/src/services/monitor_service.cpp sassena-1.4.2/src/services/monitor_service.cpp +--- sassena-1.4.2_org/src/services/monitor_service.cpp 2014-07-29 11:02:12.650053749 +0200 ++++ sassena-1.4.2/src/services/monitor_service.cpp 2014-07-29 13:07:06.617548019 +0200 +@@ -13,6 +13,7 @@ + #include <boost/lexical_cast.hpp> + #include <boost/filesystem.hpp> + #include <boost/random/uniform_int.hpp> ++#include <boost/thread/thread.hpp> + #include <log.hpp> + #include <control.hpp> + #include <report/timer.hpp> diff --git a/sci-physics/sassena/files/sassena-1.4.2_uint32_t.patch b/sci-physics/sassena/files/sassena-1.4.2_uint32_t.patch new file mode 100644 index 000000000000..ecb6e845a6b1 --- /dev/null +++ b/sci-physics/sassena/files/sassena-1.4.2_uint32_t.patch @@ -0,0 +1,11 @@ +diff -ru sassena-1.4.2_org/src/sample/frames.cpp sassena-1.4.2/src/sample/frames.cpp +--- sassena-1.4.2_org/src/sample/frames.cpp 2014-07-29 11:02:12.651053749 +0200 ++++ sassena-1.4.2/src/sample/frames.cpp 2014-07-29 11:11:39.229015514 +0200 +@@ -298,6 +298,7 @@ + dcdfile.seekg(marker,ios_base::cur); + dcdfile.read((char*) &marker,sizeof(int32_t)); + ++ using boost::uint32_t; + uint32_t noa; + dcdfile.read((char*) &marker,sizeof(int32_t)); + dcdfile.read((char*) &noa,sizeof(uint32_t)); diff --git a/sci-physics/sassena/metadata.xml b/sci-physics/sassena/metadata.xml new file mode 100644 index 000000000000..4fac2fa01530 --- /dev/null +++ b/sci-physics/sassena/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>alexxy@gentoo.org</email> + <name>Alexey Shvetsov</name> + </maintainer> + <upstream> + <remote-id type="github">benlabs/sassena</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-physics/sassena/sassena-1.4.2.ebuild b/sci-physics/sassena/sassena-1.4.2.ebuild new file mode 100644 index 000000000000..4546a6090317 --- /dev/null +++ b/sci-physics/sassena/sassena-1.4.2.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit cmake-utils + +DESCRIPTION="Software for Calculating Scattering Diagrams on Massively Parallel Computers" +HOMEPAGE="http://www.sassena.org" +SRC_URI="https://github.com/benlabs/sassena/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux" +IUSE="" + +DEPEND=" + dev-libs/boost[mpi] + sci-libs/hdf5[mpi] + dev-libs/libxml2 + sci-libs/fftw:3.0 + virtual/mpi + virtual/blas + virtual/lapack" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}/${P}_cmake-remove-missing.patch" + "${FILESDIR}/${P}_uint32_t.patch" + "${FILESDIR}/${P}_link_boost_thread.patch" +) diff --git a/sci-physics/siscone/Manifest b/sci-physics/siscone/Manifest new file mode 100644 index 000000000000..d9a0ed0d3ee3 --- /dev/null +++ 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000000000000..36aacf0ea76b --- /dev/null +++ b/sci-physics/siscone/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription lang="en"> + SISCone implements a seedless infrared (IR) safe cone jet algorithm, it takes + N^2*ln(N) time to find jets among N particles, comparing to N*2^N time of + other algorithms. +</longdescription> +</pkgmetadata> diff --git a/sci-physics/siscone/siscone-2.0.6.ebuild b/sci-physics/siscone/siscone-2.0.6.ebuild new file mode 100644 index 000000000000..c6e2acc0d5c7 --- /dev/null +++ b/sci-physics/siscone/siscone-2.0.6.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit autotools-utils + +DESCRIPTION="Hadron Seedless Infrared-Safe Cone jet algorithm" +HOMEPAGE="http://siscone.hepforge.org/" +SRC_URI="http://www.hepforge.org/archive/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples static-libs" + +RDEPEND="" +DEPEND="${RDEPEND}" + +src_install() { + autotools-utils_src_install + if use examples; then + insinto /usr/share/doc/${PF}/examples + doins examples/*.{cpp,h} + insinto /usr/share/doc/${PF}/examples/events + doins examples/events/*.dat + fi +} diff --git a/sci-physics/siscone/siscone-3.0.3.ebuild b/sci-physics/siscone/siscone-3.0.3.ebuild new file mode 100644 index 000000000000..0d54e124cd9e --- /dev/null +++ b/sci-physics/siscone/siscone-3.0.3.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Hadron Seedless Infrared-Safe Cone jet algorithm" +HOMEPAGE="http://siscone.hepforge.org/" +SRC_URI="http://www.hepforge.org/archive/${PN}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples static-libs" + +RDEPEND="" +DEPEND="${RDEPEND}" + +src_configure() { + econf $(use_enable static-libs static) +} + +src_install() { + default + if use examples; then + docinto examples + dodoc examples/*.