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diff -Nur SPR-3.3.2.orig/configure.ac SPR-3.3.2/configure.ac
--- SPR-3.3.2.orig/configure.ac 2011-03-29 05:52:30.000000000 +0100
+++ SPR-3.3.2/configure.ac 2011-05-04 00:48:43.000000000 +0100
@@ -35,9 +35,6 @@
AC_FUNC_STAT
AC_CHECK_FUNCS([gettimeofday pow sqrt])
-## Default compiler flags
-DEFAULTCXXFLAGS="-O4"
-
## ROOT installation
AC_ARG_VAR([ROOTPATH], [path to ROOT installation])
AC_ARG_WITH([root], AC_HELP_STRING([--with-root], [path to ROOT installation]),
@@ -97,7 +94,6 @@
## Test ROOT libs
AC_MSG_CHECKING([ROOT libraries])
if test -f ${ROOTLIBPATH}/libCore.so; then
- DEFAULTCXXFLAGS="-O2"
AC_MSG_RESULT([using ROOT libraries in $ROOTLIBPATH])
else
AC_MSG_WARN([ROOT libraries not found under $ROOTLIBPATH... disabling ROOT])
@@ -117,16 +113,6 @@
################################
-## Set default compiler flags if CXXFLAGS not defined
-if test -z "$CXXFLAGS"; then
- CXXFLAGS=$DEFAULTCXXFLAGS
-fi
-
-
-AM_CXXFLAGS="-ansi -pedantic"
-AC_SUBST(AM_CPPFLAGS)
-AC_SUBST(AM_CXXFLAGS)
-AC_SUBST(CXXFLAGS)
AC_CONFIG_FILES(Makefile)
AC_CONFIG_FILES(math/Makefile)
diff -Nur SPR-3.3.2.orig/data/Makefile.am SPR-3.3.2/data/Makefile.am
--- SPR-3.3.2.orig/data/Makefile.am 2011-03-29 05:52:30.000000000 +0100
+++ SPR-3.3.2/data/Makefile.am 2011-03-29 05:54:19.000000000 +0100
@@ -1,4 +1,5 @@
-dist_data_DATA = \
+
+pkgdata_DATA = \
discrete_square.pat gausscorr_uniform_2d_train.pat \
gauss2_uniform_2d_train.pat trainRoot.pat \
gauss2_uniform_2d_valid.pat triangle_square_00_train.pat \
@@ -9,4 +10,4 @@
lambda-test.pat cmc.data \
gauss2_uniform_2d_train_root.pat mlp_root.pat \
tmva_root.pat cleveland.data \
-samplematrixindicator.cfg
\ No newline at end of file
+samplematrixindicator.cfg
diff -Nur SPR-3.3.2.orig/src/Makefile.am SPR-3.3.2/src/Makefile.am
--- SPR-3.3.2.orig/src/Makefile.am 2011-03-29 05:52:30.000000000 +0100
+++ SPR-3.3.2/src/Makefile.am 2011-05-04 00:45:22.000000000 +0100
@@ -1,20 +1,14 @@
lib_LTLIBRARIES = libSPR.la
AM_CPPFLAGS = -I$(top_srcdir)/include -I$(top_srcdir)
-AM_LDFLAGS = -L/usr/lib -L$(top_srcdir)/src
-AM_LIBS = -lSPR
-APPLDADD = -lSPR
+
if WITH_ROOT
- AM_CXXFLAGS += $(ROOTCXXFLAGS) -O2
+ AM_CXXFLAGS = $(ROOTCXXFLAGS)
AM_CPPFLAGS += $(ROOTCPPFLAGS) -DSPRROOTTUPLE
- AM_LDFLAGS += $(ROOTLDFLAGS)
- AM_LIBS += $(ROOTLIBS)
- APPLDADD += $(ROOTLIBS)
-else
- AM_CXXFLAGS += -O4
+ AM_LDFLAGS = $(ROOTLDFLAGS)
endif
-libSPR_la_LIBADD = $(top_srcdir)/math/libSPRmath.la
+libSPR_la_LIBADD = $(top_srcdir)/math/libSPRmath.la $(ROOTLIBS)
libSPR_la_SOURCES = \
SprDataMoments.cc SprDecisionTree.cc \
SprFisher.cc SprFomCalculator.cc \
@@ -60,81 +54,52 @@
#####################################################################
+LDADD = libSPR.la
-noinst_PROGRAMS = exampleBootstrapVarianceEst exampleCorrTest \
+check_PROGRAMS = exampleBootstrapVarianceEst exampleCorrTest \
exampleUserCuts exampleMatrixTest
exampleBootstrapVarianceEst_SOURCES = exampleBootstrapVarianceEst.cc
-exampleBootstrapVarianceEst_LDADD = $(APPLDADD)
exampleCorrTest_SOURCES = exampleCorrTest.cc
-exampleCorrTest_LDADD = $(APPLDADD)
exampleMatrixTest_SOURCES = exampleMatrixTest.cc
-exampleMatrixTest_LDADD = $(APPLDADD)
