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|
--- a/configure.in
+++ b/configure.in
@@ -649,33 +649,6 @@
-dnl PCRE library definitions - see the MAJOR and MINOR values
-dnl to see which version's configure.in these lines come from
-
-dnl Provide the current PCRE version information. Do not use numbers
-dnl with leading zeros for the minor version, as they end up in a C
-dnl macro, and may be treated as octal constants. Stick to single
-dnl digits for minor numbers less than 10. There are unlikely to be
-dnl that many releases anyway.
-
-PCRE_MAJOR="7"
-PCRE_MINOR="9"
-PCRE_DATE="11-Apr-2009"
-PCRE_VERSION="${PCRE_MAJOR}.${PCRE_MINOR}"
-
-dnl Default values for miscellaneous macros
-
-POSIX_MALLOC_THRESHOLD="-DPOSIX_MALLOC_THRESHOLD=10"
-
-dnl Provide versioning information for libtool shared libraries that
-dnl are built by default on Unix systems.
-
-PCRE_LIB_VERSION="0:1:0"
-PCRE_POSIXLIB_VERSION="0:0:0"
-
-
-
-
dnl FIXME: This does no longer seem required with Autoconf 2.67?
dnl Intel MacOSX 10.6 puts X11 in a non-standard place
dnl AS_IF([test "x${with_x}" != "xno"],
@@ -751,21 +724,6 @@
-dnl "Export" these variables for PCRE
-
-AC_SUBST([HAVE_MEMMOVE])
-AC_SUBST([HAVE_STRERROR])
-AC_SUBST([PCRE_MAJOR])
-AC_SUBST([PCRE_MINOR])
-AC_SUBST([PCRE_DATE])
-AC_SUBST([PCRE_VERSION])
-AC_SUBST([PCRE_LIB_VERSION])
-AC_SUBST([PCRE_POSIXLIB_VERSION])
-AC_SUBST([POSIX_MALLOC_THRESHOLD])
-
-
-
-
dnl Test if --enable-localforce given
locallink="no"
embprefix="/usr/local"
@@ -888,6 +846,13 @@
AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"])
+AS_IF([test "x${enable_systemlibs}" = "xyes"],
+[
+dnl using system libraries
+ PKG_CHECK_MODULES([PLPLOT], [plplotd],
+ [],[PKG_CHECK_MODULES([PLPLOT], [plplot])]
+ )
+])
# Enable the purify tool: --enable-purify, sets CC and LIBTOOL
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -10,7 +10,7 @@
-lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -leplplot -leexpat \
-lezlib -lepcre
else
-CYGWIN_LDVIENNA = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl \
+CYGWIN_LDVIENNA = -lnucleus -lacd -lajaxdb -lensembl \
-lajaxg -lajax -leplplot -leexpat -lezlib -lepcre
endif
endif
@@ -32,9 +32,7 @@
-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
-I../../../ajax/acd -I../../../plplot
else
-AM_CPPFLAGS = -I../H -I${embprefix}/include -I${embprefix}/include/eplplot \
- $(NLINCLUDES) \
- -I${embprefix}/include/epcre
+AM_CPPFLAGS = -I$(top_srcdir)/H -I${embprefix}/include $(NLINCLUDES) $(PLPLOT_CFLAGS)
endif
if ISSHARED
@@ -49,7 +47,7 @@
-lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre \
$(NLAIXLIBS) -leplplot
else
-AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \
+AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -lnucleus -lacd \
-lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre $(NLAIXLIBS) -leplplot
endif
endif
@@ -87,6 +85,7 @@
endif
liboviennarna_la_LDFLAGS = $(LINKFLAGS)
+liboviennarna_la_LIBADD = -lajax
ovrnaalifold_SOURCES = vrnaalifold.c
ovrnaalifoldpf_SOURCES = vrnaalifoldpf.c
@@ -118,6 +117,6 @@
../../../plplot/libeplplot.la \
$(XLIB)
else
-LDADD = liboviennarna.la -L${embprefix}/lib -lnucleus -lacd -lajaxdb \
- -lensembl -lajaxg -lajax -lepcre $(NLADD) -leplplot $(XLIB)
+LDADD = liboviennarna.la -lnucleus -lacd -lajaxdb \
+ -lensembl -lajaxg -lajax $(NLADD) $(XLIB)
endif
|