{cpp,h} + docinto examples/events + dodoc examples/events/*.dat + docompress -x /usr/share/doc/${PF}/examples + fi +} diff --git a/sci-physics/thepeg/Manifest b/sci-physics/thepeg/Manifest new file mode 100644 index 000000000000..af7b536619bf --- /dev/null +++ b/sci-physics/thepeg/Manifest @@ -0,0 +1,13 @@ +AUX thepeg-1.8.3-java.patch 922 SHA256 1b71b643587a784699dae94d601de1eb3b352e2e6a91126105121b0e631972ef SHA512 2c2bd711e6a96e3e8ab12b313929b7e4814b69bd7f7631e137c233ec2478d4538299113c035ed94b8e58aa1195b0c8cdc21d23996fbecbb0319815b162556699 WHIRLPOOL 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8c90e20af8ad8558df22dba90cb9c505e473d4d7e5c27813d32f8fec376ed4315e7a3ea0edc07967b5a7e9490f459c13093f62c11a70a34f2593f2a12c3b3d3c WHIRLPOOL 83aeb59f9fe1887d709f99c6332d91b9c9bc5b22cdc3d8e5b3b094200e87b36440e0dc8efa672c5727b5b9dda224c1e1988cea82a14460be230ebe423fefc66d +EBUILD thepeg-2.0.0.ebuild 2345 SHA256 4f905b5756b15c630153655dd63e0c45b5013201f5d6809d33692eeead68b6ca SHA512 3ef17477953fdabbf805344ffce4f22027855e9dfe2a5dec8580c3e144cb891f3bf36bc58ecc11a32da78a707d07afed666ca7eb26d3f9a9d3d72250a29710ba WHIRLPOOL cb1e29986057180eb1cd56a53b2850b93c50469700445250ec1f541635f0ba10d5289c3491aa5e69c463611ebc472b57a13c6fd125a79f5e7ec8f5edf8f494ff +EBUILD thepeg-2.0.4.ebuild 2227 SHA256 bca027985043510c847504f9f4019143db82c16c9921cf0c846aa7e9f5de9687 SHA512 72b7869e9e56d947849be6c0291cce6ae1607d77757e1364e4b03e7efea97b19f6e33588e111bafc96633d5086ec5aa3be5c095c33d04d25dba2d4d35c1775c7 WHIRLPOOL 7b2740d5f5aeb509d2cd3b78cd1d7cd1c4ec92e1eae898128c55d0ab9deab409e771353ca097af31032d35a58fa79baedd101cc31fe30fb854b07d28288f992d +MISC ChangeLog 2509 SHA256 db8c890f569e40913ae9e04256171410866681c8c0495de42eb4e71402b181cf SHA512 af2248e7a2a9d4fb1565422d4525e63499a5d77fc5ff51ebee68be2ed5bd9bd747706189cf96a81809b017ffe7fb450793969fa7fdac9f1b7f0d7da3c9ec58f1 WHIRLPOOL af83ca0f3ed92fe2cafb1d50226c8e335039d8c391e46f4f58a79e1030b5f45abf111c6784f5241a1debe7e4b23142e4f15cf79b3736f856983ead64fc136319 +MISC metadata.xml 1066 SHA256 a49853a487c0f8618d6d6529eaa1da6d6a5028ba75ab6c9dd81cfbe580d6b7ea SHA512 f42af9eb2e0cb212ed9c374b9da6775f4857435c5cb418ebef15f39b061b0a2ddb85269aff102e40cc499a9834cb16d24e44d3b3de9de3a26078edfc7162eac5 WHIRLPOOL 3d29946d0a2bdd4eb0dc71ffde636be576482a203e94997ed89eeb30da5c3db6dd3852fb38526306a762965f3676935d47093c10fbfa88f226db62b267bbb10b diff --git a/sci-physics/thepeg/files/thepeg-1.8.3-java.patch b/sci-physics/thepeg/files/thepeg-1.8.3-java.patch new file mode 100644 index 000000000000..305207ef779f --- /dev/null +++ b/sci-physics/thepeg/files/thepeg-1.8.3-java.patch @@ -0,0 +1,37 @@ +--- a/java/Makefile.am ++++ b/java/Makefile.am +@@ -11,8 +12,7 @@ + + CLEANFILES = ThePEG.jar thepeg.sh + +-jardir = $(pkglibdir) +-nodist_jar_DATA = ThePEG.jar ++noinst_DATA = ThePEG.jar + + dist_noinst_DATA = $(JAVASOURCES) jar-manifest + +@@ -34,7 +34,7 @@ + $(JAR) cmf ThePEG/jar-manifest ThePEG.jar ThePEG/*.class + + thepeg.sh: thepeg.install Makefile +- sed -e s:@pkglibdir[@]:$(pkglibdir):g \ ++ sed -e s:@datadir[@]:$(datadir):g \ + -e s:@bindir[@]:$(bindir):g \ + -e s:@java[@]:$(JAVA):g $(srcdir)/thepeg.install > thepeg.sh + chmod +x thepeg.sh +--- a/java/thepeg.install ++++ b/java/thepeg.install +@@ -1,6 +1,6 @@ + #!/bin/sh + +-pkglibdir=@pkglibdir@ ++source @datadir@/thepeg/package.env + bindir=@bindir@ + + ThePEG_CMD="${bindir}/setupThePEG" +@@ -19,4 +19,4 @@ + + + +-exec @java@ ${HEADLESS} -jar ${pkglibdir}/ThePEG.jar ${ThePEG_CMD} "$@" ++exec @java@ ${HEADLESS} -jar ${CLASSPATH} ${ThePEG_CMD} "$@" diff --git a/sci-physics/thepeg/metadata.xml b/sci-physics/thepeg/metadata.xml new file mode 100644 index 000000000000..b98a9450c6f2 --- /dev/null +++ b/sci-physics/thepeg/metadata.xml @@ -0,0 +1,24 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription> + Toolkit for High Energy Physics Event Generation. + ThePEG has been broken out from the PYTHIA7 program + to better factorize the parts which were PYTHIA-specific + from those which are general model-independent components + of the toolkit and which can be used by any event generator model. + </longdescription> + <use> + <flag name="c++11">Build ThePEG using the C++11 standard. + Experimental feature, not for production use.