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# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit toolchain-funcs
DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
HOMEPAGE="http://www.htslib.org/"
SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
RDEPEND="
dev-lang/perl
=sci-libs/htslib-$(ver_cut 1-2)*:=
sys-libs/ncurses:=[unicode(+)]
sys-libs/zlib"
DEPEND="${RDEPEND}"
BDEPEND="virtual/pkgconfig"
src_prepare() {
default
# remove bundled htslib
rm -r htslib-* || die
}
src_configure() {
econf \
--with-ncurses \
--with-htslib=system \
CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)"
}
src_compile() {
emake AR="$(tc-getAR)"
}
src_install() {
default
dodoc -r examples
docompress -x /usr/share/doc/${PF}/examples
}
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