bin_PROGRAMS = SprFisherLogitApp SprDecisionTreeApp SprExploratoryAnalysisApp \
SprMultiClassApp SprGoFDecisionTreeApp SprAdaBoostBinarySplitApp \
SprRBFNetApp SprAdaBoostDecisionTreeApp SprStdBackpropApp \
SprCombinerApp SprBaggerDecisionTreeApp SprBumpHunterApp \
SprInteractiveAnalysisApp SprOutputAnalyzerApp SprOutputWriterApp \
- SprBoosterApp SprBaggerApp exampleUserCuts \
+ SprBoosterApp SprBaggerApp \
SprVariableImportanceApp SprIOTestApp SprAddBaggersApp \
SprTransformationApp SprSplitterApp SprAddNRemoveRApp \
SprGEPApp SprCrossValidatorApp SprAddColumnsForMCLApp \
SprIndicatorMatrixApp
SprFisherLogitApp_SOURCES = SprFisherLogitApp.cc
-SprFisherLogitApp_LDADD = $(APPLDADD)
SprDecisionTreeApp_SOURCES = SprDecisionTreeApp.cc
-SprDecisionTreeApp_LDADD = $(APPLDADD)
SprExploratoryAnalysisApp_SOURCES = SprExploratoryAnalysisApp.cc
-SprExploratoryAnalysisApp_LDADD = $(APPLDADD)
SprMultiClassApp_SOURCES = SprMultiClassApp.cc
-SprMultiClassApp_LDADD = $(APPLDADD)
SprGoFDecisionTreeApp_SOURCES = SprGoFDecisionTreeApp.cc
-SprGoFDecisionTreeApp_LDADD = $(APPLDADD)
SprAdaBoostBinarySplitApp_SOURCES = SprAdaBoostBinarySplitApp.cc
-SprAdaBoostBinarySplitApp_LDADD = $(APPLDADD)
SprRBFNetApp_SOURCES = SprRBFNetApp.cc
-SprRBFNetApp_LDADD = $(APPLDADD)
SprAdaBoostDecisionTreeApp_SOURCES = SprAdaBoostDecisionTreeApp.cc
-SprAdaBoostDecisionTreeApp_LDADD = $(APPLDADD)
SprStdBackpropApp_SOURCES = SprStdBackpropApp.cc
-SprStdBackpropApp_LDADD = $(APPLDADD)
SprCombinerApp_SOURCES = SprCombinerApp.cc
-SprCombinerApp_LDADD = $(APPLDADD)
SprBaggerDecisionTreeApp_SOURCES = SprBaggerDecisionTreeApp.cc
-SprBaggerDecisionTreeApp_LDADD = $(APPLDADD)
SprBumpHunterApp_SOURCES = SprBumpHunterApp.cc
-SprBumpHunterApp_LDADD = $(APPLDADD)
SprInteractiveAnalysisApp_SOURCES = SprInteractiveAnalysisApp.cc
-SprInteractiveAnalysisApp_LDADD = $(APPLDADD)
SprOutputAnalyzerApp_SOURCES = SprOutputAnalyzerApp.cc
-SprOutputAnalyzerApp_LDADD = $(APPLDADD)
SprOutputWriterApp_SOURCES = SprOutputWriterApp.cc
-SprOutputWriterApp_LDADD = $(APPLDADD)
SprBoosterApp_SOURCES = SprBoosterApp.cc
-SprBoosterApp_LDADD = $(APPLDADD)
SprBaggerApp_SOURCES = SprBaggerApp.cc
-SprBaggerApp_LDADD = $(APPLDADD)
exampleUserCuts_SOURCES = exampleUserCuts.cc
-exampleUserCuts_LDADD = $(APPLDADD)
SprVariableImportanceApp_SOURCES = SprVariableImportanceApp.cc
-SprVariableImportanceApp_LDADD = $(APPLDADD)
SprIOTestApp_SOURCES = SprIOTestApp.cc
-SprIOTestApp_LDADD = $(APPLDADD)
SprAddBaggersApp_SOURCES = SprAddBaggersApp.cc
-SprAddBaggersApp_LDADD = $(APPLDADD)
SprTransformationApp_SOURCES = SprTransformationApp.cc
-SprTransformationApp_LDADD = $(APPLDADD)
SprSplitterApp_SOURCES = SprSplitterApp.cc
-SprSplitterApp_LDADD = $(APPLDADD)
SprAddNRemoveRApp_SOURCES = SprAddNRemoveRApp.cc
-SprAddNRemoveRApp_LDADD = $(APPLDADD)
SprGEPApp_SOURCES = SprGEPApp.cc
-SprGEPApp_LDADD = $(APPLDADD)
SprCrossValidatorApp_SOURCES = SprCrossValidatorApp.cc
-SprCrossValidatorApp_LDADD = $(APPLDADD)
SprAddColumnsForMCLApp_SOURCES = SprAddColumnsForMCLApp.cc
-SprAddColumnsForMCLApp_LDADD = $(APPLDADD)
SprIndicatorMatrixApp_SOURCES = SprIndicatorMatrixApp.cc
-SprIndicatorMatrixApp_LDADD = $(APPLDADD)
+
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