</flag> + <flag name="fastjet">Adds support for <pkg>sci-physics/fastjet</pkg></flag> + <flag name="hepmc">Adds support for High Energy Physics Monte Carlo + Generators <pkg>sci-physics/hepmc</pkg></flag> + <flag name="lhapdf">Adds support for <pkg>sci-physics/lhapdf</pkg></flag> + <flag name="rivet">Adds support for <pkg>sci-physics/rivet</pkg></flag> + </use> +</pkgmetadata> diff --git a/sci-physics/thepeg/thepeg-1.9.2.ebuild b/sci-physics/thepeg/thepeg-1.9.2.ebuild new file mode 100644 index 000000000000..c9f56f360928 --- /dev/null +++ b/sci-physics/thepeg/thepeg-1.9.2.ebuild @@ -0,0 +1,96 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_AUTORECONF=1 +AUTOTOOLS_IN_SOURCE_BUILD=1 + +inherit autotools-utils elisp-common eutils java-pkg-opt-2 + +MYP=ThePEG-${PV} + +DESCRIPTION="Toolkit for High Energy Physics Event Generation" +HOMEPAGE="http://home.thep.lu.se/ThePEG/" + +TEST_URI="http://www.hepforge.org/archive/lhapdf/pdfsets/current" +SRC_URI="http://www.hepforge.org/archive/thepeg/${MYP}.tar.bz2 + test? ( hepmc? ( + ${TEST_URI}/cteq6ll.LHpdf + ${TEST_URI}/cteq5l.LHgrid + ${TEST_URI}/GRV98nlo.LHgrid + ${TEST_URI}/MRST2001nlo.LHgrid ) )" +LICENSE="GPL-2" + +SLOT="0/18" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="c++11 emacs fastjet hepmc java lhapdf rivet static-libs test zlib" + +RDEPEND=" + sci-libs/gsl:0= + emacs? ( virtual/emacs ) + fastjet? ( sci-physics/fastjet:0= ) + hepmc? ( sci-physics/hepmc:0= ) + java? ( >=virtual/jre-1.5:* ) + lhapdf? ( sci-physics/lhapdf:0= ) + rivet? ( sci-physics/rivet:0= ) + zlib? ( sys-libs/zlib:0= )" +DEPEND="${RDEPEND} + test? ( sys-process/time )" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}"/${PN}-1.8.3-java.patch ) + +src_prepare() { + find -name 'Makefile.am' -exec \ + sed -i -e '1ipkgdatadir=$(datadir)/thepeg' {} \; || die + # trick to force c++ linking + sed -i \ + -e '1inodist_EXTRA_libThePEG_la_SOURCES = dummy.cxx' \ + -e '/dist_pkgdata_DATA = ThePEG.el/d' \ + lib/Makefile.am || die + autotools-utils_src_prepare + java-pkg-opt-2_src_prepare +} + +src_configure() { + local myeconfargs=( + $(use_enable c++11 stdcxx11) + $(use_with fastjet fastjet "${EPREFIX}"/usr) + $(use_with hepmc hepmc "${EPREFIX}"/usr) + $(use_with java javagui) + $(use_with lhapdf lhapdf "${EPREFIX}"/usr) + $(use_with rivet rivet "${EPREFIX}"/usr) + $(use_with zlib zlib "${EPREFIX}"/usr) + ) + autotools-utils_src_configure +} + +src_compile() { + autotools-utils_src_compile + use emacs && elisp-compile lib/ThePEG.el +} + +src_test() { + emake LHAPATH="${DISTDIR}" -C "${BUILD_DIR}" check +} + +src_install() { + autotools-utils_src_install + use emacs && elisp-install ${PN} lib/ThePEG.el{,c} + use java && java-pkg_newjar java/ThePEG.jar + + cat <<-EOF > "${T}"/50${PN} + LDPATH="${EPREFIX}/usr/$(get_libdir)/ThePEG" + EOF + doenvd "${T}"/50${PN} +} + +pkg_postinst() { + use emacs && elisp-site-regen +} + +pkg_postrm() { + use emacs && elisp-site-regen +} diff --git a/sci-physics/thepeg/thepeg-2.0.0.ebuild b/sci-physics/thepeg/thepeg-2.0.0.ebuild new file mode 100644 index 000000000000..dc94272fe72e --- /dev/null +++ b/sci-physics/thepeg/thepeg-2.0.0.ebuild @@ -0,0 +1,96 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_AUTORECONF=1 +AUTOTOOLS_IN_SOURCE_BUILD=1 + +inherit autotools-utils elisp-common eutils java-pkg-opt-2 + +MYP=ThePEG-${PV} + +DESCRIPTION="Toolkit for High Energy Physics Event Generation" +HOMEPAGE="http://home.thep.lu.se/ThePEG/" + +TEST_URI="http://www.hepforge.org/archive/lhapdf/pdfsets/current" +SRC_URI="http://www.hepforge.org/archive/thepeg/${MYP}.tar.bz2 + test? ( hepmc? ( + ${TEST_URI}/cteq6ll.LHpdf + ${TEST_URI}/cteq5l.LHgrid + ${TEST_URI}/GRV98nlo.LHgrid + ${TEST_URI}/MRST2001nlo.LHgrid ) )" +LICENSE="GPL-2" + +SLOT="0/20" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="c++11 emacs fastjet hepmc java lhapdf rivet static-libs test zlib" + +RDEPEND=" + sci-libs/gsl:0= + emacs? ( virtual/emacs ) + fastjet? ( sci-physics/fastjet:0= ) + hepmc? ( sci-physics/hepmc:0= ) + java? ( >=virtual/jre-1.5:* ) + lhapdf? ( sci-physics/lhapdf:0= ) + rivet? ( sci-physics/rivet:0= ) + zlib? ( sys-libs/zlib:0= )" +DEPEND="${RDEPEND} + test? ( sys-process/time )" + +S="${WORKDIR}/${MYP}" + +PATCHES=( "${FILESDIR}"/${PN}-1.8.3-java.patch ) + +src_prepare() { + find -name 'Makefile.am' -exec \ + sed -i -e '1ipkgdatadir=$(datadir)/thepeg' {} \; || die + # trick to force c++ linking + sed -i \ + -e '1inodist_EXTRA_libThePEG_la_SOURCES = dummy.cxx' \ + -e '/dist_pkgdata_DATA = ThePEG.el/d' \ + lib/Makefile.am || die + autotools-utils_src_prepare + java-pkg-opt-2_src_prepare +} + +src_configure() { + local myeconfargs=( + $(use_enable c++11 stdcxx11) + $(use_with fastjet fastjet "${EPREFIX}"/usr) + $(use_with hepmc hepmc "${EPREFIX}"/usr) + $(use_with java javagui) + $(use_with lhapdf lhapdf "${EPREFIX}"/usr) + $(use_with rivet rivet "${EPREFIX}"/usr) + $(use_with zlib zlib "${EPREFIX}"/usr) + ) + autotools-utils_src_configure +} + +src_compile() { + autotools-utils_src_compile + use emacs && elisp-compile lib/ThePEG.el +} + +src_test() { + emake LHAPATH="${DISTDIR}" -C "${BUILD_DIR}" check +} + +src_install() { + autotools-utils_src_install + use emacs && elisp-install ${PN} lib/ThePEG.el{,c} + use java && java-pkg_newjar java/ThePEG.jar + + cat <<-EOF > "${T}"/50${PN} + LDPATH="${EPREFIX}/usr/$(get_libdir)/ThePEG" + EOF + doenvd "${T}"/50${PN} +} + +pkg_postinst() { + use emacs && elisp-site-regen +} + +pkg_postrm() { + use emacs && elisp-site-regen +} diff --git a/sci-physics/thepeg/thepeg-2.0.4.ebuild b/sci-physics/thepeg/thepeg-2.0.4.ebuild new file mode 100644 index 000000000000..84e48567e16a --- /dev/null +++ b/sci-physics/thepeg/thepeg-2.0.4.ebuild @@ -0,0 +1,93 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools elisp-common java-pkg-opt-2 + +MY_P=ThePEG-${PV} + +DESCRIPTION="Toolkit for High Energy Physics Event Generation" +HOMEPAGE="http://home.thep.lu.se/ThePEG/" + +TEST_URI="http://www.hepforge.org/archive/lhapdf/pdfsets/current" +SRC_URI="http://www.hepforge.org/archive/thepeg/${MY_P}.tar.bz2 + test? ( hepmc? ( + ${TEST_URI}/cteq6ll.LHpdf + ${TEST_URI}/cteq5l.LHgrid + ${TEST_URI}/GRV98nlo.LHgrid + ${TEST_URI}/MRST2001nlo.LHgrid ) )" +LICENSE="GPL-2" + +SLOT="0/20" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="c++11 emacs fastjet hepmc java lhapdf rivet static-libs test zlib" + +RDEPEND=" + sci-libs/gsl:0= + emacs? ( virtual/emacs ) + fastjet? ( sci-physics/fastjet:0= ) + hepmc? ( sci-physics/hepmc:0= ) + java? ( >=virtual/jre-1.5:* ) + lhapdf? ( >=sci-physics/lhapdf-6.0:0= ) + rivet? ( sci-physics/rivet:0= ) + zlib? ( sys-libs/zlib:0= )" +DEPEND="${RDEPEND} + test? ( sys-process/time )" + +S="${WORKDIR}/${MY_P}" + +PATCHES=( "${FILESDIR}"/${PN}-1.8.3-java.patch ) + +src_prepare() { + find -name 'Makefile.am' -exec \ + sed -i -e '1ipkgdatadir=$(datadir)/thepeg' {} \; || die + # trick to force c++ linking + sed -i \ + -e '1inodist_EXTRA_libThePEG_la_SOURCES = dummy.cxx' \ + -e '/dist_pkgdata_DATA = ThePEG.el/d' \ + lib/Makefile.am || die + default + java-pkg-opt-2_src_prepare + eautoreconf +} + +src_configure() { + econf \ + $(use_enable static-libs static) \ + $(use_enable c++11 stdcxx11) \ + $(use_with fastjet fastjet "${EPREFIX}"/usr) \ + $(use_with hepmc hepmc "${EPREFIX}"/usr) \ + $(use_with java javagui) \ + $(use_with lhapdf lhapdf "${EPREFIX}"/usr) \ + $(use_with rivet rivet "${EPREFIX}"/usr) \ + $(use_with zlib zlib "${EPREFIX}"/usr) +} + +src_compile() { + default + use emacs && elisp-compile lib/ThePEG.el +} + +src_test() { + emake LHAPATH="${DISTDIR}" check +} + +src_install() { + default + use emacs && elisp-install ${PN} lib/ThePEG.el{,c} + use java && java-pkg_newjar java/ThePEG.jar + + cat <<-EOF > "${T}"/50${PN} + LDPATH="${EPREFIX}/usr/$(get_libdir)/ThePEG" + EOF + doenvd "${T}"/50${PN} +} + +pkg_postinst() { + use emacs && elisp-site-regen +} + +pkg_postrm() { + use emacs && elisp-site-regen +} diff --git a/sci-physics/xfoil/Manifest b/sci-physics/xfoil/Manifest new file mode 100644 index 000000000000..c040948c29ff --- /dev/null +++ b/sci-physics/xfoil/Manifest @@ -0,0 +1,11 @@ +AUX xfoil-6.96-gfortran.patch 920 SHA256 2f4f34aabea6d715ef61d0c71acf629888d74740e9d9b3d5055fe0d68c1c1ec9 SHA512 7f708a3176a08367b125cbe30dcb1830e05df55706e32b5e8964317d0bf961ba0032dd7237f3a721ec3d7b813792decfb9a6d4e750fbb72d70a92a26b1d287ef WHIRLPOOL 4705980e3e5573c9361d262b25bed45316fbc58b37db2985d0506a03191f629e2e4d94874fc41e5eda10fa5fe248d088bd8ff1b3702472d90c278808e1c8fbaf +AUX xfoil-6.97-overflow.patch 558 SHA256 8c17bc84c000147cfc50915690244cb1b6e801c9e5e1e4cad8eb5f4190d94df4 SHA512 98e12c43fe8b2cbb06595c09f0a65ebf25271649918272672bd72e7132792f6be107874b6ecd6cf49e18e5cbf970ae043da30c3e33e659b155115bb00bfd5a47 WHIRLPOOL 7be53a8627fa7c2c99cc88c4148a379b82b3ed10a6ccfaf30a311b9ffbf538ce1347700f12d44ddbc2083c785b72b7ffb9102369d71f264d2f5e3567140a0b99 +AUX xfoil-6.99-overflow.patch 399 SHA256 8b3c7b22c4439936ec4c66c09cb71288903d43ea238d6bf275499475bf0c8f6b SHA512 8d6defa10c11c204128bea359461da12c3780f178d9738071f5f111d26d6151adbfa67e6898b814df4740e6b7006f5bbbd6ec3bc4ddf65fb511b1ffdf79c468f WHIRLPOOL 98be0c2ecf87579a00a03467c5007ff66905a2c6f52aa3eea1bff13dce4a8b16dc76e61a1f03c2933f1bf999ffdccb4b813a7e5424ca72b3a2a19848a6386451 +DIST dataflow.pdf 7654 SHA256 4596c77a3fa24cd334b35c34fcbd0b4f1d9055273c0862643e2d07b5e774aff5 SHA512 1bb5be8e70fca1fa90f28d214140e96a8795c7d82a37f4fe4d68606fa3eb28252913b8fb13eb3e97a3cf05c3001c88dbfcdb8a2f20d4baed5e730770a2d602b1 WHIRLPOOL 8e13137933ae0e8edc2890ccdd0537444d5fa9530e76caefb3701173c7720d2cb68d9073b70e7948a11ed6668dcd64b3685c750f5cef889c31d1506d3788a530 +DIST xfoil6.97.tar.gz 3972497 SHA256 293e28e269bd88a62f8b6ba6bf684f16843f6776736e6b77aaa8b6bebc467a81 SHA512 02c0a123fb99fa20de1e3577ca7c6ce00d494058f2ef3ec82e3fdea48901f4346180aea3436e001c5b90401007ccdd5b7e9daa6a96794f0d6b5781a5b36e36e7 WHIRLPOOL 3de5e6c56a906a71b2be1fcf39ea031454c9192b4a649a23aaa889566fea2e92b37239fa6ed90c4b050bdb5759943d0265881f316ecd5b48a06fe4217af36ef7 +DIST xfoil6.99.tgz 4515991 SHA256 5c0250643f52ce0e75d7338ae2504ce7907f2d49a30f921826717b8ac12ebe40 SHA512 6f5bed520826dba2efd1b191b1f90dd810b53d9041cbbaddde09207ba9042f99dd0c9e9aa8b8cdf48767bf2695e328ac8fbd297e1510e53ac10b0f1eea35cfef WHIRLPOOL 88ca7c92fb1335f416577dc7df67e22581a32b56affb234f440b9523122429ad7ad37455e3270461909b0eb3d181013daa3db0e869086e218e2eaf5bf5f4e3ce +EBUILD xfoil-6.97-r1.ebuild 1757 SHA256 9aef8831214a2b71f993d25e3840e0622f379e6ef4825177efc3a14a1bd5f1fb SHA512 e17aff9ca7fde8c9aacfd82364f20f01e3081a63b6c5dd9a27f09e5b7236c4915264bf3a3df510a37ab11a6ba010eadece099e3cfd658d83aa55c0d93f4e4959 WHIRLPOOL 4664c4cb3b1b81b9af9ab64e2d0ae101776a486bb812494873f08db216583841cfaefa29a888c76f1c622820f49b8b00ee40eeb652e1fb5ba4af8b30d0ec41e4 +EBUILD xfoil-6.99.ebuild 1796 SHA256 59cf910244158dfef838ad81852aacf921e259c14542e3ff4f8300078a5e950b SHA512 9f85697b7c355c17ac24ca7971de844af2e2ad194fda2d88cfbaf6945ef35f915dcbf89f2bf46f5e8afd9ad4a064ee25ebdb4a31095726b090a32035b49e001e WHIRLPOOL cf05a3d4af2f13175f0f25a3cfd89b3c3409d9f4a39af03e1f997d2361b2d6a6b881ebc325192b3335c28b1b27e102f53d27b47a30c3b4a693088690416ef060 +MISC ChangeLog 3053 SHA256 7031ae77dad1fbdb0e60b5e023b1eb36aa35c302c265f6cef08b1233e0927420 SHA512 c057e66ad560aee9457f60257b219c251c24fd3082e8bf0811864b325d827ee3f49f9c8ad9f6f27b095721d31a6cfc5e173198e4894361a2523b6759e45a7f45 WHIRLPOOL 7b01d55f8a8db197ceb243296df9c61b2947210fffd6ae2a3409ffd89351424247d30ef9bf4df0e9f99a0c80f4d2110ce747c182218ae53acd1058f0fc31d380 +MISC ChangeLog-2015 3764 SHA256 dd6f4885236409f0c33989b483444cdde05c93d57785fc16478211d4c90ce1b9 SHA512 970115eff91fdbc7c7b1953156b53468f7334694441a379d79fc4abd52aa88570fd18683561fdbdabaa3a08cc3bd2ab3fc8219774437e0accaa4522dd1643bee WHIRLPOOL 5ddab93da3802fb49140474d87319f4d5af0b340110e9d4ccdcc70fab0bae03e2c5a2c603f06ce6b6c3aed6edede66c76693cea3797bf06ea4ac8b827a664b8e +MISC metadata.xml 980 SHA256 3ee003c7965d6b6bb89c8f918c6e569cf0d917d7fde9887da6f1e2a86e6dfb59 SHA512 7f08a27aabf08fcaed680a4422b318aac095cafef30677cf6b9d5d0336856249b4bd407a364eebf713e321c481c650352e8b12f8242980a6482b745f7c9315af WHIRLPOOL 1141aa7c20df256a35b55b98acad86e289b8fdaf1ae74c1d01f066536b861960e307ec738130ea3d891147eed8e855609522e4c8c20bfc9f0daf1518a50f6094 diff --git a/sci-physics/xfoil/files/xfoil-6.96-gfortran.patch b/sci-physics/xfoil/files/xfoil-6.96-gfortran.patch new file mode 100644 index 000000000000..b63db05b254c --- /dev/null +++ b/sci-physics/xfoil/files/xfoil-6.96-gfortran.patch @@ -0,0 +1,29 @@ +--- a/plotlib/ps_subs.f ++++ b/plotlib/ps_subs.f +@@ -559,7 +559,7 @@ + c in the iout array (3,1,3,1,3,1,3,1) + c Note: the bit mask is shifted to always start counting on a '1' bit. + c +-c--- Uses the library routines and() and rshift() for bit manipulation ++c--- Uses the library routines and() and ishft() for bit manipulation + c which are present in most fortran libraries as extensions to f77. + c + dimension iout(*) +@@ -570,7 +570,7 @@ + ibitold = and(1,imask) + if(ibitold.NE.0) go to 5 + nshft = n +- imask = rshift(imask,1) ++ imask = ishft(imask,-1) + end do + c + 5 nout = 0 +@@ -594,7 +594,7 @@ + c + ibitold = ibit + nbits = nbits + 1 +- imask = rshift(imask,1) ++ imask = ishft(imask,-1) + end do + c--- Add final bit(s) to end of 16 bits checked + c--- Now append any zero bits shifted out originally diff --git a/sci-physics/xfoil/files/xfoil-6.97-overflow.patch b/sci-physics/xfoil/files/xfoil-6.97-overflow.patch new file mode 100644 index 000000000000..6f71440f050c --- /dev/null +++ b/sci-physics/xfoil/files/xfoil-6.97-overflow.patch @@ -0,0 +1,22 @@ +--- a/src/pplot.f ++++ b/src/pplot.f +@@ -36,7 +36,7 @@ + PROGRAM PPLOT + INCLUDE 'PPLOT.INC' + C +- LOGICAL ERROR, LGETFN ++ LOGICAL ERROR, LGETFN, LERR + REAL RINP(10) + REAL CPOLO(NAX,IPTOT,NPX), VPOLO(NAX,2,NPX) + C +--- a/src/xoper.f ++++ b/src/xoper.f +@@ -114,7 +114,7 @@ + C---- don't try to read integers, since might get integer overflow + DO I=1, NINPUT + IF(ABS(RINPUT(I)) .GT. 2.1E9) THEN +- IINPUT(I) = 2**31 ++ IINPUT(I) = HUGE(0) + ELSE + IINPUT(I) = INT(RINPUT(I)) + ENDIF diff --git a/sci-physics/xfoil/files/xfoil-6.99-overflow.patch b/sci-physics/xfoil/files/xfoil-6.99-overflow.patch new file mode 100644 index 000000000000..d35528caa089 --- /dev/null +++ b/sci-physics/xfoil/files/xfoil-6.99-overflow.patch @@ -0,0 +1,11 @@ +--- Xfoil/src/xoper.f.orig 2013-12-08 22:21:22.000000000 +0400 ++++ Xfoil/src/xoper.f 2017-03-05 23:02:33.214895357 +0300 +@@ -114,7 +114,7 @@ + C---- don't try to read integers, since might get integer overflow + DO I=1, NINPUT + IF(ABS(RINPUT(I)) .GT. 2.1E9) THEN +- IINPUT(I) = 2**30 ++ IINPUT(I) = HUGE(0) + ELSE + IINPUT(I) = INT(RINPUT(I)) + ENDIF diff --git a/sci-physics/xfoil/metadata.xml b/sci-physics/xfoil/metadata.xml new file mode 100644 index 000000000000..d754bd62132e --- /dev/null +++ b/sci-physics/xfoil/metadata.xml @@ -0,0 +1,21 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>robbat2@gentoo.org</email> + </maintainer> + <maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> + </maintainer> + <longdescription lang="en"> + XFOIL is an interactive program for the design and analysis of subsonic isolated airfoils. + It consists of a collection of menu-driven routines which perform various useful functions such as: + * Viscous (or inviscid) analysis of an existing airfoil + * Airfoil design and redesign by interactive modification of surface speed distributions + * Airfoil redesign by interactive modification of geometric parameters + * Blending of airfoils + * Writing and reading of airfoil coordinates and polar save files + * Plotting of geometry, pressure distributions, and multiple polars +</longdescription> +</pkgmetadata> diff --git a/sci-physics/xfoil/xfoil-6.97-r1.ebuild b/sci-physics/xfoil/xfoil-6.97-r1.ebuild new file mode 100644 index 000000000000..4582882797f9 --- /dev/null +++ b/sci-physics/xfoil/xfoil-6.97-r1.ebuild @@ -0,0 +1,74 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit fortran-2 + +DESCRIPTION="Design and analysis of subsonic isolated airfoils" +HOMEPAGE="http://raphael.mit.edu/xfoil/" +SRC_URI=" + http://web.mit.edu/drela/Public/web/${PN}/${PN}${PV}.tar.gz + doc? ( http://web.mit.edu/drela/Public/web/${PN}/dataflow.pdf )" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples" + +RDEPEND="x11-libs/libX11" +DEPEND="${RDEPEND}" + +PATCHES=( "${FILESDIR}"/${P}-overflow.patch ) + +S="${WORKDIR}/${PN^}" + +src_prepare() { + # fix bug #147033 + [[ $(tc-getFC) == *gfortran ]] && PATCHES+=( "${FILESDIR}"/${PN}-6.96-gfortran.patch ) + default + + sed \ + -e '/^FC/d' \ + -e '/^CC/d' \ + -e '/^FFLAGS/d' \ + -e '/^CFLAGS/d' \ + -e 's/^\(FFLOPT .*\)/FFLOPT = $(FFLAGS)/g' \ + -i {bin,plotlib,orrs/bin}/Makefile plotlib/config.make \ + || die "sed for flags and compilers failed" + + sed \ + -e "s:/var/local/codes/orrs/osmap.dat:${EPREFIX}/usr/share/xfoil/orrs/osmap.dat:" \ + -i orrs/src/osmap.f || die "sed osmap.f failed" +} + +src_compile() { + emake -C orrs/bin FLG="${FFLAGS}" FTNLIB="${LDFLAGS}" OS + pushd orrs >/dev/null || die + bin/osgen osmaps_ns.lst + popd >/dev/null || die + emake -C plotlib CFLAGS="${CFLAGS} -DUNDERSCORE" + + local i + for i in xfoil pplot pxplot; do + emake -C bin \ + PLTOBJ="../plotlib/libPlt.a" \ + CFLAGS="${CFLAGS} -DUNDERSCORE" \ + FTNLIB="${LDFLAGS}" \ + $i + done +} + +src_install() { + dobin bin/{pplot,pxplot,xfoil} + insinto /usr/share/xfoil/orrs + doins orrs/osm*.dat + + local DOCS=( *.txt README ) + use doc && DOCS+=( "${DISTDIR}"/dataflow.pdf ) + einstalldocs + if use examples; then + dodoc -r runs + docompress -x /usr/share/doc/${PF}/runs + fi +} diff --git a/sci-physics/xfoil/xfoil-6.99.ebuild b/sci-physics/xfoil/xfoil-6.99.ebuild new file mode 100644 index 000000000000..ab0b383ef990 --- /dev/null +++ b/sci-physics/xfoil/xfoil-6.99.ebuild @@ -0,0 +1,75 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit fortran-2 + +DESCRIPTION="Design and analysis of subsonic isolated airfoils" +HOMEPAGE="http://raphael.mit.edu/xfoil/" +SRC_URI=" + http://web.mit.edu/drela/Public/web/${PN}/${PN}${PV}.tgz + doc? ( http://web.mit.edu/drela/Public/web/${PN}/dataflow.pdf )" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples" + +RDEPEND="x11-libs/libX11" +DEPEND="${RDEPEND}" + +PATCHES=( "${FILESDIR}"/${P}-overflow.patch ) + +S="${WORKDIR}/${PN^}" + +src_prepare() { + # fix bug #147033 + [[ $(tc-getFC) == *gfortran ]] && PATCHES+=( "${FILESDIR}"/${PN}-6.96-gfortran.patch ) + default + + sed \ + -e '/^FC/d' \ + -e '/^CC/d' \ + -e '/^FFLAGS/d' \ + -e '/^CFLAGS/d' \ + -e '/INSTALLCMD/d' \ + -e 's/^\(FFLOPT .*\)/FFLOPT = $(FFLAGS)/g' \ + -i {bin,plotlib,orrs/bin}/Makefile plotlib/config.make \ + || die "sed for flags and compilers failed" + + sed \ + -e "s:/var/local/codes/orrs/osmap.dat:${EPREFIX}/usr/share/xfoil/orrs/osmap.dat:" \ + -i orrs/src/osmap.f || die "sed osmap.f failed" +} + +src_compile() { + emake -C orrs/bin FLG="${FFLAGS}" FTNLIB="${LDFLAGS}" OS + pushd orrs >/dev/null || die + bin/osgen osmaps_ns.lst || die + popd >/dev/null || die + emake -C plotlib CFLAGS="${CFLAGS} -DUNDERSCORE" + + local i + for i in blu pplot pxplot xfoil; do + emake -C bin \ + PLTOBJ="../plotlib/libPlt_gSP.a" \ + CFLAGS="${CFLAGS} -DUNDERSCORE" \ + FTNLIB="${LDFLAGS}" \ + $i + done +} + +src_install() { + dobin bin/{blu,pplot,pxplot,xfoil} + insinto /usr/share/xfoil/orrs + doins orrs/osm*.dat + + local DOCS=( *.txt README ) + use doc && DOCS+=( "${DISTDIR}"/dataflow.pdf ) + einstalldocs + if use examples; then + dodoc -r runs + docompress -x /usr/share/doc/${PF}/runs + fi +} diff --git a/sci-physics/yoda/Manifest b/sci-physics/yoda/Manifest new file mode 100644 index 000000000000..e67739a468ac --- /dev/null +++ b/sci-physics/yoda/Manifest @@ -0,0 +1,6 @@ +DIST YODA-1.4.0.tar.bz2 809432 SHA256 e76a129f7c2b72b53525fe0b712606eeeab0dc145daa070ebf0728f0384eaf48 SHA512 f1873888f3d2c28d42ac54fa9f3fa4a98e648a638ebceffce0a2f742c5fb6647fabd0de49c00407741e937600fc8a12d33ca26b8b9cd9b81c28a4d2e11f2bd3a WHIRLPOOL 6c8e0176b729d951351b3b9d574c91add5d6302aa76417241e560f3f3bbf38f4b60f41713d89a03a62b1c4ad3a98bd5342fd05901671e6aedf0c2c11dc36b024 +DIST YODA-1.6.5.tar.bz2 818613 SHA256 1477fe754cfe2e4e06aa363a773accf18aab960a8b899968b77834368cac14c5 SHA512 bead0a3ada233c1fbafe66d25e65262c20d9a9dfa6265440320a0fc782e91b3ac6581698e2015d86f2b58dc305dedbc48ed648ff03ec9f6abc11a7fb27938b1a WHIRLPOOL b6b88832b89357dbf0309641f9e4180f0c0fabf917ec7f36bafe75b811b849f0cf1cf24877b468b50d340f7a1ae1575d07fc63e9ec810a318dda7adb9b9aeed7 +EBUILD yoda-1.4.0.ebuild 1112 SHA256 248324b803a85c8a657ec129a18d4d32250bd5564e879ba92624ef4231e4c18c SHA512 8417899f7db56918156257996539b29cc5756b18f606919e43a8e8a13cebedf45d966c8191065a1057c6f459c3a3a321d3dc65cbbb27e57ef57d1a4ab399c5e8 WHIRLPOOL 43661afb14d3f7bf3623854c92668d6055cc76a951b3883e5602d1c21285858d9d67fc24f0a579011ed280bcc46aeb515a3af9aa82f52479b69ecf3a62dcadbe +EBUILD yoda-1.6.5.ebuild 1042 SHA256 5fcaa76573b60a3ddcec979fc49e5026a5819c75bf54ff24f7aef2d494e3ea35 SHA512 0fe36248bd11c97839ff9a8ddcc2f0db306a16a906354289a8fca879d46b5eece81cbc2cb71334d5dd5ee3cb8a15dbea3efa5e6535183610279ea58711d45cbb WHIRLPOOL ba668558a43d32fdad6137630131c315a100c32459f4a3064d9c075d9638125bbae52e754da713507b8358238dba53a47288b5af7c9de454b1c9bc8100083021 +MISC ChangeLog 1872 SHA256 7d953111ff71d6a07e5e65ccbda05ed550f1b470431232ab4ecc98a91248c475 SHA512 8f888c3cf1075aa3ee06d2b9145de4d442fb3b16e9c9e1fea88255faddf5c639e44b9fbb9867e740d9b600fcb4b08d30252a5ffb93d90cc38a7d58ef80dc1760 WHIRLPOOL f7dce5f56e3a01e239e9e42b7f3d43cb4dfbb75662ddc8e97e25e4340b52b7f78a8c6442f8b4bdec5180d6f2a69c4a074569a197a3fdd0359d7520ef094352dc +MISC metadata.xml 719 SHA256 42c63651baa2238ff23f6647011ab4c9412829d14b87088d9a5e7bcfa39bf6e6 SHA512 e41f7be6cad26c10a4632a0d70de86793771a3c616f649d526885d960bc880c5300e08a88f9d3c97be017f3682e46a18d3ef271264a720a297355f56590c19c8 WHIRLPOOL 34fb7a46655897a5447498445d8cf618ae0df98e3653ef16cedfa77fa4ce66d806ae638a1ef0b2722aa82c50ad8b8b7ac80cb52b2281db9a5ac82e2d3c531215 diff --git a/sci-physics/yoda/metadata.xml b/sci-physics/yoda/metadata.xml new file mode 100644 index 000000000000..61a7329540bc --- /dev/null +++ b/sci-physics/yoda/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<maintainer type="project"> + <email>sci-physics@gentoo.org</email> + <name>Gentoo Physics Project</name> +</maintainer> +<longdescription> + Yet more Objects for Data Analysis is a small set of data analysis + (specifically histogramming) classes being developed by MCnet + members as a lightweight common system for MC event generator + validation analyses, particularly as the core histogramming system + in Rivet. +</longdescription> +<use> + <flag name="c++11"> Build using the C++11 standard</flag> + <flag name="root">Adds support for <pkg>sci-physics/root</pkg></flag> +</use> +</pkgmetadata> diff --git a/sci-physics/yoda/yoda-1.4.0.ebuild b/sci-physics/yoda/yoda-1.4.0.ebuild new file mode 100644 index 000000000000..81a8d7b03a90 --- /dev/null +++ b/sci-physics/yoda/yoda-1.4.0.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +AUTOTOOLS_IN_SOURCE_BUILD=1 +PYTHON_COMPAT=( python2_7 ) + +inherit python-single-r1 autotools-utils bash-completion-r1 + +MYP=YODA-${PV} + +DESCRIPTION="Yet more Objects for (High Energy Physics) Data Analysis" +HOMEPAGE="http://yoda.hepforge.org/" + +SRC_URI="http://www.hepforge.org/archive/${PN}/${MYP}.tar.bz2" +LICENSE="GPL-2" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="c++11 python root static-libs" + +RDEPEND=" + dev-libs/boost:0= + python? ( ${PYTHON_DEPS} ) + root? ( sci-physics/root:0=[python=,${PYTHON_USEDEP}] )" +DEPEND="${RDEPEND} + python? ( dev-python/cython[${PYTHON_USEDEP}] )" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MYP}" + +pkg_setup() { + use python && python-single-r1_pkg_setup +} + +src_configure() { + local myeconfargs=( + $(use_enable c++11 stdcxx11) + $(use_enable python pyext) + $(use_enable root) + ) + autotools-utils_src_configure +} + +src_install() { + autotools-utils_src_install + newbashcomp "${ED}"/usr/share/YODA/yoda-completion yoda +} diff --git a/sci-physics/yoda/yoda-1.6.5.ebuild b/sci-physics/yoda/yoda-1.6.5.ebuild new file mode 100644 index 000000000000..00d3f8949c26 --- /dev/null +++ b/sci-physics/yoda/yoda-1.6.5.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) + +inherit bash-completion-r1 python-single-r1 + +DESCRIPTION="Yet more Objects for (High Energy Physics) Data Analysis" +HOMEPAGE="http://yoda.hepforge.org/" + +SRC_URI="http://www.hepforge.org/archive/${PN}/${P^^}.tar.bz2" +LICENSE="GPL-2" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="python root static-libs" + +RDEPEND=" + dev-libs/boost:= + python? ( ${PYTHON_DEPS} ) + root? ( sci-physics/root:=[python=,${PYTHON_USEDEP}] )" +DEPEND="${RDEPEND} + python? ( dev-python/cython[${PYTHON_USEDEP}] )" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${P^^}" + +pkg_setup() { + use python && python-single-r1_pkg_setup +} + +src_configure() { + econf \ + $(use_enable python pyext) \ + $(use_enable root) \ + $(use_enable static-libs static) +} + +src_install() { + default + + newbashcomp "${ED%/}"/usr/share/YODA/yoda-completion ${PN} + rm "${ED%/}"/usr/share/YODA/yoda-completion || die +} |